  APE_0006.1    3195 ..    3207 +  -4.1  -3.54919   TTTCCTTAATGTCAA                TACTC CCT GAGTG                TTTACAACCCTACTT  52 384
  APE_0007.1    5909 ..    5923 +  -2.1   -4.4874   ACTGTAATTAACCTT               GGTGT CAATT ATACC               TTTTACATTTTTCAG  64 494
         fba NONE
    APE_0012    9961 ..    9975 +  -2.8  -2.66042   TTGCGTCATCCAATA               GAAACT CAT AGTGTC               CTTATGGTGGGTGTT  40 146
        ilvD   12061 ..   12073 +  -3.4  -3.53012   AGCTATTTCACCTAG                CTCT TCTCC AGAG                TTTGACCCAGGAGGA  49 434
    APE_0026 NONE
    APE_0028 NONE
  APE_0031.1 NONE
        pckA   22473 ..   22486 +  -2.5  -3.03443   ATTATCACATACCCA               TAAAA CCAA TTTTA                TATATATGATGGTGG  42 119
  APE_0035.1   23920 ..   23949 +  -2.1  -4.08945   GAGGCTAGATAGGTG       TAGCTGCTTGGCAG GCC CTCCC-AGAGGCTA       TTTTAAAGCCCTCGT  55 33
  APE_0038.1 NONE
  APE_0040.1 NONE
  APE_0043.1   26919 ..   26930 +  -4.4    -3.136   TATAGTTCTATATAG                TAGC ATGG GCTA                 TCTATTCACTATTGG  48 132
        pstS   28114 ..   28139 +  -3.9  -3.32844   TCTCGTACACGGGCT         GATGGTGCCCG GCCT TGGCCAGCATC          TTATACCGTGACCGA  48 24
        pstC NONE
        pstA NONE
        pstB   30650 ..   30663 +  -4.5  -2.82015   GCTAACCAAGAAGTT               CCTCG GAGG TGAGG                TCTAGTGAGTGTAGA  45 7
    APE_0051   31405 ..   31425 +  -2.5  -3.40566   TAAGAGGCTTCCATC            GCCTATTGT TCA ACAACAGCC            TTCTCACTATCGTAT  46 157
  APE_0057.1   40381 ..   40402 +  -2.9  -3.02511   CTGAGACGGCTGTTC           CTGGCCTCT TAAG AGGGGTCAA            TGTTGACGCACTACA  42 14
  APE_0060.1   41125 ..   41147 +  -7.2  -4.39568   AGTATACGCAATGCA           TAATTTACAA TAA TTGTAAATTG           TTTTGGTGTCTAGCT  76 44
  APE_0061.1 NONE
    APE_0063 NONE
    APE_0065 NONE
  APE_0067.1 NONE
   APE_0067a   46554 ..   46592 +  -6.9  -2.82668   TAAATTCTAAATACC  AGGTGC-TCTCGTTAA ACACCCCA TTAACGAGAGGCACCC   ATTTAAAGTTTAGCA  53 157
         dut   47142 ..   47176 +  -7.8  -2.99449   ACTTAGAATTAACCT     CTTTGGAGCCCCAGTA TGC TTTTGGGGACCCAAAG     TATGATTATATCCCC  57 59
    APE_0072 NONE
  APE_0073.1 NONE
        mogA   53935 ..   53961 +    -8  -4.46212   CCATACATTTTTTGA         GAAGGGCTCGAG ACT TTCAAGCTCTTC         TTTTATACTCGCGAG  78 169
        speH   54693 ..   54703 +  -3.2  -3.81853   AGGTGAGCCTTCTCC                 GTTC TCA GGAC                 TATTTTAGTGTTAGA  55 191
   APE_0085a NONE
    APE_0086   60419 ..   60430 +  -4.4  -4.66609   TCTCAGCCTTTAACA                GCTT CAAC AAGC                 TTTTTGGATAGAATG  70 43
  APE_0088.1 NONE
  APE_0089.1 NONE
    APE_0091   65509 ..   65533 +  -6.3   -3.3506   CACACTAGGGGGGCT          TTCCTCCTCGG TGT CCGGGTAGGGG          TTCTCGAGATTTGCC  56 173
  APE_0096.1   68736 ..   68767 +    -3  -3.61517   GACGAGAGTATAGAT      GTAGGATGTGTCTCT ACA ACGGGCACA-CCTGC      TTCTTCAAACAGCCT  49 288
  APE_0101.1   74770 ..   74787 +  -6.9  -3.79906   GATAAAGAGGGGTCA             GGAGGCT AGAC AGCCGCC              TTCTTATCAGCCTCC  64 17
        fdxA NONE
    APE_0105   77570 ..   77582 +  -3.3  -2.63596   TCCTGTAAGCCAGGG                CTGGG GCT CCAAG                TGCTATAGCATACAA  40 334
  APE_0116.1   86983 ..   86995 +  -4.7  -2.60763   GTGGAGCTAGGCTCA                CGGGG TGT CCACG                GTTATGGGATATACC  44 243
   APE_0116a   87495 ..   87509 +  -4.3   -4.4458   GTCGTAGGCAGGGAG               GCATA GGGTA TATGC               TTTGTTGTGTGTGTA  68 234
        radA NONE
    APE_0121   90715 ..   90726 +  -2.2  -3.49951   GCTTTAATGGTGGGG                GTGT TTGG ACGC                 TTGTCTAGGCATGTA  47 67
  APE_0122.1   91249 ..   91287 +  -4.5  -3.21218   GAGGAGGCAAGGAAG   GAGGGTGTTTAAACCGT GGAAA ACGGGTTCAACCACCTC   TTCATAATAACCCAT  50 14
    APE_0124   92257 ..   92269 +  -4.8  -2.82635   CTTATAGAGGCCACT                GGCT AGACA AGCC                TATAATCGTCCAAAT  45 20
  APE_0125.1   93852 ..   93863 +  -5.8  -2.66963   ATGGTGATAGATAAG                CGTG TGCT CACG                 GTGTTCTTGATCCTA  50 27
  APE_0126.1 NONE
    APE_0127 NONE
  APE_0129.1 NONE
  APE_0130.1   98343 ..   98357 + -12.8  -3.17794   AGCTTATGAGGGCTG               CGGGGC TAA GCCCCG               TCTTGGTCCTGGATT  79 369
  APE_0132.1   99214 ..   99234 +  -3.1  -2.63585   AGCCGCACGGCGATT            GGGGCGCGA ATT TAGCTTCCC            CTATTTAAGCTGTGG  40 76
        etfB NONE
        etfA NONE
  APE_0136.1  102323 ..  102333 +  -5.4   -2.7556   TAATGTACATTAAAC                 CATG TAG CATG                 TAGTTAAATCAAGTT  48 92
         ggt  103919 ..  103942 +  -3.8  -3.07043   GCCATACATTTACCA          CGCGGTATCA AGTT TGATGCTGCA           TGTTGGGGTGATCGG  46 65
  APE_0140.1 NONE
  APE_0141.1  106247 ..  106257 +    -4  -3.81755   TTCTAAATGTTACAA                 TCAA TGT TTGA                 TTATATTTAACCCAT  57 182
    APE_0142  107075 ..  107126 +  -5.9  -2.72991   GTTGCCCTCCGAGGT CCTCTCTCCCTGAGCTGCCA-CCTT CTCG AAGGATGGCAGGTCTGGGA-AGTGC TCCTTCAGCCTCTGC  51 237
    APE_0145  108733 ..  108756 +    -3  -4.72272   TTCACAATAACACTA          GGAGCTCTCC ATAT GTAGAGTACC           TTTTTAGTAAGAAGG  66 164
  APE_0147.1  110393 ..  110413 +  -2.5  -2.74792   TCTCCTCCTTTATCT            CCATGTC AGCGTAC GTCATGG            CTTTCACAATAGTCC  39 82
         nth NONE
  APE_0151.1  112055 ..  112069 +  -5.8  -3.58343   CACCGCCGTTAAATA               GTATTA TCC TAATAC               TTTCGCAGTGGTAGG  59 25
  APE_0152.1 NONE
   APE_0152a  113814 ..  113825 +  -7.2  -3.41936   CACTGATCTTTAAGT                CGGC GCCT GCCG                 TGTTTGAAATTAGTA  58 206
        lysS  122022 ..  122032 +  -4.6   -2.7419   AAGGTCTATCAGGGC                 GGGG CTC TCCC                 TAGTTAGCCTGGTCT  44 189
    APE_0167  125641 ..  125675 +  -7.8   -2.8474   GGAGGACTAGGGGTT    GGCTAGGCGGGCGCT TCTCCT AACTCCCGCC-AGCC     TCATTCTCGCTACAC  56 31
  APE_0176.1  130891 ..  130902 +  -5.8  -3.83502   TAAGAGCTTTGAGGG                CCCT GAAA AGGG                 TTTCATGTAGCGATA  61 273
      rpl38e  133527 ..  133537 +  -6.8   -4.4648   TCAACCCCATTTACA                 CTCC TGA GGAG                 TTTTATAATGCCGCT  76 171
  APE_0182.1 NONE
  APE_0183.1  136088 ..  136106 +  -5.3  -4.03234   TATGGCCGCGGTCAG            CCTGAGAG GGAG CTC-CAGG             TTTATATCGAGGAGG  64 108
    APE_0187 NONE
  APE_0188.1 NONE
         hjm  142548 ..  142558 +  -6.8  -2.73635   CGTCACCCACGTCCG                 GAGG GTA CCTC                 GTTTCAACCAGTTTA  51 256
  APE_0197.1  145033 ..  145053 +  -3.2  -3.75169   AGCCTCAGCTATGTC           GCCGCCGGA CTCC TCCAG-GGC            TTTCCTCGCCTCCTC  52 51
  APE_0199.1  146753 ..  146767 +    -7  -2.66964   ACCCTGTTTAAGTGG               GCCGGG CGT CCCTGC               TAGTCTCCTGGGTGG  52 74
    APE_0200  147452 ..  147477 +  -6.1  -2.60615   CCTGGGCCCTAACAA         AC-CTCTCCCAG AAG CTGGGAGGGAGA         CTCTTTAGGAGCCGT  50 98
  APE_0202.1  149113 ..  149129 +  -5.1  -3.26262   ATAGGTTTATGCCTG              GGTGG CTAACGT CCACC              GTTTTATCGAGTTTA  53 184
    APE_0207  151522 ..  151536 +  -3.5  -4.07568   GGGAGAGAGTCGAAA               TAGGG TGAAC CCCTG               TTTTAACCCAGACGC  59 23
    APE_0208  152478 ..  152499 +  -2.3   -3.0894   AGTCGAAATCCTTGC           TAGGCCT AGGGTGTG AGGTCTA            TTGGCTCAATGGTTA  42 10
  APE_0212.1  156222 ..  156232 +  -3.2   -3.3442   GGAGTGCTACGGGGC                 GTCG CCA TGAC                 TATTATCCTCTTGTA  47 458
  APE_0226.1  163899 ..  163910 +  -3.6  -4.08216   GGCCCGAGATACTGG                CGGC CCCG GTCG                 TTTTGGAAGCGATCA  59 158
       rpl3p  165079 ..  165108 +  -6.3  -2.82933   AAGCAAGCAGGGCGT       CTAGACCTCGGCG GTAC CGCGGAGGTGAAG        TGTGATGGCTTACAC  51 22
      rpl4lp NONE
      rpl23p  166588 ..  166612 +  -9.9  -2.89475   TACTGTGACGCGATC          TCCTCAGCCGC GCC GCGGCCGAAGA          TATAGTGTATGGATC  62 425
   APE_0240a  175098 ..  175108 +  -2.4  -3.42503   AAAGCCGTTGAAGAA                 CTCC CAG GGTG                 TTATGGGTCTTGGGA  46 58
  APE_0242.1  175562 ..  175576 +  -4.2  -2.86164   ACACGGCGATAGTTG               GGCTAG CCC CTATCC               TATAGTGATTGAAGC  43 158
  APE_0249.1 NONE
    APE_0252  181516 ..  181527 +  -2.2  -2.95384   CAAGACATTATCTAG                GTCT AGGC AGGC                 TGGTTTGGATGGTCT  41 60
    APE_0254  182498 ..  182527 +   -10  -4.45083   GTCGAAGCTGGTTCC       CAGGCCTTCTGC TGCCTC GCGGAAGGCCTC        TTTTCTAAATATCGC  88 280
    APE_0262  189146 ..  189160 +  -5.7  -3.06183   TGCCGTTCTCGTCTA               TAGCG CCTAC CGCTA               TTACCTCAGGGTAGG  49 416
    APE_0265  192105 ..  192122 +  -7.1  -3.67417   CTTCTTTTTCTTTCA             CGTTAAA AAAG TTTAACG              TTTGACATTAGCTCT  64 60
         aor  195811 ..  195834 +    -3  -3.30159   CCAGAGTTTGAAGCA          GGCCAG-AGGG TTA CCCTGCAGGGC          TTCTCCCCCCGTTCC  45 463
 APE_0266a.1  196670 ..  196727 +  -8.5  -3.14051   CTATTCCCTCGCGTA CTGGGGG-CTATCCAGTCCTCTTCACTA ATC TAGTATAGAGGAGTGTGTGGACTCCCAG TGTTACTAGGCCTAC  62 271
  APE_tRNA04  198800 ..  198824 +    -5  -3.21772   TGAACTCGATTATTT         CTCCCGGCTCA GCCA TGAGC-GGTAG          TGTTGTGAAGAGCTT  49 299
  APE_0283.1  209340 ..  209359 +  -3.6  -3.66356   CCCCTATACTTCCTA            CG-GACTTT CAT AAGGTCGCG            TTTACCGTTACCACT  54 525
    APE_0287 NONE
    APE_0288  211670 ..  211680 +  -3.2  -4.08945   ATCCCCTGTGTAGGC                 GTAG TAC CTGC                 TTTTAGCGACATACT  58 438
  APE_0294.1  214315 ..  214326 +  -4.4  -3.54424   CCCCGGGTGGCCGGT                GCTA TAGC TAGC                 TTTACACCGCTGGAG  53 331
  APE_0306.1 NONE
        eapA NONE
  APE_0309.1 NONE
         mcl NONE
  APE_0313.1  228877 ..  228890 +  -3.1  -4.15698   TAGGTGGTGAGGGCG               TCTTG GGCG CAAGG                TTCTTTGTGTCCGTG  59 87
  APE_0314.1  229742 ..  229765 +  -5.2  -4.20868   CTCCCCAGCCGGGAG          GGCGGGCTCT CGCC AGAGTCTCCC           TTATTATTTTCGCCG  66 58
  APE_0321.1  233936 ..  233954 +    -3  -2.79183   CCATTAGTATGTAGA             GAGCCC TGTCCTC GGGCCC             TCTAATACCCCTCCC  41 162
    APE_0325  236290 ..  236312 + -12.7  -3.28712   TAGGAGCCCTATGCT           CAGCCCCCT TGGGC GGGGGGCTG           TTGTGGCGGGCCCGC  81 144
         dcd  240967 ..  240979 +  -4.8  -2.64099   AGAGCCTCCGGGTAG                GCTC ATGTA GAGC                ATTGTCGTGGAGAGG  43 489
  APE_0338.1  246274 ..  246286 +  -5.5  -3.20322   TGTAGCCGTTCACGG                GGGTG GCC CATCC                TATCTTCTCCTCGAA  51 351
  APE_0381.1 NONE
    APE_0382 NONE
  APE_0383.1  269265 ..  269282 +  -7.7  -2.76815   GTCGTTAAGCAAGTG             GGGTGGA CTCC TTCACCC              GTTCTTAGCCAGGGT  56 81
    APE_0384  270770 ..  270782 +  -7.7  -2.57463   CCAGAGCCCTGAGGT                CCTCT AGC AGAGG                CTTGTGCGCCCCCTT  53 337
   APE_0401a  278243 ..  278257 +  -5.7  -3.05463   GCTTGTCCAGAATGC               TCCTC ATATC GAGGA               TTGACTGGACAAGCT  49 281
    APE_0412  284150 ..  284173 +  -2.6  -4.65747   GGTCACCGGGTTAGG          TTTATAA-GCT TAA AGCCTTATAAG          TTTTATTGGGGATTC  65 19
   APE_0416a  295763 ..  295774 +  -3.6  -4.97402   CTGCCATTGAGTCTC                CCCG GCTT TGGG                 TTTTTCTGGGTTTTG  74 270
   APE_0419a NONE
  APE_0420.1 NONE
    APE_0421  298110 ..  298126 +  -6.5  -3.11634   GGAGCTAGAGCAGGC              CTAGGAG CCT CTCCGAG              TTCAATGATATAGCC  56 22
  APE_0424.1 NONE
   APE_0424a NONE
  APE_0426.1  300602 ..  300612 +  -4.6  -3.05384   GTATATCTGGAGGTA                 GGTG CCG CGCC                 TTGGCTGGCAGCAGG  48 25
  APE_0427.1  301788 ..  301798 +  -6.8  -3.35774   AGGGTGCGAACCTGC                 CCTC TGG GAGG                 TTGTAGGCGTTTATC  60 517
  APE_0429.1  303802 ..  303817 +  -3.9  -4.25104   CCCCCGAGCCCCCTC              CCGGG GGGGTA CCTGG               TTTTGGTGCGCCAGC  61 41
    APE_0431 NONE
    APE_0433  304931 ..  304945 +  -2.8  -4.07568   ACCCGCTATAAACAC               CAGG GGAGCAG CCTG               TTTTAAGAACGGAAC  56 45
        moeA  315762 ..  315772 +  -2.4  -4.56597   GGGGTTAGGGGGGCT                 GGCC TGA GACC                 TTTTTCGAAAACCCC  62 59
    APE_0457  319390 ..  319404 +  -7.1  -3.40566   ACAGCCTGGGCTACG               GGAGG AGATA CCTCC               TTATGGCTGTCCTCT  58 419
  APE_0460.1  320163 ..  320197 +  -3.5  -3.57615   CCCAGGCCTGCGGGC    CGCGTTAGACGGGCTA CATA TTGGCCGGCTAAC-CG     TTTAAGCCGTGTTAC  52 150
    APE_0461  320732 ..  320745 +  -2.4  -3.65201   GTATGTCGTAGCCGT               GCTT CTCAGC AAGC                TTCTTAGCCCTCTTA  51 54
  APE_0464.1  323264 ..  323277 +  -3.7  -3.54741   CACATACACCCCCGG               GGGGC TTCG GACCC                TTTCACCCGCTCATC  52 61
  APE_0468.1 NONE
  APE_0469.1  325823 ..  325839 +  -9.3  -4.18367   GGGCCGGTGTGGTAA              GCCCCGG GGG CCGGGGG              TTTATCTATGTGATA  79 273
   APE_0470a  327098 ..  327110 +  -6.9  -2.79183   CAACCTTTACCACCC                GGGCC TGA GGTCC                TCTCGTAGAAATGCA  53 94
   APE_0472c  330301 ..  330313 +  -3.3  -4.24338   AGCTTACGCTGTTCT                CTGGG CTC CCTGG                TTTTGGGCTATTTTT  59 39
  APE_0475.1  332618 ..  332628 +  -3.2  -3.32294   CGGAGGACCCCTTCG                 TAGC CAG GCTG                 TTATAACAAGTTTAA  46 9
  APE_0476.1  333387 ..  333402 +  -2.4  -2.77523   TGACAATACCGTCTA              GGGCTG CCCT CGACCC               TGATATTAATGCGGC  39 147
  APE_tRNA09  335199 ..  335212 +  -9.5  -3.09273   GAAGACGCGGCCCCT               GGGGC CGTA GCCCC                TGTGTCTTCCGAAGG  64 223
  APE_0485.1  338637 ..  338649 +  -6.2  -3.44051   ATACCACTTTAGCGC                GGCC TCCTT GGCC                TTCTCGTCGTCCACC  56 373
  APE_0488.1 NONE
    APE_0489  342250 ..  342270 +  -6.9  -3.55548   GAAGCCTAGGCTCCC            GGGTTCTAT ACC GTAGAACTC            TTTGAAAGCCTCTTC  60 127
  APE_0492.1  343812 ..  343833 +  -4.4  -2.93382   GTTTACCGGGGAGGT           GCTGCTAG CCTAGC CTAGAAGC            TCTCTGAATATGGAC  47 42
        rnhB NONE
    APE_0498  346718 ..  346730 +  -3.3  -3.30441   CTTGAATATTCAAGC                CAGCC CTA GCCTG                TTGTCCAACGTGCTA  46 100
  APE_0500.1 NONE
    APE_0502  348500 ..  348510 +  -6.8  -3.65522   CCTCCCTGCTGGCCT                 CCTC GAT GAGG                 TTCTTGACCTGGCTG  63 166
  APE_0508.1 NONE
  APE_0510.1  353083 ..  353095 +  -9.1  -3.08133   CTGCCTCTCCGCTAT                GCTCC CCG GGAGC                TTCACTGCATGGCTC  60 490
    APE_0514 NONE
  APE_0516.1 NONE
    APE_0517  356931 ..  356948 +  -6.9  -3.72027   GTCCCCACCCCAACC             GCCTCGC CGTG GAGAGGC              TTGTTCCTAGCGACT  63 275
        psmB  358694 ..  358712 +  -8.8  -2.72344   CTAGAGTGGGAGACG             CCCGGG AGAGATC CCCGGG             TCCTTGCGGGTCGCG  62 148
  APE_0522.1  360982 ..  360999 +  -4.1  -2.84634   CCTCGGCTACGCCAA             CCATAAC AGGC GTTCTGG              TCTCGTGGTATAGCG  43 184
   APE_0525a NONE
      rpl37e  362011 ..  362025 +  -7.8   -3.6003   CCCAATGCTGGGGCC               GGGGAG CCC CTCCTC               TTTGGCGCTCGTTTA  64 66
        pepQ  363456 ..  363469 +  -2.3  -3.18681   CCCTCGTGTACCCCG               CCTTC TCCA GCAGG                TTAATCAGGTTCAGC  44 278
  APE_0532.1 NONE
  APE_0534.1 NONE
    APE_0535  367581 ..  367592 +  -5.8  -2.72461   TTTAGACAGTCGTGC                CTGC TTGT GCAG                 CTTTCACCCGCCTTG  51 116
  APE_0537.1 NONE
      rpl13e  370855 ..  370869 +  -4.2  -2.79831   GCGGGCGTAGAGGTC               TAGACC CCG GGGCTA               TATACTACCACTTCG  45 23
  APE_tRNA13 NONE
  APE_0542.1 NONE
    APE_0543  374462 ..  374473 +  -7.2  -3.33492   CGTACCTCCTAAACT                CCGG GAAC CCGG                 TTGTCCGGTCCCTGA  61 524
  APE_0546.1  375926 ..  375949 +  -6.6  -2.53876   TGGGTGGAGCATGAA          GCTCCAGCCG CACC CGGCTAAAGC           TAAATTAAGCTGGGC  52 5
      rpl21e  376320 ..  376352 +  -2.5  -2.73875   GGGGCAGCTAGAGCT      GTCCCCACGGTTCCA CGC TGGAGTAGGGGGTGC      TAGTGTTGGAGAGGA  39 30
        rpoF NONE
    APE_0550 NONE
        ksgA NONE
  APE_0554.1 NONE
  APE_0555.1 NONE
    APE_0557  381114 ..  381126 + -10.5  -3.64703   CCTCTCATTCTGGAG                CCCCG TCT CGGGG                TTTAGGTCGAAGGGG  75 246
    APE_0560  383963 ..  383979 +  -6.5  -2.87132   GTTTGAGAGTATCTC              GCCCC TCAAGTC GGGGC              TGTCTGAGAGGACGG  51 163
  APE_0588.1  396273 ..  396291 +  -4.4  -2.87931   CTCGAACCACACCCT             CCAGACTC CTT GAGACCGG             TCTGTCACGCCTCCC  47 122
  APE_0594.1 NONE
 APE_0594a.1 NONE
  APE_0595.1  400806 ..  400822 +  -6.6  -2.54298   CCTCCTCTGAAGATT              GTTAGC CTGAC GCTAAC              CTCTTCTCCCCTATC  48 228
  APE_0597.1  402224 ..  402237 +  -9.5  -3.64487   TGTCTCCGGATTTTC               CCGGC TAAC GCCGG                TTATTAAACCTCTCG  74 359
   APE_0601a NONE
    APE_0603  405706 ..  405728 +  -9.8  -2.94218   GCCCCCAGCACTGGC           TCCGGCCTGC CGG GTAGGCTGGG           TATCTCCTGGAAGCT  62 292
   APE_0620a  426159 ..  426170 +  -5.8  -3.42078   AGCGCGTGCAGCGCG                GCCA GCTC TGGC                 TTCTCATAGGGTATG  57 314
        ahcY NONE
  APE_tRNA16 NONE
  APE_0628.1  429327 ..  429337 +  -2.4  -3.14344   CCTACACACTCATAC                 CCCG GTG CGCG                 TTGGTGAGACGCCTG  42 151
    APE_0630  430343 ..  430353 +  -4.6  -3.38072   TGAAGTAGAACTCGC                 CCGG CAC CTGG                 TTCGTCTTACCTCCC  51 407
    APE_0636  432247 ..  432268 + -18.7  -2.95073   GACTAGGCTCCGCGA           CCCCCCGGC GGGC GCCGGGGGG            ATTTACTATTCCAGG 100 70
    APE_0640  433533 ..  433564 + -10.1   -3.0094   TATAAAGGCCGTGGC      CGGGGAGTGAAGC TGGGGC GCTTCAGCCCCCG       TATATCTCCCTAGCC  67 16
  APE_0644.1 NONE
  APE_0648.1  436315 ..  436354 + -12.2  -2.67456   CGTCAGGCCCTAGAG  CCTGGAGAGCCTGGAG CCCAGCTC CTCCAGCCTCTCCAGC   ATTATCCTCCTCTCT  73 28
  APE_0661.1 NONE
        hisS NONE
        priB NONE
  APE_tRNA17  447323 ..  447350 +  -4.9  -2.74012   GCCAGCCTGGCCACC        TCGAAGC-TCCA CGACT TGGATGCTGCGA        TGCTTAGGCTCCTCA  44 500
    APE_0671  448893 ..  448905 +  -6.2  -2.79796   GGGGGGTATGATGCC                GGGG AAAAA CCCC                TATGGTAGGATGGCC  51 165
        atpI  452074 ..  452092 +  -4.4  -2.57132   ACCTTTTAGACGGTG             CTCACCCC CTT GGCGGGAG             GTTATAACAGGAGGG  44 32
        aspC  453749 ..  453774 +  -9.7  -3.31322   CCAGGCGACACTGAA         CACCCCCGG AAGGGAGC CTGGGGGTG          TTGTGAGGAGTTCAG  70 486
  APE_0680.1  456319 ..  456334 +  -3.2  -3.38046   TGGAGGGCGGTAGAG              GGTTCG TCGG CCAACC               TCTTTAACCTCCCAA  47 28
 APE_0680a.1  457164 ..  457177 +  -9.5  -3.57144   TTTCTAGGGAGCCTC               CCCCG TCGC CGGGG                TTTAAGACTAGGGAG  69 508
 APE_0682a.1  457885 ..  457896 +  -3.6  -3.53012   TGACCGACTTCTCGA                GGCT GGCG GGCC                 TTTAGGGGGCCCCAG  52 9
    APE_0683 NONE
    APE_0685 NONE
        mtnA  460317 ..  460343 +    -5  -3.00498   ACTATGGACCCTGAC         GGCAGTCTTACC TTC GGTAGGGAGGCC         TCTATCTCGCCTCTA  46 87
  APE_0689.1  463156 ..  463185 +  -3.5   -4.1585   TTGCGGGGACGGCGA       CGCTGGCCG CCCCGAGTATCA CGGCCACCG        TTTTAGCCCTTCTGG  60 368
         dys  467482 ..  467494 +  -5.5  -3.18912   TCGTCAACCTCGATC                TCCTC AAT GGGGA                TTACTCCGTAGCTGC  51 260
  APE_0702.1  468861 ..  468873 +  -9.1  -2.80816   TTGGCCTTCGGTGTT                GCGAG CCT CTCGC                TCTCGTAGCTCAGGG  58 351
  APE_0708.1 NONE
   APE_0708a NONE
  APE_0710.1  475135 ..  475149 +  -7.8  -2.85813   AGGAGGCCTTGCCCT               GGAGGC TGA GTCTCC               TACTCTTCTTGACGT  56 17
        trkH NONE
  APE_0716.1  479230 ..  479259 +  -8.5  -5.28176   AGCCGCTTAGGCTAT       GACGGAGCGGTGAC CTG GAC-CCGCTACGTC       TTTTTTGTCCCTGGA 100 140
    APE_0722  481547 ..  481567 +  -7.5  -3.45054   AAATCTATAATCTTA            TGCTGGGGG AGC TCCCTAGCG            TTATACCTTATAAAC  62 139
   APE_0728b  487408 ..  487421 +  -5.3  -3.22209   TAGGTGTACCCCCTC               CTAAG GTCT CTTAG                TATTAGCTTTGCTAT  51 345
    APE_0734 NONE
  APE_0735.1 NONE
    APE_0736 NONE
    APE_0737  491689 ..  491700 +  -7.2  -3.32202   AATGGAGATGCATGT                GGGG TGAA CCCC                 TCTTGTATGGAGCTG  61 44
    APE_0739  493613 ..  493632 +    -5  -3.71149   CCCTAACGTCTATCT            GTATCTCG CCCT TGAGATGC             TTCTCTATCTTCTCG  56 503
  APE_0745.1 NONE
  APE_0748.1 NONE
   APE_0748a NONE
    APE_0751 NONE
  APE_0754.1 NONE
  APE_0756.1 NONE
  APE_0759.1  501744 ..  501756 +  -5.5    -3.137   TAGGCCATCCCATAG                CTGTG AGC CACGG                TTAGCTAGTCTTCAT  51 63
  APE_0760.1 NONE
  APE_0761.1  503207 ..  503218 +  -7.2  -3.05384   GGGTTCCCGAGGGAA                GCCC CCAG GGGC                 TTCCGTAGGCGGCCC  54 283
  APE_0763.1  504627 ..  504644 +  -6.9  -3.25316   CAGGCGGGGGCCCGA             GCGCCTC CTAG GACGCGC              TGTATTATCTCTAGG  58 15
        speE  506377 ..  506408 +  -7.8  -3.07994   CGACAACCAGGTGTT      CCTCCCCGCGTAGC ACGT GAAACACGGGGGGG       TTCCATGGGGTTGGA  59 13
  APE_0768.1 NONE
  APE_0771.1 NONE
    APE_0772 NONE
  APE_0773.1  509652 ..  509665 +  -3.1  -3.95435   GCTCGAGGACCTCGG               TGGTA TACT TGCCA                TTGTGTTTTGACGGA  54 1
  APE_0774.1  511165 ..  511178 +  -6.7  -2.78547   GAACCCTCCCCTTCA               GGCTT TTTA AAGCC                TCCTTCGTAGCGTCC  49 346
    APE_0776  512279 ..  512295 +  -5.1  -3.88291   AATGGAGATGTTCGC              CTAGGCA TGG TCCCTAG              TTTCTCACCATGCTA  61 121
    APE_0778  514506 ..  514526 +  -2.4   -3.1506   TTAGTAGAGGGGCTA            GCACCATG CAGTC CAGGGAGC            TTCGTGAACAGCTTT  42 166
  APE_0781.1 NONE
        trm1  516475 ..  516496 +  -2.3  -2.77781   CTTCTTCCTATCAGT           C-GGCTCT GCGGGAA AGAGCCTG           TACGTTTTCCTACCG  39 186
  APE_0785.1 NONE
  APE_0786.1 NONE
         tfb  520440 ..  520469 +  -2.8  -2.71712   TAACCAGGGTTGTAA       TGGGAGGCTCGAG TTTTC CTCCCG-CTCCCA       CTTTACAGCCCAGCC  41 49
  APE_0788.1  521118 ..  521133 +  -2.5  -2.74144   AGTGCAGGAGCACTA              GAGCT ATATAA GGCTC               CTTTACGAGTCCACC  39 15
       rps8e  522012 ..  522028 +  -4.3  -4.32048   GTTTCAGCTCCTCCA              GGGTCAG GGG CTCGCCC              TTTTCCATCTTCTTC  65 457
        aoxA NONE
        aoxB NONE
        aoxC  528554 ..  528568 +  -2.8  -4.67982   TCCAATATTTTAGAC               TCGGTT TTC AAACGA               TTTTCTTCAATCCAA  66 160
  APE_0796.1  529851 ..  529870 +  -2.9  -3.10053   AACCTACCACTGGGG            CCTGCATA CCCCC TA-GCAGG            TATATTCCCGTCTGT  43 511
    APE_0798  530983 ..  530996 +  -4.5  -2.91912   CATTGCCCAAGACAC               CGTCT CCAG AGGCG                TGTATAGATAAGTAG  46 413
        surE  532634 ..  532653 +  -7.8  -3.62011   CGTAACAGCCTGAAG            GAGGCCTG TAAC CAGGGCTC             TTCTCCTTTGACTCT  62 43
  APE_0807.1  536919 ..  536929 +  -3.2  -3.47029   GTTGGTGTAAGCCCT                 TTCC ATG GGGA                 TTGGTCTTTGGCTAG  47 174
        thrS  538329 ..  538340 +  -5.8  -3.24747   GCGCCCAGGATACCG                GCTG ACTT CAGC                 TTCATGCTATAAGCA  55 2
    APE_0812 NONE
  APE_0813.1  540533 ..  540544 +  -7.2  -3.25919   AAACTAGTAGCTCGC                GGGG AACG CCCC                 TCTTCCTTACATACT  61 80
  APE_0815.1 NONE
    APE_0816  542599 ..  542613 +    -7  -2.64091   AGATCTGATACCACT               GGGGCC CAG GGCCCG               TCGTCTAGCCTGGTT  52 340
  APE_tRNA21 NONE
  APE_0818.1 NONE
   APE_0818a  544442 ..  544456 +  -7.8  -4.20712   GGGTGTGCCTGGGTG               GGGGTT AGA GACCCC               TTTTCCGGTGTTCTG  74 87
  APE_0820.1  544889 ..  544900 +  -3.6  -2.54896   GTCTCCAGGCTACTG                CGCC TCAG GGTG                 TGGGTTAGATGGCCG  42 6
    APE_0821  546079 ..  546093 +  -4.2  -4.49314   CTGCGAATATTAGTG               CTGGTT TGC AGCCGG               TTGTTTTTGCTGCTA  68 215
  APE_0825.1  548491 ..  548506 +    -4  -4.24745   AGAGGGAGGCTTTTT              GC-TCCA AGC TGGATGC              TTTCTATTACTCATG  61 511
   APE_0826a NONE
   APE_0826b NONE
  APE_0827.1  550414 ..  550430 +  -2.2  -3.30159   GCCACTTCGTCTTCT              CCTACT CGGAC AGGAGG              TTCTAGGGGCCTTGA  44 3
    APE_0830 NONE
  APE_0832.1 NONE
  APE_0833.1 NONE
    APE_0836 NONE
    APE_0837 NONE
    APE_0840  555478 ..  555488 +  -3.2  -3.48276   GTATCCTGGCGGCGT                 GCTT CTG GAGC                 TTCTCTAGACGCACC  47 7
   APE_0840a  555812 ..  555822 +  -2.4  -3.53012   GAGTACTACGTCTAG                 GGGG TGG CCGC                 TTTGAGGCCCGGCCC  47 26
  APE_0843.1  558633 ..  558658 +  -3.9   -3.1917   CTAGTGTGGGGGGTT         GCCGGTTTGAG GGCG CTCAACATGGC          TGTGTTCATCTTCCT  48 54
  APE_0847.1 NONE
  APE_0848.1 NONE
    APE_0850 NONE
   APE_0850a  559975 ..  559990 +  -2.5  -4.13014   TCTACACAGCTGTTT              TTGGC CCGGGT GCCAG               TTTTGAGGCTGTCAG  57 58
  APE_0852.1  561261 ..  561284 +  -3.8  -2.59935   GCCCAGGGGTTTGGA          CCTGTGATGCG CGG CGCCT-GCAGG          CTTCTGGCAGTGTTT  43 19
  APE_0855.1 NONE
    APE_0856  562415 ..  562429 +  -2.1  -4.72272   CCTCGGGCCTCGGCC               GGTTG ACGCA TAACC               TTTTTGGTGGGGGAG  65 82
    APE_0858  564143 ..  564157 +  -9.2  -3.32963   ACTCTTTCCACTGTT               CCCCCT CGT GGGGGG               TTGTCAGGTCGGGAT  67 118
    APE_0859 NONE
    APE_0860 NONE
  APE_0862.1  566235 ..  566264 +  -3.4  -2.56914   CCTAGCCCTCCCACA       CCCCGCGGCGCA TATCTT TGTGGTGCGGTG        TGGCTTGCTGGGCTG  40 36
  APE_0864.1  566671 ..  566684 +  -3.1  -2.73875   GGGCAGCCTCCCCTG               TGGTG AGAG CATCA                TCCTCTTGGGGCGGG  41 20
  APE_0865.1  567118 ..  567131 +  -4.5  -2.93073   CACCTCCGCATTTAT               GCTCT GGGG AGGGC                TGGTTGTTCGAGGGC  47 102
  APE_0867.1 NONE
   APE_0867a  568546 ..  568564 +  -5.2  -4.09243   GGGTGGCGGGTTGGA             CTGGGCGA GCG TCTTCCAG             TTTTACGCCCGTCTC  63 211
   APE_0867b NONE
  APE_0870.1  569834 ..  569847 +  -2.3  -3.72405   GTCTGGTCTATAGAG               TTGCC TAAT GGCTA                TTCTGATTTTGTCAC  51 502
 APE_0871a.1 NONE
  APE_0872.1  572663 ..  572675 +  -2.7  -3.64933   CAATAGCCGATAAAC                TTGTT TAT AACGA                ATTTTTTCCGCTTCA  51 238
  APE_0875.1 NONE
    APE_0878  574769 ..  574779 +  -6.8  -3.03441   AGAAGCTTCTTTAGG                 GCAG AGT CTGC                 TGTTGGGAGGTGATG  56 2
  APE_0879.1 NONE
    APE_0880  578290 ..  578331 +  -8.3  -3.09803   GCTTTATTAGGTTCC GTTATCATTCTATACTCTAG AAC CTAGAGTATAGG-TGATAGG TGTTGGGTGGGGTTC  62 477
   APE_0880b NONE
   APE_0880c NONE
    APE_0883 NONE
   APE_0883a  579500 ..  579526 +  -2.9  -2.78384   CAATACAGAGCTCAC         GCCATTCTAGG GGTGA CATTGGATGGC         TGTGCTGACGAGACG  41 16
   APE_0883b NONE
   APE_0883c  580010 ..  580030 +  -5.4  -2.52543   GCCCCCACGCTGTTC           GACGCGCCC TAGG GGGTG-GTC            TGGCTTGGCGGGCGT  47 14
  APE_0885.1 NONE
   APE_0885a  581040 ..  581065 +  -2.5  -4.43397   TCCTCTGTAGACTTT         CACAGAGAC-GA TTA TCTGTCTCAGCG         TTCTTTGTTTTCGAA  60 453
  APE_tRNA22  584335 ..  584346 +  -4.4  -3.85509   CTTATCCGATATTCT                GAAC CCGT GTTC                 TTTAAGTTCTCTTAG  59 138
    APE_0891  586391 ..  586403 +  -4.8  -3.28416   ACCCAGTACCTAGAC                TGGG GGTTG CCCA                TTGCTATGGATGCTG  50 140
  APE_0892.1  587571 ..  587590 +  -9.2  -3.08187   CGTCATAATAATGGT            GGGGGACC TGCC GCTCCCCC             TTCCGTCGGCTCTTT  65 120
  APE_0895.1  589139 ..  589174 +  -3.3  -4.27117   GATCGTTCAGCCCGT   CCGGCGT--CCTCCAGT ACGA ACAGGAGGGTATGCTGG    TTTCTATTATGGAGC  64 364
  APE_0898.1  592435 ..  592452 +    -2  -3.39449   ATATTGGAGTAAAGA             G-CTGCT TAGCC AGCAGAC             TTCATGTTCCTAAAA  46 149
  APE_0900.1  593213 ..  593226 +  -9.5  -3.19563   TGGGCTCGCTTGGCG               CGGCG AGGG CGCCG                TCTTCGTAGTATATG  66 199
  APE_0903.1 NONE
    APE_0906  595208 ..  595220 +  -6.2  -3.68378   TCGTGGAGGCCTGAG                GCCG AAAGG CGGC                TATTTTGGCCTCTCA  62 27
  APE_0907.1 NONE
    APE_0912  598044 ..  598057 +  -2.3  -3.05384   GGGATAAAGAGGGTT               TCCGG GGGA TCGGG                TTCCATGGCGGAGAG  42 82
        rpoK  598440 ..  598460 +    -4  -3.49653   GTGGTGTGTAAGCCG            CCTTGATA GACTG TGTCGAGG            TTGTCTCCAGATACT  52 92
  APE_0915.1  599595 ..  599615 +  -5.4  -3.32022   TACATGACGCCACAC            CCCTCACA TAGTC TCTGAGGG            TTACTGTCTCCACGC  53 111
        livK  602110 ..  602125 +  -3.9  -3.42301   CGGGTCATCTCCGCG              GGCGG CTGGGT TCGCC               TCTATTGTTATTTTT  50 118
        livG NONE
        livF NONE
        livH NONE
        livM NONE
  APE_tRNA23  606188 ..  606206 +    -3  -3.60151   CATTTCTAACACACA             CCCCTGGG GTG TCTAGGAG             TTGTCGTTTGAAAGG  49 99
  APE_0928.1  606662 ..  606674 +  -3.3  -3.30124   GGCGGCGTTCCTGAA                GGAAG TCT CCTCC                TTCTAGGGGGTAGGG  46 7
  APE_0929.1 NONE
  APE_0930.1  608544 ..  608561 +  -2.6  -5.11033   GCTGACAGGCTACAC             GGGCTC CATGTA GACCCC              TTTTTTACAGTTCTC  74 36
    APE_0934  611706 ..  611716 +  -5.4  -3.41051   TTCAGATATCTATCA                 CAAG CCT CTTG                 TTCTGATAGAAATCC  54 249
        hxlA NONE
    APE_0954 NONE
   APE_0954a  625580 ..  625592 +  -4.8  -3.31461   GCTGGCACCACGTCC                CCGT AGCCA ACGG                TTGTGGCGGTCACTA  49 349
    APE_0957  627562 ..  627573 +  -5.8  -2.79915   CCTGGGCCCGCCCAT                GGAG TAGC CTCC                 TATGCTGCCGTCGCT  51 524
  APE_0965.1  632810 ..  632826 + -11.5  -3.31269   CTTAATCCCCTCCAT              CCCGGGC ACT GCCTGGG              TTCGTATCATGTAGA  71 432
  APE_0969.1  636111 ..  636132 +  -4.3  -2.98823   CTCCCTCTATCTGCG           GGGTGATTG CTAG CCAGCACCC            TATGTCTAAACAACA  47 158
  APE_0972.1 NONE
  APE_0973.1  639225 ..  639239 +    -5  -3.60792   TTTCTACATAACAGG               CTCTAT ATA GTAGAG               TTTAGGGGTTGAAGG  56 495
   APE_0973b  639495 ..  639513 +    -3  -3.02293   TGATTGCATGTGGTG             TGTACGGG TAG CTCGTCCG             GTTCTTTCAATTTCC  42 90
  APE_0974.1  640503 ..  640517 +  -3.4  -2.78715   TGGTTACACCGTAGG               CCGCGG CAG CCATGG               TGTCCTGCACGCCTT  41 44
  APE_0985.1  648140 ..  648155 +  -6.8  -2.52464   TTATATAGATGGATG              GGAGGC TTCG GCCTTC               TGGATTGGGACGCGG  52 95
        ribB NONE
        ribC NONE
  APE_0989.1  650524 ..  650546 +    -9  -2.63913   TGGAAGCGCCAGCAG           GCCCCCCAGG GGG CCTAGGCGGC           TGGTGTGGGGTGCTC  61 8
        mtaP NONE
    APE_0994  652456 ..  652483 + -13.4  -3.05384   CGTGACGGTTGTCTC        GCCTCCCGCCAGC AGG GCTG-CGGGTGGC        TTCACTGGCACACCC  79 347
  APE_1007.1 NONE
   APE_1007a NONE
         pcm  660336 ..  660350 +    -5  -3.18738   TGTCTGTATTGTTTA               TCGTTT CGT AGACGA               CTTTTGCTGCTGATA  49 513
        dapA NONE
        helA  666157 ..  666189 +  -4.2  -2.90573   CTGCTGGCCGAGGCT     TCCTA-G-AGGGGAGG TGG CCTCCCGTGCCTAGGG     CTTTCCTGTGGCTGG  47 20
        helB  667052 ..  667062 +  -8.2  -3.32521   GCTTATCCTCTGCTC                 CCCC CGG GGGG                 TTCTGGAGATGTCGT  59 235
         cdd NONE
  APE_1040.1  670701 ..  670719 +  -3.1  -3.58726   GAGAGGGGGATGTAG             CCTCC CTTGACGCC GGAGG             TTCTGTCTGACAACC  49 26
    APE_1041  671622 ..  671646 + -12.9  -3.27475   GCCTCGTAGTTCTCC          TCCACAAGCTC TAG GAGCTTGAGGA          TCTTCTCATCCCCGA  79 443
    APE_1044  674159 ..  674176 +  -6.3  -3.44051   TCGTTGCTCCTAGCC             TCCTCCAC CAG GTGG-GGA             TTGTGCTCGTAGGCG  56 261
  APE_1047.1  676040 ..  676056 +  -3.7  -3.53091   TTGGGACGATAGGAT              TTGGATA CGG TGTCCAG              TTTGCAGGGCGGCAT  52 46
  APE_1049.1 NONE
  APE_1053.1 NONE
  APE_1055.1  679611 ..  679624 +  -8.1  -3.61398   CCTCGACGAGAGCGG               GCCTC TCAT GAGGC                TTCTTGGGGAGGGGC  62 411
        sucC NONE
        sucD  685827 ..  685844 +  -6.9  -2.87344   CCCCGAGACGAGTAT             GCCGACG TTTG CGTCGGG              TATGTCGAGGCCCTC  53 206
  APE_1080.1  688984 ..  688994 +  -4.6  -3.65351   GGGCCACGGAGACTA                 GGGT GCC GCCC                 TTTGGGTCGGCGTCC  56 295
    APE_1098 NONE
  APE_1106.1  699471 ..  699499 +  -9.5  -2.79501   GCGCCTGCCTCCTCG        CCTCGTCGAAGGC CGG GTCGTCGAAGAGG        TCTGCTGGGCCTATG  61 272
    APE_1113  701466 ..  701484 +  -7.4   -3.1637   CCTCTCCTCGAGCCC             GCCCAG CATGGCC CTGGGC             TTCCTGCCGGTGTAT  54 305
    APE_1117  703340 ..  703358 + -11.6  -3.32343   CGCCTCCCTGGCTAG             GGCGGCCG CCA CGGCCACC             TTCTGCAGCTCTCCC  71 425
  APE_1123.1  706111 ..  706136 +  -4.5  -3.14564   GTGGGCAACACCGTG         GGGGTGGGCCA GTAG TGCCCCTGCCC          TTCATAGACGACTCC  48 11
    APE_1127 NONE
        metG  708226 ..  708244 +  -5.2  -2.59971   TTTAATAGCCCTATA             GCCCATTG ACC CAGTGGGG             GTTGGTGTGTGATGA  47 59
      rps24e NONE
     rps27ae  708817 ..  708841 +  -9.2  -2.78935   AAGAAGTAGCAGGCA         AGC-CCCCGCC CCCG GGCGGGGGGCC          TCTACTCCAGGGTCT  62 32
         gcp NONE
  APE_1136.1 NONE
        ntpA  711112 ..  711122 +  -6.8   -3.0439   CTGGGGGAGTGGCTC                 TCCC GGA GGGA                 TCCTTTATAATCCCT  56 5
      rps15p  711799 ..  711837 +  -4.5  -3.03124   GCTCTAACACCTCCT  CCG-GCGGTGGAACGCTT AAAT AAGCCTTCGGCCCCCCGG   TATTCCCGGCTCCGA  48 174
        lysC NONE
         asd NONE
         hom  715276 ..  715292 +  -5.7  -3.06261   CCTCTAGATTACCCT              TCGGGTG CGG CTCCCGG              TGTTCAAGGTTAGGC  53 34
  APE_1147.1 NONE
   APE_1147a  717119 ..  717135 +  -9.3  -4.18367   GGGCCGGTGTGGTAA              GCCCCGG GGG CCGGGGG              TTTATCTATGTGATA  79 318
      rps3ae NONE
  APE_1156.1 NONE
  APE_1158.1  722895 ..  722907 +  -9.1  -2.87132   CCTGCCAGGGCGGCT                GCGAG GAC CTCGC                TGTCTAGAGGCACAG  63 518
  APE_1177.1  729680 ..  729699 +  -5.8  -2.83073   CCATAGAGGAGAAGA            TCTATCAT CCTT ATGATAGG             ATTCTTAATAAGAAT  51 262
  APE_1196.1 NONE
         sat  752231 ..  752242 +  -2.2   -4.0371   ATGCCCCGAGGTTCT                CTTC CCTT GAGG                 TTTATGTAAACCCTC  56 465
  APE_1202.1  754676 ..  754688 +  -3.3  -3.71607   GTATTTGGCATATTC                AACCG TCC CGGTC                TTTCCCTGGTGTTGG  52 59
        glmS  756676 ..  756711 +    -6   -3.5393   AGTAGAGTAAAGGCC    CCCCTCCAGCCACC GGGATAAG GGGGGATGGAGCGG     TTTGGAGGCCGTGGT  59 31
  APE_1208.1  757979 ..  758001 +  -2.1  -2.62712   CCTATTAACCTGAGC          TCAATAGAGGC TCT GCCTC-AT-GA          CTCTTGTATGTCCTC  39 200
   APE_1209a  759916 ..  759945 +  -6.5  -3.75378   TCTCTTTTCATGATT       GCTACTGTTAGAGC GTC GCTC-GGTAGTAGC       TTGTATTCTAGCGAT  61 152
   APE_1209d  760702 ..  760714 +  -2.7  -3.14683   TATACTTGAACGTGG                CATTT TGC GAATG                TTGCTAGAGCAGTAT  44 6
   APE_1209e NONE
   APE_1209f  761436 ..  761451 +  -5.4  -5.08824   AGCTCTCGGCGTGGG              CCC-GAG ACA CTCTGGG              TTTTTTGCATCAACC  83 230
  APE_1210.1 NONE
  APE_1211.1  764117 ..  764130 +  -3.1  -3.84674   CACTGTTGTTAACGA               TTAGC TCTT GCTAG                TTCTTCTGGTAGCGT  54 472
  APE_1213.1  768291 ..  768316 +  -6.7  -4.07885   GGGCTAACACCCCCC         CAGAGGGCGGC CCAG GATGCCCCCTG          TTTTCCCCGCGCCTG  69 34
    APE_1216  769999 ..  770009 +  -3.2  -2.73124   GCTGGCTAACTCTCT                 GGGT GCC ATCC                 CTTTAGCCACTACCC  41 55
    APE_1220 NONE
    APE_1221 NONE
  APE_1223.1  774759 ..  774772 +  -2.3  -2.62515   CACTAGGGACGAGGA               GGTCC TGGG GGAGC                TGCTGTGAGGGGCTT  39 4
        metC  776313 ..  776324 +  -3.6  -3.07443   AAACGCTGTAGACCA                GCCT CTGG GGGC                 TTGGGTAGAGTATGG  45 407
    APE_1248 NONE
    APE_1253 NONE
  APE_1255.1 NONE
    APE_1257  798688 ..  798705 +  -7.7  -2.85061   GGTTAGCAACGTCTT             TTGCGGC AAAG GCTGCAA              TGCTTCTAAAGTTCT  56 186
  APE_1258.1  799525 ..  799538 +  -2.3  -3.31792   CGGCTAGAACTGGCG               GCACC GGTG GGTCC                TTATGGAGATCCTCG  44 34
    APE_1260  800186 ..  800202 +    -5  -2.57211   CCCCCTCGGCCCATG              CCCGGG TGCCC CCCGAG              ATTGTGAAGCCGGGT  47 41
        czrB  801163 ..  801191 +  -3.2  -3.13164   AAGCGCCAATCCACA       CCCC-GCATTCTAC TGG GT-GAGTGTAGGGG       TTGGCTGATTGCAGA  44 45
  APE_1265.1  802343 ..  802357 +    -7  -2.87294   GCCCAATGCCACCGC               AGCCGC GAC GCGGCC               TATGCTGTCGCTCTT  53 133
        tnaA  807493 ..  807503 +  -3.2  -3.14132   ATGCCTCTAGAGGGG                 TGGG GAG CCTA                 TTGATCGGGGAGAAC  44 109
   APE_1275a NONE
   APE_1275b NONE
   APE_1275c NONE
    APE_1276 NONE
    APE_1281 NONE
  APE_1284.1  814052 ..  814063 +  -3.6  -3.35679   CACCTCTAGACCGCG                CGGG GTGC TCCG                 TTCTGCCTGGAGGAG  50 32
  APE_1285.1  815141 ..  815164 +    -6  -3.25823   CTGCCAACCCCACTA          TAGCCAGGCCT GCC AGGCCCG-CTA          TTACTGTGAGCCCGC  54 69
        narG NONE
        narH NONE
    APE_1297  823191 ..  823201 +  -4.6  -2.72954   ACTTGTATGACCCCG                 GGGG TTT TCCC                 TGATGTATCCTATTC  45 98
    APE_1298 NONE
        narJ  824829 ..  824844 +  -3.2  -3.57674   AGTATTGTGAGACCC              TCCTCC CTGT GGAGCA               TCTTTATAGTCGCGT  49 236
    APE_1310 NONE
  APE_1313.1 NONE
    APE_1315 NONE
    APE_1317 NONE
  APE_1319.1 NONE
  APE_1322.1 NONE
   APE_1322a  838086 ..  838104 +  -6.6  -4.11235   GTGTTACATAACACA             CGCTGGCT TGG AGCCCGTG             TTTCTATCCTCGTTG  69 68
  APE_1323.1  839061 ..  839086 + -13.3  -3.27051   CAATTTTTGGAATCC         CGTCTCCTCGG CTTG CCGGGGAGATG          TCTTGTCACCTTTCT  83 130
        hyuA NONE
        hyuB  844782 ..  844792 +  -5.4  -3.04398   ACCCCTAGGGATGAA                 GTGT TCT ACAC                 GTTTTGAACCCCGAA  51 33
    APE_1333  845168 ..  845184 +  -4.3  -3.02511   ACACGGCCCTAGGCC              CAGCCTA CGG TGGGCGG              TGTTAAACCCCTCCC  47 46
  APE_1335.1  846280 ..  846301 +  -4.3  -4.09864   CATCTCCCGGGCGGA           TCTCGCCAT CTTG AGGGCGAGC            TTTTCAAGGCTGAGT  60 49
  APE_1337.1 NONE
  APE_1339.1  849440 ..  849450 +  -2.4    -4.431   AACTTTATGATTCTG                 GGCC CCC GGCA                 TTTTATGGATGAATG  60 31
         rgy NONE
    APE_1343  854497 ..  854507 +  -2.4  -3.30441   ACAACTCTAGGCGGG                 GCGG CAA CCAC                 TTCTGACACATCCTG  44 9
 APE_1343a.1 NONE
    APE_1345  855515 ..  855544 +  -4.1  -3.00121   TGTTGTATGGAGACG       GTAGGGGTTTTGC GGCG GCTAGCCCCCTCC        TATCCTCTTTATAAT  45 22
   APE_1346a  857999 ..  858011 +  -3.3  -3.68366   AGCGGTCTGGGCTCC                GGCCT TCT AGCCC                TTCCTTTTAACCTCA  52 49
  APE_1353.1  862618 ..  862640 +  -2.8  -3.53444   ACCCCCCGTGTTTCA           GTAATCTA TCCTATC TAGGTTAC           TTTGGGCGCAGGTCG  49 69
  APE_1361.1  866222 ..  866235 +  -3.9  -4.58663   GCCGCTACGACTGTT               TATTC CTCT GAATA                TTTTTGACGCCTCGT  70 436
  APE_1363.1  867560 ..  867573 +  -2.4   -3.6993   TCTCCCAATAGTTCT               TGTC CACCGC GACA                TATTTTCCCTCGATA  51 252
    APE_1367  871888 ..  871912 +  -5.7   -3.6422   GCTCTCTTCCCCTCA          TGTAGCCCCAA GTC TTTGCGCTACA          TATTTTAGCAGACTG  59 91
  APE_1372.1 NONE
    APE_1373 NONE
   APE_1373a  874751 ..  874781 +    -6  -2.78384   AGGCTAGCTGTAGCT       GCGACCCCTCTC CGATGAT GGGTGGGGTAGC       TGTAATGCCGGGCGG  51 208
         rgy  878463 ..  878473 +  -2.4  -3.09492   AACTCGGGAAAAACT                 GGTG CCT CCCC                 TATTGGGGTTCGAAG  42 55
  APE_1380.1 NONE
  APE_1381.1  880358 ..  880373 +  -4.6  -3.45054   GTTTAATCTTGTTAC              TCCCCG GTTC CGGGCA               TTATAGCTTATAACC  52 65
    APE_1382  882209 ..  882234 +  -4.7  -4.13282   TATTACCAGGTCTAT         CTCGTC-CAGCA GTC TGCTGGGAAGGG         TTTTGGGGGTGTAAT  64 461
  APE_1386.1  884312 ..  884329 +  -5.6  -4.26589   TCAACAAGTCTGTAG             GACTTC CCTCCC GAAGTC              TTTTCAATCTCTAGT  69 172
  APE_1390.1 NONE
  APE_1395.1 NONE
    APE_1396 NONE
    APE_1399 NONE
  APE_1402.1  892919 ..  892932 +  -3.7  -3.24232   GCCTTGAGCTTGGCA               CCCGC CTGA GCGAG                TATGTTTAGGAAAAC  47 506
  APE_1405.1 NONE
  APE_1406.1  895392 ..  895403 +  -4.4  -3.36515   GAACCAATCCTCCCT                GAAG CTAT CTTC                 TGTTTAAGGCTAAGC  52 74
   APE_1406a NONE
  APE_1407.1  896932 ..  896949 +  -5.5  -2.88249   GTGTAGCCCCAATCA             GGGTCTC CCAC GAAACCC              TCTATCGCCACTCTC  48 324
  APE_tRNA26  899402 ..  899412 +  -2.4  -3.34398   AATGTAGTATACGGA                 GCTG ACG CCGC                 TGTTTACGAGGGCCA  46 385
  APE_1454.1  925628 ..  925649 +  -5.1  -4.07568   CACATTCCTAAAAGC           AGGAGAACG GAAT CGTTTTCCA            TTTTCCCCAGACCCC  63 71
        lysW NONE
        lysX  931581 ..  931593 +  -4.1  -3.49951   TACGTAGTGTCTAGG                GTTAG GCG CTAGC                TTGTCTCCACCTCTC  52 14
        lysJ NONE
        lysK  933889 ..  933903 + -12.8  -3.05463   CACAGACTGCCGAAG               CCCCGG CAC CCGGGG               TTCCATGGGGAGGGT  79 120
  APE_1470.1 NONE
  APE_1471.1  935225 ..  935241 +  -7.9   -3.2614   CCTATCTAGTGGCGA              CGCGGGG GTT CCTCGTG              TTCCTCTAGGGCGTC  61 32
  APE_1478.1  940445 ..  940459 +  -2.1  -3.02698   AGGCTACTCTAAACA              CC-GCT CCAA AGCCGG               GTTTATATGGGGTGA  42 29
        nudF NONE
  APE_1483.1  942081 ..  942099 +  -3.2  -4.06502   CATGTTTACCATAGA             TATCCT GCCCTAA AGGATA             TTTGGTTTAACACTC  56 157
   APE_1484a  944758 ..  944773 +    -9  -3.32202   TAATATCCTCTCCTC              CTACCC GCTT GGGTAG               TATTATCTGGCGGTA  67 117
        thrC NONE
        sirC NONE
        hemD NONE
   APE_1495a  949476 ..  949486 +  -5.4  -3.48395   AGCTGTTTCAAGACA                 GGTA GCC TACC                 TTATGTAGCCGGGCT  54 170
  APE_1503.1  953051 ..  953061 +  -6.8  -2.95884   AAGCTATACAGTCTC                 CCCT ATT AGGG                 TGTATAGCTTGGTCG  54 72
  APE_1505.1 NONE
        guaB NONE
  APE_1509.1 NONE
    APE_1512 NONE
  APE_1514.1 NONE
  APE_1516.1  958865 ..  958878 +  -5.9  -3.24825   GAGCACCACTATCTA               GCCTC CCCA GGGGC                TCTTGATTAGCGTAA  55 108
        ino1  960121 ..  960142 +  -2.2  -4.06678   GCTTAGCCCTCGCCT           CCACCTGC CTCTTT GTAGGTGC            TTTCTATGCATGCGT  55 35
         rfc NONE
        rfcL  963690 ..  963711 +  -5.1  -3.14564   TCTCCTCCGGGTCTC           CCTCC-TCAG CTT CAGAAGGAGG           TTCGTCGGCACCTCC  51 197
  APE_1528.1  966314 ..  966348 +   -10  -3.04931   GCATAGACCCACCTT     CCCATAGCCCTCTCCT CGT AGGGTAGGATTATGGG     TGTGTAGTTGTCTAG  66 474
       aif2b  968285 ..  968304 +  -4.2  -3.78775   ACGAGTCGAAGGTGT            GGTCTACG GCTA TGTAGCCC             TTTGATAGTAGGCCC  54 148
  APE_1535.1  970489 ..  970502 +  -3.1  -3.33261   GTGTGAGTGGTGCAT               C-GGCT TGA AGCCCG               TTCTCGCCGTTAACA  46 74
        tpiA  971244 ..  971288 +  -6.9  -2.62983   TCGAAGCCAACCTAG GGAGGTTCTCGAGGGCCAGAG TCG CTAGGGCCTCCTCGAGCCTCC TCCTATCGGCCTCCA  50 105
  APE_1545.1  975854 ..  975879 +  -7.5  -2.98223   AGTTACACGGGGCTT         GGAGGCC-CCTC CCG GCGGTGGTCTCC         TATCTCCTCTCCCTC  57 436
  APE_1548.1 NONE
  APE_1550.1  979972 ..  980004 + -19.9  -2.87344   TCTCTGGGGTGCGCC      TCCTCCGGGAGCCCG AGC CGGCCTCCTGGAGGA      TGTATGCGAGCGCTG 100 87
  APE_1557.1  983574 ..  983584 +  -6.8  -2.93817   CTATGTACTCTTTGT                 GGAG CCT CTCC                 TAATTGTTAAAAATT  54 525
    APE_1558  984864 ..  984878 +  -2.1  -3.98256   ATGCTAAACCCTCAA               CACTG TTAAT TAGTG               TATTTTTGATGCGGA  55 182
   APE_1558a NONE
   APE_1558b  985731 ..  985746 +  -3.3  -4.41206   CCCTGCTTACCCCCG              CAAGT TCTACT ACTTG               TTTTCTACCGTGCTT  66 257
  APE_1559.1  987202 ..  987215 +  -2.3  -3.83378   TAGTAGGTTGAGGGC               CCGCT AGGG AGGGG                TTATATGTTTTGAGG  53 77
   APE_1559a NONE
    APE_1561  988328 ..  988340 +  -5.5  -3.36327   GTGAGGTCCTCGCAG                CCCTT GGG AGGGG                TTGTGCGTAGCCTGA  53 400
  APE_1574.1  996932 ..  996945 +  -3.1  -4.28548   AGCATCGCCACAAAA               CTTCT TGAG GGAAG                TTTTGATACATGGCT  61 159
    APE_1585 NONE
        cysK 1007530 .. 1007551 +  -4.4  -2.85351   AACTAGTAGGCGGGC           GGCTTCAA GCTCCA TTGCAGCC            TCTGCTATCGGGAAG  44 305
   APE_1588a NONE
   APE_1588b NONE
  APE_1591.1 1009216 .. 1009232 +  -2.2   -3.5393   GAGCCCCAGGCTCCA              CCCC ATCTACCCC GGGG              TTTCAGGCGGGTGCT  47 39
        cysS NONE
    APE_1594 1011443 .. 1011453 +  -4.6  -3.59979   CGAGGACCTCGCCAG                 CCTC TAC GGGG                 TTTAGGGTCGAGCAG  54 10
  APE_tRNA30 1011643 .. 1011681 +  -7.3   -2.7044   AATCCCGGCGGGCCC  GCCACAACAGCCCCTCCC AAGC GGGGGTGGGTGTGG-GGC   TCCTATACTTGGATG  55 22
   APE_1594a 1012068 .. 1012087 +  -3.5  -3.37053   TGACAATATATTTCC            CCCGG ATAGAAACCC CCGGG             TTACTTAGGGTGTGT  50 63
         mat 1013654 .. 1013666 +  -4.7  -2.91429   GCGTCCACCCCGCAT                GGCCG CAG CTGCC                TCTCTAACCGTTTTC  46 349
   APE_1602a 1017230 .. 1017242 +  -9.1  -3.67558   CATTCCAAAGCATAT                GCCCA GCA TGGGC                TTCTTACCCTCTCTG  69 508
  APE_1605.1 NONE
   APE_1605a 1019583 .. 1019606 +    -3  -2.94416   ATCCTTGTAAGCCCT          GCTGAGCGGCG AGG CGCC-CACAAC          TATCTCCTCAAGGTC  42 76
  APE_tRNA31 NONE
    APE_1617 1027313 .. 1027327 +  -5.6  -3.08278   TGCCGGCAAGCACTA               TGAGCG GTA CGCCCA               TCTCTCTATACTTCA  49 452
 APE_1629a.1 NONE
  APE_1630.1 1036612 .. 1036634 +  -2.5  -2.92653   TATAGCTTGAGTTTG           GGGGAGAGG GTGGA CCGTGCCCC           TGTCTAGCCTTCTCC  41 153
    APE_1632 NONE
    APE_1633 NONE
  APE_1635.1 1039713 .. 1039726 +  -9.5  -3.53811   CCCTGGAGCTGGCCC               CCCCG GGCT CGGGG                TTTCCAACGCCTGGA  69 359
        glyS NONE
  APE_1644.1 1042836 .. 1042853 +  -2.6  -3.10715   GCCCCGGGATCTTAG             GGAGAC ACCGTA GCCTCC              TTCCATGCTCCTAGA  42 43
  APE_1645.1 NONE
        endA 1044007 .. 1044032 +  -6.1  -3.83026   TTCCCGGCGGCGAAG         TCGACGAG-GTC CTC GACGCTCGACGG         TTTAATATAGAAGGA  64 107
    APE_1652 NONE
    APE_1655 1048922 .. 1048935 +  -2.5  -4.36914   TTTGGGTTTATCGAG               TTTAT TTAA ATAAA                TTTTGTGAACCGGGA  60 43
  APE_1657.1 NONE
    APE_1659 1051061 .. 1051077 +  -4.3  -3.68529   ACCACCCACACAACA              TTTGGGG TGG CCCCGGG              TTTAAGTCCTCCAAT  56 489
         pth 1051896 .. 1051915 +  -6.4  -2.53382   CTCCACCTATAGCCC            CTGGGC GGGAGAAG GCCCAG             TGCCTTGAGCATGGT  48 409
  APE_1681.1 1060807 .. 1060828 +  -8.7  -3.36766   CTCTGCCAGCATCTT           GGCGAGAAG CAGC CTTCTAGCC            TTGACTTTCTCTGTG  64 213
  APE_1688.1 1064749 .. 1064762 +  -3.8  -3.15663   TGGAGGGTAGGGACG               GGTC GTAGTA GACC                TTGATACCCCTGAGT  46 51
  APE_1692.1 1067459 .. 1067516 +  -7.8  -3.24281   GAGGGCTTAACGGCT CACGTTTTCTGG-GAGAGTG-TCGCACCT TTG AGG-GCGATCACCCTCGCCAGCGTGCGTG TGCTTTTGTCTATGA  61 42
  APE_1693.1 1068239 .. 1068254 +    -9  -2.80821   CCGCCAGGAGGCGTC              GCCTAG GCGT CTAGGC               TAGTCTATTTAAGCC  62 20
  APE_1694.1 1068957 .. 1068971 +  -3.4  -2.85503   GAGAGACTCTTTATA               TCGGTG GTG CTCCGG               GTTTGCCTGTTAGAA  41 221
        gcvT NONE
    APE_1697 1070867 .. 1070902 +  -4.6  -3.29266   CCCTATCTGGAGCAC    CCTGTAGACGGGCTCG CGGG CTATCCCTTCTAGAGG     CTTTTGTCCTACTCT  49 424
        sufC 1073178 .. 1073188 +  -2.4  -2.50589   ATGTGACGATAAAAG                 GGGG GTG CGCC                 ATAGTTTATTTAACG  38 49
        sufB NONE
        sufD 1076312 .. 1076323 +  -2.2  -4.66537   TCTATTACATCTCTG                GCTT CTCC GAGC                 TTTTGTCTTGCACCA  66 461
    APE_1711 1079571 .. 1079582 +  -2.2  -3.21099   ATATTGTAAATTTGG                CTAC TGTG GTGG                 TTCCTCATGAGCCAG  44 128
        gltA 1081169 .. 1081183 +  -7.2   -3.5525   TCTATACGCTTCAAG               GGTTAT AGG ATAACC               TTTGGCCAGCTCTCT  60 421
    APE_1716 NONE
        gatA NONE
        gatB NONE
  APE_1719.1 1085835 .. 1085860 +  -2.5  -3.58343   CCTGTGGGGGAGGAG         GCTAACTCTGGC GCT GGCAGAGG-AGC         TTTCGCAGTAATGGC  47 152
    APE_1720 1086624 .. 1086639 +  -5.4  -3.77196   GCCCTTCCCATCTAA              TCCCAA AATT TTGGGG               TTTAATGGGTGGTGA  59 112
    APE_1721 1087410 .. 1087427 +  -2.1  -3.27786   GTGGAGGAGAGGAAA             TAGTGTTT AGA AAAC-CTA             TTAATCGCTTTTCGC  44 23
    APE_1722 1088695 .. 1088707 +  -3.3  -2.57132   CTATTTAATCTTAGA                GCGGT AGA ACCCC                CTTGTAAAGGGCGGG  40 71
   APE_1722a 1089350 .. 1089364 +  -5.6  -4.10925   AAAGCTGCCACACCT               CCGGCT GTA AGCAGG               TTTTCAAGCCTCTCT  66 171
        soxL NONE
        soxC 1092620 .. 1092639 +  -4.8  -4.05067   CACAATCGTATAGCC            AGGCCACG GTGT CGGGGCCA             TCTTTTTCTCCCCTA  61 80
  APE_1727.1 1093161 .. 1093172 +  -5.8  -2.79796   ATGCTGTTATATATC                GGAG GTAG CTCC                 TATCATGGCCTCCCA  51 56
    APE_1728 1094723 .. 1094739 +  -2.1  -3.28924   AACTCTTATCGCTAG              GGGGCTG AAC CAGGGCC              TTGTCCAGGCGGCTC  44 18
  APE_1730.1 NONE
    APE_1732 1098075 .. 1098092 +  -9.1  -3.00022   TACGCCAGCTTCGAG             GGGGCTG CCCG CAGCTCC              TATGTGTACCCTGCC  59 493
      rps13p NONE
       rps4p NONE
      rps11p NONE
        rpoD NONE
      rpl18e 1102428 .. 1102446 +    -3  -2.64107   CGCGCATAATAATAT             AGCCCTAG AGG CTAGGGGA             TAGTGTGGGGGTTTG  40 24
      rpl13p NONE
       rps9p 1103402 .. 1103423 +  -2.1  -2.62613   GTCGTACAGGTGACG           CTGGCATGC TACC GCCAGTCAG            GTGTTTCACATGCGG  39 28
        rpoN NONE
       rps2P 1104288 .. 1104302 +  -3.5  -4.26589   CCCCCTTTCCTGCAT               TAGCC CGAGA GGCTG               TTTTAGCTGTCTCGT  61 47
  APE_1758.1 1110831 .. 1110842 +  -5.8  -2.72799   GAAAGCATGTCTCTG                CAGG GGTG CCTG                 TAATATATGTCAACC  47 443
  APE_1779.1 NONE
        npdA 1123014 .. 1123038 +  -4.2  -3.78775   CCCTTTCCATGTTTC         CCCACC-CTCT AGGT GGAGAGGAGGG          TTTAATAGTGGAGCG  56 506
  APE_1789.1 1126630 .. 1126649 +  -4.9  -3.86524   CCGTACACCTCCGGC            GCGGCTC CGGCGA GGGCTGC             TTTCTCAGCAACTCT  59 440
        topA 1131031 .. 1131046 +  -6.1  -3.24924   GCGCTGAGAGACGAC              GGGCT GTACAA AGCCC               TATTGTGAGTCCGCC  55 2
    APE_1797 NONE
        fbpA NONE
  APE_1799.1 1134179 .. 1134194 +  -3.2  -3.69323   GCCGGCGCTACTGAC              CCTGGA GTTT TCCACG               TTTAAATCCTGCTAA  52 168
   APE_1799a 1134547 .. 1134567 +  -8.1  -3.83568   TCACGAGCCTCTCCC            CCGCGGGCG AGT CGCCCGGGA            TTATTATGACTCTCC  68 89
    APE_1807 1139979 .. 1139993 +    -7  -2.62184   CACCTGAGCCTACAA               GCGCGG GAG CCGCGG               TAGTATAGCCCGGCC  52 3
  APE_tRNA32 1140268 .. 1140280 +  -3.3  -3.55622   TGGCTCTGTTGACGG                TCCTG TTA CTGGA                TTTGAAGAGCTTAAG  49 229
    APE_1810 1142959 .. 1142985 +  -7.2  -2.90763   CGGTCTTCAACCCGT         CTTGCCCCTCTA GGC TAGGAGGGCTAG         TATGTCGCCTATCCC  57 498
        fumC NONE
  APE_1817.1 NONE
      rpl7ae NONE
        truD 1147813 .. 1147825 +  -7.7  -2.54566   AGTATAGTCGGACCA                GCCTT CGA AAGGC                CTCTTATCGAGTATT  53 186
    APE_1824 1151315 .. 1151330 +  -6.1  -3.14132   GTTGTGAACTGCGTC              GACGC CGAGGA GCGTC               TTCCTGACACCCAGG  52 404
        gyaR NONE
    APE_1832 NONE
        albA NONE
         prs 1159620 .. 1159634 +  -4.3  -3.31799   AAAGCTGGTGTCAAA               CCTTT GATGG AAAGG               TTCTACGCAATTCTA  50 19
    APE_1835 NONE
         rnz 1161726 .. 1161742 + -13.7  -2.96183   CTAGCCAGGCTAGAC              GACGGCC CCT GGCCGTC              TATCGTGTTCTATAC  77 148
  APE_1840.1 1163869 .. 1163886 +  -2.7   -3.2362   AGAACCCTCTCGTCC             GCTTCTA GGTC TATAAGC              CTTTTGTGAACCTTC  44 416
  APE_1848.1 1167280 .. 1167298 +    -3  -4.12603   GCCGTCCCTGGGTAC             GAAGGCCG TCA CCACCTTC             TTATTCTTTACTAGC  60 304
  APE_tRNA35 1176404 .. 1176426 +    -7  -2.64218   CCGCCCAAGGGGGCC           GAGCATAGGG CTC CTCTATCCTC           ATTGTCGTCCAAAGT  52 50
  APE_1861.1 1177740 .. 1177765 +  -8.9  -4.13728   GTTCCGGCTCATATA         GGCTGTTCTCG AACT CGAGTGCGGCC          TTTTCAAGATCTATA  78 295
  APE_1865.1 NONE
  APE_1874.1 NONE
    APE_1876 1188907 .. 1188919 +  -9.1  -2.53822   CAGTATCCTGAGGGC                GAGGC CTA GCCTC                CTCTTATCAACTAGC  57 67
        ctaB NONE
  APE_1880.1 1191727 .. 1191739 +  -4.1  -3.86346   AGCGCCCATTATACC                TGAGG TCT TCTCA                TTTATGAGAGACTCA  57 231
   APE_1882a 1194299 .. 1194314 +  -2.4  -3.06261   ACAAACAACCTTTCA              TGCAGG TGAA CCCGCG               TGTTCGAGATTACGC  42 72
    APE_1885 NONE
  APE_1886.1 NONE
  APE_1887.1 NONE
    APE_1889 NONE
   APE_1889a 1198535 .. 1198559 + -12.1  -2.60212   AGCCTCTAGAACATC          AGCCCTCGACT CCG GGTCGAGGGCG          CTTGTAGGCTCGTCG  69 238
    APE_1894 1201892 .. 1201934 +  -4.3  -2.82623   GGGGGTAGCTGGGTT GTGAGCTGTTGGAGTATGTT TGAG AATA-GCTCAAGCAGCTTAC TCATTATAAGCAGGA  43 381
    APE_1930 1222947 .. 1222958 +  -5.8  -4.36914   CGTGGCTGCGAGGTC                GCCT ACAG AGGC                 TTTTATGACGGCAAG  69 491
  APE_1936.1 1225877 .. 1225888 +  -3.6  -4.38712   GAGGACTCTCCAAGC                CGGG CACC CTCG                 TTTTCTCGCAGTCGG  65 340
        hxlB NONE
    APE_1941 NONE
  APE_1943.1 NONE
  APE_1946.1 NONE
    APE_1947 1230827 .. 1230857 +  -3.9  -3.14132   TGTAGTAATAAAGGT       GCCTTCCCCCC CAATATAGA GGACGGAAGGC       TTAGTAGCACAGGGA  46 7
    APE_1948 1231457 .. 1231468 +  -2.2  -2.89177   TGAACCCTGGCTTCA                GG-GC CTG GCACC                TCTCGTCTATAGCCT  41 87
  APE_1952.1 1234606 .. 1234622 +  -3.6   -3.1585   CAGCTATGGATACTA              GATGCC CCACC GGCCTC              TCTTCGCTTAACTGG  45 316
  APE_1955.1 1235834 .. 1235846 +  -4.8  -3.21276   ATATCCATGCCTATG                GGCT CGACA AGCC                TCTTCTCCACAAGAA  49 429
 APE_1956a.1 1237284 .. 1237295 +    -3  -2.60061   GGTATCGCTGTATTA                TTTG CTAA CAAA                 ATATTCTATGCCTGT  40 290
        glyA 1242350 .. 1242367 +  -7.7  -3.73414   TAATAGTAAACCACT             GCAGGCT TCTC AGTCTGC              TTTCCCTATCCTCTA  67 246
  APE_1963.1 1243622 .. 1243632 +    -4  -3.20703   GTAAAAACGCTACTG                 TACA ATA TGTA                 TTAATGCCTGCTTGT  48 11
  APE_1964.1 1244461 .. 1244477 +  -7.3  -4.32177   GGCTGCCCAACCTGC              GTTTGAG CCT CTCAAGC              TTTATTATAACGTCC  74 414
  APE_1973.1 1250607 .. 1250617 +  -2.4  -3.35679   CCCCCGGGGCTACTA                 CCGC CTT GCCG                 TTCTGGCTCGGAAGG  46 99
  APE_1975.1 NONE
        serS 1252926 .. 1252943 +  -6.2  -3.54307   GGCCGAAACCTTGGG             GTCGCC GTAGAA GGCGGC              TTTAAGCCAGGTGTT  58 259
  APE_1984.1 1255347 .. 1255362 +  -4.6  -4.22652   TCTTCCTGCCCCTCC              CCTCCG GGTG CTGAGG               TTTTGCCTGCTATAA  63 46
   APE_1984a NONE
        nadM 1257097 .. 1257131 +  -8.4  -3.62046   CGCCCTTCTCAGCAA     GGGGGACGAGGAGGTT GCT GGCCTCCTCGCCGACC     TTCTTGAAGAACTCA  66 507
    APE_1990 1258350 .. 1258384 +  -7.1  -3.07935   CTGCCCCCTCTTAGC    TGGGAGGCAGTGC-AT GAAT ATCGCTCTGCCCCCCG     TTGCCTCCATAAGCT  54 142
  APE_1995.1 1260342 .. 1260369 +  -3.3  -3.28447   AGAGCTTACACCCGG        CACCCCCAGGA CCATAA TATCGGGGGTG         TATTGTAGTAGATAC  46 237
         pan 1269575 .. 1269603 +   -13   -3.9398   TTCAACCCTCCCACC        CCCACCAGGGGC CGCGC GCCCCCGGGGGG        TTTATGGGCTTCTAG  87 49
    APE_2017 1271895 .. 1271915 +  -7.5  -3.44206   CCGGCCTCCATAGTG            GGGGCCT CGAGCTT GGGCCCC            TTGTAGTGCCTGTTC  58 316
  APE_2021.1 NONE
   APE_2021a 1273848 .. 1273862 +  -2.9  -3.02511   CTCTCAAATACTATA               TTGTA ATTGA TACAA               TGTTAAGAAACTAGC  42 115
    APE_2022 NONE
   APE_2022a 1275954 .. 1276005 + -13.1  -4.14739   GCGCAGTGTAGGCCT GTCCTCACG-GCTATGCC-CCTCCT GTCG AGGAGGAGGCCTAGCTCGTCGGGGC TTTTCAGGTGGGTGG  93 433
  APE_tRNA39 1277730 .. 1277746 +  -7.2  -2.76721   GACTTCCGCCTGCTA              GGCCCC TTGGT GGGGTC              TGCTTGCAATTCTAT  56 496
  APE_2029.1 NONE
  APE_2032.1 NONE
        cobY NONE
        cobD NONE
        cobS NONE
        cobD NONE
  APE_2041.1 NONE
  APE_2042.1 1286094 .. 1286138 +  -9.4  -2.65815   GAACGTCTTAACCCT GCC-CC-GG-CTGGAGAGCCT TAGAGC AGGCTCTCCTGACCTGGCGGC TACTCTGCCTATGAA  60 51
  APE_2052.1 NONE
  APE_2054.1 1291499 .. 1291532 +    -6  -3.09635   GCGTGTAGAAGTCGA     GGGCCCTGGA-GAGG TTTGC CTTTATCCAGTGCCC     TTCCATGCTGAACAT  52 443
  APE_2057.1 1293494 .. 1293510 +  -6.5  -2.71011   AGCCACCGGTATCTC              TGGCGAG CTG CTCTCCA              TACTTCACACCGACT  49 364
  APE_2059.1 1294711 .. 1294728 + -11.3  -2.62184   GCCCACCACCTGGTA             GCAGGAG GCAT CTCCTGC              TGCTGTCGAGGGGGA  66 435
  APE_2062.1 NONE
        thyX 1300525 .. 1300537 + -10.5  -3.05384   GGGTTCCCGAGGGAA                GCCCC CCA GGGGC                TTCCGTAGGCGGCCC  66 333
        thrB 1302905 .. 1302918 +  -2.3  -2.52896   CCTCGGTAGTGGGGT               GACCA GCCG TGGGC                TGGGTTACGAGATGG  38 24
        metB NONE
  APE_2069.1 1304927 .. 1304941 +  -7.8  -2.79501   CCATCACAGGGTCCT               CGCTGT CCG GCAGCG               TGTCATCGGGCTGTG  54 422
  APE_2072.1 1308021 .. 1308039 +    -6  -4.66953   GGAGAGGAGGAGTAA             ACCGTTAA ACA TTAACGGG             TTTTTAAACTATTAA  76 26
        tyrS 1309632 .. 1309649 +  -6.9  -4.39426   TCTCATCGTATCTGA             GGGGCGG TCTT TTGCCCC              TTTTCTCAGACTCTC  74 358
  APE_2077.1 NONE
    APE_2078 1313186 .. 1313199 +  -3.7  -3.61178   CAGCCGGGAGACTAA               GACCC TGGA GGGGC                TTTGGGATGGCTAGG  52 26
        nudF NONE
  APE_2081.1 1315269 .. 1315281 +  -7.7  -3.23869   CTAGGCTAGCCGAGA                CTCTC ACC GAGAG                TATTGTCGCGTGATC  59 425
  APE_2085.1 1316589 .. 1316604 +  -4.6  -3.51825   ACAACAGGCCCCATA              GGCCTC CCAA GAGCCC               TTCTGGTTACCCTGC  53 85
  APE_2087.1 NONE
    APE_2089 1319918 .. 1319939 +    -8  -2.70932   CCCTCTTATCAGCCG           GCCCACAGG CCCCT CC-GTGGGC           TCCTTCCAGAGGCAG  54 500
    APE_2093 1322983 .. 1323012 +  -2.8  -3.96148   TCAGGCCATCCCCTG       CCCTTCAG-CCTC TCCTC GAGGACTATAGGG       TTTGTCCTGAGAAGG  58 258
         udp NONE
  APE_2106.1 1330312 .. 1330346 +  -2.9   -3.4072   CCGCGCCGCCCAGGC    CGTGGCATATGGAGG CTACACC CCTCC-TA-GCCCCG    TTCTCCTCCAGCGTG  47 63
    APE_2110 NONE
  APE_2112.1 1334583 .. 1334593 +  -4.6  -3.28712   TGCCCATAGCCGCCG                 GGCC CAG GGTC                 TTCTGCACCACCAGG  49 313
  APE_2115.1 1336615 .. 1336628 +  -3.8  -3.34043   CCACCTAGACCAAAC               GGGT TTTTAC ACCC                TTGTGGGGTCATGGA  50 488
         bcp 1342686 .. 1342702 +  -6.5   -3.8917   GCCTGTTGTAGATCT              CCTTCAG CCT CTGCAGG              TTCTTCTCCTTGAAA  67 160
  APE_2126.1 NONE
    APE_2128 1345865 .. 1345879 +  -2.8  -3.61506   CTACGTGGCGATAGC               GGTC TAGAGGC GACC               CTTTTTTGAACATCG  49 42
  APE_2129.1 1346571 .. 1346589 +  -3.9  -3.61715   GGCATCGCCGTTGGC            TCTCAGAG CCTC CTC-GAGA             TTCTTGGGCCGCCTG  51 244
    APE_2133 1350202 .. 1350212 +  -2.6  -3.02916   TATCGGCAACTCACA                 TATA TAC TATA                 TCATTATTCTGTATT  42 91
  APE_2136.1 1351371 .. 1351397 +  -6.7  -3.16564   CAGCTTAAAGACGGG         GCAGTTTTCAA CCCCC TTCAAAACTGC         TTCCTCGGATGCAGG  52 125
  APE_2144.1 NONE
  APE_2146.1 1359116 .. 1359132 +  -9.4  -2.78813   AATTTAGCCTCTACA              CCGCTC CTGTC GAGCGG              GTTCTTGAAGTGGCC  61 210
  APE_2149.1 1361769 .. 1361779 +  -2.4  -3.75153   GCTTCCATAGAGTCT                 GCGG AGC CCTC                 TTTGCCTTAACAACC  51 243
  APE_2154.1 NONE
   APE_2154b NONE
  APE_2155.1 1366568 .. 1366583 +  -4.6  -3.05844   ACTGTGAGACTGCTT              GGCTAC AAGT GGAGCC               TCTTCCACTCCCCCC  48 34
  APE_2157.1 1368721 .. 1368745 +  -4.9  -2.91383   GAACTCCCTCTTCCC          TTTGTCAGCCA GTG TGGCTGCCCAG          TATGTGAGTAGGCGT  46 371
   APE_2161a NONE
        cstA 1373673 .. 1373686 +  -2.3  -2.75536   GCCTCACAGCAGGCC               CAGGC TTAA GCCTC                CTTTCGACATCGTTT  39 17
    APE_2163 NONE
  APE_2164.1 NONE
    APE_2165 1375515 .. 1375527 +  -4.7  -4.10657   CCCTTGCCTCCTCCT                GCCCC CGC GGCGC                TTTTACGGCGTCTCC  64 488
  APE_2180.1 1383478 .. 1383499 +  -5.1  -2.61735   GAGAGAAGCGTGCAA           GCAGTAGCCC GGC GGGCTAA-GC           GTTATCGCCTCTTAC  47 19
   APE_2180a 1384026 .. 1384043 +  -4.1  -3.59262   GATCTTCATGGGGTA             GTCGCTT GCGA AAGAGAC              TTTCACGCTCTCCGC  51 127
  APE_2184.1 1385447 .. 1385457 +  -2.4  -5.24416   TAGACTTAGTTTTCT                 GGGC TAC GGCC                 TTTTTCTTCTCCTTC  80 256
  APE_2188.1 1389762 .. 1389783 +  -2.9  -3.02144   GAAAAAGGCTATCCC           CGCCTCC-AG CTT CTCGGGGGAG           TGTTGGAGGCCGTCC  42 55
    APE_2190 1390959 .. 1390985 +  -7.4  -3.68024   AGAAACAGAGGGTGA        GGGTAGCGTTT CGCCCT AAACGC-ACCC         TTATGTATTAAACAC  67 26
      rps30e 1395743 .. 1395756 +  -2.4  -3.49568   CTTTCTAGCTATAAG               GGAA ATCCTC TTCC                TCTTCTTCTGGGTAA  46 91
        gatD 1397201 .. 1397215 +  -2.7   -2.8937   CATACTGAGGCTATA               CCGCC ATATA GGAGG               TGTCTAACCGTGTCT  42 4
        gatE 1399189 .. 1399202 +  -9.5  -4.15044   GCTCCCCCAGACATA               GGCCC TCTA GGGCC                TTTCTTAAAGGCCAA  83 61
  APE_2212.1 NONE
    APE_2213 NONE
  APE_2216.1 NONE
    APE_2219 1408539 .. 1408557 +  -3.7  -2.89881   TGGGGTCCCCAGGGA             TCCTGCC TCCAC GGCCGGG             TGTCTCCCCTAGGTG  45 111
  APE_2220.1 1409469 .. 1409482 +  -3.7  -3.53012   TGGACGACCTGGTGG               GGGGC TAAC GCCGC                TTTGCAGAAGGGGGG  52 18
  APE_2221.1 1410656 .. 1410669 +  -3.7  -3.34398   CTACCTCAACAACCG               CCAGG CTAT CCCGG                TATTTGCCGAAGAGG  49 112
  APE_2225.1 1411817 .. 1411841 +  -4.1  -3.12606   ATCACCCCCGGCCAC          GCTATAGCTCC AGT GGAGCCCGAGC          TTAGGTGGTGTGTAA  46 70
    APE_2227 1413158 .. 1413179 +  -2.1  -4.15632   GACAGTACGCCCGAG           CGGCCGGGA GCAG TCCGGGGTG            TTTATGTATGGTGCT  57 427
    APE_2240 NONE
  APE_2242.1 1421743 .. 1421755 + -10.5  -2.58714   GCACCGGCACCAGGA                GGGCC CAG GGCCC                TAGCTTCCTATCGAG  62 168
  APE_2246.1 NONE
  APE_2249.1 1426360 .. 1426372 +  -4.8  -2.87132   GCCGCTGTACGCCTC                GAGG AGGAG CCTC                TGTGTCAGGACGAAG  46 390
        dppA NONE
        dppB NONE
        dppC 1435066 .. 1435079 +  -4.5  -2.69468   AGCAAGGGCTGTCTA               GCACG GGGG TGTGC                TGCTGTATGGCCGTG  44 25
        dppD NONE
        dppF 1437064 .. 1437080 +  -2.9  -3.87815   CTCTATGGAGACAGG              CTGAGCA GGC TGCCTAG              TTTATACCAGTGCAC  54 9
  APE_2265.1 1438081 .. 1438115 + -13.4  -3.05384   CTGGGTTCATCACGG     TCTCCCCGGGGCTGCC TAC GGAAGCCCCTGGGGGC     TTCCCTCGGGAACCC  81 103
   APE_2265a 1438355 .. 1438371 +  -4.4   -3.6761   TCAAGAGCAAATACA              TGCTGC GTAAA GTAGCA              TCTTTATTAGGAACA  56 77
  APE_2267.1 NONE
  APE_2269.1 1441304 .. 1441317 +  -5.3  -4.45083   TCCACTTCCTGGTTC               TTCTC CAGA GAGAA                TTTTCTGGATATCAC  72 378
  APE_2273.1 NONE
    APE_2274 NONE
    APE_2275 1452191 .. 1452211 +  -3.9  -4.84359   ATCTATATAAACTTT            GAGTCAAGC CCG GCTCAACTC            TTTTTCTCAGGGTGG  72 65
  APE_2277.1 1453313 .. 1453326 +  -4.5  -4.19276   GGAAGGCTTGTGTTA               GTCGG TTTT TCGAC                TTTTCAAAATTTTCA  63 196
    APE_2278 1454618 .. 1454638 +  -7.5  -2.89564   GGGGTATTGAGAGGA            GTCTTCTGG TAG CCGGGAGGC            TATGTAGCCTGCCAG  53 451
        fadD 1459635 .. 1459649 +    -5  -3.13403   TGGTGGCCGTGGTGC               TCATGA TGC TCATGG               TGTTCGTGGCCAGGC  47 85
    APE_2288 1462219 .. 1462231 +  -6.2  -2.87132   GCGGGGATTCGAACC                CCGG ACCAC CCGG                TGTCTGCGGGGAGAC  52 276
  APE_2289.1 1463076 .. 1463091 +  -2.5  -5.18371   CCCTTTATCGCTTGT              GC-CGG AGAGA CCGAGC              TTTTCTTTTATCCAC  80 64
        pheS NONE
        pheT NONE
    APE_2308 1477765 .. 1477789 +  -2.7  -2.79133   AGACGCGGGCGGCGG          CTTCACCCTGG TCA CCGGCGTAGAG          TGTGATGAGCCGTTG  41 119
  APE_2310.1 NONE
  APE_2311.1 1479968 .. 1479981 +  -4.5  -3.22475   AGGCTGGCGGCGACC               CTCGG CTCC TCGAG                TGTTATGAGGCTGAG  49 156
  APE_2322.1 NONE
    APE_2323 1486531 .. 1486543 +  -2.6  -3.09015   ACCTGTCGATCCACT                CCCG GCCTG TGGG                TTAAATAGGTGTGCG  42 482
    APE_2325 NONE
        atpP NONE
        proS NONE
      rps26e 1489473 .. 1489487 +  -4.9  -4.11484   TGGCAGTCGGACACA               CGGGT CCACA GCCCG               TTTTCAAGGGTTCGA  61 96
    APE_2330 NONE
  APE_2333.1 1490946 .. 1490956 +  -6.8  -4.65895   ATACCTATCCTGGCA                 GCCA CTA TGGC                 TTTTTACCTCCCGGA  79 379
  APE_2335.1 1492480 .. 1492495 +  -6.8  -4.35044   CAACCCCTGGAAGCC              CACCTC CGGG GGGGTG               TTTATGTTTGCATAC  74 214
    APE_2338 1495246 .. 1495261 +    -9  -4.09685   ATCTGGCATGAAGCC              GAGGCT GTGT AGCCTC               TTTTCCGGAGTCGGC  77 58
        pyrF NONE
        pyrE 1500214 .. 1500271 +  -2.7  -3.53811   CGGGGCCCTGTGAAC GCCCGTCGGGAGTCGCC-C-GCATCGTCG GAGC CGATGGGGCAGTGACGACTCCC--CTGGC TTTGAGGGCCCTCCA  49 77
  APE_2350.1 1501419 .. 1501431 +  -4.7  -2.89793   CCGTCCACATACTTG                GGCGC TAC GCTCC                TCATTATATGCGTGG  46 433
    APE_2354 1503702 .. 1503731 +  -2.2  -3.87815   CCGGCCCCAGGGCAA       TATCTAGTAGGC TCCAGC GGCTGTTAGATA        TTTGTGGGCATAGGG  53 434
  APE_2357.1 NONE
  APE_2359.1 NONE
  APE_2360.1 1505843 .. 1505853 +  -3.2  -4.08692   ACATGGGGGCCTATT                 CTCT GTA GGAG                 TTTTAGGGCGGCTTG  58 279
        infB 1512839 .. 1512852 +  -2.3  -3.09834   TCTGGACGGCCACAC               GCCTT CACC GGGGC                TTGACTGCTGGAGTG  42 471
      rps28e 1514169 .. 1514189 +  -6.8  -3.01712   GCGGCAGGCGCTAGA           GGCCTGCCC CGCC GGGT-GGCC            TATTAAAAACCAGAC  54 27
  APE_2382.1 NONE
    APE_2384 NONE
    APE_2389 NONE
  APE_2390.1 1519467 .. 1519497 +  -2.4  -3.28712   GATCTCAACAAGGCC       GCCGGACCAGGGTT TAC AAGGCTGGTGAGGC       TTGTAGGCGCCGCCC  44 224
  APE_2392.1 NONE
    APE_2397 1523126 .. 1523137 +  -5.8  -2.78816   ATATCACGTCCGGAA                GCCT GCCG AGGC                 TCTCGTAAGCGCTCC  47 174
    APE_2413 1528352 .. 1528366 +  -4.2  -3.83998   TTAAACATGAAAGAT               GAGATG CAT CTTCTC               TTTACTGTCCAATCG  59 117
  APE_2417.1 NONE
        etfB NONE
        etfA 1532797 .. 1532815 +    -8  -3.14564   CTGAGGCCTTGAGGA             CTGCCCCC CAG GGAGGCGG             TTCCTAGAAGCATGG  62 0
    APE_2421 NONE
    APE_2423 1535742 .. 1535752 +  -6.8  -3.61398   TTGCCTCCACATACT                 CGCT GAA AGCG                 TTGTTAGCGAACCCC  60 388
    APE_2425 1537219 .. 1537240 +    -8  -2.54192   AGCGGCTATTATGGT           CACGGTCA GTAGCA TGGCCGTG            CTTGATGCTGCTATG  53 145
  APE_2431.1 NONE
  APE_2433.1 1541645 .. 1541655 +  -6.8  -2.81547   CCTGGAGGTCGCTCG                 CGAG CCC CTCG                 TCCTTCATCTGCAGC  53 476
    APE_2436 1543413 .. 1543423 +  -6.8  -3.27525   AAGACTGTATTTCGG                 GGAG GCT CTCC                 TTCGCTTTCCCGAAC  56 289
        deoC NONE
    APE_2438 NONE
         mvk 1546861 .. 1546877 +  -2.9   -3.1033   GAGGAGGGTGCTAGA              CTCGAGG AGT TCTAGAG              ATTTATGTATCATTT  44 11
  APE_2441.1 NONE
         tfb 1549932 .. 1549944 +  -4.8  -4.08279   GGGAGTGCCTATTGG                GGCT AGGTA AGCC                TTCTTTATAGCATCT  62 188
    APE_2446 1553108 .. 1553132 +  -7.1  -2.54896   CACAATATGGCCGCC          TATCCAGACTG AAG CAGCCAGGATA          TGAATTAGCTGGGCG  50 418
        guaA 1558190 .. 1558204 +  -7.8  -3.33214   CGGCTTAGGTTCCGT               GTGGGG CAT TCCCAC               TATTATCCTTACGGT  61 495
         eno 1561103 .. 1561132 +  -5.1  -2.81547   CAATTGTTAAACCAG       GC-GACACTACAAA ACT TTTATGGTGTCCGC       TCCTTGCTATCCAGA  48 75
   APE_2458a NONE
  APE_2460.1 1561864 .. 1561874 +  -4.6  -3.56092   CTTTAAGGCTCAACA                 CGCG TTC TGCG                 TTTAGGAGGTGGTCA  54 63
        trpS 1563426 .. 1563463 + -18.6  -3.53444   GGCTCTCCGCCCCCA   GGGTGCTCCAAGGCGGT GGGGG GCCGCCTTGGAG-ACCC   TTTCGGAGCCCCTCC 100 437
  APE_2462.1 1564287 .. 1564299 +  -4.8  -3.38604   TAACGGTTTATTTGT                GTGG ACTCG CCAC                TTGATGGTTTTGGTC  52 134
  APE_2463.1 1564985 .. 1564997 +  -6.2  -2.60496   CCCTTCCTATAAAGC                GGCC TAAGT GGCC                CTCTTTGACCACGAC  48 362
  APE_2465.1 1567387 .. 1567406 +  -6.4   -3.3676   GGAGGGTTTAACAGG            GCGGCTAT GGCT GTAGCTGC             TTATAACGTATTCAG  57 135
    APE_2466 1568774 .. 1568784 +  -8.2  -4.53163   CGCCAAGAAGAGTGC                 CGCC TAG GGCG                 TTTTCTGGTATGTCA  78 219
  APE_2468.1 NONE
      rps25e 1571072 .. 1571096 +  -5.5  -3.64716   TACATTTATGGGAGT          GCCAGGACCCC CTG GGGGGTTAGGC          TGTTTTGAGGGGTGG  56 59
  APE_2472.1 1572252 .. 1572278 +  -8.6  -3.02511   GCCTCGCCTCCCTGA         GTAGGCCCTCGA GGA TCCGGGGCCTCC         TCTTGAACACATCGA  60 301
        sixA 1577918 .. 1577945 +  -6.2  -3.69323   CCAGAGGTGACTACA        GGCTTGACCC GGGAGAGG GGGCCAGGCC         TTTGGATAGTGCTGC  62 31
  APE_2485.1 1578500 .. 1578510 +  -6.8  -3.13522   TATAGTGGCGCAAGG                 CTGC CCC GCAG                 TATTGATAGCAGAGT  56 50
  APE_2486.1 NONE
  APE_2489.1 NONE
  APE_2490.1 1580938 .. 1580950 +  -4.1  -3.06315   TGTGAAGACTCCTCC                TTAGC CTC GCTAG                TATTGCCAATGTTGC  45 219
        trxA NONE
       snatA NONE
  APE_2499.1 1585802 .. 1585816 +    -7  -2.85351   ACTTATTTCGGGTGT               CGAGGC TTT GCCCCG               TATCCTCTACAAGGC  53 121
  APE_2500.1 NONE
  APE_2502.1 NONE
        fabG 1591581 .. 1591593 +  -7.7  -3.48981   CTGGCTAAAGCTGCT                TCGAG AGC CTCGA                TTCTCCTCCTGTTTT  62 450
  APE_2507.1 NONE
    APE_2509 1594927 .. 1594943 + -10.1  -2.82505   AGTCCCAGAACTGCA              GCGGCTT GCG GAGCCGC              CTTTAGATGTAGGCT  63 422
  APE_2519.1 1599102 .. 1599115 +  -2.3  -3.48276   TTTTCTGCCTGGCAA               CTGTG TATG CACCG                TTATCTAGCCAGGAG  46 452
        livK NONE
        livH NONE
        livM NONE
        livG NONE
        livF 1604615 .. 1604626 +  -5.8   -3.3514   CCCCGCATTAAAGCT                GCCT ATCT AGGC                 TTGTGAGGTGTCCAT  57 8
        hyuA NONE
        hyuB 1608392 .. 1608405 +  -9.5  -3.83205   CTGGCACTGCTAAAA               CCCGG ATAT CCGGG                TTTAGTCTCGACAAT  78 64
  APE_2537.1 1613273 .. 1613284 +  -5.8  -3.41053   TATCTATTCTCCTTC                CCTC TCAA GAGG                 TTCTGCATAGTTTGG  57 467
  APE_2540.1 NONE
    APE_2541 1616445 .. 1616459 +  -2.8  -2.90496   GTGGCATGGCGAACT               TAATCG ACT CGATCA               TAGTTTCCACGAAAC  42 237
        trpD NONE
        trpE NONE
        trpG 1626033 .. 1626043 +  -5.4  -3.59262   CTAAGCTCCCATATT                 CAAG TGG CTTG                 TTTCCGGGTGTGCCA  56 136
  APE_2571.1 1634804 .. 1634816 +  -3.3  -3.82604   AAGAGGCTTTAGCAG                GGGGA ATT TACCC                TTATTGATTAACTAA  54 71
  APE_2577.1 1638427 .. 1638439 +  -5.5   -2.7186   TCCCGAGTGGTAGCC                GGCTT CTC AGGCC                TCCTTCACCCCGTTT  48 28
    APE_2580 1641355 .. 1641369 +  -4.2  -3.44553   TATGCTTTATCCCGA               TCGTGG GGG TCGCGA               TTGTCCAATTTTTAG  52 126
    APE_2581 1643012 .. 1643030 +  -8.8  -4.30719   TGCTACCGCCTGGTA             CATGGCCG TGC CGTCCATG             TTTATTGTGGCGCCG  81 381
    APE_2585 1645357 .. 1645370 +  -4.5   -2.8805   GCTACTAGGGTGACT               GCAGC CAGT GTTGC                TATGTAGGGGATGGT  46 236
  APE_2601.1 1655478 .. 1655494 +  -4.4  -4.07568   TACTCGATAGTAATG             GGC-AGG TTAA CCTCGCC              TTTTCCGGAAGCAGA  62 495
  APE_2605.1 NONE
    APE_2607 NONE
    APE_2610 NONE
  APE_2612.1 1664503 .. 1664514 +  -4.4  -3.02144   CCCACACGGGCAGGC                TTGC CATA GCAA                 TGTTCCCAACACTCC  47 137
  APE_tRNA47 1666166 .. 1666176 +  -4.6  -3.07232   TGAGTGCTATCTCAG                 CGGC TTT GTCG                 TGTAGTTCTTCTTCT  47 517
 APE_2617e.1 NONE
   APE_2617d 1668733 .. 1668743 -  -2.4  -3.53012   GCTCGCGGGTTCAAA                 CTCG CGT CGGG                 GCTGCTGAATCATTA  47 121
   APE_2617c 1668302 .. 1668321 -    -5  -3.59087   AAGATCACTTGTAAA            GTAGCG GAGGATGA CGCTAC             TATCCAGGAACACTG  56 25
   APE_2617b 1667680 .. 1667710 -  -8.3  -3.61398   GCCGCTCTTGAAGAA       CGTTTCCAGTTGA TGGTT TCCGCTGGAAACG       CTGTTTATAAGTCTC  67 229
   APE_2617a NONE
  APE_2617.1 1666830 .. 1666840 -  -2.4  -3.53012   GGTCCCGGGTTCAAA                 TCCC GGC GGGC                 CCGCCACTTATATAA  47 53
   APE_2616a NONE
    APE_2616 1665716 .. 1665726 -  -6.8  -3.17622   TACGCTTAGAATATA                 TCGG TAA CCGA                 GACCTAAGAAGGGTG  56 292
  APE_2615.1 1663954 .. 1663971 -  -4.9  -3.04398   CCCGCGGCCGAAAAG             CTTGTAGC TGA GCT-CAAG             GAAGCCGTCAAGAGC  47 462
        acsA NONE
        acsA NONE
    APE_2602 1655011 .. 1655021 -  -4.6  -3.25079   CAATATCCTATAAGA                 CCAG CAA CCGG                 GGCGAAAGTAGGCCG  50 442
   APE_2598a 1653808 .. 1653824 -  -2.9  -3.54459   CGAATCCTGTTCAAA              GGCCTAT ACA ACAGCCC              TTCCTGTATAGAGTC  49 41
    APE_2598 1651658 .. 1651685 -  -8.4  -4.77757   TTGGAAAAATCAAAA        CTCTCCCGGCCA CTTT TGAGCAGGAGAG         GCTGCTTAAAGTAGC  87 140
  APE_2595.1 NONE
   APE_2592a 1650424 .. 1650446 -    -4  -3.31799   CATAACTTCTCATAA           CTCCTACGGC ACT ACCACTGGAG           ATCTGAGCCGCGACC  48 42
  APE_2592.1 1648896 .. 1648919 -  -3.1  -4.82901   CGGTTGCGATAAAAA          GAGTGTGAGC GGCTG GC-CGCACTC          GGCCTAAGACTCAAG  70 29
    APE_2588 NONE
  APE_2587.1 NONE
  APE_2586.1 1644990 .. 1645006 - -12.3  -2.70932   TCCTCTTGGCAAGTA              TCTCGCC CTC GGCGAGA              CTCTTTCACACCTAA  70 306
  APE_2583.1 1642380 .. 1642396 -  -2.1  -4.03234   CTTTGCCCAGATAAA              GTACCGG AAG CTGGTGC              AGGCTTCTGTAGCCG  56 302
  APE_2579.1 NONE
    APE_2578 1638030 .. 1638041 -  -4.4  -3.07088   AGCAGTATAGAGATA                GGAT TAGG ATCC                 ACGCCTCCGTGGCTA  47 417
        aspC 1636278 .. 1636296 -  -5.2   -2.7186   AAATCTTCTCAATCA             CCCAGCGA AAC TCTCTAGG             AAGTTTAGTGTCAGT  48 4
    APE_2574 NONE
        nikR 1632364 .. 1632400 - -11.1  -2.59191   GCATAGGGCTAGAAT    TGACAATGCTTCTAACG TTG CATTAGAATCATTATCA    TTGTCTGTCGGGAGA  70 47
  APE_2568.1 NONE
    APE_2567 1630736 .. 1630754 -  -3.1  -2.50935   ATGTCACCCACTAAT             GGCTAGT GTTCA ACTATCC             TGTTAAAGCGGCAAC  40 44
  APE_2565.1 1629755 .. 1629770 -    -6  -2.61106   GACACTTATAAGTCA              CCCTCC TTAA GGGGGG               AAGTCATTAAACTCA  50 354
    APE_2563 NONE
  APE_2556.1 1625933 .. 1625943 -  -4.6  -3.87815   CGTGAGCCCCATAAA                 CGGC TCC ACCG                 CCTGCCAACGTTGAA  59 174
        trpA NONE
        trpB NONE
        trpF NONE
        trpC 1619251 .. 1619269 -  -6.7  -3.52678   AATGTTTTATAAATA             GACGAAC ATATA GTTCGCC             AGTTAAAGAGAACGC  62 116
  APE_2545.1 NONE
  APE_2542.1 1615753 .. 1615771 -  -4.6  -2.62396   TAGTGGTTGACAGGA             TTCTTCTT AGC AGGAAGAA             AGTGTATGGGGGAGG  43 493
    APE_2538 1612822 .. 1612837 -  -4.6  -2.82516   GGGGCTAGCATCAGA              GGGGCC TTAG AACCCC               TTTATCCAACATCTT  45 449
  APE_2535.1 NONE
  APE_2533.1 1608950 .. 1608962 -  -4.7   -4.1899   GCATGGCAGGGAAAA                CGCGG GAG CGGCG                GGGTGGAGGCTCGGC  63 138
        maiA NONE
  APE_2517.1 1597289 .. 1597317 -  -2.5  -2.87931   TTTAGGGTTGATAGA       CACGGCTGAGAT CACCTT ATCT-AGCTGTG        TGAGGATAAGACGTT  41 47
    APE_2516 NONE
    APE_2514 1595395 .. 1595408 -  -3.8  -3.28791   AGGTCCTCTCTAGAA               GGTG TGAAGC CACC                CGTACTTCTTCGCAA  48 6
    APE_2512 1594284 .. 1594294 -  -5.4  -3.31792   CGATGACTCCTACAA                 GGTA CTT TACC                 TCAGGCAGGTCCTCC  51 288
    APE_2505 1590981 .. 1591005 -  -9.3  -2.65815   TCGAGACCGACATGA          CCAGGAGTTTC CTC GACACTCCTGA          GAAGAGGGAGAGGAT  60 237
  APE_2495.1 1583505 .. 1583521 -  -2.9  -3.33009   CAAAACTCCCCATAA              GGTGCTA CAA CATCACC              GGACCCTTCCAGACA  46 112
  APE_2493.1 1581697 .. 1581707 -  -5.4  -3.02461   CAACCCTGCTCAAGA                 GTAG CCC CTAC                 TGTAAACAGTATAGT  49 168
  APE_2491.1 1580426 .. 1580446 -  -6.2  -3.99592   AGGCATGAGGATAAA            CCTAAGAA CATTC TTCCTAGG            CACATCTATACTCCT  66 440
  APE_2481.1 1576189 .. 1576204 -  -6.8  -3.15544   TTGTAGGGTTATTAA              GCCTCGC CTA GCG-GGC              TGCAGCTTCTGAACT  56 6
   APE_2480a 1575934 .. 1575944 -  -4.6  -3.10344   TCGCCATCCAACACA                 CCCC TCT AGGG                 ACCTGTGAAGCCACA  48 20
        ef1B NONE
  APE_2474.1 NONE
   APE_2473a 1572720 .. 1572744 -  -5.5  -3.46602   GGCCCCACATCACAA          CCCCTCTAGGC CGG GACGTGAGGGG          CTCAGCGACGCCACC  54 140
  APE_2473.1 1571892 .. 1571911 -  -2.7  -3.64703   GGTGGTCGACTTAAA            GCTCACC CCTCAC GGCGGGC             TGGATCCGGATGACG  51 73
    APE_2467 1568135 .. 1568148 -  -8.1  -3.59979   GCGGCGTAGTCCAAA               CGGGA GGCC TCCCG                CTAGCGGGGAGGCTC  62 454
  APE_2464.1 1564545 .. 1564555 -  -2.4  -2.80816   GGTTTACGGATGATA                 TGGG CAA CCCT                 GTTGTTATAGCTGTC  39 132
        trkA 1558922 .. 1558932 -  -4.6  -2.66733   GGCCAAGCCACATCA                 CACC TCA GGCG                 CAGATACCACTCCCA  44 86
  APE_2455.1 1558060 .. 1558070 -  -6.8  -3.05384   CTTCCTCCTAGCCAA                 GGGT AGC ACCC                 CACCTCTGTTCATAT  56 7
  APE_2454.1 1557694 .. 1557716 -  -8.4  -2.58677   GACATAACCAGCAAG           CCCCCCTCTA CGA TAGAGTGGGA           GTAGGCTGACGGCGG  58 72
        pepA NONE
    APE_2448 1553405 .. 1553419 -  -2.8   -4.7219   TATATTAACAGAAAA               GAGG GATGGAA CCTC               AATAGGAGGTCAGAT  66 188
    APE_2447 1552716 .. 1552735 -  -3.6  -3.22521   GTCATACCAATCTAA            CGTC-TTCC CCG GGAACAACG            TTGCTAGTACCTTAT  48 29
    APE_2444 1549540 .. 1549565 -  -9.1  -4.25658   AGGCGATCAAAATAA         TAGACCTTTCC CGCA AGAAAGGCCTA          ACCGCAGGTAAGGAT  81 341
   APE_2436a 1542747 .. 1542757 -  -5.4  -3.44325   ATCGCCTAGAAGCAA                 CATG TGG CATG                 GCGTCGGCCTCCCAC  53 403
    APE_2435 1540791 .. 1540801 -  -6.8  -3.38046   TGGCCACCGGAAAGA                 CTCC GAG GGAG                 CTGCTGGATATGCTG  60 363
  APE_2430.1 1538259 .. 1538279 -  -5.4  -3.79113   ACGTGGCTACAAGAA           CGGC-GGCA ATCG TGCCCGCCA            AAGCCAGCAGGTTAT  59 374
        napA 1536690 .. 1536713 -  -3.1  -3.20078   TACTGGACATCAAGA          GGAGGGAGGA CGAAC TCCTCGC-CC          GCATGCCGCCCATGG  45 408
    APE_2424 NONE
  APE_2414.1 1528728 .. 1528750 -    -4  -3.97368   TTTTTAACCTATAAA           CCATGCCTCC TCC GGGGGGATGA           TGCGGGGCTCTAACC  59 53
  APE_tRNA46 1528349 .. 1528361 -  -3.4  -4.04326   TAATTAAACATGAAA                GATG AGATG CATC                TTCTCTTTACTGTCC  56 249
  APE_2411.1 NONE
    APE_2409 NONE
  APE_2408.1 NONE
  APE_2406.1 NONE
  APE_2403.1 1524456 .. 1524470 -  -2.8  -3.45324   GACTCTTAGCAAATA               CCCT GCGTGCT AGGG               GAGGCCCAGCAAAAG  47 20
       thiDN 1522537 .. 1522558 -  -7.9  -3.20322   TTGGAGGAGAAGATA           CTCGTGCCC CCCG AGGCGCGAG            GCCTGAGGGCCGCGG  61 468
  APE_2381.1 NONE
  APE_2380.1 1514149 .. 1514183 -  -2.6  -3.16881   GAGGGAGGCTAGGAA     GCTGAGCGGCAGGC GCTAGAG GCCTGCCCCGCCGG     GTGGCCTATTAAAAA  42 57
      rpl24e NONE
    APE_2379 NONE
         ndk 1512128 .. 1512140 -  -9.1   -3.5399   AGGATAGGGATAGAA                GCCTC GAG GAGGC                CAGGCTGGGGGCTGC  66 296
       rps6e NONE
       aif2g NONE
  APE_2365.1 1507935 .. 1507945 -  -4.6  -3.06361   GACCAAGCAGAGACA                 CCCC AGT GAGG                 GTTGGGTTTGCATTC  48 67
  APE_2362.1 1506397 .. 1506409 -  -2.6  -3.17075   TTCCTCGGAAGCCAA                GGCG GCTTA CACC                CCTCCAGCCCCTGTA  42 42
  APE_2361.1 1505538 .. 1505578 -  -9.6  -3.14132   GCTGGCTTCGAGGAA CCCCGGCCTC-AGGTCCTC GCTA GAGGCCCTGGCCGCCGAGG  GCAGAGCCTAGGTGG  68 4
  APE_2356.1 1503092 .. 1503119 -  -9.8  -3.05596   CAGCGCTTCAGCGAA        GCTGAAGGCGGT GGAC ACCGCCTTCTCC         ATATTCCAGGAGACG  64 196
  APE_2352.1 1500492 .. 1500507 -  -5.4  -3.39327   CGTGGATATGCAGAA              CGACTT CGTG AAGCCG               CAGGGTAAGCTTTTC  53 513
  APE_2347.1 NONE
        lipA NONE
        lipB NONE
        lipB 1495839 .. 1495864 -  -4.5  -3.77806   TTCCACAGTAAAATA         GAGGGGGCACC ACGT GGCTCTCCCCC          AGCTTAAAGCCTAAT  56 159
  APE_2340.1 1495056 .. 1495066 -  -2.4  -3.35224   AGATTGCGGTAAACA                 GGGG TAA CGCC                 GCTAAGAAGCTGGGG  46 263
   APE_2336a 1493717 .. 1493735 -  -7.4   -2.9176   AACCGGACGCAGACA             CCCCCACA GGC TGTAGGAG             GGGTGTGAGGACCCG  57 60
  APE_2336.1 1491901 .. 1491914 -  -5.2  -3.30124   TTGCACCCTCTACAA               CCCG CGGGGC CGGG                GTGGCAGGCTCGCGG  51 399
  APE_2334.1 NONE
   APE_2333a 1490233 .. 1490253 -  -6.7   -4.3739   GAGGCGGCTAGAAAA            CTCGCCGAG AAG CTGGGCGTG            GAGCTCATCGTCCTA  74 513
  APE_tRNA45 1486385 .. 1486395 -  -2.4  -2.56095   GCCACAGCCAAGCCA                 CCCC AGC GGGT                 TGAATCGGATGTCGG  39 70
     rpl35ae 1486068 .. 1486095 -  -3.4  -3.28712   TTTGTGGCTTGAGAA        GGCCTAGGATGCC CGG GGGATGCTAG-CC        ATCCCCACCAGCCTT  46 20
        gltX NONE
        trpB NONE
   APE_2315a 1481186 .. 1481201 - -11.8  -2.53263   TCTAGGGGCAATTCA              CCCCCG CTCC CGGGGG               CATCCTCTAAAGAGA  73 7
    APE_2315 NONE
    APE_2314 1480218 .. 1480237 - -10.7  -3.10715   CTCACCAGGACCCAA            GACGCCC CAGACC GGGCGTC             TGAGCCCCTCGGTAG  71 124
   APE_2311a 1479673 .. 1479683 -  -4.6  -3.05384   CTCTTCGCCATCGAA                 CCCC CCG GGAG                 CATCTCAGACCCCGC  47 192
        hemB NONE
        hemL NONE
        hemC NONE
        hemA NONE
  APE_2295.1 1467744 .. 1467756 -  -6.3  -3.28924   TATGCTCTGCTAGAA                GTTCT AGC AGAAC                CGGGCGTTTACAAGG  55 164
  APE_2292.1 1465912 .. 1465922 -  -2.4   -3.1505   ATTAGGCCTTATCAA                 TCGC TGG GCGG                 GCTGGCTGCGAATCT  42 120
    APE_2291 1464945 .. 1464955 -  -8.2  -3.67775   ATTCTCAGGCAACAA                 CCGG GCA CCGG                 ACTATAGACTAGGTG  70 203
  APE_2290.1 1462740 .. 1462750 -  -5.4  -2.95116   GCACGATGGAAATGA                 TGAG GAC CTCA                 GGAAGAAGGCTATCG  48 300
  APE_tRNA44 1462060 .. 1462072 -  -3.4  -3.90744   CCTCGTTCCAAAGAA                TAGG TTTGT CCTA                TGGTTGTGCTAGGGA  54 147
        thrC NONE
   APE_2284a 1459490 .. 1459502 -  -9.1  -3.49653   AGGAGGTTGAGATAA                GGGAG GAC CTCCC                AAAGAGCGGGGTAGG  66 115
  APE_2283.1 NONE
  APE_2281.1 1456203 .. 1456213 -  -2.4  -3.66356   ATTCTCAACCCTAAA                 CCCC GTG GTGG                 AAAGGGATTTTTGTC  50 136
  APE_2279.1 1454134 .. 1454150 -  -5.7  -3.35934   GGAGATACCTCAGAA              GGGCCGC TGA GAAGCCC              GCTAAGCTGCTCTAT  53 154
  APE_2272.1 1442669 .. 1442680 -  -4.4  -3.61536   AACCCAACTTCTAAA                TGGT TAGT ACCA                 CTTCTTGTGGAGAAC  54 121
  APE_2271.1 1440911 .. 1440922 -  -2.2  -3.63991   CAGTACTTTCAACAA                TAGC ATTT GCCA                 TAGCCCTTCTACTCC  51 101
  APE_2256.1 1430344 .. 1430355 -  -2.2  -3.35867   CTAACTTGCAAGGAA                CTCC TAAC AGAG                 ATTACCCCGGATATC  46 68
  APE_2254.1 NONE
  APE_2253.1 NONE
  APE_2252.1 1426157 .. 1426169 -  -5.5  -3.53012   TCGCCGGCCTCCAAA                CCCTC CCC GAAGG                CAGCCATCCTGGCGA  56 186
        aspC 1424101 .. 1424122 -  -2.9  -2.68202   TCTATAGTAAAAACT           CTTGGGTAG AAGC CTACCCACT            CTTCACCCCCGACGC  40 58
    APE_2247 1423489 .. 1423527 -   -13  -2.91582   TACTCGATCGAGACA   GTATCGTGGAGCACCGGG GGA CCAGGTGCGCCTCGATGC   TGGGCGGGCCTAGCA  78 35
  APE_tRNA43 1422362 .. 1422374 -  -4.1  -3.18788   TGAGGCATAAAACGA                CTTAG CAG CCAAG                AGGTGAACAGGGGGC  48 373
   APE_2242b 1421990 .. 1422002 -  -4.1  -4.57073   GACCCCCGGGAAAAA                CCGTA ATT TACAG                GTTTACTTACCGTTT  66 52
   APE_2242a 1421171 .. 1421181 -  -6.8  -3.34013   GATCCTGTTAAGGAA                 GGGT CTG ACCC                 TCGGGGAACTTGAGA  58 507
         adh 1418085 .. 1418119 -  -4.9  -4.09374   AATACACAAGAAGAA     CTTGCCCCCTCCAAA GGTGG CTTGGCGGAGACAGG     GAGGAGACTGCGAAA  61 313
  APE_2238.1 1416811 .. 1416825 -  -2.8  -2.74799   CATAATTGGCGAAAC               CCCGTT TTT AACAAG               CCTGACACGAACACC  41 131
    APE_2236 1415934 .. 1415955 -  -5.8  -3.03771   TGACACTGGCCAACA           CCCCCGCA CCCCGC TACGGGGA            AAAGCCGTCCTGCTG  53 134
    APE_2235 1415209 .. 1415222 -  -2.3  -2.62983   TGTAGCTGGAGAGCA               GGTCC TCCA GGAGC                CTCCTATCCTCGCCG  39 87
  APE_2229.1 1412933 .. 1412947 -  -4.2  -3.30903   AAAACGCCTCCACAA               CGCC TTGCCTC GGCG               ACAAGATCCACCTCC  50 259
    APE_2223 1410295 .. 1410325 -  -4.5   -3.5393   AGGAGCTTCTCGAAA       GCCACACCCCTGC TCTCC ACCGGGGCGCCGC       CGTGCTGGTGTTCAG  53 240
  APE_2211.1 1402929 .. 1402945 -  -2.2  -3.20349   TTTTCAAACCTAATA              GCCC CCTTAAGCC GGGC              CTTGAGGCTCCTCAG  44 136
  APE_2208.1 NONE
  APE_2207.1 1400121 .. 1400132 -  -4.4  -2.91681   GGGGAAGGCTATAGA                TAGC CAAC GCTA                 CCAGGTGTCCTTAAT  47 23
  APE_2206.1 1399189 .. 1399202 -  -9.5  -2.98823   GCTCCCCCAGACATA               GGCCC TCTA GGGCC                TTTCTTAAAGGCCAA  67 96
  APE_2199.1 NONE
    APE_2196 NONE
    APE_2195 NONE
        aspS NONE
  APE_tRNA42 NONE
  APE_tRNA41 1390907 .. 1390924 -  -2.6  -3.88787   CGAGAGGCTGACAAA             GGGGCT AAGGAG AGCCTC              GGTCAGCATAGTTGT  53 342
  APE_2187.1 1385798 .. 1385808 -  -2.4  -3.21276   CCTCTTCCGACAATA                 GGAG CCG CACC                 CTTAAGGTGGATAGG  44 49
  APE_2185.1 1385276 .. 1385292 -    -5  -3.74693   TGTTATTCTAGGAAA              GCCGGG GCCCT CCAGGC              CCTCACGGGTAAACG  59 91
    APE_2182 1383549 .. 1383563 - -12.8  -3.21912   GCCTTAACCGATGAA               CCGCGG CAT CCGCGG               CGGGCTACAATCAGG  81 410
  APE_2178.1 NONE
  APE_2177.1 1381178 .. 1381189 -  -2.2  -3.14468   GTCGACTATACCCAA                TACC CTGT GGCA                 CCCCCCTAAGCCTAG  42 37
        secE NONE
        nusG 1380506 .. 1380522 -  -3.5  -3.95071   TAAATGCGTAAACAA              GCCGGGG CGT CGCCGGG              TGGCTCGGGCTTACT  57 36
      rpl11p NONE
       rpl1P NONE
       rplP0 NONE
      rpl12p 1377864 .. 1377875 -  -4.4  -2.72144   GCAGGGGGGCTAAAT                GTGT CTCA ACAC                 TAAAACAGGCGAGAC  45 147
        alaS 1374915 .. 1374927 -  -4.8  -3.60296   GAGGTTCAGTCTAAA                GCTC TGAAC GAGC                TTAGGACTAGAGTAT  53 164
    APE_2161 1369670 .. 1369688 -  -3.8  -3.62096   TCCGAGGAGCTGAAA             GGGAAGAC CAT ATCTTCAC             GCACCTTAAAAGTCT  52 261
  APE_2158.1 1368024 .. 1368042 - -10.3  -3.21912   GGTCCAATGTATTAA             GGAGCCT TCGAC AGGCTCC             GGCCCAGCAGCAGGA  68 464
  APE_2156.1 1366576 .. 1366591 -  -4.7  -3.28791   ACTGCTTGGCTACAA              GTGGA GCCTCT TCCAC               TCCCCCCTCACGGCC  50 4
   APE_2154a 1364840 .. 1364854 -  -2.8  -3.64703   TGGTTTGGAGCTAAA               TCGAGA AAA TCTGGA               GAAGCCCTGGCGGGA  52 62
  APE_2153.1 NONE
  APE_2151.1 1361176 .. 1361186 -  -6.8  -3.05384   TGGTGTTGTAGTCAA                 CTGG AGC CCAG                 TCCAGGGTCTGCCAC  54 387
        prpD 1358843 .. 1358856 -  -2.3  -4.31397   AGTTCTACAAAATAA               GGTCC GAAA GGAAC                GGCATCCTAGCGCTC  62 146
        glnA NONE
   APE_2139a 1352509 .. 1352523 -  -2.8  -2.56914   TATTGTATTAACTCA               CACAGA CGG CCTATG               CTAGCTTTCCTTCTC  40 26
  APE_2139.1 NONE
    APE_2138 1351200 .. 1351234 -  -3.6  -3.88137   ATAAGCCTCGATAAA    GCGCCTATAGTGC CTATACCACT GCACC-CAGGCGC     TGAAAAGTACTATAA  57 99
        hemL 1346345 .. 1346363 -  -3.9  -4.82901   TCCTGGCTATAAAAA            CGCCT-TA GTGG TAGAGGCG             GAGCGGCCGGTTCCC  72 59
       gcvPA NONE
       gcvPB 1338618 .. 1338631 -  -3.7  -3.05384   CGCTTGTGGAGGGAA               GCCGG TTTG CAGGC                CTCTGGGCCAGCCCG  46 336
  APE_2119.1 1336615 .. 1336628 -  -3.8  -2.90573   CCACCTAGACCAAAC               GGGT TTTTAC ACCC                TTGTGGGGTCATGGA  45 164
  APE_2118.1 1336041 .. 1336066 -  -8.3  -2.66692   CAGCATTATTAGAAG         GCTTATCAAGG AAGC CCTCGAGAAGC          ACGGCGACGGCTCTC  53 77
    APE_2113 1334091 .. 1334116 - -16.9  -2.94099   GGGTGTCAGGATAGA         GCCTCCCCCCA TACC TGGGGAGAGGC          TGGCCTCAGTCCTAG  88 193
    APE_2109 1331483 .. 1331496 -  -3.9  -2.61264   TGCGGTAGCCATAAT               TTCTA CCAA TAGAA                TAGTCGAAGGTCGTA  43 80
    APE_2108 1329856 .. 1329870 -  -7.1  -4.14472   TCAAGAGGCCGAAAA               GCCTG TGGAG CAGGC               TCCCCCGGGTTGACT  71 426
  APE_2104.1 NONE
    APE_2102 1327165 .. 1327192 -  -4.8  -3.57561   TCGGAACCCTTCAAA        CCCGCCCCCCAAT TCT ATTGGGGG-CTTG        TGGGGTGGAAAATAA  54 64
  APE_2098.1 1324671 .. 1324689 -  -2.3  -2.96216   TGCCAGCATCATACA            GTCCTGCC ATAC GGCCGG-C             GAGCCGTAGGGGTTA  41 88
  APE_2096.1 1323350 .. 1323365 -  -4.6  -3.53012   GGCTGGGCGGGGAAA              CGGGTT GTGC AGCCCG               GGTGGCTAGAAGAGG  54 31
  APE_2094.1 1322587 .. 1322607 -  -5.3  -2.50779   CTAACACCAAGATAG            TCCACTCCC TCA GGTGGTGGA            GAGACCTGGAGTCCA  45 127
  APE_2091.1 NONE
         tmk 1319257 .. 1319269 -  -6.9  -3.60151   CGCCCTAAAGGAGAA                CGGCG TGG CACCG                CTGGCCATACTCATG  60 179
   APE_2086a NONE
    APE_2086 1316513 .. 1316523 -  -6.8  -3.49086   AGATAATCAGGATAA                 GGAG CTC CTCC                 AGCTAGCCCCGAGAC  60 6
  APE_2084.1 1314636 .. 1314650 -    -7  -3.30007   AAGAGGCTGGGAGAA               CTGGCC TTC GGCCTG               AACTACGATATACAG  56 318
    APE_2075 1309012 .. 1309029 -  -7.7  -2.71924   TACTGCCCTGCAAAG             CAGGTTC AGGG GAACCCG              GTGCTCGAGATAGCG  54 317
      rps17E 1305619 .. 1305632 -  -5.2  -3.11604   GACGAAAACTAGATA               GCCC GGCTTT GGGC                TTCCGTCGTTCTCAA  51 379
  APE_2071.1 NONE
    APE_2070 1304192 .. 1304217 -  -5.4  -3.54638   ACAAGCGGGTGTAAA         CAGGGAATGG CCGTTC CCATCCTCTG          GAAACAGGCAGTCAG  55 394
  APE_2066.1 NONE
  APE_2065.1 1300289 .. 1300311 -  -9.8  -3.38046   GCTCCACTCTAAACA           GACCGCCGAG GCA CTCGACAGCC           AGCCGGCTGTGCGGG  72 50
  APE_tRNA40 1295513 .. 1295542 -  -7.2  -2.80464   CGATGAACGCTAAAC       CGGTA-TCACGCC AAACA GGCGTGACCACCA       TTGCAAGGCCATTGA  56 276
  APE_2060.1 1293950 .. 1293967 -  -6.9  -3.17622   GACTGCGATAAGAGA             GCCACCC CGGA GGCTGGC              AGCAGATATGGTGTA  56 356
    APE_2058 1293053 .. 1293063 -  -3.2  -4.13767   CCTGGCAGTCGAAAA                 CGGT TTG ACCA                 TTAGAGGGTTGCTGG  60 93
  APE_2056.1 1292236 .. 1292263 - -10.6   -2.9162   GAATCCGGGAAACGA        TCCCGGGAAGGCA TGT TGCCT-CCGGGGA        TGAGTGAGGCGAACT  70 52
  APE_2055.1 1290825 .. 1290840 -  -4.6  -3.28924   CAGCCCTCTTCATAA              GCTTCG GAGA CGCAGC               CACAGGGATAGTCAG  49 313
  APE_2050.1 1288025 .. 1288043 -  -7.4  -3.05384   TTCTTGGGCACTGAA             TAGCTGTG GGA CACCGCTA             CTCACCCCCCGCAAC  59 23
        metE NONE
        hypE 1285963 .. 1285973 -  -6.8  -3.01712   GCCCTTTTTCCAAGA                 GCCT CTG AGGC                 CCAGTGTTGCAGGTG  53 74
         csd NONE
  APE_tRNA38 1275620 .. 1275653 -  -8.1   -3.1505   AGCAGCTGTGAGGAA     GCTACTAGCCCCCAA GGAG CTGGAGCCTAGGAGC      CCTGGCCCTTTTGGC  62 45
    APE_2020 1272351 .. 1272366 -  -2.4  -2.63747   ACCAAACCGTAGAAC              CCCCCG TTTA CTGGAG               CCTAACAACCTCTCC  39 17
  APE_2018.1 1271102 .. 1271125 -    -6  -3.03443   GGATGAGGAGATACA          TCGACGCCCTT GAG AAGGG-GTCGG          CCAGGGGTAGGGGTG  52 506
  APE_2015.1 1269181 .. 1269203 -  -8.4  -3.15996   TAGCAGCCACTAACA           GGCTAGACCT CAT AGACCCAGCC           GTCCTCAGGCCCGGC  60 437
  APE_2011.1 NONE
        hflX NONE
  APE_2006.1 NONE
  APE_2004.1 NONE
    APE_2002 NONE
  APE_2001.1 NONE
    APE_1999 NONE
    APE_1998 1261361 .. 1261372 -  -7.2  -3.05384   GGGCCGCCTACGGAA                GCCC CTGG GGGC                 TTCCCTCGGGAACCC  59 264
  APE_1996.1 1259964 .. 1259994 -  -8.2  -3.10164   GCACCCAGCAGGGAA       GGCCGGTCTTCC CAGGGGT GGAAGGCCCGCC       GGTAACATATATCGT  57 431
        argF 1258027 .. 1258058 -  -4.3  -2.87211   AGCGTTGTCGAGATA      CCCTCCGACAGCCG TGAGT CGGA-GTCGAGGGG      TCTGCCCGTGCTTAT  44 197
        prf1 1256524 .. 1256537 -  -3.8  -2.78384   CCCGGGGGGACGATA               GGTG GAGGAG CACC                GTAACCCCGTCCACT  43 100
  APE_1985.1 1255316 .. 1255328 -  -7.7  -3.32402   TGGAGAGGAAATACA                GGCTA GCC TAGCC                CTATCTTCCTGCCCC  61 359
  APE_1980.1 NONE
   APE_1979a NONE
  APE_1979.1 NONE
  APE_1977.1 1252679 .. 1252708 -  -4.9  -3.42078   TACACCCTAGGAGAA       GGCCGCC-CGCCTA GTC CAGGCCCAGCAGCC       TCCTGATAAACCTTG  52 6
  APE_1971.1 NONE
    APE_1968 1245826 .. 1245839 -  -2.3  -3.12999   GCACCCGACACGCAA               GCCAG AGGG CCAGC                CGCCATGCCCGCAAA  42 102
  APE_1967.1 1245152 .. 1245175 -    -6   -3.6135   AAATAGAGTGTTAAA          CCAGTCCAAGC CCG GCT-GGACCGA          GGTTTATAGGGCTAG  59 29
    APE_1966 NONE
  APE_1965.1 1243982 .. 1243995 -  -8.1  -3.72788   GCTCAGAATAGAGAA               GGGAG ACCT CTCCC                TAATACTCCGCTACT  66 213
    APE_1961 NONE
         dfp 1238568 .. 1238594 -  -2.2  -2.86618   AATTAACAGCCAAAC         CCCCACACCAAT TGG AGTGTTGTAGAG         CGGAGGCAGGTAAAA  39 76
        nadE 1237357 .. 1237368 -  -5.8  -2.50074   CGCTTCATAACAGAG                CCGA CCTC TCGG                 GATAACAACCAGACC  49 362
    APE_1956 1235255 .. 1235269 -  -7.1  -4.87665   CCCCATCGATAAAAA               TCCGC GGCAG GCGGA               TAAGCCTCGAGGACG  87 193
    APE_1954 1234162 .. 1234172 -  -6.8  -3.16742   CGGAAGGCCTACGAA                 GCTC ATG GAGC                 TGCTGACAGTAGCCG  54 217
  APE_1950.1 NONE
  APE_1949.1 1231390 .. 1231406 -  -2.9  -3.36256   GACAGGCTTAAAAAC              CTATAGG CTA CCCGTAG              AGGCTTCAGCCTAGA  47 53
  APE_1939.1 NONE
  APE_1937.1 1225138 .. 1225148 -  -2.4  -4.19177   ATGGCGTAATAGAAA                 CCAG CTT CAGG                 TCCTCAAACCAGCAC  59 392
  APE_1934.1 NONE
  APE_1932.1 1222730 .. 1222758 - -11.7  -3.52102   AGGTCACGCAGATAA        CCCTGCCAACGGC TAA ACCATTGGTAGGG        GGCTGTGAAGAGGAT  82 103
  APE_1929.1 NONE
  APE_rRNA05 1218522 .. 1218572 - -10.4  -2.62184   GCGGCGCTCACAGCA GGGCC--CCCGGGGCAAGACTGCG GCACG CGCAGTAGCACCCCGGGCTAGCCC CCTCGCGCCCTTCGC  68 167
    APE_1921 NONE
  APE_rRNA03 1214467 .. 1214492 - -12.5   -2.7035   CGCAGCCATACACCA         TGCTGCCCGCC CCCA GGCGAGCAGCC          TACGGCCTCGGGCGA  76 28
    APE_1917 NONE
  APE_1914.1 NONE
  APE_1911.1 NONE
  APE_1909.1 NONE
  APE_1908.1 NONE
    APE_1907 NONE
    APE_1905 NONE
  APE_1902.1 NONE
    APE_1901 NONE
    APE_1899 1205779 .. 1205797 -  -3.1  -3.12999   CGACGCCATACTTAA             TTCACCT CAGGT AGGAGAA             TAGAGTTCTGAAGCC  44 8
    APE_1898 NONE
  APE_1896.1 NONE
  APE_1895.1 1201518 .. 1201533 -  -7.5  -2.87931   TGGAGGCTCCACACA              GCCCC TGCAGG GGGGC               TAGGAGACGTGCAAA  57 110
  APE_1893.1 NONE
    APE_1892 NONE
  APE_1891.1 1198014 .. 1198039 -  -5.4  -3.54951   GATGCTACTAGATAA         GATTGAAGGC GGCATA GCCTTCTACC          AGGCCCAGCGGCGCG  56 305
  APE_tRNA37 1194056 .. 1194076 -  -2.5  -3.77023   ACGAATTAATAAATA            GATAGCC CTCGGCC GGCTAGC            GACAGACATATAGAT  50 86
  APE_1882.1 1191198 .. 1191211 -  -2.3   -3.1372   CACTCGGTATCAATA               GGAGC GGCG GCTCT                AGCCCCCCTGTTTCT  41 370
  APE_1877.1 1188339 .. 1188377 -  -4.4  -3.28791   ACGCCGCGGTCATAA   CGCTCTCCCTCCTGGC GGGGCTG GCCGGAAGGGAGGGTA   GGGTTCTGTCGCAGA  49 519
  APE_1873.1 NONE
  APE_1872.1 NONE
  APE_1871.1 NONE
        hmgA NONE
  APE_1868.1 NONE
        mscS 1181123 .. 1181136 -  -3.8  -3.03243   AGCCACCCTCCAACA               GGCT GTGAGG AGCC                GACCACCGTAGCGGA  46 82
  APE_1866.1 1179968 .. 1179987 -  -4.8  -3.15999   TGTTTATATAGGCAA            CGTGTGGG GCCA CCCGCTCG             AGGACACGTACTGTC  47 326
  APE_tRNA36 NONE
  APE_1864.1 1178198 .. 1178209 -  -4.4  -2.76261   TGGCAACCTTTAAAT                CCTT TTAA AAGG                 GTTATTAGCATGCTT  45 134
         tbp 1177133 .. 1177154 -  -6.5  -2.70532   ATGTTGATAAAGGGA           TCGTGGCTG TTCA CGGCCACAA            GAAGGCAGAGTTTGA  48 423
        rpoH NONE
        rpoB NONE
       rpoA1 NONE
       rpoA2 NONE
      rpl30e NONE
    APE_1850 NONE
      rps12P 1166592 .. 1166604 -  -3.4    -3.615   ACGCGTATATAAAGA                GGAT GAGCG ATCC                AAGGTCAGGCTTCGT  49 518
       rps7p 1165811 .. 1165821 -  -2.4  -3.50746   GGCTTAAAAAGAAAT                 TGGC CCA GCCT                 CACCTCGAGCTCAGA  47 25
         tuf 1164350 .. 1164363 -  -3.7  -4.62069   TGGTGAGCCTAAAAA               CAGGG AAAG CCCGG                GTTTAATCCGGGGTT  68 96
      rps10p 1163649 .. 1163661 -  -5.5  -2.61429   TAAAACCGTTAGAAG                CTGGA GCC CCCAG                GAGCTGGGCGTGGTG  47 151
  APE_tRNA34 1163459 .. 1163470 -  -3.6  -3.05723   GAGGTAAACAACAAT                CCGC CACC ACGG                 GAGGTTGAAACCCTG  46 47
  APE_1838.1 1161728 .. 1161740 - -10.5  -2.63715   AGCCAGGCTAGACGA                CGGCC CCT GGCCG                TCTATCGTGTTCTAT  68 82
  APE_tRNA33 1161406 .. 1161431 -  -5.3  -3.52102   AGCTTAGCTAGAGAA         GCTGCCGAGAG GGGG CACTCGACATC          GCTGGATGCGGCCAG  55 214
    APE_1829 NONE
  APE_1828.1 NONE
  APE_1827.1 NONE
  APE_1825.1 1150708 .. 1150735 -  -4.8  -2.99545   CGCAGACATTATATA        CGGTGTCCCCACG AGC CACAGAGAC-CCG        GTCTCCACCCCGCTA  46 275
        albA 1149061 .. 1149071 -  -6.8   -2.9544   TACCACAACATCATA                 GCGT GGC ACGC                 CTATTACACCCTACC  54 292
    APE_1820 NONE
  APE_1814.1 NONE
  APE_1813.1 1142312 .. 1142328 -  -2.1  -4.75372   AGCATCTAGGAAAAA              CGCCAGC ATC GCTGGTC              TAGCGAGAGAGATCT  70 180
    APE_1808 1139922 .. 1139932 -  -4.6   -4.7889   AGAAAGACTCAAAAA                 CCCC AGT GGAG                 ATTAATAGTGAGAAC  76 257
        valS NONE
    APE_1804 NONE
        pelA 1134445 .. 1134459 -  -3.4  -2.83715   GGCATCAGGAGCATA               CCCGGG GTT CTCAGG               ACTACCACCCTCATA  41 36
  APE_1796.1 1130731 .. 1130741 -  -3.2  -3.65722   AAAACAATCTCGAAA                 CTCC TGG AGAG                 CTTCCTAGACAGGCT  52 372
        ligT NONE
         cca NONE
  APE_1790.1 NONE
        gapN 1123861 .. 1123880 -  -4.4  -5.36441   CGGGCATATAAAAAA            TATTATCA TAAT TGATAACA             CCCACAAAGTTAAAA  84 136
  APE_1785.1 1123046 .. 1123077 -    -5  -3.03441   GAGGAGGGTTTAATA      GTGGAGCGCGCACC GACG GATCCCCGCTTCAC       CCAGATCCCCGCGTG  51 129
  APE_1783.1 1122402 .. 1122419 -  -9.9  -3.64703   CCGCTTGCAGCCAAA             GAGAGTG GAGC CACTCTC              ATAAACGTGAATCCC  72 265
    APE_1777 1119240 .. 1119252 -  -5.5  -3.42257   GCCTAAATACACCAA                CCCGT ACC ACAGG                GGAAAACCAAAGAAC  54 499
  APE_1775.1 1117630 .. 1117641 -  -2.2   -2.5409   ACAACCCTCAACCTA                GCAT ACCT ACGC                 CGAGATAGTGGTGTG  38 70
  APE_1773.1 1116301 .. 1116314 -  -3.8  -3.24021   CCTTCAAACACCTAA               GCCA CCCTCC TGGC                CAGCCTCGTGTAGTA  48 8
    APE_1771 NONE
  APE_1769.1 NONE
  APE_1768.1 NONE
         fni 1112665 .. 1112679 -  -2.8  -3.08224   ATCCCACTTCAAAAC               GCTG ACACCCA CAGC               ATCCCCGGTGCTCTA  44 80
         fgs NONE
    APE_1763 1110978 .. 1110990 -  -3.3  -3.86031   CCAACCAAGGAACAA                CACCC CAG GGACG                GCTACGCAGAGGGGC  54 161
  APE_1761.1 1109900 .. 1109910 -  -6.8  -3.64487   GGAGAGCTTCAAGAA                 GGTG TTC CACC                 AGGATCCTGACAAGC  63 525
        argS 1106546 .. 1106558 -  -3.3  -3.54741   CAGGATCCGTCCAAA                GCGTG CCA CACCC                CAGAGGCCTGAACAC  49 228
  APE_1754.1 NONE
  APE_1753.1 NONE
    APE_1751 1103859 .. 1103870 -  -3.6  -3.17622   GAGCCCGAGAAGATA                GCCG TGGT CAGC                 GTTAGGATCTACGGG  47 516
    APE_1735 1098133 .. 1098148 -  -4.6  -2.55544   CCAGCATCCAACCTA              GAGGCC ACCC GGGCTC               TATAGCTCCATGCCG  44 25
  APE_1734.1 1097437 .. 1097468 -  -3.6  -3.59979   GTGTTCGAGGGCAAA      GTCTCCCTAGCCATG TTT CTCGGCTGGAG-GAC      ACAGCTCAAGGTAGA  51 161
  APE_1723.1 1088704 .. 1088720 -  -6.5  -3.32343   CTTAGAGCGGTAGAA              CCCCCTT GTA AAGGGCG              GGCCATCTTGAAAGC  58 516
        citG 1080703 .. 1080726 -  -6.6   -3.4015   ACAACAAGCTGATAA          GGCCCACGGA GAAG TACGTCGGCC           CAACAGGCCTCAAGT  56 144
    APE_1708 1075593 .. 1075607 -  -6.4  -3.53444   CGATGCTGGGCGAAA               CCGCTA GGC TAGCAG               CCTCCGAGGTGGAGA  58 360
  APE_1701.1 NONE
    APE_1699 NONE
  APE_1698.1 1070002 .. 1070015 -  -8.1  -2.91239   CATAGACTCTAGATA               CGCCT ACAT AGGCG                ACACTATAGAAGTTG  56 493
    APE_1691 1065821 .. 1065837 -  -5.9  -2.54794   CCAACGCCAGAACAC              CTAGCTA ATT TAACTAG              CCTAGAGCAGTATCT  49 22
  APE_1690.1 NONE
    APE_1689 1064527 .. 1064539 -  -6.3  -2.56046   TCAAACCCCAATTCA                TACTC TAC GAGTA                CAGCGCCTACGCCCC  48 206
    APE_1687 NONE
  APE_1686.1 NONE
  APE_1683.1 1060345 .. 1060359 -   -10  -2.89564   TGGTCAGGCTAGAGA               CGAGCA GGC TGCTCG               TCTACACTGCAGCCC  64 314
        pdhA 1057912 .. 1057924 -  -3.3  -3.22653   ACCATGTTCATAACA                GGCAC CGC ACGCC                ACCCCCCTACTCCTT  46 32
        pdhB NONE
        pdhC NONE
        pdhD 1054179 .. 1054219 -  -5.2  -3.09823   GGGGTTAAAATTATA  GTTTAAGTGGGGCAGGGC TTACC GCCTTGCCCCGCCCCTAC  GTAGGATATAGTGAA  51 3
    APE_1668 NONE
    APE_1666 1052927 .. 1052954 -  -3.2  -3.53012   TCGCGCCCTTTGAAA        GGGTTCCCCGCC ACCC GGCTAGCCACCC         GCAGATCATTCTAGG  49 51
        pyrB NONE
        pyrI 1051047 .. 1051070 -    -6  -3.35679   GCCCTTCACCGATAA          CCACCCACACA ACA TTTG-GGGTGG          CCCCGGGTTTAAGTC  57 484
  APE_1660.1 1050229 .. 1050240 -  -3.6  -3.55444   CTGGCAGGCTTCAAA                GGCG AGCC CACC                 AGGGCCCAGGCGGGT  51 379
  APE_1649.1 NONE
  APE_1648.1 NONE
    APE_1647 1043496 .. 1043508 -  -4.7  -3.31144   TCTTGACGTGGAGAA                GCCGC GGG GCGCC                GACTTCGAAGGCCCC  49 439
        speB 1039245 .. 1039262 -  -6.9  -2.84586   CTCAAAACCCAATCA             GGCCAGG TTAT CGTGGCC              AAACTATCCGGGGGT  51 282
    APE_1629 1034021 .. 1034031 -  -6.8  -3.26717   ACCCATAGAAGCTAA                 CCCA GAA TGGG                 TTCCAGTGGAATTCT  58 151
    APE_1627 NONE
    APE_1626 1032840 .. 1032852 -  -3.5  -2.98878   GTATAAAATAAATAT                TTATA ATT TATAA                TATTACGCTAGAGGC  45 66
    APE_1623 1030833 .. 1030850 -  -4.1  -2.52623   CTCCCCCTACAACAG             CTACCCT AACC AAGGCAG              GCCACTCCTTCTAAA  42 247
  APE_1622.1 NONE
        citB 1026424 .. 1026435 -  -7.2  -3.40403   CCCCCGCTACCATAA                GCGG GGCC CCGC                 CGCCATGACAAGGGT  62 499
        apgM 1024778 .. 1024793 -  -3.2  -3.10112   AGCTAACCTACTTAA              CCAGCC AGGA GGCTAA               GAGTTTTTGGAATAA  44 6
    APE_1615 NONE
    APE_1614 NONE
    APE_1611 NONE
  APE_1610.1 NONE
  APE_1609.1 1019128 .. 1019146 -  -3.8  -3.04269   GTGATAGGATAGATA             CTGACG TGGAGTT CGCCAG             GGCCTGGGGTGTTGA  45 408
        pyrG 1016751 .. 1016766 -    -9  -2.64099   CTGCTCGAGTAGAAC              GCTAGC CCTG GCTAGC               CCCTTAGCCTGGCTA  61 21
  APE_1602.1 NONE
  APE_1599.1 1012817 .. 1012850 -  -5.9  -2.70932   CCTTGCGGTCAAGGA     GGAGGCGGAGAGCCTG ATA CTGGATCTG-GCCTCC     AGGATAGCGCCCGAC  47 502
    APE_1588 NONE
   APE_1586b NONE
   APE_1586a 1007255 .. 1007269 -  -2.2  -2.62263   ACTCGGTCTAGACTA               TATAAC CTC ATTATA               TTACCTCATTATATT  39 217
        oppA NONE
    APE_1582 NONE
  APE_1581.1 NONE
    APE_1578 NONE
    APE_1576  997564 ..  997581 -  -5.5  -3.06796   GGCGAGGCCAGTCAA             CCCGG CTCACCCC CCGGG              TCTTGTGGGGTGTTC  51 39
   APE_1574a NONE
  APE_tRNA29  996905 ..  996920 -  -7.6   -3.4878   CCACAGGAGAAGTAA              TGCTAG CACA CTAGCA               TCGCCACAAAACTTC  62 267
    APE_1573  994120 ..  994134 - -11.4  -2.57463   AACGGGGGGTATAAG               CCCCTC TAG GAGGGG               ATAGTCTCGCCTAGC  70 356
        ubiD  992596 ..  992608 -  -4.8  -2.78384   CCGCGTCCCATGATA                GGCT AGTCG AGCC                CGTACTCCCCCCACC  45 15
        ubiA  991548 ..  991567 -  -5.6  -2.95298   GCCATCGACCATACA            GGCCCTCC GCCG GGAGACCC             CTCCGGGCCCTGGCA  49 149
    APE_1569  990882 ..  990908 -  -5.2   -2.5214   ACCATTAGAATATAC         TGTCTGCATAAA TTA TTTATGCCGATA         TGGCGAGCGGGCTAG  47 105
  APE_1568.1  990457 ..  990468 -  -3.6  -2.71712   CCGCGCTGGCCAAAG                CAGG AGCA CCCG                 GTGATAAGTCTTGTA  44 83
  APE_1567.1 NONE
  APE_1564.1 NONE
  APE_1563.1  987550 ..  987574 -  -4.1  -2.80816   GGGTGAGGTATGAGA          GGGCCCCGG ACGTGTG CCGGGCCGC          TGAGGTCCTCGTAGA  43 358
  APE_tRNA28  985921 ..  985931 -  -3.2   -2.7317   ATATATTTCTAACCA                 TCGC TTC ACGA                 TGATGAAGAGGTGTT  41 43
   APE_1558c  985437 ..  985471 -  -5.9  -2.73543   AATCGAGACACAGTA    TATATCATCGCCGTTGG ACA CCGA-GGCGA-GATATA    CGAGAAGTTTCGAAG  47 241
  APE_1555.1 NONE
    APE_1552  979916 ..  979940 -  -4.1   -3.3071   AGAGGAGTAGACGAA          CGCAGCCTGAG GTC CTCCCACCGCG          GCCTCACTCTACGCC  48 34
  APE_1547.1 NONE
    APE_1546  975020 ..  975033 -  -3.8  -3.87815   GTCTATCTTCAGAAA               CGCT GTTATA AGCG                TCGTCCTCTCGATAG  57 419
    APE_1543  972490 ..  972515 -  -4.6  -3.17075   CGTGCTGGAAGCCAA         GTTCCCCGGG GCACCT CCCGTGGAAT          ATATAGTGTTGGCCG  48 51
  APE_1539.1  970955 ..  970973 -  -6.7   -4.2349   GTTTCACAGGCAAAA            CCCGAGGT CATA ACC-CGGG             GTGTAGAGGCAGTAG  69 222
    APE_1534  968181 ..  968209 -  -6.6  -4.11394   AGCCTACCCGGAAAA        TCCCGCGAGCCC CTAGC GAGCCCATGGGA        GCCTGGCCTCTAGAA  69 9
  APE_1530.1  966231 ..  966247 -  -6.5  -3.28712   GCCGCCGGGTGATAA              GGCTTCT TTA AGGAGCC              GGTTCGAACTTCGAG  58 16
  APE_1529.1  965721 ..  965751 - -13.2  -3.33696   GTGGCTTTCAAGCAA       CTACGAGCTGGCGG CGT CGGCCAGCGCGCAG       CTCTACAGCTACGCG  79 136
  APE_1526.1 NONE
    APE_1525  963482 ..  963492 -  -2.4  -4.12901   GAAAAGGGAGAGAAA                 GGGC GTA GGCC                 TGGACTTCTTCCTAG  59 202
  APE_1520.1  960439 ..  960457 -  -6.6  -3.06696   CCGCTGCCCAAGATA             GGCTGGCA CCC CGCTAGCC             ATGGCCAGGGTTCAA  56 107
   APE_1517a  959772 ..  959799 -  -6.9  -4.08706   CCCCCACTACATAAA        GCCCACGGGCT TCCTGG AGCCCCTCGGC         GATAAGAAGTTCGTT  68 334
  APE_1510.1  955376 ..  955390 - -11.4  -3.63805   ACTGTAGACGTTAAA               CCTCCC GAG GGGAGG               GTGATTGAGGTTGCA  78 275
  APE_1501.1 NONE
  APE_1498.1  950447 ..  950476 -  -2.7  -3.28712   CCTTTTCGCTGAGAA       GCTGGGCCATGCC TGAA GCCATGACTTAGC        AGCCCATATCCGAGG  46 108
  APE_1497.1  949305 ..  949322 -  -5.5  -3.88232   GCGGGGATAGAAGAA             GAGTCGC TCCA GCAACCC              GAGTTTTAGCCTTCC  61 185
  APE_1495.1 NONE
    APE_1494  946707 ..  946725 - -10.2  -3.28712   CTGTCCTGGGTATAA             CCAGCCCC CGC GGGGCCGA             GCTGCTTGCTAGGGC  68 516
  APE_1484.1  942209 ..  942220 -  -4.4  -4.62069   CGCGGAGGGCAAAAA                TCCA GGGG TGGA                 GGCTTTTTAGGAGGG  70 54
  APE_tRNA27  941607 ..  941619 -  -4.7  -3.56092   GGAGGACTGGCGAAA                CCCGC TGG GCTGG                GAAACCCTAGCCCTG  53 382
    APE_1477  938514 ..  938557 -    -6  -2.64616   GTGCCAGCTATATTA TGAGCAT-GAGGGCCACCG TTAGGGC CGGGCGCCCTCGATGATCA AGAGTGGCCTAGAAC  50 23
   APE_1473a NONE
  APE_1473.1 NONE
    APE_1472  935061 ..  935076 -  -6.1  -3.65812   GGGGGGTTAAGATAA              GCCAG GAGCAG CTGGC               CCATGAGATAGCGTT  61 196
        lysY NONE
        lysZ NONE
        lysM  928056 ..  928074 -    -6  -2.51173   ATGAACCCTATGAAG             TGTTGCCA GCA TGGTAACA             TGTTTAATGCTCTCT  49 29
    APE_1458 NONE
    APE_1457  925629 ..  925648 -  -6.4  -3.09272   ACATTCCTAAAAGCA            GGAGAACG GAAT CGTTTTCC             ATTTTCCCCAGACCC  53 278
      rpl15e  921978 ..  922015 -  -9.1  -2.59431   TCGCCTGAGAAGCTA   CGACGCCCCCCTCCCCTA AGC TGGGGGAAGGGGA-GTGG   ATGGCTAAGATGAGG  61 68
  APE_1451.1 NONE
        rnp3  920724 ..  920736 -  -3.3  -4.07568   CTCCCCTCCCTAAAA                GGCTC TAT GAGGC                CTATTTAATACTCAA  56 132
        psmA NONE
    APE_1448 NONE
    APE_1447 NONE
    APE_1445 NONE
     rpl37ae NONE
  APE_1443.1 NONE
    APE_1442 NONE
        mscS NONE
   APE_1440a NONE
        pfdB NONE
   APE_1437a NONE
  APE_1437.1  912864 ..  912895 -  -3.7  -3.04398   CCCGCCCTCCAAAAT      CCACGCCCCAGCCA CTTCC TAG-TGGAGCCTGG      CATGTGAAAGGGGGT  46 92
  APE_1436.1 NONE
        fusA NONE
  APE_1430.1  909297 ..  909310 -  -2.3  -2.66316   CCTCCTACTACACTA               CCCGA GTAT CCAGG                CCTCGAGCCGCCTGG  39 9
  APE_1428.1 NONE
    APE_1426 NONE
    APE_1422 NONE
  APE_1421.1 NONE
  APE_1419.1 NONE
  APE_1418.1 NONE
  APE_1417.1 NONE
    APE_1415  902765 ..  902783 -  -3.8  -2.86747   CAGCCACCACAACCA             CCCCCATA GAC TACGAGAG             GAATGCCTCCACCAT  44 17
  APE_1411.1 NONE
  APE_1410.1  899159 ..  899173 -  -3.5  -3.02144   CCAGCCTTGTTAAGA              CGTCCC TAAC GGG-CG               AAGCAAAATTATGCT  45 98
   APE_1409a  898594 ..  898634 -  -3.3   -4.3467   ACGGTCACAGTAAAA GCTGTAGCT-GGGGACCTCG GTGC CGTAGCCCCCAAGCT-C-GC AACCACCACAATTAG  61 369
  APE_1409.1 NONE
    APE_1408  896712 ..  896733 -  -2.9  -4.14627   GTCCGAGAGAAATAA           TACCTGAGG GAAT CCTGAGGGA            ATCAGGAGAGTAATC  59 160
        aroA  892288 ..  892300 -  -9.1   -4.1021   GCGCATAAGGATAAA                GGGTG AAC CACCC                AGCCCTATAAATCCG  78 190
  APE_1388.1 NONE
  APE_1387.1  884072 ..  884085 -  -3.8  -3.80174   ATACTGGGAGAAGAA               CCTC AAGCCG GAGG                AGAACAGCCTCAGGG  57 122
        uppS  882012 ..  882044 -  -2.5  -2.79492   TTTTTAACCTTAAAC      GGGCTGGGAACAGTG ATT CCCTCTTACCTACCC      ATGGGCCTCCTCCGC  39 16
  APE_tRNA25  881521 ..  881555 - -11.5  -2.78463   ACTCCTCGCAGCACA    CTGGGT-AGGAGGCCT AAAC AGGCCCCCCAACCCAA     GTTACAAGCCAGTTA  66 356
  APE_tRNA24  871716 ..  871746 -  -5.4   -2.9587   GTAAAGTCGAAATGA       GACACTTCCTAGAG GCG CTAAAGAAAGTGCC       ACCCAGTCTTACCAA  48 275
        ribH NONE
  APE_1365.1 NONE
  APE_1364.1  867008 ..  867025 -  -7.7  -3.28924   TAGTGGGGGGGATAA             TGGGTGA CCAC CCACCCA              AGGGTAGGACATACC  59 372
  APE_1362.1  865418 ..  865436 -  -5.2  -3.28791   ACTGGCCTCCTATAA             CACAGCGA AGG CCACCGTG             ATACTTCTCTCGAGC  51 397
  APE_1360.1  864234 ..  864244 -  -5.4  -3.36648   CAACATACTCTATAA                 CCAA GTC TTGG                 CCACCCGCCTTGTAG  54 98
  APE_1358.1  863495 ..  863521 -  -5.8  -3.41051   TCATGGGCACCATAA         GTAGCCTGGC GCTGGAT GCCAGGGCAC         TACGATACTCAAGCC  57 34
    APE_1357  862326 ..  862345 -  -8.6  -2.78816   TTAGGCGTTACTATA            GCTGTCCCC AGC GGGGA-AGC            TAGGGCTTCATTCCT  58 487
        moaC  857575 ..  857585 -  -4.6    -4.614   TTGAAGGATATAAAA                 GCCG GCT CGAC                 CGCTCCCCACCCTAT  70 445
        acsA  855168 ..  855185 -  -3.4  -3.57971   ATATTGAGGGTGAAA             CTGG-CG GGCTA CGACCAG             AACGTTGTAATGTTC  49 373
  APE_1336.1  846224 ..  846246 -  -3.3  -3.53224   GAGGGGGCTCTCAAA          CTCCTCGAGC ACCT GCCCG-GGCG           GCTGGGCTAGCGGCC  49 32
  APE_1326.1 NONE
    APE_1324  838841 ..  838871 -  -8.2  -2.80622   ACATACCCGAGGAGA       TGCCGGAGGCCC AGTATAG GGGCTTCGGGCA       GAGGCAGCCTTACAG  54 246
   APE_1322b  837823 ..  837843 -  -4.5  -4.26938   CTGATAAAACAATAA            CCCCCTGGG GTG CACTGAGGG            TGGCTGGCAGGATTC  67 302
    APE_1308 NONE
    APE_1307 NONE
    APE_1305 NONE
  APE_1304.1  826737 ..  826751 -  -4.4  -3.59946   TTTTCAACGAGAGAA               TATAAA TTT TTTATA               AAAGAGAATTTGTAT  54 56
  APE_1303.1  825390 ..  825400 -  -4.6  -2.82015   CTGACATTTAGTAGA                 GGCC CCA AGCC                 CCGGCTAACCTCCCT  45 30
  APE_1301.1  824545 ..  824562 -  -5.5  -3.52874   GTCTAGAGAAGAATA             GGAGCCT ATGG AGCCTCC              CCGCGAAGGCTCTAA  55 78
    APE_1286  814797 ..  814809 -  -9.1  -2.70932   GCCTCTTGTGAATGA                GTCGG AGC CCGAC                GCTGTTGTTGTGAGC  58 310
   APE_1279a NONE
  APE_1279.1  810312 ..  810322 -  -6.8  -3.09581   TAAAGTTTTAATAGA                 GAGG CTT CCTC                 GGCCTGAGGACAGTG  56 7
    APE_1278 NONE
    APE_1277  808855 ..  808873 -  -3.1  -3.15999   CGTTGATAGAGCCAA             CCTAGCA GTAGT TGATAGG             TATGGTAGGCTAAGG  43 472
  APE_1273.1  804483 ..  804500 -  -7.7   -2.8805   ACCACCCGCCACACA             CCCCTAGC CTA GC-AGGGG             GGCTCGGCACAGTAC  57 111
  APE_1272.1 NONE
  APE_1270.1  803522 ..  803541 -  -4.3  -3.64283   GAAACGCGGCAATAA            CACGAGCA CCCCC TGC-CGTG            CCACCAAGGGACTAG  54 101
  APE_1267.1  801808 ..  801829 - -13.7  -3.37487   TGATACTCGTAAACA           GCCTCCCCC TCAC GGGGGAGAC            CAGGGGTCTCGTCAC  83 428
  APE_1245.1  791575 ..  791595 - -13.9  -4.83615   CACCCTCCACAAAAA            CCCGGCCGC CAA GAGGCCGGG            CGTGTATTGTTTTAT 100 150
  APE_1244.1 NONE
   APE_1241a  789438 ..  789460 - -14.8  -3.48465   GAAGAGTAAAACACA           CCAGGGGCTC CGG GGGCCCCTGG           GGGCTGTGTTTACAT  91 56
  APE_1241.1 NONE
        cas1 NONE
        cas2 NONE
        cas4 NONE
  APE_1237.1 NONE
  APE_1236.1 NONE
    APE_1235 NONE
  APE_1234.1 NONE
        cas3 NONE
    APE_1231  777912 ..  777922 -  -8.2  -3.04157   CAATTACGAGAGACA                 CGGC TCA GCCG                 GCTCCTGGCTGTCTC  62 3
    APE_1230 NONE
  APE_1228.1  775743 ..  775757 -  -7.8  -2.82635   AGCCTCAGGATCATA               GCCCTC GCC GAGAGC               CTAGGAGGGGTAGAA  54 291
  APE_1219.1  769869 ..  769887 - -10.2  -2.81471   GAGAAGCCCAGCAGA             CGGCCAGC ACA GCCAGCCG             CTGGAGCATGGCGGC  63 285
 APE_1209c.1 NONE
   APE_1209b  759692 ..  759714 -  -3.2  -3.21395   AGTTCGCCGAGAAGA           CTGTCAGGCC TAG GGCCAGGGAG           ATAGATGTTGGGAAC  45 160
    APE_1209  758604 ..  758616 -  -3.4  -3.08812   TCGCTGTCAACAAAG                CTAG AAGGA CTAG                ATAATTGAGAGAAGC  44 87
    APE_1199  751583 ..  751627 -  -3.4  -3.36878   CCGACCTAGGTATAA CACCACTCTTCGTACGGGAG GCCTA CTACTGTAGGAGGTGCGGTG GCATGGTTAATGAGA  47 214
        cysC  748842 ..  748856 -  -2.9  -3.16071   TCCTATACTAACATA               TTATG CTAAT CATAA               GGTCATGACATTTGG  44 43
  APE_1194.1 NONE
  APE_1193.1 NONE
    APE_1192 NONE
    APE_1191 NONE
  APE_1190.1 NONE
  APE_1189.1 NONE
    APE_1188 NONE
  APE_1187.1 NONE
  APE_1186.1 NONE
    APE_1184 NONE
    APE_1183  736525 ..  736541 -  -3.8  -3.16564   TCGGTATTTCATTAA              TAATTC TCATG GAATTA              TAGTTATGCCTGATT  46 188
    APE_1182  734117 ..  734127 -  -2.6  -4.15044   GGTGCTCCTAAGAAA                 TATT CTT AATA                 TGGCCACTTAGCGTT  57 283
        rfbA NONE
        rfbB NONE
        rfbD NONE
        rfbC  729903 ..  729913 -  -2.6  -3.82665   GATTACATTACTAAA                 TTAA AAA TTAA                 ATTGTATTAACTTTT  53 261
  APE_1173.1  726819 ..  726829 -  -8.2  -2.71144   CAGCCCCCTCAACCA                 GGGG TCA CCCC                 CCACCCTCGGGGGCG  58 19
   APE_1169a  726200 ..  726233 - -12.5  -2.53759   AACAGTGGCAACCCA     CTGGCTACGGCCAAGG TAC CCTCGGCC-TATCCAG     TAACACCAACATACT  75 344
  APE_1169.1 NONE
  APE_1167.1  724304 ..  724318 -  -3.4  -3.51235   CCACAGACACTATAA               CCCGGA GTC CCCGCG               GTCCAAACCAGAGGA  49 62
        ychF  722841 ..  722851 -  -4.6  -4.24786   CTCACAACATACAAA                 CCGG AGG CCAG                 AAGCCCAGCCACACC  63 220
        rnp2  721964 ..  722000 -  -2.2  -3.86822   GAAGGCCTCGATAAA    CCCCTTCATGCCCA AGCCCGTAA CAGGCATGCAGTGG    GCAGGCTTGGCTCCC  53 424
  APE_1119.1  702627 ..  702654 -    -4  -3.78934   GGGCTGTGATAATAA        CGGGCGAGGGCAG GGT CTACCA-CGCCGG        CGACACGGGGGTTAC  54 342
  APE_1114.1  701189 ..  701207 -  -5.2  -3.29511   TGTACTCCTCTAGAA             CCCCCC CGCGTGT AGGGGG             CTATATCGTAGGCTG  53 26
        fbpA  698978 ..  699024 -  -8.8  -3.59882   AACCATAATAATGAA CCACCCCACA-GCCTCCCA CATGTTCGCC TGGGAGGCGTGCAGGCTGG CCAGCAGCGGGGGGG  66 272
        ppnK NONE
    APE_1102  696472 ..  696488 - -10.1  -2.87132   TGGTGGGGGGAGATA              GCAGGAG GGC CTCCCGC              CTCCTACCCGGGCTG  64 397
  APE_1094.1 NONE
        rnp4 NONE
    APE_1091 NONE
      rps19e NONE
   APE_1087b NONE
      rpl39e NONE
      rpl31e NONE
    APE_1085 NONE
        rplX NONE
        pfdA NONE
  APE_1081.1  688672 ..  688684 -  -6.2  -3.17763   GGGAGACTGGAGGAA                GGCC CACCC GGCC                GCGGAGGCCATACTC  54 209
    APE_1078  687301 ..  687311 -  -2.4  -2.71731   TCCACCCTCTAATCA                 CCCC TGA GGCG                 ACGGCGGCGCCGGCT  39 12
    APE_1073  685476 ..  685494 -    -8  -2.90763   GTGATAGCCTACATA             GCAGGGAG GAC CGCCCCGC             CGGAGAAGAGGATGG  56 202
    APE_1064 NONE
    APE_1063  682357 ..  682367 -  -4.6  -2.79641   AATCACAACACATTA                 GCCG CCG CAGC                 CCAAAACCTTGACTA  45 38
  APE_1061.1 NONE
    APE_1059  680020 ..  680062 -  -8.3  -3.14344   GACCCCCCCGACCAA GCCC-CTCGACCCCCGTGAA TGTC TACTCTCGGGTCGAGAGGGC TAAAGACTAGAGGAG  62 172
  APE_1056.1  679092 ..  679117 -  -4.7  -3.29511   CCGACTCGGTGATAA         TGC-TGAGGGAG GGG CTCCTCCACGCA         CAGGGGCCGCCCGAG  49 232
        htpX  673633 ..  673650 -  -4.1  -3.54951   GAGCTCATCATAGAA             CTCCTGGC CCT ACC-GGAG             AAGACCTACCCCCTC  51 314
  APE_1043.1 NONE
  APE_1042.1  671107 ..  671121 -    -7  -3.28924   CACTGCTGGGGATAA               GGGGCC CCA GGCTCC               TGGCAAGCCTCCTGC  56 150
  APE_1035.1 NONE
  APE_1031.1  666307 ..  666352 -  -4.6  -2.78384   GGGCTGTGGAGCACA GCAGCCTCC-T-GGGGCCAGGC TTCA GCCTCCCCCCGATGCTGGCTGC CCTCATGCTGTTCCA  44 512
        leuS NONE
  APE_1014.1 NONE
  APE_1013.1  659615 ..  659625 -  -2.4  -4.52047   TACCACAGGATAAAA                 GTGG CCG CCGC                 AGCACCCAAACCCCC  64 392
  APE_1009.1  658404 ..  658424 -  -7.5  -2.78216   TACGGCGAGTAATGA            GGGCCCC CAAGCCC GGAGCCC            TGAAACCCTAGTTTA  56 33
  APE_1003.1 NONE
  APE_1001.1  654244 ..  654260 -  -7.9  -3.83026   CGCCGCGATACCAAA              CCCAGGA CCC CCCCGGG              GCCACATTGGGGGCT  69 48
  APE_1000.1 NONE
   APE_0996a NONE
  APE_0996.1  651837 ..  651860 - -13.1  -2.70932   CCTCTCCCTCAAGTA          CCCGCCCCC CAGCTC GAGGGCGGG           CGTGCTGCTCCTCCT  73 261
        secY NONE
        adkA  644713 ..  644735 -  -3.3  -2.62578   AAACAACCATAACAG           CCCCTCCCC GCGCT AGGTAGGAG           GTTTAGAGGTTCTTT  40 28
    APE_0980  644189 ..  644199 -  -3.2  -2.63913   GAGGACCTCACACCA                 TCCC CCA GAGA                 TGCCGCAGCAGATTC  40 105
  APE_0979.1 NONE
      rpl34e NONE
         cmk NONE
      rpl14e  641501 ..  641513 -  -3.3  -3.30635   GAAATCCCTCTAGAA                CACTC TCC GGGTG                TGCTGTTGTGCGGCC  46 218
    APE_0975  640364 ..  640382 -  -4.5   -2.7224   CGAGAGCATATACGA             GGCCATG AGGTA CATGGAC             TTCAACGGCGTGGGA  44 236
   APE_0973a  638718 ..  638732 -  -7.8  -3.32268   GAAGCAGGGGTAGAA               GCCTCC TTA GAAGGC               TTGGCTGTAGGCCCC  61 45
  APE_0966.1  632153 ..  632172 -  -6.4  -3.32844   CTGTGGAGGCTAGAA            GAGTCTCC TGGG GGAAACCC             GCTCTCTACACCGCG  56 282
  APE_0964.1 NONE
    APE_0962 NONE
    APE_0960 NONE
  APE_rRNA01 NONE
         ogt NONE
   APE_0957a  626581 ..  626593 -    -2  -4.13767   CTTCTCACTCTAAAA                TTCT ACAGG AGAA                CCCCCCGTGAGGTCC  59 513
    APE_0955  625056 ..  625067 -  -7.2  -3.05384   GGGCCGCCTACGGAA                GCCC CTGG GGGC                 TTCCCTCGGGAACCC  54 288
        gcvH NONE
        sdhA  621081 ..  621107 -  -5.1  -2.91144   CCACCTCTCAAACCA         CCCCCTCTACA CGGCT CACAGAGAGGG         CCCCCTGGAGCCTTG  49 58
        sdhC NONE
        sdhD NONE
        sdhB  619157 ..  619171 -  -3.4  -4.74706   GTTAACAGTGAAAAA               CCCCGG GGA CCGTGA               CACAATATCATGGAG  66 141
  APE_0945.1  617773 ..  617785 -  -3.3  -3.02144   CGACGCCCCCCAACA                GACAG CCA CCGCC                CCCGGCCCTAAAGTC  42 105
  APE_0944.1 NONE
    APE_0943 NONE
    APE_0941  615157 ..  615167 -  -3.2  -3.60098   ACGCTGCAGCCCAAA                 CCAT TAG ACGG                 TCGGGAGGGAATATT  49 39
    APE_0940 NONE
    APE_0939 NONE
  APE_0938.1 NONE
    APE_0935  611826 ..  611836 -  -6.8   -2.8844   CTATAGTACATGAGA                 GGAG GCC CTCC                 GGGCTACCTGGGGGT  54 171
  APE_0932.1 NONE
        dphB  608061 ..  608084 - -13.2    -3.214   CCGAGGAGATGAAGA          GGAGCATGGG CCTG CCCATACTCC           TAGACCAGAAGACGG  79 479
         ocd  599040 ..  599064 -  -4.1  -2.78384   TGGGGCTTCAGCATA          GCCTCCTGCTG CCA CCCCATGAGGC          CGCTGCCAGGGGAGA  44 419
    APE_0902  592786 ..  592808 -  -2.6  -4.05033   TCTACCTCATAGAAA           CCTACACTCC CCC GCAGCACAGG           GGTAAGGGTGTGGCG  56 332
  APE_0896.1  588580 ..  588592 -  -4.1  -3.61398   CCGCGGGTGGAACAA                GGCTT TCA AAACC                CCTTTCACGATACAT  51 249
 APE_0890a.1 NONE
    APE_0890  584206 ..  584216 -  -2.4  -3.53012   GGTCCCGGGTTCAAA                 TCCC GGC GGGC                 CCGCCACATCTTAAC  47 66
        mpgs NONE
  APE_0887.1  581575 ..  581589 -  -5.6  -2.52464   TGGTGTGTGAATGTA               CACTGC ATA GCCGTG               CCTGACTAGCCATTT  47 276
   APE_0885b  580717 ..  580727 -  -2.4  -3.53012   GGTCCGGGGTTCAAA                 TCCC CGC GGGC                 CCACCAAAACTCGAT  47 492
   APE_0880a  577517 ..  577536 -  -8.6  -3.28924   CAGCTCGCTGTATAA            GCTCG-CGA GAC TCGTCGAGC            TGAATATACCCAGCG  63 396
  APE_0874.1  572357 ..  572370 -  -2.3  -4.62336   ATTCTACGGGAAAAA               GCCTG AGAT CAGGG                CTCAGATAGGCGAGG  66 107
  APE_0871.1  569138 ..  569148 -  -6.8  -3.27022   CCCAGGGTATATTAA                 CGAG CTT CTCG                 GGCTAGCAGATCTTA  56 198
    APE_0826  548399 ..  548447 -  -9.7  -3.48593   TAGGCTCGGAGACAA GGTGTTAGAGAAC-GGTTAGCC TGGGTT GCCTGTCCTGTTCTCTAACACC CTGGAGTCTAGGGTC  72 137
    APE_0824  545872 ..  545889 -  -7.7  -3.09273   CTCGCCGAACACATA             CTAGCGC GCAC ACGCTAG              CCCATGTTGCGGGCG  59 84
 APE_0816a.1  542401 ..  542412 -    -3  -4.16943   TTGTACAGGTGAAAA                GAAT AAGA ATTC                 TAAAAAGGAGGACGG  59 151
    APE_0805 NONE
  APE_0803.1  532195 ..  532215 -  -2.4  -3.61517   AGTCGGTTTCAATAA            GCTCCGCC TGCAG GGAGGAGG            AGACTGACTGCCTGC  47 385
  APE_0800.1  530572 ..  530598 -  -6.5  -3.07236   AAATGCATGTTAAGA         GAGATAGCCGG GGGTA CAGGCTAACTC         AACACTCTTCCACAG  56 24
    APE_0797  529180 ..  529191 -  -5.8  -3.87373   GAGACTCTGTATAAA                CAGC TCGG GCTG                 AGCGTCCAGCTTGAC  61 177
  APE_0791.1  522960 ..  522971 -    -3  -3.08314   TCCAATGGTTAAAAG                CTTA ATTT TAAG                 TAGATGAAGTTTCAC  44 37
    APE_0790  521738 ..  521752 -    -5  -3.32844   GGCGTTAGTCTAGAA               GGTACT TTG AATACC               TAGATTAGGAGCTAA  53 247
  APE_0784.1  515992 ..  516007 - -10.4  -3.25823   CTGCTTGGATAGGAA              GCCTGG GAGA CCAGGC               TTTCCTTGAGGCTAT  73 340
    APE_0777  512028 ..  512052 -  -7.2  -3.32521   AGCATAGTGCGAGAA         GCCGCCTCC-CT ACT AGTGGAGGCG-C         ACGAGAGGGAGGAGA  56 273
    APE_0775  510670 ..  510682 -  -2.6   -3.6502   CACGGTCTACCTAAA                CCCG CCGTT CAGG                AGTAGGCTGGTGAAG  51 182
    APE_0766 NONE
  APE_0762.1  502953 ..  502999 -  -8.1  -3.12036   AGAGAGCAGTGAACA CGCCCCACCCCGTCCCATCC AAACACCCAA GGA-GGG-CGGGG-GAGGCG TTGGCGGGGGCAGAA  62 44
    APE_0743  493901 ..  493920 -  -4.2  -4.18197   AGGCGCTATTTAAAA            CGCTTG-GG CGG CCGCTAGCG            CTACGGCAGGCCTTA  63 38
    APE_0741  492845 ..  492863 -  -7.3  -3.05521   AGGATAGCCTCAATA             GCGGCGC GCAGG GCGGCGC             TCGAGAGCCTGGTGG  54 305
  APE_tRNA20  491911 ..  491926 -  -6.1  -3.56821   AGGACAGCGCCGAAA              CCGCA GGGTGG TGCGG               GGGGTGGGATTTGAA  59 18
    APE_0731 NONE
   APE_0730a NONE
    APE_0730  486786 ..  486798 -  -4.7  -3.40191   TTTACAATAGATTAA                GGTGG GTG CCCCC                GCTACATGGCGGCTC  52 403
   APE_0728a  486417 ..  486454 -  -9.1  -4.15006   ATAGCTATTGCAAAA   GCGACTAGTGGGAGCTTC ATG GTAACCCCCTCTAG-CGC   GGTTTATGTGAAGCT  79 29
    APE_0728  485742 ..  485758 -  -2.2   -5.1861   GCTAGCAGGAAAAAA              GAGTAG TGCTG CTTCTC              TTCTCACGGCTACCT  74 35
    APE_0727  484689 ..  484699 -    -4  -4.07885   CATCGGTGTTTAAAA                 TATC AAG GATA                 ATGTCTAGTCTATCA  59 86
  APE_0725.1 NONE
   APE_0722c NONE
   APE_0722b  481679 ..  481692 -  -6.7   -3.4678   ATTCTTATATGATAA               TTCGG TATA CCGAA                TCAAGAAGGGTTGGG  60 311
   APE_0722a  481088 ..  481116 -  -5.9  -4.13654   TTCCGAAATTAGAAA        GGTCGCTGTTGAG TGG CTCAACGGCCACG        AGGATTGCCTGTTTA  68 254
   APE_0720a NONE
    APE_0720 NONE
   APE_0718a NONE
    APE_0718  479297 ..  479326 - -12.1  -2.71731   CCCACCCCCCAATTA       GTCCTGTAGGCCC ATTT GGGCCTATAGGCC        TTTTGGCCATGTTTG  74 112
        menC  474781 ..  474791 -  -6.8  -3.06696   TTCTCTGTTAAGATA                 GCGT ACT ACGC                 TGTAAGGCCCCTCGC  54 352
       top6B  469724 ..  469738 -  -2.8  -2.83822   CTCACCCGACAAGCA               CCCT CACCCCC AGGG               CTACTCGAGCTCCAC  41 26
       top6A  468290 ..  468300 -  -6.8  -3.07192   AACGCTCTGAAGATA                 CTGG GCG CCAG                 GTACGCGCCCGCGGT  54 276
  APE_tRNA19 NONE
    APE_0700  467028 ..  467049 -  -2.9  -3.21099   TGGTGGCATCAGCAA           GCACCAC GCCATATG GTGGAGC            CAGTTCAGGGGGGGC  45 220
    APE_0697 NONE
  APE_0695.1 NONE
    APE_0691  462500 ..  462524 -  -9.9  -3.13403   CCGCGGGGATGAACA          TGGGCGACGGC ATA GCTGTCGCCGA          GCCGGTTCACGGCAC  64 406
    APE_0688  460258 ..  460269 -  -4.4  -3.52073   CCTGGAAGACTAGAA                TGGT TACT ACCA                 GCCGCCGCCTTGTCT  54 39
  APE_0682.1 NONE
  APE_0681.1  456434 ..  456444 -  -2.4  -3.36492   TGCTGAAGCCCATAA                 GGGG CCC CTCC                 ATAATTGATGTGAGC  46 289
  APE_tRNA18  455579 ..  455599 -    -4  -2.94416   CAGCCCGACTATACA            GTAGGC TCCCACACC GCCTAC            CCCGAGGCCCGGCCT  45 77
        panE NONE
        panB  453749 ..  453774 -  -8.3  -3.12999   CCAGGCGACACTGAA         CACCCCC-GG AAGGGAG CCTGGGGGTG         TTGTGAGGAGTTCAG  62 66
  APE_0675.1  453227 ..  453237 -  -4.6  -3.64703   GCTTCGCCACCGAAA                 CCCC GGA GAGG                 ATAAGGGAGGGTATA  56 106
         mdh  448903 ..  448915 -  -4.1  -3.33922   ATGCCGGGGAAAAAC                CCCTA TGG TAGGA                TGGCCTGGTCTGGGA  48 54
        tenA  446490 ..  446500 -  -2.4  -3.40403   TCCTGGCCAGGATAA                 GGGC TGG GCCG                 GATGCGGTGGAGGAG  46 379
APE_rnpRNA01  444933 ..  444950 -  -5.5  -2.69601   TCCACAGGAAACGGA             GGGGTCC TTAT AAACCCC              CGGCAACCACGCCAC  47 395
        rpiA NONE
    APE_0663  443522 ..  443542 -  -6.7  -2.80935   ACCGGAGGTACTACA            GGTACGCCT GGG AGGCGGCCC            GCATACTCAGGAGGG  49 249
   APE_0656a  441758 ..  441777 -  -4.2  -3.04263   AGCCTATGTTCAACA            GGAGGATGC CCG GC-CCCCCC            ACAGCTCCGGAGGGG  48 42
  APE_0656.1  440360 ..  440390 -    -4  -2.73124   CCCTAGCGCTCAAAC       CCGTAATCCC GGAGGCCTAGA GGGTTTACGG       CTGGAGGCTAAAACT  44 20
  APE_0654.1  439244 ..  439254 -  -5.4  -3.57263   AGGTGCAGCTCCAAA                 CCAA GGT TTGG                 GTGAGGGTTAAACCG  56 82
        secG  438791 ..  438803 -  -3.3  -4.62051   AAACACCATATAAAA                GGGGT TAA ACCCG                GAGGTAAATGAATAA  66 160
        ppsA  436097 ..  436118 -  -7.2  -3.01712   GCCGGCCTCGCAATA           GGAGGGGG GAGGGA CCCCCTCA            TAGTCATTTACACCA  53 216
    APE_0641  433544 ..  433565 -  -2.8  -3.05384   TGGCCGGGGAGTGAA           GCTGGGGC GCTTCA GCCCCCGT            ATATCTCCCTAGCCT  44 15
        speH  431960 ..  431993 -  -5.1  -3.67775   AGGCCGACGGAAGAA     CTGGAGGCTAGAGCCC CTC GGGCCCTCGCTACC-G     TGCACGAGGCGACCC  56 306
  APE_0632.1  429749 ..  429763 -  -7.8  -2.87132   GTCCTCCCCTACATA               GCCGCA GCC TACGGC               ATGCTCGCCATAGAG  56 189
  APE_0623.1 NONE
  APE_0621.1  425793 ..  425807 -  -7.8  -2.83715   TGGACTATTAGCATA               GCCAAC CTG GTCGGC               GTGGATGTGGAGGAG  54 85
  APE_0620.1 NONE
  APE_0618.1  418211 ..  418243 -    -2  -3.67775   ACGCCTAGCCAACAA     CCGGGCCACCA ATAATGTGGGCG TGGCG-CCCGG      GGTTGGGGCGGGGGG  50 77
  APE_0614.1  416365 ..  416385 - -16.1  -3.04144   CCCGGAGCCCCAAGA            CCCCCCGGG AAA CCCGGGGGA            AACCCAGGGGAGCCT  93 225
  APE_0609.1  411494 ..  411507 -  -2.4  -3.28537   AGACTGAACTATGAA               TACC GGGCGA GGTA                GGACTGGAAACTTGT  44 147
    APE_0607  407356 ..  407369 -  -3.1  -5.03145   TAACGGTTTAAAAAA               CCCTT GTAT AAAGG                ATTGGCCTGAGCCGC  73 48
  APE_0606.1 NONE
  APE_0605.1 NONE
    APE_0604  405011 ..  405033 -  -5.4  -2.87881   GAACCCGTGGATATA           GCCAGCCTGG TTG CTAGGGCGGC           CTCCGCCTCGCCAGC  48 391
    APE_0601 NONE
    APE_0600 NONE
  APE_tRNA15  402933 ..  402966 -  -7.4  -3.39327   CCCCGAGAGGGATAA     CTATG-AGCCCCCGC GGCAG GCGGGGGCTGCATCT     AGGAGCCCCGGGTAT  62 49
    APE_0598 NONE
  APE_tRNA14  401977 ..  401988 -  -5.8  -4.30719   CTTTCCTAGAAGAAA                GGCT AAAT AGCC                 GGAATAACCGTCTTC  71 423
    APE_0596  400314 ..  400334 -  -6.1   -3.1544   TTATAGGAGATTCAA           GCGTCGCC CAGTAC GGCG-CGC            CTATGGCAGGGTTCC  52 400
  APE_0593.1  397510 ..  397520 -  -3.2  -3.57629   CAACAACCCACATAA                 CACC ATG GATG                 TGAATAGGTCTTTTT  49 242
  APE_0591.1  396170 ..  396180 -  -4.6  -4.14859   AGCAATAAGGAGAAA                 CAGC TAA GCCG                 ACCAAGCTCCAGCGT  63 521
  APE_0586.1 NONE
    APE_0583  391460 ..  391470 -  -2.4  -3.56643   TTTACACCCTTGAAA                 CCGG CCA CTGG                 GAGCCACCTCCACAC  47 42
        aroG NONE
        aroB NONE
        aroD NONE
        aroE NONE
        aroK NONE
        aroA NONE
        aroC NONE
        aroQ NONE
  APE_0562.1  383787 ..  383797 -  -4.6  -2.62642   ATGAGGATTGAGAAG                 CCGC CCC GCGA                 GGGAATGGTTAGGGT  43 50
  APE_0558.1  380788 ..  380812 -  -5.5  -3.26319   AACGGCGGAGACTAA          GGCGCTGGTGG CTG CCGCCAGGTCC          TCAGGCTTGAGGATG  53 207
         upp  373906 ..  373927 -  -6.6  -2.62184   CCTGGCCGCAGACCA           CTCTACGGC TCCAC GCCG-AGAG           CCCTGTCCCCGGCGT  52 6
  APE_0540.1  370743 ..  370759 -  -2.1  -4.64766   GCTAGACGCTAAAAA              GGCGAGG AAG CTTGGCC              TGCACGTGGACACGA  66 140
  APE_tRNA12  368738 ..  368752 -  -4.2  -5.63236   ACTCAAAAATAAAAA               CAGCCA ACG TGGCTT               AGTCCTCTGCAGCGG  91 418
  APE_0536.1  367420 ..  367440 -  -7.6   -2.5751   ACAGCATGAGAATAG           CCATGCTGC ATAG GCAGC-TGG            AAAGCGTGGGATGCG  53 202
  APE_0531.1 NONE
    APE_0528  363038 ..  363056 -    -8  -3.51235   GGAGATACATGAGAA             CCCCTACC TGC GGCCGGGG             AGCAGCGAGGAGCTG  62 267
  APE_0525.1  360826 ..  360849 -  -4.4   -3.5627   ACAGCACTCCTGAAA          CCGCGGAGGC CAAG GCCTACGAGA           GCCTCTTCCCAACCT  54 18
  APE_0519.1  356358 ..  356371 -  -8.1  -3.96327   AGCGTCGAGGACAAA               GCCAG GATC CTGGC                GGCCAGAGCCCTAGG  71 341
        nadM NONE
        rtcA  352287 ..  352301 - -12.8  -2.62263   ACCCTGTGGAGAGGA               GGGCGG CGG CCGCCC               TCAGGCTATTGGACG  71 339
        psmB  350092 ..  350136 -  -9.9  -2.70932   CTTTCCCCCTAAGGA GTAGCTGGGCCCTCGCGGCCT TGG AGGCCGAGAAAGCACACCTAA CCTCGCGCCTATTCA  65 38
         nfi NONE
    APE_0505 NONE
  APE_0503.1  348371 ..  348381 -  -4.6  -2.87564   CTAGGGGGTTACATA                 CCGC TAA ACGG                 AGGGGGTTTGCCACC  47 40
  APE_0493.1  343332 ..  343344 -  -3.3  -3.37975   ACGTAGCAGGCATAA                CAGGC CTG GCATG                GTGGGGAGGTCCTAA  47 502
  APE_0490.1  341761 ..  341773 -  -3.3  -4.85599   CCGAGCCTACAAAAA                GCTGG CGA CTAGC                CCCCCGGAGAGGCCC  73 397
  APE_tRNA11  339988 ..  340008 -  -8.2  -2.63715   AGCCAGGCTAGACGA            CGGCCCCA CAAAC TGGCGCCG            GGGGCGGGATTCGAA  58 18
  APE_tRNA10  339908 ..  339918 -  -6.8  -2.60219   GATAAGCCTTAGAAT                 CAGC TGA GCTG                 GTGGGGCCGCGGGGA  52 24
        loxD  338272 ..  338290 -  -3.8  -2.91264   GGCTGGATGGAGAGA             TTCGGCCT GCT AGGCTAAA             GAACTAGAGAAACGG  45 156
    APE_0482 NONE
  APE_0481.1  334986 ..  335006 -  -6.8  -2.71712   GCCCCGGGTTCAAAT           CCCGGCCGG TCCA CCAGC-GGG            CCTTCCCTTCTATAA  53 35
        moaA NONE
  APE_0477.1  332788 ..  332824 -  -4.2  -3.29829   CATATCCTGGGATAA    CAGGCTACGTCTCCCG TTGGC CGGAAGCCTGGGCCTG    GTTAGGGTTGATGGT  47 424
  APE_0473.1  330236 ..  330254 -  -4.5  -2.64091   AACCAGGCTAGACGA            CGG-GCCC CTTA GGGCTCCA             TATGCTGGATTATTC  44 60
  APE_tRNA08  330093 ..  330107 -  -4.3   -3.2963   ACCACCGCGGTAGAA               GGTAA TCAAG TTACC               CCGCATTGTACCTTT  50 83
 APE_0472b.1 NONE
   APE_0472a NONE
    APE_0472  329068 ..  329095 -  -7.2  -3.66744   CCATAAATAATAACA        TAAACGATATCA ATAC TGATATCACTTA         TCATCAGATATGCAT  67 63
   APE_0471c NONE
   APE_0471b NONE
   APE_0471a  328099 ..  328113 -  -4.2  -3.23869   CACTAGCTTATAAGA               CCCCAC CTC GTAGGA               ACAGAAAGACACGCA  50 259
  APE_0471.1  326829 ..  326840 -  -7.2  -3.05384   GGGCCGCCTACGGAA                GCCC CTGG GGGC                 TTCCCTCGGGAACCC  54 267
  APE_0470.1 NONE
        thiI  322760 ..  322800 -  -9.7  -3.05935   AGACCTGCCAGCCAA  GCTGGCGGAGGCCGT GGGGGGTAGAT ACGGCCTCCTCCACC  CGAGCTGCCCGGGCA  64 513
    APE_0462  320323 ..  320333 -  -5.4  -3.07013   GAGCTCGCTAAGATA                 CTCT GGG AGAG                 GGGATGGGCTGTTAT  49 392
    APE_0459  319057 ..  319097 -  -3.4  -3.41051   GCACCTTCACTACAA GCCCCTTCCTGACGAGGCT CGCCAC AGCC-C-TCCG-AAGGGGC CTCCTATCACCGCTC  47 263
    APE_0454 NONE
  APE_0452.1  316078 ..  316094 -  -2.9  -2.96712   ACTGTCAAGAAGAAC              CTGCTTC TAA AAAGCTG              TTATGACGAGGCGGC  42 168
   APE_0450a  315784 ..  315807 -  -3.6  -4.07885   GACCTTTTTCGAAAA          CCCCGTGTTC ACCC GGTCTCGGGG           TAGTCGTCGGGCACC  59 10
      rpl10e  313347 ..  313368 -  -5.7  -2.66964   TGAGGGAGGAGAGGA           CCCCTTGCA ACAG TGCTTGGGG            AGGCGTGGCTTATGA  50 35
  APE_0447.1 NONE
    APE_0446 NONE
    APE_0445 NONE
  APE_0444.1 NONE
        rpoL NONE
   APE_0442a NONE
         tfs NONE
 APE_0441a.1  308954 ..  308989 - -11.2  -3.40403   CGCCGCGGATTATAA    GGGGGAGGACGCGCATA AAA CATACAC-CCCTCCCCC    TAGCCCCCGGGGTTT  77 25
  APE_0441.1 NONE
        priA NONE
  APE_0437.1 NONE
      rpl44e NONE
      rps27e  306086 ..  306096 -  -8.2   -3.6003   TAAATGAGCCGGAAA                 CCCC CAG GGGG                 TGGGGTTTGGAGGCG  67 50
       aif2a NONE
   APE_0433a  304960 ..  305002 -   -11  -3.28745   GTTTTAAGAACGGAA CGCCCGAAGGCGGGGGGCGC GGG GGGCCCGCCGCGCTAGGGGG GTATGAGGCCTAGCT  76 18
  APE_0428.1  300913 ..  300924 -  -5.8  -2.96395   AGGGAGGAGGAGATA                GAGG CGTG CCTC                 CCCTACCTTGTGGAG  52 344
  APE_0423.1  298107 ..  298118 -  -3.6  -2.64616   GGTGGAGCTAGAGCA                GGCC TAGG AGCC                 TCTCCGAGTTCAATG  43 6
    APE_0419 NONE
 APE_0416b.1 NONE
  APE_tRNA07 NONE
  APE_tRNA06  294783 ..  294796 -  -3.1  -4.51196   GCCAAAGCTATAAAA               GCC-CT TGT AGAGGC               TTTCCCTGTAGTAAC  64 460
  APE_0416.1 NONE
    APE_0415 NONE
  APE_0414.1 NONE
    APE_0413  283975 ..  283985 -  -6.8  -3.54129   GAGAGGTCCTCGAAA                 GGCT CAA AGCC                 TCGGGAGTACGAGTC  60 431
        atpF NONE
        atpE NONE
        atpA NONE
        aptB  278686 ..  278696 -  -5.4  -3.91144   GCTAGAGTGGATAAA                 GCAT TTG ATGC                 GGAGGGCAGGGCTTC  61 40
        atpD  277564 ..  277577 -  -3.7  -2.77947   GAATAACGGTGAAAC               GCCCC CCAC GGGTC                TAAGGGGTATGGTCA  44 464
        pyrH NONE
  APE_0399.1 NONE
        alkK NONE
    APE_0392 NONE
    APE_0390 NONE
    APE_0389 NONE
  APE_0385.1  270176 ..  270196 -  -3.1  -2.57974   ACTACTAGCAATGTA            TACGGGCGG CAG CCTCCCATG            GCTGGCCCTGTTCAT  40 294
   APE_0374a  266942 ..  266960 -  -4.4  -5.07652   CCGTTTAAAATAAAA             GCGGGCTA TCA TGGCCTGC             GGCCTTGGGGGTGGC  80 40
        ileS NONE
    APE_0373  262900 ..  262917 -  -7.7  -3.30441   CACTACTCTCCACAA             GGGA-GCC GTA GGCATCCC             AGACTCTAGCCTCTA  61 158
  APE_0372.1 NONE
    APE_0370 NONE
      rps19p NONE
      rpl22p NONE
       rps3p NONE
      rpl29p NONE
        rnp1 NONE
      rps17p NONE
      rpl14p  256966 ..  256976 -  -2.4  -3.03124   CGGCATCCCGCAACA                 CCCC CCG GGGT                 CATACTATCATGGTA  42 25
      rpl24p NONE
       rps4e NONE
       rpl5p NONE
      rps14P NONE
       rps8p NONE
       rpl6p NONE
      rpl32e NONE
      rpl19e NONE
      rpl18p NONE
       rps5p NONE
      rpl30p NONE
      rpl15p NONE
  APE_0342.1  249393 ..  249410 -  -7.1  -3.17146   CGGGTGGATAATAGA             GTATTAC ACCC GTAATAC              CATCCATAACCGGCT  56 66
  APE_0340.1 NONE
  APE_0339.1  245548 ..  245586 -  -2.8  -3.01712   TCCTCCTGTCGAACA   CCACGGGCTACCCCCTTG CAG CTATGGGGATGGCCGTGC   TATCCGTCCTGTCAG  42 384
  APE_0337.1  243435 ..  243446 -  -3.6  -2.54919   AGCTACGTACAATAT                CACC CGGG GGCG                 TAGAAGGTGTTAAAC  42 62
  APE_0336.1 NONE
    APE_0334  240431 ..  240442 -  -7.2  -3.14344   GAGCCCCGCCATGAA                CCCC TACA GGGG                 CAGATACCAGGGCCA  54 58
  APE_0330.1 NONE
  APE_0329.1  238077 ..  238120 -  -6.6  -3.58343   TGTAGCAGTTGGAAA GGCGGATAAGGCTCTATGCC TCAT GTCCTAGAACCTTTGCCACC GCTAGGTGAGACAGT  62 106
  APE_0326.1 NONE
  APE_tRNA05  235809 ..  235822 -  -3.7  -2.65538   AACAAGCTTATAGTA               GCGGG GGCT CCAGC                GGGGGGCTAATTAAT  43 519
  APE_0322.1  233380 ..  233390 -  -8.2  -2.78816   TCACCCGGTATTATA                 GCCG GGC CGGC                 TGTAAGATAGGGTTT  59 431
  APE_0320.1  232750 ..  232769 -  -7.2  -3.50393   CGTCAGCCGATATAA            TGAG-TGCC CGG GGCATCTCA            TCTTCACCGTAGTAT  64 169
    APE_0319  232085 ..  232103 -  -3.1  -3.11768   CGACATGAGTGAAGA             CTGTAAC TAGCG GTTTCAG             CACTCAAGACCCTCC  44 145
  APE_0317.1  230564 ..  230609 -  -8.9  -3.04144   TCGGGATGCCGAAGA GCAGGCCTCA-CACCCCAGGGG TCT CCCGCGGGCTGCTGAGGCGTGT CCTAGGTCCTGCCGC  65 27
  APE_0316.1  229487 ..  229499 - -10.5  -2.87344   GAGCGCCGTCAGAGA                GGCGG TAG CCGCC                CGCTCCCTAGAGAGG  64 245
  APE_0304.1 NONE
    APE_0303  219481 ..  219504 -  -8.1  -2.58249   GAGACTCTTTACAAT          GAGTAGCGG CAATGT CCGCCACCC           CCTACTCATATCTTA  58 27
  APE_0302.1 NONE
  APE_0301.1 NONE
  APE_0300.1  216305 ..  216315 -    -4  -4.57543   AAGAATTAAAAAGAA                 CTTT TGA AAAG                 GATTAGAAAATGTGA  66 66
  APE_0299.1 NONE
    APE_0297 NONE
   APE_0295a NONE
    APE_0295  213687 ..  213711 -  -5.6  -3.62849   GGCAGGAAACGACAA          GCCCTGGTGA GGAGG CCACCGGAGC          TGGCGGAAGTACCGT  55 421
    APE_0293 NONE
   APE_0291a NONE
    APE_0291 NONE
   APE_0290a  212012 ..  212033 -  -3.9  -3.13109   CACACTATCTAAAAT           CTTAAGCATA GGA TAT-CTTAAG           GTGAGTAGGCACAGT  46 69
  APE_0290.1  211121 ..  211131 -  -6.8  -3.29829   TAGAGGTGGCCAGAA                 CGTG CTT CACG                 TGCACATACCTCGAG  56 303
   APE_0283a  208978 ..  208999 -  -3.7  -3.30124   TGTTAGCTTGGAGAA           GACTG-TGGT AAA ACCATCGGTC           GGCAAGGAGACTCTC  48 373
 APE_0279a.1 NONE
  APE_0279.1  205209 ..  205227 -  -2.4  -4.21194   GCCGAGGACGCAAAA             CAAGAC CGAGCTC GTCTCG             AATGTGATAGTATGG  57 99
   APE_0278a NONE
    APE_0278  204165 ..  204181 -  -2.9   -2.6356   ACCTACACTTAGAAT              GTATCGA TTA CCGAGAC              CATAAGATGAAGCCG  40 124
   APE_0276a NONE
  APE_0276.1  202897 ..  202910 -  -2.4  -2.86164   CCTTGAAGTACCATA               GGTA ACGGAA TACC                AGACTATCTTGTCAT  39 267
 APE_0275b.1  202268 ..  202279 -  -4.4  -2.88839   AGTGGCAAAGAGAAT                CACT CACG AGTG                 CATGTTGCATCCTAT  47 168
   APE_0275a  201879 ..  201889 -  -2.4  -3.01712   TGTTCCCTTGTAATA                 CCCC TCT GGCG                 GAGTCTCTCTAAGGC  41 61
  APE_0275.1  200447 ..  200461 -  -4.4  -3.33492   GGAGTGATTCCATAA               TTAATT TAG AATTAA               TATAGAAGGTTGGGG  50 381
   APE_0274a  199727 ..  199761 -  -6.4  -3.14344   CACTCTCCTGAGTAA     TTCTAGGTCATAGTGG CGG CCTCTATAGCCTAGTA     GAGTCGTCTAAGTTA  53 180
    APE_0274 NONE
   APE_0273a NONE
    APE_0273  198474 ..  198490 -  -9.3  -2.95298   CTCAGCCAGGATAGA              GCGCCGG CCT CCGGAGC              CGGAGGTCCCGGGTT  62 192
        modA NONE
        modB NONE
   APE_0266b NONE
APE_srpRNA01  195327 ..  195346 -  -4.2   -3.6806   AGATAGGGAGCGAAA            GGATGAGA GAGG CCACATCC             AAAGCTAAGGCAGCT  54 450
    APE_0267  192937 ..  192948 -  -4.4  -3.05844   TTGTTTATCGGAAGA                GTGT ATGC ACAC                 CAGGGTTTCCGAAAG  48 101
  APE_tRNA03  192194 ..  192215 -  -5.9  -3.76759   ATTAACGGGAGGAAA           CTTGTTAAC CTGG GTTAACATG            AGGCGTGGTAGCCTA  62 501
  APE_0264.1  190199 ..  190217 -    -3  -3.83262   GAAATCTTATAATAA             TGGCCAAA CCC TTAGGCCC             TAACACTTCCTATAG  54 394
  APE_0263.1  188722 ..  188734 -  -3.3   -3.3095   AGACAGGCCGGACAA                GGTTC TTA GAGCC                CTCGACAAAAGGGAG  46 90
        pyrC NONE
        pyrD NONE
  APE_0258.1 NONE
   APE_0257a NONE
       rpoE1 NONE
       rpoE2 NONE
    APE_0256 NONE
  APE_0255.1  181863 ..  181879 -  -5.1  -2.62389   GAAGTTAGGGAGAAG              CTGCAAG CCC CTTGGAG              TATAGTTCAGGCCGA  43 467
  APE_0248.1  178098 ..  178114 -  -3.5  -3.70902   GGGTTTATAGCTAAA              GCCTGTG TGA CCCTGGC              TGCAAGCCCGCTAAA  54 36
        pdxS NONE
        pdxT  176268 ..  176281 -  -4.5  -3.29511   TGCACTCTGTTAGAA               GCCACC GAA GG-GGC               TCGAACTCGGCGTGA  50 101
    APE_0243  175098 ..  175108 -  -2.4   -3.6279   AAAGCCGTTGAAGAA                 CTCC CAG GGTG                 TTATGGGTCTTGGGA  47 354
    APE_0240  173999 ..  174021 -  -9.1  -2.78935   ATAGTCCCGAGGACA          CCCGG-GGCC TGAA GGCCTCCGGA           GGATCATTTTTGCTT  62 29
    APE_0239  173467 ..  173486 -  -4.4  -3.42256   AGCCACCGAATAATA            TATAG-GGT GCA ACCTCTATA            TTAACTTAAAATTAA  52 99
    APE_0238  172749 ..  172760 -  -5.8  -3.07104   CCACAACGATATATA                GCTC CAAA GAGC                 CTCACCTCAAGCCTA  53 287
  APE_0237.1 NONE
        cobA  171190 ..  171209 -  -2.8  -3.17797   TCCACACACACCCAA            GCCCCTAT ACAC ATAGGAGG             ATTAGAGGCGGCGAT  44 152
        thiL  170156 ..  170183 -  -3.4  -4.56597   CTTCCTCTGTAAAAA        TCTGGA-AGGCTG CGC CAGCCTCTCCACC        CTATTCTAATATTGA  64 88
    APE_0234 NONE
    APE_0233 NONE
    APE_0231 NONE
  APE_0230.1  166049 ..  166065 -  -4.3  -4.18697   AAAACGATGTGAAAA              GGGCCGT GGA ACAGCTC              TTCGGGGTGAAGGTG  62 340
  APE_0222.1 NONE
   APE_0220a  161269 ..  161283 -  -7.1  -3.06796   CTCCACGGCAGCTAA               CCTCC GCCGA GGAGG               ACCTCGTTCACAATG  56 7
    APE_0220 NONE
    APE_0219 NONE
       rpl2p  157672 ..  157683 -  -2.2  -2.53918   CTATCGGACAAAATG                TCGG GCCC CCAA                 GTTCTGAGGGGGTGG  38 108
  APE_0216.1 NONE
  APE_0214.1 NONE
  APE_0213.1  155644 ..  155666 -  -8.5  -3.04263   AGGCGATCTCTAACA          TGGAGAGGGC CGAT GCCCTCTC-A           GCGGTCATACTCTTC  60 145
  APE_0211.1  153621 ..  153632 -  -5.8  -2.62983   GCTATCTCGATACCA                GCCA AGAC TGGC                 ACTCCTACTATCCTG  50 60
  APE_0209.1  152306 ..  152322 -  -3.6  -3.32343   TCGACATCCCCATAA              CGCCAG TTACC CTGGAG              GAAACCTCGCTACAT  47 186
        kptA NONE
  APE_tRNA02  150003 ..  150017 -  -5.8  -3.07132   CATCTAGATAAACTA               TTTAAC AAC GTTAAA               ATCAATAACCAATCT  53 247
  APE_0203.1  148987 ..  149025 -  -3.9  -3.85704   CTATCAAGTATCAAA  CCCCGCCTTCCC-ATCCCT CAT AGGCATAGGGAAAG-GGTG  CTCCCGGCTGTCTCA  57 164
  APE_0201.1  147057 ..  147081 -  -7.2  -3.53444   GCATGCTTGTGGAAA         TACTCGAC-GC CCTT GCAGCCGAGTA          CAGGAGGGAGTGTCC  64 271
         nac  144802 ..  144814 -  -4.7  -3.43961   CGACAACAGGGAGAA                GCCCC ATG GTGGC                TGTGAGGACTAGCCC  51 202
   APE_0193a  143386 ..  143404 -  -7.3  -3.22223   CAACTTCAGGAGCAA             CCCCCGG TACAG CAGGGGG             CGGAGGAGGGATAGA  61 256
  APE_0193.1  142125 ..  142146 - -11.5  -2.97456   ATACAGGAGTATAGA           GGACCTCGC TACA GCGAGGGCC            GAGGATCTCATGCGC  68 149
  APE_0184.1  135795 ..  135813 -    -6  -2.61264   GGCTGTAGCCATAAG             CATGCTTA GCA TAAGCCTG             GGTGCGGTGGTATCC  48 168
    APE_0181  133138 ..  133151 -  -2.3  -3.97368   TGCTTAAGCTATAAA               GGCTT CACG AGGCC                TAGCTAACCCTGGTG  55 265
        mobA NONE
        mobB NONE
        moeA  130171 ..  130185 -  -2.8  -4.11216   TGGCCAGGGGTAAAA               GGAC TAAGGAG GTCC               TCAAGAGATTTTACG  60 480
         pgk NONE
  APE_0171.1 NONE
         agt  126005 ..  126018 -  -4.5  -2.93348   TGGACGAACAGCAGA               CCCTC TTCC AAGGG                AGTCTCTACACCTAT  47 87
  APE_0168.1  125492 ..  125502 -  -6.8  -2.72344   GTTGACCCGGAAGTA                 GCCT CGG AGGC                 CCTCGCCCGAGCCGG  51 155
  APE_tRNA01 NONE
  APE_0166.1  124146 ..  124157 -  -7.2  -3.31248   CAATACTGTGGAGAA                CGGG CAAA CCCG                 CTCTCTCGTCGACCG  61 280
  APE_0163.1  122713 ..  122737 -  -4.2  -3.14132   CCGGGGCCCGATGAA          GAGTACGCCA TCGCC CGACGGACTC          TTTCCAGCCGTGGGG  48 112
    APE_0162  121502 ..  121515 -  -2.3  -3.08522   GAGCTACTCGAAAAG               GCCTA CAAA TGGGC                TAGGAGATATGCGCC  41 337
    APE_0159  119254 ..  119270 -  -5.7  -2.76087   AAGACACCTTTAAAT              CCCGAGG GTA CCCAGGG              CGAAGGCTATCAGGC  51 3
  APE_0158.1 NONE
    APE_0157  117684 ..  117696 -  -6.9  -3.06133   CAACGTGTGATCGAA                CCCCC AGG AGGGG                ATTGGTTCCTACCGC  56 34
  APE_0156.1 NONE
  APE_0155.1  115862 ..  115872 -  -2.4  -3.45945   GCCATCGACAATCAA                 CCCC CTC GGCG                 ATAGGAAACTGTTCT  46 81
    APE_0154  114438 ..  114449 -    -3  -2.78197   CGCCATATATACAAG                TTCT ACCT AGAA                 GGCTAATAAGGGGGT  41 69
  APE_0153.1  113324 ..  113336 -  -3.3  -4.19472   TAATACAGGCTAAAA                TGGCC TCA GGCTA                CGAGTAACTCACACG  59 300
  APE_0148.1 NONE
  APE_0146.1  108387 ..  108402 -    -9  -2.76225   AAGGAAGCTCAACGA              CTCCCT TGAG AGGGAG               AAGAGTGACGCAAAG  58 467
  APE_0143.1  106868 ..  106878 -  -5.4  -2.80816   CGCCTAGCTAGCATA                 TCCT CCT AGGA                 GTTTAGAGTTTTGCG  48 198
  APE_0131.1   97853 ..   97864 -  -5.8  -3.31263   ACTCTACTTCTAGAA                GCCT TGAC AGGC                 ATACCGGCCTCCGAA  51 262
  APE_0117.1   87306 ..   87317 -  -5.8  -3.65812   CCCCCTGCAATATAA                GGCT CCCG AGCC                 TTCATCCTACATACT  62 243
         fen   84987 ..   85015 -  -5.9  -3.15078   GAGAGCTTATTAATA        TGGCCTGGATTGC TGG GCTATCCGAACCA        CATGTCGAGCCTCGA  53 14
      rpl40e   84680 ..   84705 -  -2.5  -3.85184   CCTAAAAGAGGTAAA         CTCCCTGCTCAG ACT CT-AGGAGGGGG         TTTTACGCTGGATGC  53 102
    APE_0113 NONE
    APE_0110 NONE
  APE_0109.1 NONE
        herA NONE
  APE_0106.1   76893 ..   76919 -  -3.6  -3.83026   CCGGGCTACACGAAA         GGGCTACAGCTC CTC AAGATAGAGCCC         GGCTTCTACATGGTA  57 470
  APE_0104.1   75252 ..   75263 -  -5.8   -2.8844   TGACATGATACCAGA                CACC CCCA GGTG                 TTGTCGCGCCGGAGA  52 49
  APE_0103.1   74316 ..   74331 -  -5.4  -3.20387   GGAAAAGAGGGAAGA              CGCCAA ACAT TTGACG               GAGGTCCTAGATAGG  51 469
    APE_0099 NONE
  APE_0097.1   68184 ..   68197 -  -8.1  -3.10091   AGTCCGAAAACTACA               CAGCC TACA GGCTG                AACCTCGACATCGGG  57 308
  APE_0093.1   66516 ..   66529 -  -2.3  -4.77036   CTTCAGCACCAAAAA               GGGTC TACG GACTC                TAAGCCGGAAACATT  68 75
  APE_0092.1   65094 ..   65105 -  -5.8  -3.83006   ATATCTAACTAACAA                CTGG TACA CCAG                 GCTTCAAAACTATCT  61 291
  APE_0087.1   60419 ..   60430 -  -4.4  -3.03124   TCTCAGCCTTTAACA                GCTT CAAC AAGC                 TTTTTGGATAGAATG  48 1
  APE_0085.1   58582 ..   58594 -  -3.4    -3.797   GGAAAGGAATAAAGA                GGAT GTCCT ATCC                CGTTTCACGCTACTA  52 38
  APE_0084.1 NONE
  APE_0082.1   56527 ..   56538 -  -4.4  -2.62184   TCCTCTCGGACATGA                TCGA CAAG TCGA                 GTTCGCTTCTAGATA  44 62
  APE_0080.1   54005 ..   54020 -  -3.2  -3.53091   AGTCCGCTCCCCAAA              GGCATG AGCA CATCCC               CGATACTTGTTAAGG  49 517
   APE_0077a   53783 ..   53793 -  -4.6  -3.66654   CAGCTGAAGGGCAAA                 GGCC ACT AGCC                 ACGCCTTCTATTCTT  56 20
  APE_0076.1   51964 ..   51982 - -10.3  -3.31144   CCTTTAGCGGGAGAA             TCCCCAG GGAGG CTGGGGA             GGAGTCTAAACAAAG  68 202
  APE_0071.1   47685 ..   47705 -  -8.3  -2.75022   CCGGTCATATATAAG            CACCCCTTT GGG AAACGGGTG            GTAGCTCCTTTTAAA  59 260
  APE_0070.1   47029 ..   47049 -  -3.4  -3.36505   AGATGGGATCCAGAA           TAGCT-CAA TTAG TTGTAGCTA            GGGTGGAAGGACCTC  47 111
  APE_0056.1 NONE
    APE_0055   33667 ..   33685 -  -3.8   -3.1355   TTCATTTACACGGAA             GCGTGTAT CAG ATCCACAC             AATCAACGTTATAAT  46 14
  APE_0054.1   32965 ..   32979 -  -7.2    -3.186   CAATACAGGAAGACA               CAATGT TAC ACATTG               AGTGTTAACACATTT  61 104
  APE_0053.1   31923 ..   31944 -  -7.9  -3.14344   TATGGTCCTCAGCAA           GGCCGAAGG CACA CCTCCGGAC            CATTGTAAATGTTTT  59 98
  APE_0052.1   30872 ..   30916 - -14.3  -2.89602   TTCTTCATAGCAAAG TATCAGCCTCTAGGCCCCGAA CTC CTCGAGGCCAAGTCGCTGATA AGAACCTCCTATGAT  82 516
  APE_0025.1 NONE
  APE_0024.1   15931 ..   15942 -    -3  -3.07455   CCACCACAAACTACA                TTCA AAAA TGAA                 ACTTGAAGAAAACTC  44 104
  APE_0023.1   15364 ..   15375 -  -5.8  -2.78384   CTCGGGCCCACTATA                GTGG GTTT CCAC                 GCCGGCTTATACCCT  51 41
  APE_0020.1   13914 ..   13945 -  -2.1  -3.21218   ACCCCCCACCAGTAA      CCCCCCGGTCC TCACCAGCCT GGCCAGGAGGG       CTTGAAGATCTCCAG  44 5
  APE_0017.1   12316 ..   12332 -  -2.2  -3.96932   ATATACAGCTATAAA              CTATCC GGAGA GGAGAG              CCGTGTTTTCCTATA  55 80
  APE_0010.1 NONE
  APE_0009.1    5631 ..    5648 -  -4.1  -3.78329   CTCGATGAACTCAAA             CGATTGT GACA ACACTCG              CAGCATCACGAGGAC  54 151
    APE_0004    1219 ..    1230 -  -2.2  -3.05268   CAAGTACGTGTAATA                CTGC CAAT GCAA                 GCACACCAGTCCTTG   0 55
