locus-tag class description APE_0002 PF03551 Transcriptional regulator PadR-like family APE_0009.1 PF00403 Heavy-metal-associated domain APE_0010.1 PF13520 Amino acid permease APE_0011.1 PF01791 DeoC/LacD family aldolase APE_0012 PF00294 pfkB family carbohydrate kinase APE_0013.1 PF00920 Dehydratase family APE_0017.1 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APE_0017.1 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APE_0020.1 PF00282 Pyridoxal-dependent decarboxylase conserved domain APE_0026 PF00391 PEP-utilising enzyme, mobile domain APE_0026 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APE_0028 PF00391 PEP-utilising enzyme, mobile domain APE_0028 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APE_0031.1 PF07690 Major Facilitator Superfamily APE_0033.1 PF01293 Phosphoenolpyruvate carboxykinase APE_0035.1 PF01547 Bacterial extracellular solute-binding protein APE_0038.1 PF00528 Binding-protein-dependent transport system inner membrane component APE_0040.1 PF00528 Binding-protein-dependent transport system inner membrane component APE_0043.1 PF03459 TOBE domain APE_0043.1 PF17912 MalK OB fold domain APE_0043.1 PF00005 ABC transporter APE_0045 PF12849 PBP superfamily domain APE_0047.1 PF00528 Binding-protein-dependent transport system inner membrane component APE_0048 PF00528 Binding-protein-dependent transport system inner membrane component APE_0050 PF00005 ABC transporter APE_0051 PF01895 PhoU domain APE_0053.1 PF01557 Fumarylacetoacetate (FAA) hydrolase family APE_0056.1 PF00378 Enoyl-CoA hydratase/isomerase APE_0060.1 PF00156 Phosphoribosyl transferase domain APE_0063 PF00005 ABC transporter APE_0067.1 PF02653 Branched-chain amino acid transport system / permease component APE_0071.1 PF00174 Oxidoreductase molybdopterin binding domain APE_0072 PF01578 Cytochrome C assembly protein APE_0077 PF00994 Probable molybdopterin binding domain APE_0077 PF01967 MoaC family APE_0079 PF02675 S-adenosylmethionine decarboxylase APE_0084.1 PF00881 Nitroreductase family APE_0085.1 PF02811 PHP domain APE_0085.1 PF14579 Helix-hairpin-helix motif APE_0085.1 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APE_0085.1 PF07733 Bacterial DNA polymerase III alpha NTPase domain APE_0086 PF00578 AhpC/TSA family APE_0089.1 PF01523 Putative modulator of DNA gyrase APE_0092.1 PF00850 Histone deacetylase domain APE_0099 PF00136 DNA polymerase family B APE_0099 PF03104 DNA polymerase family B, exonuclease domain APE_0101.1 PF02754 Cysteine-rich domain APE_0101.1 PF13183 4Fe-4S dicluster domain APE_0101.1 PF02665 Nitrate reductase gamma subunit APE_0105 PF01926 50S ribosome-binding GTPase APE_0110 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system APE_0110 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system APE_0117.1 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APE_0117.1 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APE_0117.1 PF02824 TGS domain APE_0117.1 PF03129 Anticodon binding domain APE_0119 PF18073 Rubredoxin metal binding domain APE_0122.1 PF01230 HIT domain APE_0127 PF17863 AAA lid domain APE_0127 PF07726 ATPase family associated with various cellular activities (AAA) APE_0134.1 PF01012 Electron transfer flavoprotein domain APE_0135 PF00766 Electron transfer flavoprotein FAD-binding domain APE_0135 PF01012 Electron transfer flavoprotein domain APE_0141.1 PF10672 S-adenosylmethionine-dependent methyltransferase APE_0141.1 PF17785 PUA-like domain APE_0146.1 PF14748 Pyrroline-5-carboxylate reductase dimerisation APE_0146.1 PF03807 NADP oxidoreductase coenzyme F420-dependent APE_0150.1 PF10576 Iron-sulfur binding domain of endonuclease III APE_0150.1 PF00633 Helix-hairpin-helix motif APE_0150.1 PF00730 HhH-GPD superfamily base excision DNA repair protein APE_0159 PF01040 UbiA prenyltransferase family APE_0163.1 PF00171 Aldehyde dehydrogenase family APE_0169.1 PF00155 Aminotransferase class I and II APE_0171.1 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APE_0171.1 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APE_0173.1 PF00162 Phosphoglycerate kinase APE_0179 PF12804 MobA-like NTP transferase domain APE_0181 PF10996 Beta-Casp domain APE_0181 PF00753 Metallo-beta-lactamase superfamily APE_0181 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APE_0182.1 PF02594 Uncharacterised ACR, YggU family COG1872 APE_0191.1 PF08148 DSHCT (NUC185) domain APE_0191.1 PF00271 Helicase conserved C-terminal domain APE_0191.1 PF00270 DEAD/DEAH box helicase APE_0193.1 PF01370 NAD dependent epimerase/dehydratase family APE_0204.1 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family APE_0212.1 PF00675 Insulinase (Peptidase family M16) APE_0212.1 PF05193 Peptidase M16 inactive domain APE_0218 PF03947 Ribosomal Proteins L2, C-terminal domain APE_0218 PF00181 Ribosomal Proteins L2, RNA binding domain APE_0227 PF00297 Ribosomal protein L3 APE_0228a.1 PF00276 Ribosomal protein L23 APE_0230.1 PF10609 NUBPL iron-transfer P-loop NTPase APE_0231 PF00571 CBS domain APE_0231 PF00392 Bacterial regulatory proteins, gntR family APE_0231 PF07085 DRTGG domain APE_0231 PF03061 Thioesterase superfamily APE_0236.1 PF10414 Sirohaem synthase dimerisation region APE_0236.1 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APE_0236.1 PF14824 Sirohaem biosynthesis protein central APE_0244.1 PF01174 SNO glutamine amidotransferase family APE_0246.1 PF01680 SOR/SNZ family APE_0248.1 PF02621 Menaquinone biosynthesis APE_0249.1 PF04055 Radical SAM superfamily APE_0252 PF04055 Radical SAM superfamily APE_0255.1 PF00483 Nucleotidyl transferase APE_0258.1 PF11870 Domain of unknown function (DUF3390) APE_0258.1 PF02589 LUD domain APE_0258.1 PF13183 4Fe-4S dicluster domain APE_0260.1 PF01180 Dihydroorotate dehydrogenase APE_0261.1 PF01979 Amidohydrolase family APE_0262 PF03009 Glycerophosphoryl diester phosphodiesterase family APE_0263.1 PF00082 Subtilase family APE_0263.1 PF05922 Peptidase inhibitor I9 APE_0267 PF00571 CBS domain APE_0270.1 PF00528 Binding-protein-dependent transport system inner membrane component APE_0288 PF01047 MarR family APE_0291 PF00578 AhpC/TSA family APE_0300.1 PF00005 ABC transporter APE_0300.1 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APE_0301.1 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APE_0301.1 PF00005 ABC transporter APE_0302.1 PF12911 N-terminal TM domain of oligopeptide transport permease C APE_0302.1 PF00528 Binding-protein-dependent transport system inner membrane component APE_0303 PF00528 Binding-protein-dependent transport system inner membrane component APE_0304.1 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APE_0306.1 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APE_0306.1 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APE_0308.1 PF02913 FAD linked oxidases, C-terminal domain APE_0308.1 PF01565 FAD binding domain APE_0313.1 PF01980 tRNA-methyltransferase O APE_0316.1 PF00491 Arginase family APE_0317.1 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APE_0317.1 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APE_0317.1 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APE_0317.1 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APE_0319 PF01965 DJ-1/PfpI family APE_0326.1 PF17862 AAA+ lid domain APE_0326.1 PF00004 ATPase family associated with various cellular activities (AAA) APE_0326.1 PF01434 Peptidase family M41 APE_0333.1 PF00692 dUTPase APE_0336.1 PF01804 Penicillin amidase APE_0338.1 PF00144 Beta-lactamase APE_0338.1 PF11954 Domain of unknown function (DUF3471) APE_0342.1 PF03061 Thioesterase superfamily APE_0346 PF00333 Ribosomal protein S5, N-terminal domain APE_0346 PF03719 Ribosomal protein S5, C-terminal domain APE_0350 PF00347 Ribosomal protein L6 APE_0352.1 PF00410 Ribosomal protein S8 APE_0354.1 PF00281 Ribosomal protein L5 APE_0354.1 PF00673 ribosomal L5P family C-terminus APE_0356.1 PF01479 S4 domain APE_0356.1 PF00163 Ribosomal protein S4/S9 N-terminal domain APE_0358 PF00467 KOW motif APE_0358 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APE_0359 PF00238 Ribosomal protein L14p/L23e APE_0360.1 PF00366 Ribosomal protein S17 APE_0362a PF00831 Ribosomal L29 protein APE_0363 PF00189 Ribosomal protein S3, C-terminal domain APE_0363 PF07650 KH domain APE_0365 PF00237 Ribosomal protein L22p/L17e APE_0367.1 PF00203 Ribosomal protein S19 APE_0374 PF00133 tRNA synthetases class I (I, L, M and V) APE_0374 PF08264 Anticodon-binding domain of tRNA APE_0382 PF00753 Metallo-beta-lactamase superfamily APE_0383.1 PF00571 CBS domain APE_0383.1 PF01380 SIS domain APE_0385.1 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APE_0385.1 PF02770 Acyl-CoA dehydrogenase, middle domain APE_0385.1 PF12806 Acetyl-CoA dehydrogenase C-terminal like APE_0385.1 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APE_0392 PF03949 Malic enzyme, NAD binding domain APE_0392 PF00390 Malic enzyme, N-terminal domain APE_0396.1 PF13193 AMP-binding enzyme C-terminal domain APE_0396.1 PF00501 AMP-binding enzyme APE_0401.1 PF00696 Amino acid kinase family APE_0402.1 PF01813 ATP synthase subunit D APE_0404.1 PF02874 ATP synthase alpha/beta family, beta-barrel domain APE_0404.1 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APE_0405.1 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APE_0405.1 PF02874 ATP synthase alpha/beta family, beta-barrel domain APE_0405.1 PF16886 ATPsynthase alpha/beta subunit N-term extension APE_0412 PF00282 Pyridoxal-dependent decarboxylase conserved domain APE_0413 PF00271 Helicase conserved C-terminal domain APE_0413 PF00176 SNF2 family N-terminal domain APE_0423.1 PF01026 TatD related DNase APE_0426.1 PF00535 Glycosyl transferase family 2 APE_0427.1 PF03167 Uracil DNA glycosylase superfamily APE_0436.1 PF00013 KH domain APE_0436.1 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APE_0436.1 PF01138 3' exoribonuclease family, domain 1 APE_0436.1 PF03725 3' exoribonuclease family, domain 2 APE_0436.1 PF00575 S1 RNA binding domain APE_0445 PF00575 S1 RNA binding domain APE_0449 PF00252 Ribosomal protein L16p/L10e APE_0450 PF00994 Probable molybdopterin binding domain APE_0450 PF03454 MoeA C-terminal region (domain IV) APE_0450 PF03453 MoeA N-terminal region (domain I and II) APE_0454 PF03749 Sugar fermentation stimulation protein RE domain APE_0454 PF17746 SfsA N-terminal OB domain APE_0457 PF00202 Aminotransferase class-III APE_0465.1 PF02568 Thiamine biosynthesis protein (ThiI) APE_0465.1 PF02926 THUMP domain APE_0471.1 PF00005 ABC transporter APE_0471.1 PF13732 Domain of unknown function (DUF4162) APE_0475.1 PF00009 Elongation factor Tu GTP binding domain APE_0478.1 PF06463 Molybdenum Cofactor Synthesis C APE_0478.1 PF04055 Radical SAM superfamily APE_0487 PF01565 FAD binding domain APE_0487 PF02913 FAD linked oxidases, C-terminal domain APE_0489 PF00224 Pyruvate kinase, barrel domain APE_0489 PF02887 Pyruvate kinase, alpha/beta domain APE_0490.1 PF00156 Phosphoribosyl transferase domain APE_0492.1 PF00881 Nitroreductase family APE_0496.1 PF01351 Ribonuclease HII APE_0506 PF04493 Endonuclease V APE_0510.1 PF01018 GTP1/OBG APE_0510.1 PF01926 50S ribosome-binding GTPase APE_0511.1 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain APE_0511.1 PF01137 RNA 3'-terminal phosphate cyclase APE_0514 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF APE_0514 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF APE_0514 PF01189 16S rRNA methyltransferase RsmB/F APE_0517 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APE_0519.1 PF13685 Iron-containing alcohol dehydrogenase APE_0521.1 PF00227 Proteasome subunit APE_0522.1 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain APE_0522.1 PF10996 Beta-Casp domain APE_0522.1 PF00753 Metallo-beta-lactamase superfamily APE_0525.1 PF00696 Amino acid kinase family APE_0525.1 PF01472 PUA domain APE_0526.1 PF00557 Metallopeptidase family M24 APE_0526.1 PF01321 Creatinase/Prolidase N-terminal domain APE_0528 PF03069 Acetamidase/Formamidase family APE_0532.1 PF00005 ABC transporter APE_0537.1 PF01171 PP-loop family APE_0553 PF00398 Ribosomal RNA adenine dimethylase APE_0555.1 PF00588 SpoU rRNA Methylase family APE_0557 PF01170 Putative RNA methylase family UPF0020 APE_0557 PF02926 THUMP domain APE_0564 PF01264 Chorismate synthase APE_0569 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APE_0574.1 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APE_0574.1 PF08501 Shikimate dehydrogenase substrate binding domain APE_0574.1 PF01488 Shikimate / quinate 5-dehydrogenase APE_0579 PF01761 3-dehydroquinate synthase APE_0581.1 PF01817 Chorismate mutase type II APE_0581.1 PF00793 DAHP synthetase I family APE_0583 PF02779 Transketolase, pyrimidine binding domain APE_0583 PF02780 Transketolase, C-terminal domain APE_0586.1 PF00456 Transketolase, thiamine diphosphate binding domain APE_0591.1 PF00378 Enoyl-CoA hydratase/isomerase APE_0595.1 PF07992 Pyridine nucleotide-disulphide oxidoreductase APE_0607 PF00082 Subtilase family APE_0607 PF05922 Peptidase inhibitor I9 APE_0607 PF13860 FlgD Ig-like domain APE_0607 PF02225 PA domain APE_0621.1 PF01884 PcrB family APE_0624.1 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain APE_0624.1 PF05221 S-adenosyl-L-homocysteine hydrolase APE_0632.1 PF07687 Peptidase dimerisation domain APE_0632.1 PF01546 Peptidase family M20/M25/M40 APE_0639.1 PF02675 S-adenosylmethionine decarboxylase APE_0641 PF00085 Thioredoxin APE_0650.1 PF00391 PEP-utilising enzyme, mobile domain APE_0650.1 PF02896 PEP-utilising enzyme, TIM barrel domain APE_0650.1 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APE_0662.1 PF13393 Histidyl-tRNA synthetase APE_0662.1 PF03129 Anticodon binding domain APE_0665 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APE_0669.1 PF03070 TENA/THI-4/PQQC family APE_0672.1 PF00056 lactate/malate dehydrogenase, NAD binding domain APE_0672.1 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APE_0674.1 PF00155 Aminotransferase class I and II APE_0675.1 PF08264 Anticodon-binding domain of tRNA APE_0675.1 PF09334 tRNA synthetases class I (M) APE_0675.1 PF01588 Putative tRNA binding domain APE_0676 PF02548 Ketopantoate hydroxymethyltransferase APE_0677.1 PF02558 Ketopantoate reductase PanE/ApbA APE_0677.1 PF08546 Ketopantoate reductase PanE/ApbA C terminal APE_0686 PF01008 Initiation factor 2 subunit family APE_0688 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APE_0689.1 PF00180 Isocitrate/isopropylmalate dehydrogenase APE_0695.1 PF00437 Type II/IV secretion system protein APE_0708.1 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APE_0708.1 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APE_0712.1 PF13378 Enolase C-terminal domain-like APE_0712.1 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain APE_0715.1 PF02386 Cation transport protein APE_0739 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APE_0739 PF02770 Acyl-CoA dehydrogenase, middle domain APE_0739 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APE_0741 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APE_0741 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APE_0745.1 PF06745 KaiC APE_0767.1 PF17284 Spermidine synthase tetramerisation domain APE_0781.1 PF03266 NTPase APE_0782.1 PF02005 N2,N2-dimethylguanosine tRNA methyltransferase APE_0785.1 PF01769 Divalent cation transporter APE_0785.1 PF00571 CBS domain APE_0785.1 PF03448 MgtE intracellular N domain APE_0792.1 PF02790 Cytochrome C oxidase subunit II, transmembrane domain APE_0792.1 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APE_0793.1 PF00510 Cytochrome c oxidase subunit III APE_0793.1 PF00115 Cytochrome C and Quinol oxidase polypeptide I APE_0801.1 PF01975 Survival protein SurE APE_0805 PF00589 Phage integrase family APE_0805 PF02899 Phage integrase, N-terminal SAM-like domain APE_0807.1 PF00171 Aldehyde dehydrogenase family APE_0809.1 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APE_0809.1 PF03129 Anticodon binding domain APE_0809.1 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APE_0872.1 PF00145 C-5 cytosine-specific DNA methylase APE_0892.1 PF08402 TOBE domain APE_0892.1 PF00005 ABC transporter APE_0903.1 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APE_0903.1 PF02272 DHHA1 domain APE_0903.1 PF01411 tRNA synthetases class II (A) APE_0907.1 PF00118 TCP-1/cpn60 chaperonin family APE_0917 PF13458 Periplasmic binding protein APE_0919 PF00005 ABC transporter APE_0919 PF12399 Branched-chain amino acid ATP-binding cassette transporter APE_0921 PF00005 ABC transporter APE_0929.1 PF00108 Thiolase, N-terminal domain APE_0929.1 PF02803 Thiolase, C-terminal domain APE_0935 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster APE_0935 PF07992 Pyridine nucleotide-disulphide oxidoreductase APE_0941 PF00528 Binding-protein-dependent transport system inner membrane component APE_0943 PF00528 Binding-protein-dependent transport system inner membrane component APE_0944.1 PF08402 TOBE domain APE_0944.1 PF00005 ABC transporter APE_0945.1 PF13416 Bacterial extracellular solute-binding protein APE_0946 PF13183 4Fe-4S dicluster domain APE_0946 PF13085 2Fe-2S iron-sulfur cluster binding domain APE_0948.1 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit APE_0950.1 PF00890 FAD binding domain APE_0950.1 PF02910 Fumarate reductase flavoprotein C-term APE_0951.1 PF01597 Glycine cleavage H-protein APE_0955 PF00027 Cyclic nucleotide-binding domain APE_0955 PF00520 Ion transport protein APE_0959 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APE_0959 PF02805 Metal binding domain of Ada APE_0959 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APE_0959 PF12833 Helix-turn-helix domain APE_0960 PF17862 AAA+ lid domain APE_0960 PF06480 FtsH Extracellular APE_0960 PF01434 Peptidase family M41 APE_0960 PF00004 ATPase family associated with various cellular activities (AAA) APE_0966.1 PF00149 Calcineurin-like phosphoesterase APE_0972.1 PF00474 Sodium:solute symporter family APE_0974.1 PF00571 CBS domain APE_0974.1 PF01380 SIS domain APE_0979.1 PF01425 Amidase APE_0986.1 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APE_0993.1 PF01048 Phosphorylase superfamily APE_0996.1 PF13660 Domain of unknown function (DUF4147) APE_0996.1 PF05161 MOFRL family APE_1015 PF09334 tRNA synthetases class I (M) APE_1015 PF13603 Leucyl-tRNA synthetase, Domain 2 APE_1015 PF00133 tRNA synthetases class I (I, L, M and V) APE_1015 PF08264 Anticodon-binding domain of tRNA APE_1026.1 PF00005 ABC transporter APE_1035.1 PF12592 Protein of unknown function (DUF3763) APE_1035.1 PF17868 AAA lid domain APE_1035.1 PF07728 AAA domain (dynein-related subfamily) APE_1038.1 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APE_1043.1 PF07992 Pyridine nucleotide-disulphide oxidoreductase APE_1044 PF00881 Nitroreductase family APE_1045.1 PF01435 Peptidase family M48 APE_1049.1 PF01497 Periplasmic binding protein APE_1053.1 PF01032 FecCD transport family APE_1055.1 PF00005 ABC transporter APE_1056.1 PF01871 AMMECR1 APE_1061.1 PF07992 Pyridine nucleotide-disulphide oxidoreductase APE_1065.1 PF08442 ATP-grasp domain APE_1065.1 PF00549 CoA-ligase APE_1072.1 PF00549 CoA-ligase APE_1072.1 PF02629 CoA binding domain APE_1073 PF00271 Helicase conserved C-terminal domain APE_1073 PF04851 Type III restriction enzyme, res subunit APE_1081.1 PF00448 SRP54-type protein, GTPase domain APE_1081.1 PF02881 SRP54-type protein, helical bundle domain APE_1094.1 PF01068 ATP dependent DNA ligase domain APE_1094.1 PF04679 ATP dependent DNA ligase C terminal region APE_1094.1 PF04675 DNA ligase N terminus APE_1098 PF01189 16S rRNA methyltransferase RsmB/F APE_1098 PF01029 NusB family APE_1104.1 PF01513 ATP-NAD kinase APE_1106.1 PF05958 tRNA (Uracil-5-)-methyltransferase APE_1109.1 PF01950 Fructose-1,6-bisphosphatase APE_1119.1 PF00005 ABC transporter APE_1129 PF09334 tRNA synthetases class I (M) APE_1129 PF08264 Anticodon-binding domain of tRNA APE_1135 PF00814 Glycoprotease family APE_1136.1 PF00069 Protein kinase domain APE_1136.1 PF03793 PASTA domain APE_1138.1 PF01725 Ham1 family APE_1139 PF00312 Ribosomal protein S15 APE_1140.1 PF01842 ACT domain APE_1140.1 PF00696 Amino acid kinase family APE_1143 PF02774 Semialdehyde dehydrogenase, dimerisation domain APE_1143 PF01118 Semialdehyde dehydrogenase, NAD binding domain APE_1144.1 PF03447 Homoserine dehydrogenase, NAD binding domain APE_1144.1 PF00742 Homoserine dehydrogenase APE_1144.1 PF01842 ACT domain APE_1156.1 PF02926 THUMP domain APE_1156.1 PF02568 Thiamine biosynthesis protein (ThiI) APE_1158.1 PF00919 Uncharacterized protein family UPF0004 APE_1158.1 PF04055 Radical SAM superfamily APE_1164 PF06071 Protein of unknown function (DUF933) APE_1164 PF01926 50S ribosome-binding GTPase APE_1178 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APE_1179.1 PF04321 RmlD substrate binding domain APE_1180 PF16363 GDP-mannose 4,6 dehydratase APE_1181 PF00483 Nucleotidyl transferase APE_1183 PF01209 ubiE/COQ5 methyltransferase family APE_1189.1 PF00535 Glycosyl transferase family 2 APE_1191 PF00534 Glycosyl transferases group 1 APE_1191 PF13439 Glycosyltransferase Family 4 APE_1197.1 PF01747 ATP-sulfurylase APE_1197.1 PF14306 PUA-like domain APE_1202.1 PF00483 Nucleotidyl transferase APE_1205.1 PF01380 SIS domain APE_1208.1 PF00483 Nucleotidyl transferase APE_1209f PF00441 Acyl-CoA dehydrogenase, C-terminal domain APE_1209f PF02770 Acyl-CoA dehydrogenase, middle domain APE_1209f PF02771 Acyl-CoA dehydrogenase, N-terminal domain APE_1223.1 PF00571 CBS domain APE_1223.1 PF00291 Pyridoxal-phosphate dependent enzyme APE_1226 PF01053 Cys/Met metabolism PLP-dependent enzyme APE_1232 PF18019 HD domain APE_1232 PF18395 Cas3 C-terminal domain APE_1245.1 PF00107 Zinc-binding dehydrogenase APE_1245.1 PF08240 Alcohol dehydrogenase GroES-like domain APE_1253 PF00005 ABC transporter APE_1255.1 PF00005 ABC transporter APE_1260 PF00753 Metallo-beta-lactamase superfamily APE_1265.1 PF01842 ACT domain APE_1265.1 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APE_1265.1 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APE_1275 PF01212 Beta-eliminating lyase APE_1281 PF01966 HD domain APE_1285.1 PF00850 Histone deacetylase domain APE_1288.1 PF01568 Molydopterin dinucleotide binding domain APE_1288.1 PF14710 Respiratory nitrate reductase alpha N-terminal APE_1288.1 PF00384 Molybdopterin oxidoreductase APE_1294.1 PF14711 Respiratory nitrate reductase beta C-terminal APE_1294.1 PF13247 4Fe-4S dicluster domain APE_1300.1 PF02613 Nitrate reductase delta subunit APE_1301.1 PF00005 ABC transporter APE_1304.1 PF11862 Domain of unknown function (DUF3382) APE_1304.1 PF02653 Branched-chain amino acid transport system / permease component APE_1307 PF00501 AMP-binding enzyme APE_1308 PF12399 Branched-chain amino acid ATP-binding cassette transporter APE_1308 PF00005 ABC transporter APE_1310 PF13193 AMP-binding enzyme C-terminal domain APE_1310 PF00501 AMP-binding enzyme APE_1317 PF07726 ATPase family associated with various cellular activities (AAA) APE_1317 PF17863 AAA lid domain APE_1328.1 PF01968 Hydantoinase/oxoprolinase APE_1328.1 PF05378 Hydantoinase/oxoprolinase N-terminal region APE_1333 PF03992 Antibiotic biosynthesis monooxygenase APE_1335.1 PF05343 M42 glutamyl aminopeptidase APE_1340.1 PF01131 DNA topoisomerase APE_1340.1 PF01751 Toprim domain APE_1340.1 PF17915 Reverse gyrase zinc finger APE_1340.1 PF00270 DEAD/DEAH box helicase APE_1346.1 PF16177 Acetyl-coenzyme A synthetase N-terminus APE_1346.1 PF00501 AMP-binding enzyme APE_1346.1 PF13193 AMP-binding enzyme C-terminal domain APE_1350.1 PF01967 MoaC family APE_1353.1 PF00270 DEAD/DEAH box helicase APE_1353.1 PF00271 Helicase conserved C-terminal domain APE_1353.1 PF00570 HRDC domain APE_1353.1 PF16124 RecQ zinc-binding APE_1353.1 PF09382 RQC domain APE_1366.1 PF00885 6,7-dimethyl-8-ribityllumazine synthase APE_1367 PF01434 Peptidase family M41 APE_1367 PF00004 ATPase family associated with various cellular activities (AAA) APE_1367 PF17862 AAA+ lid domain APE_1367 PF06480 FtsH Extracellular APE_1376.1 PF01751 Toprim domain APE_1376.1 PF01131 DNA topoisomerase APE_1376.1 PF17915 Reverse gyrase zinc finger APE_1376.1 PF00270 DEAD/DEAH box helicase APE_1380.1 PF00005 ABC transporter APE_1385 PF01255 Putative undecaprenyl diphosphate synthase APE_1386.1 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APE_1386.1 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APE_1390.1 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APE_1395.1 PF00528 Binding-protein-dependent transport system inner membrane component APE_1396 PF12911 N-terminal TM domain of oligopeptide transport permease C APE_1396 PF00528 Binding-protein-dependent transport system inner membrane component APE_1399 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APE_1399 PF00005 ABC transporter APE_1402.1 PF00005 ABC transporter APE_1402.1 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APE_1404.1 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APE_1410.1 PF00361 Proton-conducting membrane transporter APE_1411.1 PF00361 Proton-conducting membrane transporter APE_1411.1 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus APE_1415 PF00361 Proton-conducting membrane transporter APE_1421.1 PF00146 NADH dehydrogenase APE_1422 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit APE_1426 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit APE_1428.1 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APE_1432 PF03144 Elongation factor Tu domain 2 APE_1432 PF14492 Elongation Factor G, domain II APE_1432 PF00009 Elongation factor Tu GTP binding domain APE_1432 PF03764 Elongation factor G, domain IV APE_1432 PF00679 Elongation factor G C-terminus APE_1436.1 PF10635 DisA bacterial checkpoint controller linker region APE_1436.1 PF02457 DisA bacterial checkpoint controller nucleotide-binding APE_1445 PF01138 3' exoribonuclease family, domain 1 APE_1445 PF00013 KH domain APE_1445 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APE_1445 PF03725 3' exoribonuclease family, domain 2 APE_1445 PF00575 S1 RNA binding domain APE_1447 PF00575 S1 RNA binding domain APE_1447 PF03725 3' exoribonuclease family, domain 2 APE_1447 PF01138 3' exoribonuclease family, domain 1 APE_1447 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APE_1447 PF00013 KH domain APE_1454.1 PF00403 Heavy-metal-associated domain APE_1458 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APE_1458 PF07992 Pyridine nucleotide-disulphide oxidoreductase APE_1461.1 PF00696 Amino acid kinase family APE_1462 PF01118 Semialdehyde dehydrogenase, NAD binding domain APE_1462 PF02774 Semialdehyde dehydrogenase, dimerisation domain APE_1463 PF08443 RimK-like ATP-grasp domain APE_1464 PF00202 Aminotransferase class-III APE_1467.1 PF01546 Peptidase family M20/M25/M40 APE_1470.1 PF06508 Queuosine biosynthesis protein QueC APE_1471.1 PF14489 QueF-like protein APE_1472 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APE_1473.1 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APE_1473.1 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg APE_1473.1 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II APE_1481.1 PF03099 Biotin/lipoate A/B protein ligase family APE_1481.1 PF00293 NUDIX domain APE_1484.1 PF00378 Enoyl-CoA hydratase/isomerase APE_1488.1 PF00291 Pyridoxal-phosphate dependent enzyme APE_1491.1 PF10414 Sirohaem synthase dimerisation region APE_1491.1 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APE_1491.1 PF14824 Sirohaem biosynthesis protein central APE_1495.1 PF00248 Aldo/keto reductase family APE_1495a PF01402 Ribbon-helix-helix protein, copG family APE_1495a PF08753 NikR C terminal nickel binding domain APE_1498.1 PF13291 ACT domain APE_1498.1 PF00291 Pyridoxal-phosphate dependent enzyme APE_1501.1 PF01042 Endoribonuclease L-PSP APE_1505.1 PF06745 KaiC APE_1507.1 PF00478 IMP dehydrogenase / GMP reductase domain APE_1507.1 PF00571 CBS domain APE_1516.1 PF01066 CDP-alcohol phosphatidyltransferase APE_1516.1 PF00483 Nucleotidyl transferase APE_1520.1 PF01894 Uncharacterised protein family UPF0047 APE_1522.1 PF05496 Holliday junction DNA helicase RuvB P-loop domain APE_1522.1 PF05491 RuvB C-terminal winged helix domain APE_1522.1 PF17864 RuvB AAA lid domain APE_1524.1 PF02190 ATP-dependent protease La (LON) substrate-binding domain APE_1524.1 PF05362 Lon protease (S16) C-terminal proteolytic domain APE_1524.1 PF00004 ATPase family associated with various cellular activities (AAA) APE_1530.1 PF01938 TRAM domain APE_1530.1 PF00919 Uncharacterized protein family UPF0004 APE_1530.1 PF04055 Radical SAM superfamily APE_1538.1 PF05690 Thiazole biosynthesis protein ThiG APE_1543 PF13718 GNAT acetyltransferase 2 APE_1543 PF17176 tRNA-binding domain APE_1543 PF05127 Helicase APE_1543 PF08351 Domain of unknown function (DUF1726) APE_1547.1 PF00326 Prolyl oligopeptidase family APE_1547.1 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region APE_1548.1 PF00005 ABC transporter APE_1552 PF00654 Voltage gated chloride channel APE_1555.1 PF00654 Voltage gated chloride channel APE_1557.1 PF08240 Alcohol dehydrogenase GroES-like domain APE_1557.1 PF00107 Zinc-binding dehydrogenase APE_1564.1 PF08745 PINc domain ribonuclease APE_1571.1 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APE_1576 PF00005 ABC transporter APE_1576 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APE_1578 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APE_1578 PF00005 ABC transporter APE_1581.1 PF12911 N-terminal TM domain of oligopeptide transport permease C APE_1581.1 PF00528 Binding-protein-dependent transport system inner membrane component APE_1582 PF00528 Binding-protein-dependent transport system inner membrane component APE_1586 PF00291 Pyridoxal-phosphate dependent enzyme APE_1586a PF02771 Acyl-CoA dehydrogenase, N-terminal domain APE_1586a PF02770 Acyl-CoA dehydrogenase, middle domain APE_1586a PF00441 Acyl-CoA dehydrogenase, C-terminal domain APE_1588a PF00391 PEP-utilising enzyme, mobile domain APE_1588a PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APE_1588a PF02896 PEP-utilising enzyme, TIM barrel domain APE_1588b PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain APE_1588b PF00391 PEP-utilising enzyme, mobile domain APE_1591.1 PF00708 Acylphosphatase APE_1592.1 PF01406 tRNA synthetases class I (C) catalytic domain APE_1592.1 PF09190 DALR domain APE_1594 PF00581 Rhodanese-like domain APE_1594 PF00899 ThiF family APE_1596 PF01941 S-adenosylmethionine synthetase (AdoMet synthetase) APE_1604 PF06418 CTP synthase N-terminus APE_1604 PF00117 Glutamine amidotransferase class-I APE_1605.1 PF13344 Haloacid dehalogenase-like hydrolase APE_1616.1 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase APE_1616.1 PF01676 Metalloenzyme superfamily APE_1618.1 PF00694 Aconitase C-terminal domain APE_1618.1 PF00330 Aconitase family (aconitate hydratase) APE_1622.1 PF01494 FAD binding domain APE_1623 PF00115 Cytochrome C and Quinol oxidase polypeptide I APE_1632 PF00528 Binding-protein-dependent transport system inner membrane component APE_1635.1 PF17912 MalK OB fold domain APE_1635.1 PF00005 ABC transporter APE_1637.1 PF00491 Arginase family APE_1639 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APE_1639 PF03129 Anticodon binding domain APE_1647 PF02441 Flavoprotein APE_1648.1 PF01661 Macro domain APE_1652 PF06463 Molybdenum Cofactor Synthesis C APE_1652 PF04055 Radical SAM superfamily APE_1655 PF13186 Iron-sulfur cluster-binding domain APE_1655 PF04055 Radical SAM superfamily APE_1659 PF00248 Aldo/keto reductase family APE_1662.1 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain APE_1662.1 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain APE_1663.1 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APE_1663.1 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APE_1668 PF03091 CutA1 divalent ion tolerance protein APE_1669.1 PF07992 Pyridine nucleotide-disulphide oxidoreductase APE_1669.1 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APE_1671 PF02817 e3 binding domain APE_1671 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APE_1671 PF00364 Biotin-requiring enzyme APE_1674 PF02779 Transketolase, pyrimidine binding domain APE_1674 PF02780 Transketolase, C-terminal domain APE_1677.1 PF00676 Dehydrogenase E1 component APE_1681.1 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APE_1681.1 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APE_1681.1 PF02770 Acyl-CoA dehydrogenase, middle domain APE_1686.1 PF02310 B12 binding domain APE_1686.1 PF01642 Methylmalonyl-CoA mutase APE_1687 PF02310 B12 binding domain APE_1687 PF01642 Methylmalonyl-CoA mutase APE_1691 PF02535 ZIP Zinc transporter APE_1692.1 PF00719 Inorganic pyrophosphatase APE_1694.1 PF02628 Cytochrome oxidase assembly protein APE_1695.1 PF01571 Aminomethyltransferase folate-binding domain APE_1695.1 PF08669 Glycine cleavage T-protein C-terminal barrel domain APE_1702 PF00005 ABC transporter APE_1703 PF01458 Uncharacterized protein family (UPF0051) APE_1713 PF00285 Citrate synthase, C-terminal domain APE_1717.1 PF01425 Amidase APE_1718 PF02934 GatB/GatE catalytic domain APE_1718 PF02637 GatB domain APE_1720 PF09125 Cytochrome C oxidase subunit II, transmembrane APE_1720 PF00116 Cytochrome C oxidase subunit II, periplasmic domain APE_1722 PF00085 Thioredoxin APE_1723.1 PF01596 O-methyltransferase APE_1724.1 PF00355 Rieske [2Fe-2S] domain APE_1725 PF00032 Cytochrome b(C-terminal)/b6/petD APE_1725 PF00033 Cytochrome b/b6/petB APE_1730.1 PF00528 Binding-protein-dependent transport system inner membrane component APE_1732 PF08402 TOBE domain APE_1732 PF00005 ABC transporter APE_1735 PF02978 Signal peptide binding domain APE_1735 PF02881 SRP54-type protein, helical bundle domain APE_1735 PF00448 SRP54-type protein, GTPase domain APE_1737.1 PF00416 Ribosomal protein S13/S18 APE_1739.1 PF01479 S4 domain APE_1739.1 PF00163 Ribosomal protein S4/S9 N-terminal domain APE_1742.1 PF00411 Ribosomal protein S11 APE_1747 PF00572 Ribosomal protein L13 APE_1749 PF00380 Ribosomal protein S9/S16 APE_1750 PF00318 Ribosomal protein S2 APE_1756 PF00750 tRNA synthetases class I (R) APE_1756 PF05746 DALR anticodon binding domain APE_1756 PF03485 Arginyl tRNA synthetase N terminal domain APE_1758.1 PF01139 tRNA-splicing ligase RtcB APE_1764.1 PF00348 Polyprenyl synthetase APE_1765.1 PF01070 FMN-dependent dehydrogenase APE_1771 PF01875 Memo-like protein APE_1773.1 PF01554 MatE APE_1775.1 PF02074 Carboxypeptidase Taq (M32) metallopeptidase APE_1782.1 PF02146 Sir2 family APE_1786.1 PF00171 Aldehyde dehydrogenase family APE_1792 PF02834 LigT like Phosphoesterase APE_1794 PF01131 DNA topoisomerase APE_1794 PF01751 Toprim domain APE_1797 PF01588 Putative tRNA binding domain APE_1797 PF03484 tRNA synthetase B5 domain APE_1797 PF03147 Ferredoxin-fold anticodon binding domain APE_1797 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APE_1797 PF03483 B3/4 domain APE_1798.1 PF00459 Inositol monophosphatase family APE_1805.1 PF00133 tRNA synthetases class I (I, L, M and V) APE_1805.1 PF10458 Valyl tRNA synthetase tRNA binding arm APE_1805.1 PF08264 Anticodon-binding domain of tRNA APE_1816.1 PF00206 Lyase APE_1816.1 PF10415 Fumarase C C-terminus APE_1829 PF00005 ABC transporter APE_1831.1 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APE_1831.1 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APE_1832 PF00326 Prolyl oligopeptidase family APE_1832 PF07676 WD40-like Beta Propeller Repeat APE_1834.1 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APE_1834.1 PF14572 Phosphoribosyl synthetase-associated domain APE_1836.1 PF12706 Beta-lactamase superfamily domain APE_1838.1 PF00478 IMP dehydrogenase / GMP reductase domain APE_1838.1 PF00571 CBS domain APE_1842 PF00338 Ribosomal protein S10p/S20e APE_1844 PF03143 Elongation factor Tu C-terminal domain APE_1844 PF03144 Elongation factor Tu domain 2 APE_1844 PF00009 Elongation factor Tu GTP binding domain APE_1846.1 PF00177 Ribosomal protein S7p/S5e APE_1852.1 PF04983 RNA polymerase Rpb1, domain 3 APE_1852.1 PF05000 RNA polymerase Rpb1, domain 4 APE_1852.1 PF04998 RNA polymerase Rpb1, domain 5 APE_1852.1 PF04997 RNA polymerase Rpb1, domain 1 APE_1852.1 PF00623 RNA polymerase Rpb1, domain 2 APE_1853.1 PF04983 RNA polymerase Rpb1, domain 3 APE_1853.1 PF00623 RNA polymerase Rpb1, domain 2 APE_1853.1 PF04998 RNA polymerase Rpb1, domain 5 APE_1853.1 PF04997 RNA polymerase Rpb1, domain 1 APE_1853.1 PF05000 RNA polymerase Rpb1, domain 4 APE_1856 PF04563 RNA polymerase beta subunit APE_1856 PF04565 RNA polymerase Rpb2, domain 3 APE_1856 PF10385 RNA polymerase beta subunit external 1 domain APE_1856 PF00562 RNA polymerase Rpb2, domain 6 APE_1856 PF04560 RNA polymerase Rpb2, domain 7 APE_1856 PF04561 RNA polymerase Rpb2, domain 2 APE_1873.1 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APE_1873.1 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APE_1874.1 PF06463 Molybdenum Cofactor Synthesis C APE_1874.1 PF04055 Radical SAM superfamily APE_1877.1 PF01694 Rhomboid family APE_1878 PF01040 UbiA prenyltransferase family APE_1885 PF01048 Phosphorylase superfamily APE_1889 PF08241 Methyltransferase domain APE_1891.1 PF00005 ABC transporter APE_1892 PF00528 Binding-protein-dependent transport system inner membrane component APE_1893.1 PF01464 Transglycosylase SLT domain APE_1893.1 PF00497 Bacterial extracellular solute-binding proteins, family 3 APE_1896.1 PF00437 Type II/IV secretion system protein APE_1898 PF18073 Rubredoxin metal binding domain APE_1911.1 PF09383 NIL domain APE_1911.1 PF00005 ABC transporter APE_1917 PF01546 Peptidase family M20/M25/M40 APE_1917 PF07687 Peptidase dimerisation domain APE_1932.1 PF12679 ABC-2 family transporter protein APE_1934.1 PF00005 ABC transporter APE_1940.1 PF01380 SIS domain APE_1950.1 PF00011 Hsp20/alpha crystallin family APE_1958.1 PF02540 NAD synthase APE_1959.1 PF04127 DNA / pantothenate metabolism flavoprotein APE_1959.1 PF02441 Flavoprotein APE_1961 PF00248 Aldo/keto reductase family APE_1962.1 PF00464 Serine hydroxymethyltransferase APE_1963.1 PF00465 Iron-containing alcohol dehydrogenase APE_1968 PF00696 Amino acid kinase family APE_1976.1 PF02403 Seryl-tRNA synthetase N-terminal domain APE_1976.1 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APE_1979.1 PF01883 Iron-sulfur cluster assembly protein APE_1980.1 PF00994 Probable molybdopterin binding domain APE_1980.1 PF18146 Damage-inducible protein CinA KH domain APE_1980.1 PF02464 Competence-damaged protein APE_1992.1 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APE_1992.1 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APE_2002 PF00145 C-5 cytosine-specific DNA methylase APE_2007 PF01926 50S ribosome-binding GTPase APE_2007 PF13167 GTP-binding GTPase N-terminal APE_2007 PF16360 GTP-binding GTPase Middle Region APE_2012 PF17862 AAA+ lid domain APE_2012 PF00004 ATPase family associated with various cellular activities (AAA) APE_2012 PF01434 Peptidase family M41 APE_2012 PF06480 FtsH Extracellular APE_2017 PF01702 Queuine tRNA-ribosyltransferase APE_2021.1 PF01475 Ferric uptake regulator family APE_2023 PF00266 Aminotransferase class-V APE_2035.1 PF00155 Aminotransferase class I and II APE_2037.1 PF02654 Cobalamin-5-phosphate synthase APE_2039.1 PF03186 CobD/Cbib protein APE_2044.1 PF00586 AIR synthase related protein, N-terminal domain APE_2044.1 PF02769 AIR synthase related protein, C-terminal domain APE_2048 PF01717 Cobalamin-independent synthase, Catalytic domain APE_2048 PF08267 Cobalamin-independent synthase, N-terminal domain APE_2050.1 PF01717 Cobalamin-independent synthase, Catalytic domain APE_2050.1 PF08267 Cobalamin-independent synthase, N-terminal domain APE_2052.1 PF01926 50S ribosome-binding GTPase APE_2052.1 PF01018 GTP1/OBG APE_2052.1 PF09269 Domain of unknown function (DUF1967) APE_2060.1 PF17912 MalK OB fold domain APE_2060.1 PF03459 TOBE domain APE_2060.1 PF00005 ABC transporter APE_2062.1 PF00317 Ribonucleotide reductase, all-alpha domain APE_2062.1 PF03477 ATP cone domain APE_2062.1 PF02867 Ribonucleotide reductase, barrel domain APE_2064.1 PF02511 Thymidylate synthase complementing protein APE_2066.1 PF13439 Glycosyltransferase Family 4 APE_2067.1 PF00288 GHMP kinases N terminal domain APE_2067.1 PF08544 GHMP kinases C terminal APE_2068 PF01053 Cys/Met metabolism PLP-dependent enzyme APE_2071.1 PF00156 Phosphoribosyl transferase domain APE_2072.1 PF00118 TCP-1/cpn60 chaperonin family APE_2074.1 PF00579 tRNA synthetases class I (W and Y) APE_2078 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APE_2080.1 PF00293 NUDIX domain APE_2081.1 PF02073 Thermophilic metalloprotease (M29) APE_2085.1 PF01132 Elongation factor P (EF-P) OB domain APE_2085.1 PF09285 Elongation factor P, C-terminal APE_2085.1 PF08207 Elongation factor P (EF-P) KOW-like domain APE_2086 PF01171 PP-loop family APE_2090 PF02223 Thymidylate kinase APE_2091.1 PF00480 ROK family APE_2094.1 PF01202 Shikimate kinase APE_2104.1 PF01261 Xylose isomerase-like TIM barrel APE_2105.1 PF01048 Phosphorylase superfamily APE_2106.1 PF00294 pfkB family carbohydrate kinase APE_2108 PF00108 Thiolase, N-terminal domain APE_2108 PF02803 Thiolase, C-terminal domain APE_2109 PF00919 Uncharacterized protein family UPF0004 APE_2109 PF01938 TRAM domain APE_2109 PF04055 Radical SAM superfamily APE_2121.1 PF02347 Glycine cleavage system P-protein APE_2124.1 PF02347 Glycine cleavage system P-protein APE_2125.1 PF00578 AhpC/TSA family APE_2126.1 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II APE_2126.1 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase APE_2126.1 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg APE_2128 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APE_2130.1 PF00202 Aminotransferase class-III APE_2136.1 PF16868 NMT1-like family APE_2139a PF02416 mttA/Hcf106 family APE_2142.1 PF03951 Glutamine synthetase, beta-Grasp domain APE_2142.1 PF00120 Glutamine synthetase, catalytic domain APE_2144.1 PF00270 DEAD/DEAH box helicase APE_2144.1 PF00271 Helicase conserved C-terminal domain APE_2144.1 PF08494 DEAD/H associated APE_2147.1 PF03972 MmgE/PrpD family APE_2153.1 PF16200 C-terminal region of band_7 APE_2153.1 PF01145 SPFH domain / Band 7 family APE_2154.1 PF00902 Sec-independent protein translocase protein (TatC) APE_2154a PF02416 mttA/Hcf106 family APE_2154b PF00005 ABC transporter APE_2154b PF08352 Oligopeptide/dipeptide transporter, C-terminal region APE_2156.1 PF16123 Hydroxyacylglutathione hydrolase C-terminus APE_2156.1 PF00753 Metallo-beta-lactamase superfamily APE_2158.1 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APE_2158.1 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APE_2158.1 PF02770 Acyl-CoA dehydrogenase, middle domain APE_2162.1 PF13722 5TM C-terminal transporter carbon starvation CstA APE_2162.1 PF02554 Carbon starvation protein CstA APE_2164.1 PF17886 HSP20-like domain found in ArsA APE_2164.1 PF02374 Anion-transporting ATPase APE_2165 PF17886 HSP20-like domain found in ArsA APE_2165 PF02374 Anion-transporting ATPase APE_2166 PF01411 tRNA synthetases class II (A) APE_2166 PF02272 DHHA1 domain APE_2166 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APE_2173.1 PF00687 Ribosomal protein L1p/L10e family APE_2174 PF03946 Ribosomal protein L11, N-terminal domain APE_2174 PF00298 Ribosomal protein L11, RNA binding domain APE_2188.1 PF08494 DEAD/H associated APE_2188.1 PF00271 Helicase conserved C-terminal domain APE_2188.1 PF00270 DEAD/DEAH box helicase APE_2192.1 PF01336 OB-fold nucleic acid binding domain APE_2192.1 PF00152 tRNA synthetases class II (D, K and N) APE_2200 PF00710 Asparaginase, N-terminal APE_2200 PF17763 Glutaminase/Asparaginase C-terminal domain APE_2202 PF02934 GatB/GatE catalytic domain APE_2202 PF02637 GatB domain APE_2208.1 PF00437 Type II/IV secretion system protein APE_2213 PF01799 [2Fe-2S] binding domain APE_2213 PF00111 2Fe-2S iron-sulfur cluster binding domain APE_2216.1 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase APE_2216.1 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain APE_2219 PF00941 FAD binding domain in molybdopterin dehydrogenase APE_2219 PF03450 CO dehydrogenase flavoprotein C-terminal domain APE_2220.1 PF05496 Holliday junction DNA helicase RuvB P-loop domain APE_2220.1 PF05491 RuvB C-terminal winged helix domain APE_2220.1 PF17864 RuvB AAA lid domain APE_2227 PF02625 XdhC and CoxI family APE_2227 PF13478 XdhC Rossmann domain APE_2239.1 PF08240 Alcohol dehydrogenase GroES-like domain APE_2239.1 PF00107 Zinc-binding dehydrogenase APE_2242.1 PF10609 NUBPL iron-transfer P-loop NTPase APE_2242.1 PF01883 Iron-sulfur cluster assembly protein APE_2247 PF02245 Methylpurine-DNA glycosylase (MPG) APE_2248.1 PF00155 Aminotransferase class I and II APE_2252.1 PF00528 Binding-protein-dependent transport system inner membrane component APE_2257 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APE_2258 PF00528 Binding-protein-dependent transport system inner membrane component APE_2260 PF12911 N-terminal TM domain of oligopeptide transport permease C APE_2260 PF00528 Binding-protein-dependent transport system inner membrane component APE_2261.1 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APE_2261.1 PF00005 ABC transporter APE_2263.1 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APE_2263.1 PF00005 ABC transporter APE_2272.1 PF00005 ABC transporter APE_2273.1 PF00085 Thioredoxin APE_2277.1 PF00795 Carbon-nitrogen hydrolase APE_2278 PF00578 AhpC/TSA family APE_2278 PF10417 C-terminal domain of 1-Cys peroxiredoxin APE_2279.1 PF02190 ATP-dependent protease La (LON) substrate-binding domain APE_2279.1 PF00004 ATPase family associated with various cellular activities (AAA) APE_2279.1 PF05362 Lon protease (S16) C-terminal proteolytic domain APE_2281.1 PF01467 Cytidylyltransferase-like APE_2281.1 PF00294 pfkB family carbohydrate kinase APE_2284.1 PF00501 AMP-binding enzyme APE_2284.1 PF13193 AMP-binding enzyme C-terminal domain APE_2286 PF00291 Pyridoxal-phosphate dependent enzyme APE_2290.1 PF07676 WD40-like Beta Propeller Repeat APE_2290.1 PF00326 Prolyl oligopeptidase family APE_2291 PF00483 Nucleotidyl transferase APE_2296 PF01488 Shikimate / quinate 5-dehydrogenase APE_2296 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APE_2296 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APE_2298.1 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APE_2298.1 PF03900 Porphobilinogen deaminase, C-terminal domain APE_2299.1 PF00202 Aminotransferase class-III APE_2300.1 PF00490 Delta-aminolevulinic acid dehydratase APE_2302.1 PF01409 tRNA synthetases class II core domain (F) APE_2305 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APE_2305 PF03484 tRNA synthetase B5 domain APE_2305 PF18262 Phe-tRNA synthetase beta subunit B1 domain APE_2308 PF02649 Type I GTP cyclohydrolase folE2 APE_2316 PF00291 Pyridoxal-phosphate dependent enzyme APE_2317.1 PF00749 tRNA synthetases class I (E and Q), catalytic domain APE_2328 PF03129 Anticodon binding domain APE_2328 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APE_2328 PF09180 Prolyl-tRNA synthetase, C-terminal APE_2341 PF03099 Biotin/lipoate A/B protein ligase family APE_2341 PF10437 Bacterial lipoate protein ligase C-terminus APE_2342.1 PF03099 Biotin/lipoate A/B protein ligase family APE_2344.1 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family APE_2344.1 PF04055 Radical SAM superfamily APE_2347.1 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APE_2347.1 PF00364 Biotin-requiring enzyme APE_2347.1 PF02817 e3 binding domain APE_2348 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APE_2349.1 PF00156 Phosphoribosyl transferase domain APE_2350.1 PF00857 Isochorismatase family APE_2354 PF00441 Acyl-CoA dehydrogenase, C-terminal domain APE_2354 PF02770 Acyl-CoA dehydrogenase, middle domain APE_2354 PF02771 Acyl-CoA dehydrogenase, N-terminal domain APE_2362.1 PF01256 Carbohydrate kinase APE_2362.1 PF03853 YjeF-related protein N-terminus APE_2366.1 PF03144 Elongation factor Tu domain 2 APE_2366.1 PF09107 Elongation factor SelB, winged helix APE_2366.1 PF09106 Elongation factor SelB, winged helix APE_2366.1 PF09105 Elongation factor SelB, winged helix APE_2366.1 PF00009 Elongation factor Tu GTP binding domain APE_2374 PF04760 Translation initiation factor IF-2, N-terminal region APE_2374 PF00009 Elongation factor Tu GTP binding domain APE_2374 PF11987 Translation-initiation factor 2 APE_2377 PF00334 Nucleoside diphosphate kinase APE_2381.1 PF02667 Short chain fatty acid transporter APE_2392.1 PF08351 Domain of unknown function (DUF1726) APE_2392.1 PF13718 GNAT acetyltransferase 2 APE_2392.1 PF05127 Helicase APE_2392.1 PF17176 tRNA-binding domain APE_2397 PF03481 Putative GTP-binding controlling metal-binding APE_2397 PF01300 Telomere recombination APE_2400.1 PF08543 Phosphomethylpyrimidine kinase APE_2406.1 PF00005 ABC transporter APE_2408.1 PF00005 ABC transporter APE_2414.1 PF01554 MatE APE_2418.1 PF01012 Electron transfer flavoprotein domain APE_2419 PF01012 Electron transfer flavoprotein domain APE_2419 PF00766 Electron transfer flavoprotein FAD-binding domain APE_2421 PF01494 FAD binding domain APE_2423 PF00266 Aminotransferase class-V APE_2433.1 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APE_2433.1 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APE_2433.1 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APE_2433.1 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APE_2437.1 PF01791 DeoC/LacD family aldolase APE_2439 PF00288 GHMP kinases N terminal domain APE_2439 PF08544 GHMP kinases C terminal APE_2439 PF10509 Galactokinase galactose-binding signature APE_2441.1 PF07676 WD40-like Beta Propeller Repeat APE_2441.1 PF00326 Prolyl oligopeptidase family APE_2446 PF05167 Uncharacterised ACR (DUF711) APE_2450.1 PF00883 Cytosol aminopeptidase family, catalytic domain APE_2450.1 PF02789 Cytosol aminopeptidase family, N-terminal domain APE_2452 PF00117 Glutamine amidotransferase class-I APE_2452 PF00958 GMP synthase C terminal domain APE_2452 PF02540 NAD synthase APE_2458 PF03952 Enolase, N-terminal domain APE_2458 PF00113 Enolase, C-terminal TIM barrel domain APE_2464.1 PF02562 PhoH-like protein APE_2464.1 PF13638 PIN domain APE_2465.1 PF01189 16S rRNA methyltransferase RsmB/F APE_2465.1 PF01029 NusB family APE_2468.1 PF01144 Coenzyme A transferase APE_2474.1 PF01434 Peptidase family M41 APE_2474.1 PF06480 FtsH Extracellular APE_2474.1 PF17862 AAA+ lid domain APE_2474.1 PF00004 ATPase family associated with various cellular activities (AAA) APE_2486.1 PF08704 tRNA methyltransferase complex GCD14 subunit APE_2489.1 PF00571 CBS domain APE_2489.1 PF01380 SIS domain APE_2495.1 PF01230 HIT domain APE_2497 PF01914 MarC family integral membrane protein APE_2507.1 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APE_2507.1 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APE_2507.1 PF01842 ACT domain APE_2509 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APE_2509 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APE_2509 PF00205 Thiamine pyrophosphate enzyme, central domain APE_2516 PF00005 ABC transporter APE_2516 PF13732 Domain of unknown function (DUF4162) APE_2520.1 PF17645 Arylmalonate decarboxylase APE_2521.1 PF13458 Periplasmic binding protein APE_2522.1 PF02653 Branched-chain amino acid transport system / permease component APE_2524.1 PF00005 ABC transporter APE_2524.1 PF12399 Branched-chain amino acid ATP-binding cassette transporter APE_2526 PF00005 ABC transporter APE_2528.1 PF01968 Hydantoinase/oxoprolinase APE_2528.1 PF05378 Hydantoinase/oxoprolinase N-terminal region APE_2533.1 PF03190 Protein of unknown function, DUF255 APE_2538 PF03553 Na+/H+ antiporter family APE_2540.1 PF03129 Anticodon binding domain APE_2540.1 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APE_2540.1 PF04073 Aminoacyl-tRNA editing domain APE_2546 PF00218 Indole-3-glycerol phosphate synthase APE_2548 PF00291 Pyridoxal-phosphate dependent enzyme APE_2550 PF00290 Tryptophan synthase alpha chain APE_2551 PF00591 Glycosyl transferase family, a/b domain APE_2551 PF02885 Glycosyl transferase family, helical bundle domain APE_2553.1 PF04715 Anthranilate synthase component I, N terminal region APE_2553.1 PF00425 chorismate binding enzyme APE_2555 PF00117 Glutamine amidotransferase class-I APE_2555 PF00591 Glycosyl transferase family, a/b domain APE_2555 PF02885 Glycosyl transferase family, helical bundle domain APE_2556.1 PF00384 Molybdopterin oxidoreductase APE_2556.1 PF01568 Molydopterin dinucleotide binding domain APE_2556.1 PF18465 Rieske 3Fe-4S APE_2563 PF00355 Rieske [2Fe-2S] domain APE_2575 PF00155 Aminotransferase class I and II APE_2579.1 PF00005 ABC transporter APE_2580 PF00753 Metallo-beta-lactamase superfamily APE_2580 PF01613 Flavin reductase like domain APE_2581 PF03099 Biotin/lipoate A/B protein ligase family APE_2583.1 PF00375 Sodium:dicarboxylate symporter family APE_2586.1 PF02653 Branched-chain amino acid transport system / permease component APE_2587.1 PF02653 Branched-chain amino acid transport system / permease component APE_2588 PF00005 ABC transporter APE_2595.1 PF00581 Rhodanese-like domain APE_2598 PF06463 Molybdenum Cofactor Synthesis C APE_2598 PF04055 Radical SAM superfamily APE_2604 PF00501 AMP-binding enzyme APE_2604 PF13193 AMP-binding enzyme C-terminal domain APE_2604 PF16177 Acetyl-coenzyme A synthetase N-terminus APE_2604a.1 PF16177 Acetyl-coenzyme A synthetase N-terminus APE_2604a.1 PF00501 AMP-binding enzyme APE_2604a.1 PF13193 AMP-binding enzyme C-terminal domain APE_2605.1 PF13247 4Fe-4S dicluster domain APE_2610 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APE_2610 PF00384 Molybdopterin oxidoreductase APE_2610 PF01568 Molydopterin dinucleotide binding domain APE_2615.1 PF07690 Major Facilitator Superfamily