locus-tag class description LIN98_RS00005 PF00308 Bacterial dnaA protein LIN98_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix LIN98_RS00005 PF11638 DnaA N-terminal domain LIN98_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LIN98_RS00010 PF02767 DNA polymerase III beta subunit, central domain LIN98_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LIN98_RS00015 PF02463 RecF/RecN/SMC N terminal domain LIN98_RS00020 PF13649 Methyltransferase domain LIN98_RS00025 PF00080 Copper/zinc superoxide dismutase (SODC) LIN98_RS00035 PF13276 HTH-like domain LIN98_RS00035 PF00665 Integrase core domain LIN98_RS00035 PF13333 Integrase core domain LIN98_RS00045 PF03949 Malic enzyme, NAD binding domain LIN98_RS00045 PF00390 Malic enzyme, N-terminal domain LIN98_RS00055 PF03918 Cytochrome C biogenesis protein LIN98_RS00060 PF08534 Redoxin LIN98_RS00065 PF01578 Cytochrome C assembly protein LIN98_RS00065 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LIN98_RS00070 PF03916 Polysulphide reductase, NrfD LIN98_RS00075 PF13247 4Fe-4S dicluster domain LIN98_RS00085 PF02335 Cytochrome c552 LIN98_RS00100 PF03918 Cytochrome C biogenesis protein LIN98_RS00105 PF03918 Cytochrome C biogenesis protein LIN98_RS00110 PF08534 Redoxin LIN98_RS00115 PF01578 Cytochrome C assembly protein LIN98_RS00115 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LIN98_RS00120 PF03100 CcmE LIN98_RS00125 PF04995 Heme exporter protein D (CcmD) LIN98_RS00130 PF01578 Cytochrome C assembly protein LIN98_RS00135 PF03379 CcmB protein LIN98_RS00140 PF00005 ABC transporter LIN98_RS00150 PF01479 S4 domain LIN98_RS00150 PF00849 RNA pseudouridylate synthase LIN98_RS00155 PF00390 Malic enzyme, N-terminal domain LIN98_RS00155 PF01515 Phosphate acetyl/butaryl transferase LIN98_RS00155 PF03949 Malic enzyme, NAD binding domain LIN98_RS00160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LIN98_RS00160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LIN98_RS00170 PF04228 Putative neutral zinc metallopeptidase LIN98_RS00175 PF01476 LysM domain LIN98_RS00180 PF02660 Glycerol-3-phosphate acyltransferase LIN98_RS00185 PF02152 Dihydroneopterin aldolase LIN98_RS00190 PF01464 Transglycosylase SLT domain LIN98_RS00190 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIN98_RS00200 PF02600 Disulfide bond formation protein DsbB LIN98_RS00205 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LIN98_RS00210 PF07840 FadR C-terminal domain LIN98_RS00210 PF00392 Bacterial regulatory proteins, gntR family LIN98_RS00215 PF00155 Aminotransferase class I and II LIN98_RS00220 PF00425 chorismate binding enzyme LIN98_RS00225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIN98_RS00225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIN98_RS00225 PF16582 Middle domain of thiamine pyrophosphate LIN98_RS00230 PF00561 alpha/beta hydrolase fold LIN98_RS00235 PF00312 Ribosomal protein S15 LIN98_RS00240 PF00438 S-adenosylmethionine synthetase, N-terminal domain LIN98_RS00240 PF02773 S-adenosylmethionine synthetase, C-terminal domain LIN98_RS00240 PF02772 S-adenosylmethionine synthetase, central domain LIN98_RS00245 PF17283 SprT-like zinc ribbon domain LIN98_RS00245 PF10263 SprT-like family LIN98_RS00250 PF03222 Tryptophan/tyrosine permease family LIN98_RS00255 PF03313 Serine dehydratase alpha chain LIN98_RS00255 PF03315 Serine dehydratase beta chain LIN98_RS00260 PF17763 Glutaminase/Asparaginase C-terminal domain LIN98_RS00260 PF00710 Asparaginase, N-terminal LIN98_RS00265 PF04055 Radical SAM superfamily LIN98_RS00275 PF13464 Domain of unknown function (DUF4115) LIN98_RS00280 PF04551 GcpE protein LIN98_RS00285 PF13393 Histidyl-tRNA synthetase LIN98_RS00285 PF03129 Anticodon binding domain LIN98_RS00290 PF09976 Tetratricopeptide repeat-like domain LIN98_RS00295 PF04191 Phospholipid methyltransferase LIN98_RS00300 PF00308 Bacterial dnaA protein LIN98_RS00305 PF00860 Permease family LIN98_RS00315 PF13145 PPIC-type PPIASE domain LIN98_RS00320 PF18419 ATP-grasp-like domain LIN98_RS00320 PF04262 Glutamate-cysteine ligase LIN98_RS00320 PF02655 ATP-grasp domain LIN98_RS00325 PF00884 Sulfatase LIN98_RS00330 PF00574 Clp protease LIN98_RS00335 PF07724 AAA domain (Cdc48 subfamily) LIN98_RS00335 PF06689 ClpX C4-type zinc finger LIN98_RS00335 PF10431 C-terminal, D2-small domain, of ClpB protein LIN98_RS00350 PF05675 Protein of unknown function (DUF817) LIN98_RS00355 PF00403 Heavy-metal-associated domain LIN98_RS00360 PF00403 Heavy-metal-associated domain LIN98_RS00365 PF00376 MerR family regulatory protein LIN98_RS00365 PF09278 MerR, DNA binding LIN98_RS00385 PF01980 tRNA-methyltransferase O LIN98_RS00385 PF18389 TrmO C-terminal domain LIN98_RS00390 PF01040 UbiA prenyltransferase family LIN98_RS00395 PF03737 Aldolase/RraA LIN98_RS00400 PF00939 Sodium:sulfate symporter transmembrane region LIN98_RS00405 PF04751 Protein of unknown function (DUF615) LIN98_RS00410 PF01523 Putative modulator of DNA gyrase LIN98_RS00415 PF00156 Phosphoribosyl transferase domain LIN98_RS00420 PF02595 Glycerate kinase family LIN98_RS00425 PF02447 GntP family permease LIN98_RS00430 PF13556 PucR C-terminal helix-turn-helix domain LIN98_RS00430 PF17853 GGDEF-like domain LIN98_RS00430 PF05651 Putative sugar diacid recognition LIN98_RS00440 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LIN98_RS00440 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LIN98_RS00445 PF00271 Helicase conserved C-terminal domain LIN98_RS00445 PF03880 DbpA RNA binding domain LIN98_RS00445 PF00270 DEAD/DEAH box helicase LIN98_RS00455 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LIN98_RS00455 PF01138 3' exoribonuclease family, domain 1 LIN98_RS00455 PF03725 3' exoribonuclease family, domain 2 LIN98_RS00455 PF00575 S1 RNA binding domain LIN98_RS00455 PF00013 KH domain LIN98_RS00460 PF04074 YhcH/YjgK/YiaL LIN98_RS00465 PF01510 N-acetylmuramoyl-L-alanine amidase LIN98_RS00470 PF07963 Prokaryotic N-terminal methylation motif LIN98_RS00480 PF00482 Type II secretion system (T2SS), protein F LIN98_RS00490 PF01121 Dephospho-CoA kinase LIN98_RS00495 PF03884 DNA gyrase inhibitor YacG LIN98_RS00505 PF01235 Sodium:alanine symporter family LIN98_RS00510 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LIN98_RS00515 PF17311 Family of unknown function (DUF5358) LIN98_RS00520 PF02954 Bacterial regulatory protein, Fis family LIN98_RS00525 PF01207 Dihydrouridine synthase (Dus) LIN98_RS00535 PF02661 Fic/DOC family LIN98_RS00540 PF00474 Sodium:solute symporter family LIN98_RS00545 PF06196 Protein of unknown function (DUF997) LIN98_RS00550 PF04575 Protein of unknown function (DUF560) LIN98_RS00555 PF17484 N-Lobe handle Tf-binding protein B LIN98_RS00555 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B LIN98_RS00555 PF17483 C-lobe handle domain of Tf-binding protein B LIN98_RS00560 PF00289 Biotin carboxylase, N-terminal domain LIN98_RS00560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIN98_RS00560 PF02785 Biotin carboxylase C-terminal domain LIN98_RS00565 PF00364 Biotin-requiring enzyme LIN98_RS00570 PF01220 Dehydroquinase class II LIN98_RS00575 PF13378 Enolase C-terminal domain-like LIN98_RS00590 PF00378 Enoyl-CoA hydratase/isomerase LIN98_RS00595 PF00121 Triosephosphate isomerase LIN98_RS00605 PF06969 HemN C-terminal domain LIN98_RS00605 PF04055 Radical SAM superfamily LIN98_RS00610 PF10675 Protein of unknown function (DUF2489) LIN98_RS00615 PF04220 Der GTPase activator (YihI) LIN98_RS00620 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIN98_RS00625 PF00303 Thymidylate synthase LIN98_RS00630 PF01790 Prolipoprotein diacylglyceryl transferase LIN98_RS00635 PF01925 Sulfite exporter TauE/SafE LIN98_RS00640 PF00293 NUDIX domain LIN98_RS00645 PF05025 RbsD / FucU transport protein family LIN98_RS00650 PF00005 ABC transporter LIN98_RS00660 PF13407 Periplasmic binding protein domain LIN98_RS00665 PF00294 pfkB family carbohydrate kinase LIN98_RS00670 PF00313 'Cold-shock' DNA-binding domain LIN98_RS00680 PF00749 tRNA synthetases class I (E and Q), catalytic domain LIN98_RS00700 PF04488 Glycosyltransferase sugar-binding region containing DXD motif LIN98_RS00705 PF00206 Lyase LIN98_RS00705 PF14698 Argininosuccinate lyase C-terminal LIN98_RS00710 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LIN98_RS00710 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LIN98_RS00715 PF06628 Catalase-related immune-responsive LIN98_RS00715 PF00199 Catalase LIN98_RS00725 PF01336 OB-fold nucleic acid binding domain LIN98_RS00725 PF02811 PHP domain LIN98_RS00725 PF14579 Helix-hairpin-helix motif LIN98_RS00725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LIN98_RS00725 PF07733 Bacterial DNA polymerase III alpha NTPase domain LIN98_RS00730 PF00501 AMP-binding enzyme LIN98_RS00735 PF05662 Coiled stalk of trimeric autotransporter adhesin LIN98_RS00735 PF03895 YadA-like membrane anchor domain LIN98_RS00735 PF13018 Extended Signal Peptide of Type V secretion system LIN98_RS00735 PF05658 Head domain of trimeric autotransporter adhesin LIN98_RS00740 PF13597 Anaerobic ribonucleoside-triphosphate reductase LIN98_RS00740 PF03477 ATP cone domain LIN98_RS00750 PF01026 TatD related DNase LIN98_RS00765 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LIN98_RS00770 PF09190 DALR domain LIN98_RS00770 PF01406 tRNA synthetases class I (C) catalytic domain LIN98_RS00775 PF04055 Radical SAM superfamily LIN98_RS00775 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LIN98_RS00780 PF03099 Biotin/lipoate A/B protein ligase family LIN98_RS00785 PF04359 Protein of unknown function (DUF493) LIN98_RS00790 PF00768 D-alanyl-D-alanine carboxypeptidase LIN98_RS00790 PF07943 Penicillin-binding protein 5, C-terminal domain LIN98_RS00795 PF05036 Sporulation related domain LIN98_RS00795 PF03330 Lytic transglycolase LIN98_RS00800 PF01098 Cell cycle protein LIN98_RS00805 PF03717 Penicillin-binding Protein dimerisation domain LIN98_RS00805 PF00905 Penicillin binding protein transpeptidase domain LIN98_RS00810 PF02590 Predicted SPOUT methyltransferase LIN98_RS00820 PF00271 Helicase conserved C-terminal domain LIN98_RS00820 PF00270 DEAD/DEAH box helicase LIN98_RS00825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIN98_RS00825 PF07497 Rho termination factor, RNA-binding domain LIN98_RS00825 PF07498 Rho termination factor, N-terminal domain LIN98_RS00830 PF07690 Major Facilitator Superfamily LIN98_RS00835 PF00550 Phosphopantetheine attachment site LIN98_RS00845 PF00698 Acyl transferase domain LIN98_RS00850 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LIN98_RS00850 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LIN98_RS00855 PF02504 Fatty acid synthesis protein LIN98_RS00860 PF01783 Ribosomal L32p protein family LIN98_RS00865 PF02620 Large ribosomal RNA subunit accumulation protein YceD LIN98_RS00875 PF08241 Methyltransferase domain LIN98_RS00880 PF04301 Protein of unknown function (DUF452) LIN98_RS00885 PF00155 Aminotransferase class I and II LIN98_RS00890 PF00202 Aminotransferase class-III LIN98_RS00895 PF02666 Phosphatidylserine decarboxylase LIN98_RS00900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIN98_RS00900 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LIN98_RS00910 PF06738 Putative threonine/serine exporter LIN98_RS00915 PF06738 Putative threonine/serine exporter LIN98_RS00915 PF12821 Threonine/Serine exporter, ThrE LIN98_RS00920 PF00186 Dihydrofolate reductase LIN98_RS00925 PF00571 CBS domain LIN98_RS00925 PF03471 Transporter associated domain LIN98_RS00925 PF01595 Cyclin M transmembrane N-terminal domain LIN98_RS00930 PF07509 Protein of unknown function (DUF1523) LIN98_RS00935 PF01026 TatD related DNase LIN98_RS00940 PF09115 DNA polymerase III, delta subunit, C terminal LIN98_RS00945 PF02223 Thymidylate kinase LIN98_RS00950 PF02618 YceG-like family LIN98_RS00955 PF00543 Nitrogen regulatory protein P-II LIN98_RS00960 PF00455 DeoR C terminal sensor domain LIN98_RS00960 PF08220 DeoR-like helix-turn-helix domain LIN98_RS00965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LIN98_RS00965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LIN98_RS00970 PF17042 Nucleotide-binding C-terminal domain LIN98_RS00970 PF07005 Sugar-binding N-terminal domain LIN98_RS00975 PF00596 Class II Aldolase and Adducin N-terminal domain LIN98_RS00980 PF01261 Xylose isomerase-like TIM barrel LIN98_RS00985 PF02447 GntP family permease LIN98_RS01005 PF01624 MutS domain I LIN98_RS01005 PF05188 MutS domain II LIN98_RS01005 PF05192 MutS domain III LIN98_RS01005 PF05190 MutS family domain IV LIN98_RS01005 PF00488 MutS domain V LIN98_RS01015 PF04445 Putative SAM-dependent methyltransferase LIN98_RS01020 PF05958 tRNA (Uracil-5-)-methyltransferase LIN98_RS01025 PF04219 Protein of unknown function, DUF LIN98_RS01030 PF01323 DSBA-like thioredoxin domain LIN98_RS01035 PF06288 Protein of unknown function (DUF1040) LIN98_RS01040 PF12804 MobA-like NTP transferase domain LIN98_RS01050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LIN98_RS01050 PF00381 PTS HPr component phosphorylation site LIN98_RS01055 PF00294 pfkB family carbohydrate kinase LIN98_RS01060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LIN98_RS01075 PF02525 Flavodoxin-like fold LIN98_RS01090 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LIN98_RS01095 PF00467 KOW motif LIN98_RS01095 PF02357 Transcription termination factor nusG LIN98_RS01100 PF00298 Ribosomal protein L11, RNA binding domain LIN98_RS01100 PF03946 Ribosomal protein L11, N-terminal domain LIN98_RS01105 PF00687 Ribosomal protein L1p/L10e family LIN98_RS01110 PF00466 Ribosomal protein L10 LIN98_RS01115 PF16320 Ribosomal protein L7/L12 dimerisation domain LIN98_RS01115 PF00542 Ribosomal protein L7/L12 C-terminal domain LIN98_RS01120 PF04560 RNA polymerase Rpb2, domain 7 LIN98_RS01120 PF00562 RNA polymerase Rpb2, domain 6 LIN98_RS01120 PF10385 RNA polymerase beta subunit external 1 domain LIN98_RS01120 PF04565 RNA polymerase Rpb2, domain 3 LIN98_RS01120 PF04561 RNA polymerase Rpb2, domain 2 LIN98_RS01120 PF04563 RNA polymerase beta subunit LIN98_RS01125 PF04998 RNA polymerase Rpb1, domain 5 LIN98_RS01125 PF05000 RNA polymerase Rpb1, domain 4 LIN98_RS01125 PF04983 RNA polymerase Rpb1, domain 3 LIN98_RS01125 PF04997 RNA polymerase Rpb1, domain 1 LIN98_RS01125 PF00623 RNA polymerase Rpb1, domain 2 LIN98_RS01135 PF00366 Ribosomal protein S17 LIN98_RS01140 PF00831 Ribosomal L29 protein LIN98_RS01145 PF00252 Ribosomal protein L16p/L10e LIN98_RS01150 PF07650 KH domain LIN98_RS01150 PF00189 Ribosomal protein S3, C-terminal domain LIN98_RS01155 PF00237 Ribosomal protein L22p/L17e LIN98_RS01160 PF00203 Ribosomal protein S19 LIN98_RS01165 PF00181 Ribosomal Proteins L2, RNA binding domain LIN98_RS01165 PF03947 Ribosomal Proteins L2, C-terminal domain LIN98_RS01170 PF00276 Ribosomal protein L23 LIN98_RS01175 PF00573 Ribosomal protein L4/L1 family LIN98_RS01180 PF00297 Ribosomal protein L3 LIN98_RS01185 PF00338 Ribosomal protein S10p/S20e LIN98_RS01190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIN98_RS01190 PF03466 LysR substrate binding domain LIN98_RS01200 PF01144 Coenzyme A transferase LIN98_RS01205 PF02667 Short chain fatty acid transporter LIN98_RS01210 PF02803 Thiolase, C-terminal domain LIN98_RS01210 PF00108 Thiolase, N-terminal domain LIN98_RS01215 PF01037 Lrp/AsnC ligand binding domain LIN98_RS01215 PF13404 AsnC-type helix-turn-helix domain LIN98_RS01220 PF03606 C4-dicarboxylate anaerobic carrier LIN98_RS01225 PF00696 Amino acid kinase family LIN98_RS01230 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LIN98_RS01230 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LIN98_RS01235 PF00654 Voltage gated chloride channel LIN98_RS01240 PF01207 Dihydrouridine synthase (Dus) LIN98_RS01245 PF03590 Aspartate-ammonia ligase LIN98_RS01250 PF01037 Lrp/AsnC ligand binding domain LIN98_RS01250 PF13404 AsnC-type helix-turn-helix domain LIN98_RS01255 PF01048 Phosphorylase superfamily LIN98_RS01260 PF01594 AI-2E family transporter LIN98_RS01265 PF03960 ArsC family LIN98_RS01270 PF17347 Family of unknown function (DUF5377) LIN98_RS01275 PF03889 Alternative ribosome-rescue factor A LIN98_RS01280 PF18693 TRAM domain LIN98_RS01280 PF04055 Radical SAM superfamily LIN98_RS01280 PF00919 Uncharacterized protein family UPF0004 LIN98_RS01285 PF01451 Low molecular weight phosphotyrosine protein phosphatase LIN98_RS01290 PF04325 Protein of unknown function (DUF465) LIN98_RS01295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIN98_RS01305 PF06877 Regulator of ribonuclease activity B LIN98_RS01310 PF01741 Large-conductance mechanosensitive channel, MscL LIN98_RS01315 PF02080 TrkA-C domain LIN98_RS01315 PF02254 TrkA-N domain LIN98_RS01320 PF01189 16S rRNA methyltransferase RsmB/F LIN98_RS01320 PF01029 NusB family LIN98_RS01325 PF02911 Formyl transferase, C-terminal domain LIN98_RS01325 PF00551 Formyl transferase LIN98_RS01330 PF01327 Polypeptide deformylase LIN98_RS01365 PF00005 ABC transporter LIN98_RS01365 PF09383 NIL domain LIN98_RS01370 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS01375 PF03180 NLPA lipoprotein LIN98_RS01385 PF00588 SpoU rRNA Methylase family LIN98_RS01390 PF04393 Protein of unknown function (DUF535) LIN98_RS01395 PF01926 50S ribosome-binding GTPase LIN98_RS01420 PF06508 Queuosine biosynthesis protein QueC LIN98_RS01440 PF04717 Type VI secretion system, phage-baseplate injector LIN98_RS01445 PF03527 RHS protein LIN98_RS01525 PF04748 Divergent polysaccharide deacetylase LIN98_RS01530 PF01551 Peptidase family M23 LIN98_RS01535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIN98_RS01535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIN98_RS01535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIN98_RS01535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIN98_RS01540 PF00300 Histidine phosphatase superfamily (branch 1) LIN98_RS01545 PF03887 YfbU domain LIN98_RS01550 PF04333 MlaA lipoprotein LIN98_RS01555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIN98_RS01560 PF00004 ATPase family associated with various cellular activities (AAA) LIN98_RS01560 PF10431 C-terminal, D2-small domain, of ClpB protein LIN98_RS01560 PF07724 AAA domain (Cdc48 subfamily) LIN98_RS01565 PF00227 Proteasome subunit LIN98_RS01570 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LIN98_RS01580 PF03222 Tryptophan/tyrosine permease family LIN98_RS01585 PF00719 Inorganic pyrophosphatase LIN98_RS01590 PF01435 Peptidase family M48 LIN98_RS01595 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LIN98_RS01600 PF00579 tRNA synthetases class I (W and Y) LIN98_RS01605 PF00448 SRP54-type protein, GTPase domain LIN98_RS01605 PF02881 SRP54-type protein, helical bundle domain LIN98_RS01615 PF03610 PTS system fructose IIA component LIN98_RS01615 PF03830 PTS system sorbose subfamily IIB component LIN98_RS01620 PF03609 PTS system sorbose-specific iic component LIN98_RS01625 PF03613 PTS system mannose/fructose/sorbose family IID component LIN98_RS01635 PF07670 Nucleoside recognition LIN98_RS01635 PF07662 Na+ dependent nucleoside transporter C-terminus LIN98_RS01635 PF01773 Na+ dependent nucleoside transporter N-terminus LIN98_RS01640 PF01048 Phosphorylase superfamily LIN98_RS01650 PF14883 Hypothetical glycosyl hydrolase family 13 LIN98_RS01650 PF01522 Polysaccharide deacetylase LIN98_RS01655 PF00535 Glycosyl transferase family 2 LIN98_RS01665 PF07690 Major Facilitator Superfamily LIN98_RS01670 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LIN98_RS01670 PF01243 Pyridoxamine 5'-phosphate oxidase LIN98_RS01695 PF00271 Helicase conserved C-terminal domain LIN98_RS01695 PF00270 DEAD/DEAH box helicase LIN98_RS01700 PF05175 Methyltransferase small domain LIN98_RS01705 PF04973 Nicotinamide mononucleotide transporter LIN98_RS01710 PF00849 RNA pseudouridylate synthase LIN98_RS01720 PF02664 S-Ribosylhomocysteinase (LuxS) LIN98_RS01730 PF00132 Bacterial transferase hexapeptide (six repeats) LIN98_RS01730 PF12464 Maltose acetyltransferase LIN98_RS01735 PF13419 Haloacid dehalogenase-like hydrolase LIN98_RS01740 PF00874 PRD domain LIN98_RS01760 PF00580 UvrD/REP helicase N-terminal domain LIN98_RS01760 PF13361 UvrD-like helicase C-terminal domain LIN98_RS01765 PF07119 Protein of unknown function (DUF1375) LIN98_RS01775 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LIN98_RS01775 PF01612 3'-5' exonuclease LIN98_RS01775 PF00476 DNA polymerase family A LIN98_RS01775 PF01367 5'-3' exonuclease, C-terminal SAM fold LIN98_RS01790 PF00149 Calcineurin-like phosphoesterase LIN98_RS01790 PF02872 5'-nucleotidase, C-terminal domain LIN98_RS01800 PF01370 NAD dependent epimerase/dehydratase family LIN98_RS01805 PF02661 Fic/DOC family LIN98_RS01810 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LIN98_RS01815 PF03738 Glutathionylspermidine synthase preATP-grasp LIN98_RS01815 PF05257 CHAP domain LIN98_RS01820 PF03264 NapC/NirT cytochrome c family, N-terminal region LIN98_RS01825 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LIN98_RS01830 PF12801 4Fe-4S binding domain LIN98_RS01830 PF12837 4Fe-4S binding domain LIN98_RS01835 PF12800 4Fe-4S binding domain LIN98_RS01835 PF12838 4Fe-4S dicluster domain LIN98_RS01840 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIN98_RS01840 PF00384 Molybdopterin oxidoreductase LIN98_RS01840 PF01568 Molydopterin dinucleotide binding domain LIN98_RS01840 PF10518 TAT (twin-arginine translocation) pathway signal sequence LIN98_RS01845 PF03927 NapD protein LIN98_RS01850 PF00672 HAMP domain LIN98_RS01850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIN98_RS01850 PF07730 Histidine kinase LIN98_RS01850 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LIN98_RS01855 PF01565 FAD binding domain LIN98_RS01855 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LIN98_RS01865 PF04542 Sigma-70 region 2 LIN98_RS01865 PF04545 Sigma-70, region 4 LIN98_RS01865 PF00140 Sigma-70 factor, region 1.2 LIN98_RS01870 PF04993 TfoX N-terminal domain LIN98_RS01870 PF04994 TfoX C-terminal domain LIN98_RS01875 PF00009 Elongation factor Tu GTP binding domain LIN98_RS01875 PF03144 Elongation factor Tu domain 2 LIN98_RS01875 PF03143 Elongation factor Tu C-terminal domain LIN98_RS01880 PF00679 Elongation factor G C-terminus LIN98_RS01880 PF14492 Elongation Factor G, domain II LIN98_RS01880 PF03764 Elongation factor G, domain IV LIN98_RS01880 PF03144 Elongation factor Tu domain 2 LIN98_RS01880 PF00009 Elongation factor Tu GTP binding domain LIN98_RS01885 PF00177 Ribosomal protein S7p/S5e LIN98_RS01890 PF00164 Ribosomal protein S12/S23 LIN98_RS01895 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LIN98_RS01895 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LIN98_RS01900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIN98_RS01900 PF03466 LysR substrate binding domain LIN98_RS01905 PF00892 EamA-like transporter family LIN98_RS01910 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LIN98_RS01910 PF01488 Shikimate / quinate 5-dehydrogenase LIN98_RS01910 PF08501 Shikimate dehydrogenase substrate binding domain LIN98_RS01915 PF01300 Telomere recombination LIN98_RS01920 PF01396 Topoisomerase DNA binding C4 zinc finger LIN98_RS01925 PF02646 RmuC family LIN98_RS01930 PF03350 Uncharacterized protein family, UPF0114 LIN98_RS01935 PF00581 Rhodanese-like domain LIN98_RS01940 PF17364 Family of unknown function (DUF5389) LIN98_RS01945 PF01694 Rhomboid family LIN98_RS01950 PF00455 DeoR C terminal sensor domain LIN98_RS01950 PF08220 DeoR-like helix-turn-helix domain LIN98_RS01955 PF07715 TonB-dependent Receptor Plug Domain LIN98_RS01955 PF00593 TonB dependent receptor LIN98_RS01960 PF06472 ABC transporter transmembrane region 2 LIN98_RS01960 PF00005 ABC transporter LIN98_RS01965 PF06826 Predicted Permease Membrane Region LIN98_RS01965 PF02080 TrkA-C domain LIN98_RS01970 PF00696 Amino acid kinase family LIN98_RS01975 PF01765 Ribosome recycling factor LIN98_RS01980 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LIN98_RS01980 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LIN98_RS01980 PF13288 DXP reductoisomerase C-terminal domain LIN98_RS01985 PF01255 Putative undecaprenyl diphosphate synthase LIN98_RS01995 PF00595 PDZ domain LIN98_RS01995 PF17820 PDZ domain LIN98_RS01995 PF02163 Peptidase family M50 LIN98_RS02000 PF01103 Surface antigen LIN98_RS02000 PF07244 Surface antigen variable number repeat LIN98_RS02005 PF03938 Outer membrane protein (OmpH-like) LIN98_RS02010 PF00132 Bacterial transferase hexapeptide (six repeats) LIN98_RS02010 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LIN98_RS02015 PF07977 FabA-like domain LIN98_RS02020 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LIN98_RS02020 PF00132 Bacterial transferase hexapeptide (six repeats) LIN98_RS02025 PF02684 Lipid-A-disaccharide synthetase LIN98_RS02030 PF01351 Ribonuclease HII LIN98_RS02035 PF03600 Citrate transporter LIN98_RS02035 PF02080 TrkA-C domain LIN98_RS02040 PF01066 CDP-alcohol phosphatidyltransferase LIN98_RS02055 PF00994 Probable molybdopterin binding domain LIN98_RS02080 PF00923 Transaldolase/Fructose-6-phosphate aldolase LIN98_RS02085 PF02780 Transketolase, C-terminal domain LIN98_RS02085 PF00456 Transketolase, thiamine diphosphate binding domain LIN98_RS02085 PF02779 Transketolase, pyrimidine binding domain LIN98_RS02090 PF01042 Endoribonuclease L-PSP LIN98_RS02095 PF02631 RecX family LIN98_RS02100 PF00154 recA bacterial DNA recombination protein LIN98_RS02110 PF01914 MarC family integral membrane protein LIN98_RS02120 PF13617 YnbE-like lipoprotein LIN98_RS02130 PF13356 Arm DNA-binding domain LIN98_RS02130 PF00589 Phage integrase family LIN98_RS02175 PF08346 AntA/AntB antirepressor LIN98_RS02175 PF10548 P22AR C-terminal domain LIN98_RS02205 PF01791 DeoC/LacD family aldolase LIN98_RS02210 PF00455 DeoR C terminal sensor domain LIN98_RS02210 PF08220 DeoR-like helix-turn-helix domain LIN98_RS02220 PF00132 Bacterial transferase hexapeptide (six repeats) LIN98_RS02220 PF12804 MobA-like NTP transferase domain LIN98_RS02225 PF03702 Anhydro-N-acetylmuramic acid kinase LIN98_RS02230 PF01380 SIS domain LIN98_RS02255 PF01266 FAD dependent oxidoreductase LIN98_RS02260 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIN98_RS02265 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS02270 PF00005 ABC transporter LIN98_RS02275 PF04077 DsrH like protein LIN98_RS02280 PF02635 DsrE/DsrF-like family LIN98_RS02285 PF02635 DsrE/DsrF-like family LIN98_RS02290 PF08348 YheO-like PAS domain LIN98_RS02290 PF13309 HTH domain LIN98_RS02295 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LIN98_RS02295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIN98_RS02300 PF04102 SlyX LIN98_RS02305 PF00462 Glutaredoxin LIN98_RS02305 PF08534 Redoxin LIN98_RS02310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIN98_RS02310 PF03466 LysR substrate binding domain LIN98_RS02315 PF00440 Bacterial regulatory proteins, tetR family LIN98_RS02320 PF00664 ABC transporter transmembrane region LIN98_RS02320 PF00005 ABC transporter LIN98_RS02325 PF00005 ABC transporter LIN98_RS02325 PF00664 ABC transporter transmembrane region LIN98_RS02330 PF03605 Anaerobic c4-dicarboxylate membrane transporter LIN98_RS02335 PF00581 Rhodanese-like domain LIN98_RS02340 PF02556 Preprotein translocase subunit SecB LIN98_RS02345 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LIN98_RS02345 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LIN98_RS02350 PF06426 Serine acetyltransferase, N-terminal LIN98_RS02350 PF00132 Bacterial transferase hexapeptide (six repeats) LIN98_RS02355 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LIN98_RS02360 PF06005 Cell division protein ZapB LIN98_RS02365 PF00258 Flavodoxin LIN98_RS02370 PF13932 GidA associated domain LIN98_RS02370 PF01134 Glucose inhibited division protein A LIN98_RS02375 PF05368 NmrA-like family LIN98_RS02380 PF01638 HxlR-like helix-turn-helix LIN98_RS02385 PF02527 rRNA small subunit methyltransferase G LIN98_RS02390 PF03899 ATP synthase I chain LIN98_RS02395 PF00119 ATP synthase A chain LIN98_RS02400 PF00137 ATP synthase subunit C LIN98_RS02405 PF00430 ATP synthase B/B' CF(0) LIN98_RS02410 PF00213 ATP synthase delta (OSCP) subunit LIN98_RS02415 PF00306 ATP synthase alpha/beta chain, C terminal domain LIN98_RS02415 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIN98_RS02415 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIN98_RS02420 PF00231 ATP synthase LIN98_RS02425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIN98_RS02425 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIN98_RS02430 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LIN98_RS02435 PF13416 Bacterial extracellular solute-binding protein LIN98_RS02445 PF03613 PTS system mannose/fructose/sorbose family IID component LIN98_RS02450 PF03609 PTS system sorbose-specific iic component LIN98_RS02455 PF03830 PTS system sorbose subfamily IIB component LIN98_RS02455 PF03610 PTS system fructose IIA component LIN98_RS02460 PF07690 Major Facilitator Superfamily LIN98_RS02465 PF12833 Helix-turn-helix domain LIN98_RS02470 PF03553 Na+/H+ antiporter family LIN98_RS02475 PF00155 Aminotransferase class I and II LIN98_RS02480 PF02653 Branched-chain amino acid transport system / permease component LIN98_RS02485 PF00005 ABC transporter LIN98_RS02490 PF13407 Periplasmic binding protein domain LIN98_RS02500 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIN98_RS02500 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIN98_RS02520 PF13333 Integrase core domain LIN98_RS02520 PF13276 HTH-like domain LIN98_RS02520 PF00665 Integrase core domain LIN98_RS02525 PF13091 PLD-like domain LIN98_RS02530 PF08032 RNA 2'-O ribose methyltransferase substrate binding LIN98_RS02530 PF00588 SpoU rRNA Methylase family LIN98_RS02535 PF00037 4Fe-4S binding domain LIN98_RS02540 PF00445 Ribonuclease T2 family LIN98_RS02545 PF00162 Phosphoglycerate kinase LIN98_RS02550 PF01116 Fructose-bisphosphate aldolase class-II LIN98_RS02555 PF04932 O-Antigen ligase LIN98_RS02560 PF12146 Serine aminopeptidase, S33 LIN98_RS02580 PF18075 FtsX extracellular domain LIN98_RS02585 PF00005 ABC transporter LIN98_RS02590 PF13419 Haloacid dehalogenase-like hydrolase LIN98_RS02595 PF00834 Ribulose-phosphate 3 epimerase family LIN98_RS02600 PF04977 Septum formation initiator LIN98_RS02605 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LIN98_RS02610 PF02542 YgbB family LIN98_RS02615 PF01142 tRNA pseudouridine synthase D (TruD) LIN98_RS02620 PF01975 Survival protein SurE LIN98_RS02625 PF09335 SNARE associated Golgi protein LIN98_RS02635 PF01476 LysM domain LIN98_RS02635 PF01551 Peptidase family M23 LIN98_RS02645 PF00535 Glycosyl transferase family 2 LIN98_RS02650 PF00534 Glycosyl transferases group 1 LIN98_RS02650 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LIN98_RS02655 PF01467 Cytidylyltransferase-like LIN98_RS02665 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LIN98_RS02670 PF02627 Carboxymuconolactone decarboxylase family LIN98_RS02675 PF02311 AraC-like ligand binding domain LIN98_RS02675 PF12833 Helix-turn-helix domain LIN98_RS02680 PF00664 ABC transporter transmembrane region LIN98_RS02680 PF00005 ABC transporter LIN98_RS02685 PF01553 Acyltransferase LIN98_RS02690 PF01726 LexA DNA binding domain LIN98_RS02690 PF00717 Peptidase S24-like LIN98_RS02695 PF01250 Ribosomal protein S6 LIN98_RS02700 PF00436 Single-strand binding protein family LIN98_RS02705 PF01084 Ribosomal protein S18 LIN98_RS02710 PF01281 Ribosomal protein L9, N-terminal domain LIN98_RS02710 PF03948 Ribosomal protein L9, C-terminal domain LIN98_RS02715 PF02481 DNA recombination-mediator protein A LIN98_RS02715 PF17782 DprA winged helix domain LIN98_RS02720 PF03009 Glycerophosphoryl diester phosphodiesterase family LIN98_RS02725 PF07690 Major Facilitator Superfamily LIN98_RS02730 PF00588 SpoU rRNA Methylase family LIN98_RS02730 PF08032 RNA 2'-O ribose methyltransferase substrate binding LIN98_RS02735 PF00575 S1 RNA binding domain LIN98_RS02735 PF17876 Cold shock domain LIN98_RS02735 PF08461 Ribonuclease R winged-helix domain LIN98_RS02735 PF08206 Ribonuclease B OB domain LIN98_RS02735 PF00773 RNB domain LIN98_RS02745 PF04085 rod shape-determining protein MreC LIN98_RS02750 PF04093 rod shape-determining protein MreD LIN98_RS02755 PF01245 Ribosomal protein L19 LIN98_RS02760 PF01746 tRNA (Guanine-1)-methyltransferase LIN98_RS02765 PF05239 PRC-barrel domain LIN98_RS02765 PF01782 RimM N-terminal domain LIN98_RS02770 PF00886 Ribosomal protein S16 LIN98_RS02775 PF05195 Aminopeptidase P, N-terminal domain LIN98_RS02775 PF00557 Metallopeptidase family M24 LIN98_RS02780 PF03695 Uncharacterised protein family (UPF0149) LIN98_RS02785 PF05164 Cell division protein ZapA LIN98_RS02795 PF01812 5-formyltetrahydrofolate cyclo-ligase family LIN98_RS02800 PF13525 Outer membrane lipoprotein LIN98_RS02805 PF01479 S4 domain LIN98_RS02805 PF00849 RNA pseudouridylate synthase LIN98_RS02810 PF02578 Multi-copper polyphenol oxidoreductase laccase LIN98_RS02820 PF00881 Nitroreductase family LIN98_RS02825 PF02594 Uncharacterised ACR, YggU family COG1872 LIN98_RS02830 PF02325 YGGT family LIN98_RS02835 PF01544 CorA-like Mg2+ transporter protein LIN98_RS02840 PF13649 Methyltransferase domain LIN98_RS02845 PF00873 AcrB/AcrD/AcrF family LIN98_RS02850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LIN98_RS02855 PF00440 Bacterial regulatory proteins, tetR family LIN98_RS02860 PF05036 Sporulation related domain LIN98_RS02865 PF00270 DEAD/DEAH box helicase LIN98_RS02865 PF00271 Helicase conserved C-terminal domain LIN98_RS02865 PF17764 3′ DNA-binding domain (3′BD) LIN98_RS02865 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LIN98_RS02865 PF18074 Primosomal protein N C-terminal domain LIN98_RS02870 PF09612 Bacterial protein of unknown function (HtrL_YibB) LIN98_RS02880 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) LIN98_RS02885 PF01197 Ribosomal protein L31 LIN98_RS02890 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) LIN98_RS02905 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LIN98_RS02905 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LIN98_RS02905 PF06827 Zinc finger found in FPG and IleRS LIN98_RS02910 PF00471 Ribosomal protein L33 LIN98_RS02915 PF00830 Ribosomal L28 family LIN98_RS02920 PF04002 RadC-like JAB domain LIN98_RS02925 PF04127 DNA / pantothenate metabolism flavoprotein LIN98_RS02925 PF02441 Flavoprotein LIN98_RS02930 PF00692 dUTPase LIN98_RS02935 PF00440 Bacterial regulatory proteins, tetR family LIN98_RS02940 PF06794 Uncharacterised protein family (UPF0270) LIN98_RS02945 PF00027 Cyclic nucleotide-binding domain LIN98_RS02945 PF13545 Crp-like helix-turn-helix domain LIN98_RS02950 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIN98_RS02950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIN98_RS02955 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LIN98_RS02960 PF17092 Penicillin-binding protein OB-like domain LIN98_RS02960 PF00912 Transglycosylase LIN98_RS02960 PF00905 Penicillin binding protein transpeptidase domain LIN98_RS02965 PF11104 Type IV pilus assembly protein PilM; LIN98_RS02985 PF00263 Bacterial type II and III secretion system protein LIN98_RS02985 PF03958 Bacterial type II/III secretion system short domain LIN98_RS02990 PF01202 Shikimate kinase LIN98_RS02995 PF01761 3-dehydroquinate synthase LIN98_RS03000 PF02086 D12 class N6 adenine-specific DNA methyltransferase LIN98_RS03005 PF00436 Single-strand binding protein family LIN98_RS03010 PF17755 UvrA DNA-binding domain LIN98_RS03010 PF17760 UvrA interaction domain LIN98_RS03020 PF00665 Integrase core domain LIN98_RS03020 PF13333 Integrase core domain LIN98_RS03020 PF13276 HTH-like domain LIN98_RS03025 PF13411 MerR HTH family regulatory protein LIN98_RS03030 PF05258 Dna[CI] antecedent, DciA LIN98_RS03040 PF02810 SEC-C motif LIN98_RS03040 PF07517 SecA DEAD-like domain LIN98_RS03040 PF07516 SecA Wing and Scaffold domain LIN98_RS03040 PF01043 SecA preprotein cross-linking domain LIN98_RS03045 PF00293 NUDIX domain LIN98_RS03050 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LIN98_RS03050 PF06144 DNA polymerase III, delta subunit LIN98_RS03055 PF04390 Lipopolysaccharide-assembly LIN98_RS03060 PF08264 Anticodon-binding domain of tRNA LIN98_RS03060 PF00133 tRNA synthetases class I (I, L, M and V) LIN98_RS03060 PF13603 Leucyl-tRNA synthetase, Domain 2 LIN98_RS03070 PF01909 Nucleotidyltransferase domain LIN98_RS03075 PF08780 Nucleotidyltransferase substrate binding protein like LIN98_RS03080 PF00149 Calcineurin-like phosphoesterase LIN98_RS03085 PF00398 Ribosomal RNA adenine dimethylase LIN98_RS03090 PF09312 SurA N-terminal domain LIN98_RS03090 PF00639 PPIC-type PPIASE domain LIN98_RS03095 PF00156 Phosphoribosyl transferase domain LIN98_RS03105 PF04356 Protein of unknown function (DUF489) LIN98_RS03110 PF08328 Adenylosuccinate lyase C-terminal LIN98_RS03110 PF00206 Lyase LIN98_RS03120 PF00106 short chain dehydrogenase LIN98_RS03130 PF08240 Alcohol dehydrogenase GroES-like domain LIN98_RS03130 PF00107 Zinc-binding dehydrogenase LIN98_RS03135 PF00756 Putative esterase LIN98_RS03140 PF02978 Signal peptide binding domain LIN98_RS03140 PF00448 SRP54-type protein, GTPase domain LIN98_RS03140 PF02881 SRP54-type protein, helical bundle domain LIN98_RS03145 PF01578 Cytochrome C assembly protein LIN98_RS03150 PF00571 CBS domain LIN98_RS03150 PF03471 Transporter associated domain LIN98_RS03150 PF01595 Cyclin M transmembrane N-terminal domain LIN98_RS03155 PF01618 MotA/TolQ/ExbB proton channel family LIN98_RS03160 PF02472 Biopolymer transport protein ExbD/TolR LIN98_RS03165 PF03544 Gram-negative bacterial TonB protein C-terminal LIN98_RS03175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIN98_RS03175 PF00384 Molybdopterin oxidoreductase LIN98_RS03175 PF01568 Molydopterin dinucleotide binding domain LIN98_RS03180 PF13247 4Fe-4S dicluster domain LIN98_RS03180 PF12800 4Fe-4S binding domain LIN98_RS03185 PF04976 DMSO reductase anchor subunit (DmsC) LIN98_RS03190 PF02613 Nitrate reductase delta subunit LIN98_RS03195 PF12838 4Fe-4S dicluster domain LIN98_RS03195 PF00037 4Fe-4S binding domain LIN98_RS03200 PF02091 Glycyl-tRNA synthetase alpha subunit LIN98_RS03220 PF05746 DALR anticodon binding domain LIN98_RS03220 PF02092 Glycyl-tRNA synthetase beta subunit LIN98_RS03225 PF00490 Delta-aminolevulinic acid dehydratase LIN98_RS03230 PF00902 Sec-independent protein translocase protein (TatC) LIN98_RS03240 PF02416 mttA/Hcf106 family LIN98_RS03245 PF01430 Hsp33 protein LIN98_RS03250 PF01479 S4 domain LIN98_RS03255 PF13419 Haloacid dehalogenase-like hydrolase LIN98_RS03260 PF00293 NUDIX domain LIN98_RS03280 PF04224 Protein of unknown function, DUF417 LIN98_RS03285 PF03169 OPT oligopeptide transporter protein LIN98_RS03295 PF00459 Inositol monophosphatase family LIN98_RS03300 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LIN98_RS03300 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LIN98_RS03305 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LIN98_RS03315 PF01177 Asp/Glu/Hydantoin racemase LIN98_RS03330 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LIN98_RS03330 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LIN98_RS03335 PF02801 Beta-ketoacyl synthase, C-terminal domain LIN98_RS03335 PF00109 Beta-ketoacyl synthase, N-terminal domain LIN98_RS03350 PF00109 Beta-ketoacyl synthase, N-terminal domain LIN98_RS03350 PF02801 Beta-ketoacyl synthase, C-terminal domain LIN98_RS03405 PF00550 Phosphopantetheine attachment site LIN98_RS03430 PF13419 Haloacid dehalogenase-like hydrolase LIN98_RS03435 PF02899 Phage integrase, N-terminal SAM-like domain LIN98_RS03435 PF00589 Phage integrase family LIN98_RS03440 PF01678 Diaminopimelate epimerase LIN98_RS03445 PF00551 Formyl transferase LIN98_RS03450 PF00586 AIR synthase related protein, N-terminal domain LIN98_RS03450 PF02769 AIR synthase related protein, C-terminal domain LIN98_RS03455 PF16747 Surface-adhesin protein E LIN98_RS03460 PF17871 AAA lid domain LIN98_RS03460 PF07724 AAA domain (Cdc48 subfamily) LIN98_RS03460 PF00004 ATPase family associated with various cellular activities (AAA) LIN98_RS03460 PF02861 Clp amino terminal domain, pathogenicity island component LIN98_RS03460 PF10431 C-terminal, D2-small domain, of ClpB protein LIN98_RS03465 PF10531 SLBB domain LIN98_RS03470 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIN98_RS03470 PF02774 Semialdehyde dehydrogenase, dimerisation domain LIN98_RS03480 PF00156 Phosphoribosyl transferase domain LIN98_RS03485 PF01106 NifU-like domain LIN98_RS03485 PF01521 Iron-sulphur cluster biosynthesis LIN98_RS03495 PF05525 Branched-chain amino acid transport protein LIN98_RS03500 PF06418 CTP synthase N-terminus LIN98_RS03500 PF00117 Glutamine amidotransferase class-I LIN98_RS03510 PF00238 Ribosomal protein L14p/L23e LIN98_RS03515 PF00467 KOW motif LIN98_RS03515 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LIN98_RS03520 PF00281 Ribosomal protein L5 LIN98_RS03520 PF00673 ribosomal L5P family C-terminus LIN98_RS03525 PF00253 Ribosomal protein S14p/S29e LIN98_RS03530 PF00410 Ribosomal protein S8 LIN98_RS03535 PF00347 Ribosomal protein L6 LIN98_RS03540 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LIN98_RS03545 PF03719 Ribosomal protein S5, C-terminal domain LIN98_RS03545 PF00333 Ribosomal protein S5, N-terminal domain LIN98_RS03550 PF00327 Ribosomal protein L30p/L7e LIN98_RS03555 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LIN98_RS03560 PF00344 SecY translocase LIN98_RS03565 PF00444 Ribosomal protein L36 LIN98_RS03570 PF00416 Ribosomal protein S13/S18 LIN98_RS03575 PF00411 Ribosomal protein S11 LIN98_RS03580 PF00163 Ribosomal protein S4/S9 N-terminal domain LIN98_RS03580 PF01479 S4 domain LIN98_RS03585 PF01000 RNA polymerase Rpb3/RpoA insert domain LIN98_RS03585 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LIN98_RS03585 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LIN98_RS03590 PF01196 Ribosomal protein L17 LIN98_RS03600 PF03222 Tryptophan/tyrosine permease family LIN98_RS03605 PF00149 Calcineurin-like phosphoesterase LIN98_RS03610 PF13521 AAA domain LIN98_RS03610 PF01467 Cytidylyltransferase-like LIN98_RS03620 PF01206 Sulfurtransferase TusA LIN98_RS03630 PF02386 Cation transport protein LIN98_RS03635 PF12724 Flavodoxin domain LIN98_RS03665 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LIN98_RS03675 PF13333 Integrase core domain LIN98_RS03675 PF13276 HTH-like domain LIN98_RS03675 PF00665 Integrase core domain LIN98_RS03695 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LIN98_RS03700 PF10415 Fumarase C C-terminus LIN98_RS03700 PF00206 Lyase LIN98_RS03710 PF00166 Chaperonin 10 Kd subunit LIN98_RS03715 PF00118 TCP-1/cpn60 chaperonin family LIN98_RS03720 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LIN98_RS03720 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LIN98_RS03735 PF13276 HTH-like domain LIN98_RS03735 PF00665 Integrase core domain LIN98_RS03735 PF13333 Integrase core domain LIN98_RS03745 PF01219 Prokaryotic diacylglycerol kinase LIN98_RS03750 PF13291 ACT domain LIN98_RS03750 PF04607 Region found in RelA / SpoT proteins LIN98_RS03750 PF02824 TGS domain LIN98_RS03755 PF05958 tRNA (Uracil-5-)-methyltransferase LIN98_RS03755 PF01938 TRAM domain LIN98_RS03760 PF02565 Recombination protein O C terminal LIN98_RS03760 PF11967 Recombination protein O N terminal LIN98_RS03765 PF00889 Elongation factor TS LIN98_RS03770 PF00318 Ribosomal protein S2 LIN98_RS03780 PF01571 Aminomethyltransferase folate-binding domain LIN98_RS03785 PF08340 Domain of unknown function (DUF1732) LIN98_RS03785 PF03755 YicC-like family, N-terminal region LIN98_RS03790 PF03725 3' exoribonuclease family, domain 2 LIN98_RS03790 PF01138 3' exoribonuclease family, domain 1 LIN98_RS03795 PF00156 Phosphoribosyl transferase domain LIN98_RS03800 PF00226 DnaJ domain LIN98_RS03800 PF05099 Tellurite resistance protein TerB LIN98_RS03810 PF00005 ABC transporter LIN98_RS03815 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS03820 PF01547 Bacterial extracellular solute-binding protein LIN98_RS03825 PF04320 Protein with unknown function (DUF469) LIN98_RS03830 PF02390 Putative methyltransferase LIN98_RS03835 PF14815 NUDIX domain LIN98_RS03835 PF00730 HhH-GPD superfamily base excision DNA repair protein LIN98_RS03840 PF04362 Bacterial Fe(2+) trafficking LIN98_RS03845 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LIN98_RS03845 PF01464 Transglycosylase SLT domain LIN98_RS03860 PF03923 Uncharacterized lipoprotein LIN98_RS03865 PF01722 BolA-like protein LIN98_RS03870 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LIN98_RS03870 PF11973 NQRA C-terminal domain LIN98_RS03875 PF03116 NQR2, RnfD, RnfE family LIN98_RS03880 PF04205 FMN-binding domain LIN98_RS03885 PF02508 Rnf-Nqr subunit, membrane protein LIN98_RS03890 PF02508 Rnf-Nqr subunit, membrane protein LIN98_RS03895 PF00175 Oxidoreductase NAD-binding domain LIN98_RS03895 PF00111 2Fe-2S iron-sulfur cluster binding domain LIN98_RS03895 PF00970 Oxidoreductase FAD-binding domain LIN98_RS03900 PF02424 ApbE family LIN98_RS03905 PF04400 (Na+)-NQR maturation NqrM LIN98_RS03915 PF03952 Enolase, N-terminal domain LIN98_RS03915 PF00113 Enolase, C-terminal TIM barrel domain LIN98_RS03920 PF03652 Holliday junction resolvase LIN98_RS03925 PF02622 Uncharacterized ACR, COG1678 LIN98_RS03930 PF04452 RNA methyltransferase LIN98_RS03935 PF01340 Met Apo-repressor, MetJ LIN98_RS03940 PF00483 Nucleotidyl transferase LIN98_RS03945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIN98_RS03945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIN98_RS03945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIN98_RS03945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIN98_RS03950 PF02599 Global regulator protein family LIN98_RS03955 PF01411 tRNA synthetases class II (A) LIN98_RS03955 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIN98_RS03955 PF02272 DHHA1 domain LIN98_RS03960 PF00582 Universal stress protein family LIN98_RS03965 PF03819 MazG nucleotide pyrophosphohydrolase domain LIN98_RS03975 PF11893 Domain of unknown function (DUF3413) LIN98_RS03975 PF00884 Sulfatase LIN98_RS03980 PF07208 Protein of unknown function (DUF1414) LIN98_RS03985 PF04245 37-kD nucleoid-associated bacterial protein LIN98_RS03990 PF04355 SmpA / OmlA family LIN98_RS03995 PF00486 Transcriptional regulatory protein, C terminal LIN98_RS03995 PF00072 Response regulator receiver domain LIN98_RS04000 PF16527 Two-component sensor protein CpxA, periplasmic domain LIN98_RS04000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIN98_RS04000 PF00512 His Kinase A (phospho-acceptor) domain LIN98_RS04000 PF00672 HAMP domain LIN98_RS04005 PF03616 Sodium/glutamate symporter LIN98_RS04010 PF02580 D-Tyr-tRNA(Tyr) deacylase LIN98_RS04015 PF03631 Virulence factor BrkB LIN98_RS04025 PF03473 MOSC domain LIN98_RS04030 PF05872 Bacterial protein of unknown function (DUF853) LIN98_RS04040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIN98_RS04040 PF03466 LysR substrate binding domain LIN98_RS04045 PF00248 Aldo/keto reductase family LIN98_RS04050 PF00248 Aldo/keto reductase family LIN98_RS04055 PF00135 Carboxylesterase family LIN98_RS04075 PF03466 LysR substrate binding domain LIN98_RS04075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIN98_RS04080 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LIN98_RS04085 PF01380 SIS domain LIN98_RS04090 PF08220 DeoR-like helix-turn-helix domain LIN98_RS04090 PF00455 DeoR C terminal sensor domain LIN98_RS04095 PF00216 Bacterial DNA-binding protein LIN98_RS04100 PF04222 Protein of unknown function (DUF416) LIN98_RS04105 PF01208 Uroporphyrinogen decarboxylase (URO-D) LIN98_RS04110 PF09297 NADH pyrophosphatase zinc ribbon domain LIN98_RS04110 PF00293 NUDIX domain LIN98_RS04120 PF01293 Phosphoenolpyruvate carboxykinase LIN98_RS04125 PF02541 Ppx/GppA phosphatase family LIN98_RS04130 PF04357 TamB, inner membrane protein subunit of TAM complex LIN98_RS04135 PF17243 POTRA domain TamA domain 1 LIN98_RS04135 PF01103 Surface antigen LIN98_RS04140 PF00072 Response regulator receiver domain LIN98_RS04140 PF00196 Bacterial regulatory proteins, luxR family LIN98_RS04145 PF01295 Adenylate cyclase, class-I LIN98_RS04145 PF12633 Adenylate cyclase NT domain LIN98_RS04150 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LIN98_RS04150 PF03900 Porphobilinogen deaminase, C-terminal domain LIN98_RS04155 PF02602 Uroporphyrinogen-III synthase HemD LIN98_RS04160 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LIN98_RS04165 PF07219 HemY protein N-terminus LIN98_RS04170 PF02592 Putative vitamin uptake transporter LIN98_RS04180 PF04542 Sigma-70 region 2 LIN98_RS04180 PF08281 Sigma-70, region 4 LIN98_RS04190 PF03449 Transcription elongation factor, N-terminal LIN98_RS04190 PF01272 Transcription elongation factor, GreA/GreB, C-term LIN98_RS04200 PF00300 Histidine phosphatase superfamily (branch 1) LIN98_RS04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIN98_RS04210 PF03466 LysR substrate binding domain LIN98_RS04215 PF17674 HHH domain LIN98_RS04215 PF00575 S1 RNA binding domain LIN98_RS04215 PF16921 Tex protein YqgF-like domain LIN98_RS04215 PF09371 Tex-like protein N-terminal domain LIN98_RS04220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIN98_RS04220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIN98_RS04225 PF02653 Branched-chain amino acid transport system / permease component LIN98_RS04230 PF00005 ABC transporter LIN98_RS04235 PF13407 Periplasmic binding protein domain LIN98_RS04240 PF03143 Elongation factor Tu C-terminal domain LIN98_RS04240 PF03144 Elongation factor Tu domain 2 LIN98_RS04240 PF00009 Elongation factor Tu GTP binding domain LIN98_RS04265 PF00485 Phosphoribulokinase / Uridine kinase family LIN98_RS04270 PF01751 Toprim domain LIN98_RS04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIN98_RS04270 PF18053 DNA gyrase B subunit insert domain LIN98_RS04270 PF00986 DNA gyrase B subunit, carboxyl terminus LIN98_RS04270 PF00204 DNA gyrase B LIN98_RS04275 PF09382 RQC domain LIN98_RS04275 PF00570 HRDC domain LIN98_RS04275 PF00271 Helicase conserved C-terminal domain LIN98_RS04275 PF00270 DEAD/DEAH box helicase LIN98_RS04275 PF16124 RecQ zinc-binding LIN98_RS04280 PF01491 Frataxin-like domain LIN98_RS04290 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LIN98_RS04290 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LIN98_RS04295 PF07274 Protein of unknown function (DUF1440) LIN98_RS04300 PF03352 Methyladenine glycosylase LIN98_RS04305 PF04453 LPS transport system D LIN98_RS04305 PF03968 OstA-like protein LIN98_RS04310 PF00156 Phosphoribosyl transferase domain LIN98_RS04315 PF07687 Peptidase dimerisation domain LIN98_RS04315 PF01546 Peptidase family M20/M25/M40 LIN98_RS04320 PF00106 short chain dehydrogenase LIN98_RS04325 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LIN98_RS04335 PF03888 MucB/RseB N-terminal domain LIN98_RS04335 PF17188 MucB/RseB C-terminal domain LIN98_RS04340 PF03873 Anti sigma-E protein RseA, C-terminal domain LIN98_RS04340 PF03872 Anti sigma-E protein RseA, N-terminal domain LIN98_RS04345 PF08281 Sigma-70, region 4 LIN98_RS04345 PF04542 Sigma-70 region 2 LIN98_RS04350 PF03937 Flavinator of succinate dehydrogenase LIN98_RS04355 PF00893 Small Multidrug Resistance protein LIN98_RS04360 PF04073 Aminoacyl-tRNA editing domain LIN98_RS04360 PF03129 Anticodon binding domain LIN98_RS04360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIN98_RS04365 PF12390 Selenocysteine synthase N terminal LIN98_RS04365 PF03841 L-seryl-tRNA selenium transferase LIN98_RS04370 PF00009 Elongation factor Tu GTP binding domain LIN98_RS04370 PF03144 Elongation factor Tu domain 2 LIN98_RS04370 PF09107 Elongation factor SelB, winged helix LIN98_RS04370 PF09106 Elongation factor SelB, winged helix LIN98_RS04380 PF02308 MgtC family LIN98_RS04390 PF00209 Sodium:neurotransmitter symporter family LIN98_RS04440 PF00437 Type II/IV secretion system protein LIN98_RS04455 PF00263 Bacterial type II and III secretion system protein LIN98_RS04455 PF13629 Pilus formation protein N terminal region LIN98_RS04455 PF04972 BON domain LIN98_RS04480 PF02130 Uncharacterized protein family UPF0054 LIN98_RS04490 PF05127 Helicase LIN98_RS04490 PF17176 tRNA-binding domain LIN98_RS04490 PF13718 GNAT acetyltransferase 2 LIN98_RS04500 PF17757 UvrB interaction domain LIN98_RS04500 PF03461 TRCF domain LIN98_RS04500 PF00271 Helicase conserved C-terminal domain LIN98_RS04500 PF00270 DEAD/DEAH box helicase LIN98_RS04500 PF02559 CarD-like/TRCF domain LIN98_RS04505 PF13580 SIS domain LIN98_RS04510 PF00005 ABC transporter LIN98_RS04515 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIN98_RS04520 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS04525 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS04530 PF02554 Carbon starvation protein CstA LIN98_RS04535 PF02381 MraZ protein, putative antitoxin-like LIN98_RS04540 PF01795 MraW methylase family LIN98_RS04545 PF04999 Cell division protein FtsL LIN98_RS04550 PF00905 Penicillin binding protein transpeptidase domain LIN98_RS04550 PF03717 Penicillin-binding Protein dimerisation domain LIN98_RS04555 PF02875 Mur ligase family, glutamate ligase domain LIN98_RS04555 PF01225 Mur ligase family, catalytic domain LIN98_RS04555 PF08245 Mur ligase middle domain LIN98_RS04560 PF08245 Mur ligase middle domain LIN98_RS04560 PF02875 Mur ligase family, glutamate ligase domain LIN98_RS04560 PF01225 Mur ligase family, catalytic domain LIN98_RS04565 PF00953 Glycosyl transferase family 4 LIN98_RS04565 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LIN98_RS04570 PF08245 Mur ligase middle domain LIN98_RS04570 PF02875 Mur ligase family, glutamate ligase domain LIN98_RS04575 PF01098 Cell cycle protein LIN98_RS04580 PF03033 Glycosyltransferase family 28 N-terminal domain LIN98_RS04580 PF04101 Glycosyltransferase family 28 C-terminal domain LIN98_RS04585 PF02875 Mur ligase family, glutamate ligase domain LIN98_RS04585 PF01225 Mur ligase family, catalytic domain LIN98_RS04585 PF08245 Mur ligase middle domain LIN98_RS04590 PF07478 D-ala D-ala ligase C-terminus LIN98_RS04590 PF01820 D-ala D-ala ligase N-terminus LIN98_RS04595 PF08478 POTRA domain, FtsQ-type LIN98_RS04595 PF03799 Cell division protein FtsQ LIN98_RS04600 PF02491 SHS2 domain inserted in FTSA LIN98_RS04605 PF12327 FtsZ family, C-terminal domain LIN98_RS04605 PF00091 Tubulin/FtsZ family, GTPase domain LIN98_RS04610 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LIN98_RS04615 PF01817 Chorismate mutase type II LIN98_RS04615 PF00800 Prephenate dehydratase LIN98_RS04620 PF00183 Hsp90 protein LIN98_RS04620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIN98_RS04625 PF03960 ArsC family LIN98_RS04630 PF01546 Peptidase family M20/M25/M40 LIN98_RS04630 PF07687 Peptidase dimerisation domain LIN98_RS04635 PF02557 D-alanyl-D-alanine carboxypeptidase LIN98_RS04640 PF00293 NUDIX domain LIN98_RS04645 PF00149 Calcineurin-like phosphoesterase LIN98_RS04670 PF06508 Queuosine biosynthesis protein QueC LIN98_RS04675 PF13635 Domain of unknown function (DUF4143) LIN98_RS04675 PF13173 AAA domain LIN98_RS04680 PF08240 Alcohol dehydrogenase GroES-like domain LIN98_RS04680 PF00107 Zinc-binding dehydrogenase LIN98_RS04685 PF10672 S-adenosylmethionine-dependent methyltransferase LIN98_RS04685 PF02926 THUMP domain LIN98_RS04685 PF01170 Putative RNA methylase family UPF0020 LIN98_RS04690 PF02313 Fumarate reductase subunit D LIN98_RS04695 PF02300 Fumarate reductase subunit C LIN98_RS04700 PF13085 2Fe-2S iron-sulfur cluster binding domain LIN98_RS04700 PF13183 4Fe-4S dicluster domain LIN98_RS04705 PF00890 FAD binding domain LIN98_RS04705 PF02910 Fumarate reductase flavoprotein C-term LIN98_RS04710 PF00152 tRNA synthetases class II (D, K and N) LIN98_RS04715 PF00005 ABC transporter LIN98_RS04720 PF01032 FecCD transport family LIN98_RS04725 PF01032 FecCD transport family LIN98_RS04730 PF01497 Periplasmic binding protein LIN98_RS04735 PF00149 Calcineurin-like phosphoesterase LIN98_RS04740 PF02575 YbaB/EbfC DNA-binding family LIN98_RS04745 PF13662 Toprim domain LIN98_RS04745 PF02132 RecR protein LIN98_RS04750 PF01131 DNA topoisomerase LIN98_RS04750 PF01751 Toprim domain LIN98_RS04755 PF03840 Preprotein translocase SecG subunit LIN98_RS04770 PF00912 Transglycosylase LIN98_RS04775 PF01371 Trp repressor protein LIN98_RS04780 PF01464 Transglycosylase SLT domain LIN98_RS04780 PF14718 Soluble lytic murein transglycosylase L domain LIN98_RS04785 PF03795 YCII-related domain LIN98_RS04790 PF03061 Thioesterase superfamily LIN98_RS04795 PF04279 Intracellular septation protein A LIN98_RS04805 PF03922 OmpW family LIN98_RS04810 PF02463 RecF/RecN/SMC N terminal domain LIN98_RS04815 PF01513 ATP-NAD kinase LIN98_RS04820 PF01025 GrpE LIN98_RS04825 PF07715 TonB-dependent Receptor Plug Domain LIN98_RS04825 PF00593 TonB dependent receptor LIN98_RS04825 PF04886 PT repeat LIN98_RS04830 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LIN98_RS04830 PF01266 FAD dependent oxidoreductase LIN98_RS04835 PF02801 Beta-ketoacyl synthase, C-terminal domain LIN98_RS04835 PF00109 Beta-ketoacyl synthase, N-terminal domain LIN98_RS04840 PF00072 Response regulator receiver domain LIN98_RS04840 PF00989 PAS fold LIN98_RS04840 PF01627 Hpt domain LIN98_RS04840 PF18415 Histidine kinase receptor ArcB trans-membrane domain LIN98_RS04840 PF00512 His Kinase A (phospho-acceptor) domain LIN98_RS04840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIN98_RS04845 PF02653 Branched-chain amino acid transport system / permease component LIN98_RS04855 PF13407 Periplasmic binding protein domain LIN98_RS04860 PF00356 Bacterial regulatory proteins, lacI family LIN98_RS04865 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LIN98_RS04865 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LIN98_RS04870 PF08544 GHMP kinases C terminal LIN98_RS04870 PF00288 GHMP kinases N terminal domain LIN98_RS04870 PF10509 Galactokinase galactose-binding signature LIN98_RS04875 PF01263 Aldose 1-epimerase LIN98_RS04895 PF00939 Sodium:sulfate symporter transmembrane region LIN98_RS04900 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LIN98_RS04900 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase LIN98_RS04905 PF04223 Citrate lyase, alpha subunit (CitF) LIN98_RS04910 PF03328 HpcH/HpaI aldolase/citrate lyase family LIN98_RS04915 PF06857 Malonate decarboxylase delta subunit (MdcD) LIN98_RS04920 PF08218 Citrate lyase ligase C-terminal domain LIN98_RS04925 PF03471 Transporter associated domain LIN98_RS04925 PF00571 CBS domain LIN98_RS04930 PF00795 Carbon-nitrogen hydrolase LIN98_RS04935 PF01176 Translation initiation factor 1A / IF-1 LIN98_RS04940 PF12404 Peptidase LIN98_RS04940 PF00883 Cytosol aminopeptidase family, catalytic domain LIN98_RS04945 PF00334 Nucleoside diphosphate kinase LIN98_RS04950 PF02838 Glycosyl hydrolase family 20, domain 2 LIN98_RS04950 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LIN98_RS04950 PF00728 Glycosyl hydrolase family 20, catalytic domain LIN98_RS04950 PF03173 Putative carbohydrate binding domain LIN98_RS04955 PF10609 NUBPL iron-transfer P-loop NTPase LIN98_RS04960 PF01588 Putative tRNA binding domain LIN98_RS04960 PF09334 tRNA synthetases class I (M) LIN98_RS04965 PF04384 Iron-sulphur cluster assembly LIN98_RS04970 PF00111 2Fe-2S iron-sulfur cluster binding domain LIN98_RS04975 PF00012 Hsp70 protein LIN98_RS04980 PF07743 HSCB C-terminal oligomerisation domain LIN98_RS04985 PF01521 Iron-sulphur cluster biosynthesis LIN98_RS04990 PF01592 NifU-like N terminal domain LIN98_RS04995 PF00266 Aminotransferase class-V LIN98_RS05000 PF02082 Transcriptional regulator LIN98_RS05005 PF00588 SpoU rRNA Methylase family LIN98_RS05010 PF00459 Inositol monophosphatase family LIN98_RS05020 PF08402 TOBE domain LIN98_RS05020 PF00005 ABC transporter LIN98_RS05025 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS05040 PF00485 Phosphoribulokinase / Uridine kinase family LIN98_RS05045 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) LIN98_RS05055 PF07690 Major Facilitator Superfamily LIN98_RS05060 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LIN98_RS05060 PF01926 50S ribosome-binding GTPase LIN98_RS05065 PF00226 DnaJ domain LIN98_RS05065 PF01556 DnaJ C terminal domain LIN98_RS05075 PF00709 Adenylosuccinate synthetase LIN98_RS05080 PF08003 Protein of unknown function (DUF1698) LIN98_RS05085 PF00474 Sodium:solute symporter family LIN98_RS05090 PF00575 S1 RNA binding domain LIN98_RS05090 PF10150 Ribonuclease E/G family LIN98_RS05095 PF04399 Glutaredoxin 2, C terminal domain LIN98_RS05095 PF13417 Glutathione S-transferase, N-terminal domain LIN98_RS05100 PF02146 Sir2 family LIN98_RS05135 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LIN98_RS05145 PF03498 Cytolethal distending toxin A/C domain LIN98_RS05150 PF03372 Endonuclease/Exonuclease/phosphatase family LIN98_RS05185 PF01066 CDP-alcohol phosphatidyltransferase LIN98_RS05190 PF01053 Cys/Met metabolism PLP-dependent enzyme LIN98_RS05195 PF13609 Gram-negative porin LIN98_RS05205 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LIN98_RS05210 PF01556 DnaJ C terminal domain LIN98_RS05210 PF00684 DnaJ central domain LIN98_RS05210 PF00226 DnaJ domain LIN98_RS05215 PF00012 Hsp70 protein LIN98_RS05220 PF06097 Bacterial protein of unknown function (DUF945) LIN98_RS05225 PF00750 tRNA synthetases class I (R) LIN98_RS05225 PF05746 DALR anticodon binding domain LIN98_RS05225 PF03485 Arginyl tRNA synthetase N terminal domain LIN98_RS05230 PF06185 YecM protein LIN98_RS05235 PF05433 Glycine zipper 2TM domain LIN98_RS05240 PF03462 PCRF domain LIN98_RS05240 PF00472 RF-1 domain LIN98_RS05245 PF17827 PrmC N-terminal domain LIN98_RS05245 PF13847 Methyltransferase domain LIN98_RS05250 PF00793 DAHP synthetase I family LIN98_RS05255 PF00877 NlpC/P60 family LIN98_RS05260 PF05166 YcgL domain LIN98_RS05265 PF05209 Septum formation inhibitor MinC, N-terminal domain LIN98_RS05265 PF03775 Septum formation inhibitor MinC, C-terminal domain LIN98_RS05275 PF00300 Histidine phosphatase superfamily (branch 1) LIN98_RS05280 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIN98_RS05280 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIN98_RS05280 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIN98_RS05280 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIN98_RS05285 PF00809 Pterin binding enzyme LIN98_RS05290 PF00817 impB/mucB/samB family LIN98_RS05290 PF11798 IMS family HHH motif LIN98_RS05325 PF00478 IMP dehydrogenase / GMP reductase domain LIN98_RS05325 PF00571 CBS domain LIN98_RS05330 PF02237 Biotin protein ligase C terminal domain LIN98_RS05330 PF03099 Biotin/lipoate A/B protein ligase family LIN98_RS05375 PF13333 Integrase core domain LIN98_RS05375 PF00665 Integrase core domain LIN98_RS05375 PF13276 HTH-like domain LIN98_RS05380 PF01195 Peptidyl-tRNA hydrolase LIN98_RS05385 PF01926 50S ribosome-binding GTPase LIN98_RS05385 PF06071 Protein of unknown function (DUF933) LIN98_RS05390 PF03167 Uracil DNA glycosylase superfamily LIN98_RS05395 PF00291 Pyridoxal-phosphate dependent enzyme LIN98_RS05405 PF04354 ZipA, C-terminal FtsZ-binding domain LIN98_RS05410 PF00533 BRCA1 C Terminus (BRCT) domain LIN98_RS05410 PF01653 NAD-dependent DNA ligase adenylation domain LIN98_RS05410 PF03120 NAD-dependent DNA ligase OB-fold domain LIN98_RS05410 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LIN98_RS05410 PF12826 Helix-hairpin-helix motif LIN98_RS05415 PF00265 Thymidine kinase LIN98_RS05425 PF00814 Glycoprotease family LIN98_RS05430 PF01165 Ribosomal protein S21 LIN98_RS05435 PF10410 DnaB-helicase binding domain of primase LIN98_RS05435 PF08275 DNA primase catalytic core, N-terminal domain LIN98_RS05435 PF01807 CHC2 zinc finger LIN98_RS05435 PF08278 DNA primase DnaG DnaB-binding LIN98_RS05440 PF04546 Sigma-70, non-essential region LIN98_RS05440 PF03979 Sigma-70 factor, region 1.1 LIN98_RS05440 PF00140 Sigma-70 factor, region 1.2 LIN98_RS05440 PF04542 Sigma-70 region 2 LIN98_RS05440 PF04539 Sigma-70 region 3 LIN98_RS05440 PF04545 Sigma-70, region 4 LIN98_RS05445 PF00004 ATPase family associated with various cellular activities (AAA) LIN98_RS05445 PF05362 Lon protease (S16) C-terminal proteolytic domain LIN98_RS05445 PF02190 ATP-dependent protease La (LON) substrate-binding domain LIN98_RS05455 PF00916 Sulfate permease family LIN98_RS05455 PF01740 STAS domain LIN98_RS05470 PF03786 D-mannonate dehydratase (UxuA) LIN98_RS05475 PF07729 FCD domain LIN98_RS05475 PF00392 Bacterial regulatory proteins, gntR family LIN98_RS05480 PF01055 Glycosyl hydrolases family 31 LIN98_RS05480 PF13802 Galactose mutarotase-like LIN98_RS05480 PF17137 Domain of unknown function (DUF5110) LIN98_RS05480 PF16338 Domain of unknown function (DUF4968) LIN98_RS05490 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LIN98_RS05495 PF03480 Bacterial extracellular solute-binding protein, family 7 LIN98_RS05500 PF00294 pfkB family carbohydrate kinase LIN98_RS05505 PF00106 short chain dehydrogenase LIN98_RS05510 PF02614 Glucuronate isomerase LIN98_RS05515 PF01081 KDPG and KHG aldolase LIN98_RS05520 PF01497 Periplasmic binding protein LIN98_RS05525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIN98_RS05525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIN98_RS05530 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LIN98_RS05535 PF06969 HemN C-terminal domain LIN98_RS05535 PF04055 Radical SAM superfamily LIN98_RS05540 PF01906 Putative heavy-metal-binding LIN98_RS05545 PF01725 Ham1 family LIN98_RS05555 PF01145 SPFH domain / Band 7 family LIN98_RS05560 PF01145 SPFH domain / Band 7 family LIN98_RS05565 PF01648 4'-phosphopantetheinyl transferase superfamily LIN98_RS05570 PF14821 Threonine synthase N terminus LIN98_RS05570 PF00291 Pyridoxal-phosphate dependent enzyme LIN98_RS05580 PF00288 GHMP kinases N terminal domain LIN98_RS05580 PF08544 GHMP kinases C terminal LIN98_RS05585 PF00742 Homoserine dehydrogenase LIN98_RS05585 PF03447 Homoserine dehydrogenase, NAD binding domain LIN98_RS05585 PF01842 ACT domain LIN98_RS05585 PF00696 Amino acid kinase family LIN98_RS05585 PF13840 ACT domain LIN98_RS05595 PF01168 Alanine racemase, N-terminal domain LIN98_RS05600 PF00571 CBS domain LIN98_RS05600 PF00005 ABC transporter LIN98_RS05605 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS05615 PF00701 Dihydrodipicolinate synthetase family LIN98_RS05620 PF00578 AhpC/TSA family LIN98_RS05625 PF03797 Autotransporter beta-domain LIN98_RS05625 PF02395 Immunoglobulin A1 protease LIN98_RS05625 PF03212 Pertactin LIN98_RS05630 PF00679 Elongation factor G C-terminus LIN98_RS05630 PF00009 Elongation factor Tu GTP binding domain LIN98_RS05630 PF03144 Elongation factor Tu domain 2 LIN98_RS05635 PF03951 Glutamine synthetase, beta-Grasp domain LIN98_RS05635 PF00120 Glutamine synthetase, catalytic domain LIN98_RS05640 PF13333 Integrase core domain LIN98_RS05640 PF00665 Integrase core domain LIN98_RS05640 PF13276 HTH-like domain LIN98_RS05650 PF03741 Integral membrane protein TerC family LIN98_RS05655 PF02976 DNA mismatch repair enzyme MutH LIN98_RS05660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LIN98_RS05660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LIN98_RS05665 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LIN98_RS05670 PF04175 Protein of unknown function (DUF406) LIN98_RS05680 PF00535 Glycosyl transferase family 2 LIN98_RS05685 PF03412 Peptidase C39 family LIN98_RS05685 PF00005 ABC transporter LIN98_RS05685 PF00664 ABC transporter transmembrane region LIN98_RS05695 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LIN98_RS05700 PF01722 BolA-like protein LIN98_RS05705 PF13466 STAS domain LIN98_RS05710 PF05494 MlaC protein LIN98_RS05715 PF02470 MlaD protein LIN98_RS05720 PF02405 Permease MlaE LIN98_RS05725 PF00005 ABC transporter LIN98_RS05730 PF06835 Lipopolysaccharide-assembly, LptC-related LIN98_RS05735 PF03968 OstA-like protein LIN98_RS05740 PF12399 Branched-chain amino acid ATP-binding cassette transporter LIN98_RS05740 PF00005 ABC transporter LIN98_RS05745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LIN98_RS05750 PF03668 P-loop ATPase protein family LIN98_RS05755 PF02601 Exonuclease VII, large subunit LIN98_RS05755 PF13742 OB-fold nucleic acid binding domain LIN98_RS05760 PF08007 Cupin superfamily protein LIN98_RS05765 PF03658 RnfH family Ubiquitin LIN98_RS05770 PF03364 Polyketide cyclase / dehydrase and lipid transport LIN98_RS05775 PF00892 EamA-like transporter family LIN98_RS05780 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LIN98_RS05780 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LIN98_RS05785 PF00625 Guanylate kinase LIN98_RS05790 PF01192 RNA polymerase Rpb6 LIN98_RS05795 PF13291 ACT domain LIN98_RS05795 PF02824 TGS domain LIN98_RS05795 PF04607 Region found in RelA / SpoT proteins LIN98_RS05800 PF00270 DEAD/DEAH box helicase LIN98_RS05800 PF00271 Helicase conserved C-terminal domain LIN98_RS05800 PF17191 RecG wedge domain LIN98_RS05805 PF04345 Chorismate lyase LIN98_RS05810 PF01177 Asp/Glu/Hydantoin racemase LIN98_RS05835 PF03553 Na+/H+ antiporter family LIN98_RS05840 PF00816 H-NS histone family LIN98_RS05845 PF01842 ACT domain LIN98_RS05845 PF00551 Formyl transferase LIN98_RS05850 PF01728 FtsJ-like methyltransferase LIN98_RS05855 PF00004 ATPase family associated with various cellular activities (AAA) LIN98_RS05855 PF17862 AAA+ lid domain LIN98_RS05855 PF06480 FtsH Extracellular LIN98_RS05855 PF01434 Peptidase family M41 LIN98_RS05890 PF00512 His Kinase A (phospho-acceptor) domain LIN98_RS05890 PF00672 HAMP domain LIN98_RS05890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIN98_RS05905 PF14489 QueF-like protein LIN98_RS05905 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LIN98_RS05910 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LIN98_RS05915 PF04287 tRNA pseudouridine synthase C LIN98_RS05920 PF00849 RNA pseudouridylate synthase LIN98_RS05925 PF03701 Uncharacterised protein family (UPF0181) LIN98_RS05930 PF00313 'Cold-shock' DNA-binding domain LIN98_RS05935 PF06303 MatP N-terminal domain LIN98_RS05935 PF17414 MatP C-terminal ribbon-helix-helix domain LIN98_RS05940 PF13654 AAA domain LIN98_RS05940 PF05362 Lon protease (S16) C-terminal proteolytic domain LIN98_RS05945 PF07977 FabA-like domain LIN98_RS05955 PF02635 DsrE/DsrF-like family LIN98_RS05960 PF00580 UvrD/REP helicase N-terminal domain LIN98_RS05960 PF13361 UvrD-like helicase C-terminal domain LIN98_RS05960 PF12705 PD-(D/E)XK nuclease superfamily LIN98_RS05965 PF13538 UvrD-like helicase C-terminal domain LIN98_RS05975 PF00572 Ribosomal protein L13 LIN98_RS05980 PF00380 Ribosomal protein S9/S16 LIN98_RS05985 PF01416 tRNA pseudouridine synthase LIN98_RS06000 PF00939 Sodium:sulfate symporter transmembrane region LIN98_RS06005 PF04237 YjbR LIN98_RS06010 PF01568 Molydopterin dinucleotide binding domain LIN98_RS06010 PF18364 Molybdopterin oxidoreductase N-terminal domain LIN98_RS06010 PF00384 Molybdopterin oxidoreductase LIN98_RS06015 PF03264 NapC/NirT cytochrome c family, N-terminal region LIN98_RS06020 PF02926 THUMP domain LIN98_RS06020 PF02568 Thiamine biosynthesis protein (ThiI) LIN98_RS06025 PF03575 Peptidase family S51 LIN98_RS06035 PF01933 Uncharacterised protein family UPF0052 LIN98_RS06040 PF04055 Radical SAM superfamily LIN98_RS06040 PF06463 Molybdenum Cofactor Synthesis C LIN98_RS06045 PF01967 MoaC family LIN98_RS06050 PF02597 ThiS family LIN98_RS06055 PF02391 MoaE protein LIN98_RS06060 PF13417 Glutathione S-transferase, N-terminal domain LIN98_RS06060 PF00043 Glutathione S-transferase, C-terminal domain LIN98_RS06065 PF04386 Stringent starvation protein B LIN98_RS06070 PF00152 tRNA synthetases class II (D, K and N) LIN98_RS06070 PF01336 OB-fold nucleic acid binding domain LIN98_RS06075 PF00480 ROK family LIN98_RS06085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIN98_RS06085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIN98_RS06090 PF04198 Putative sugar-binding domain LIN98_RS06090 PF00325 Bacterial regulatory proteins, crp family LIN98_RS06100 PF02653 Branched-chain amino acid transport system / permease component LIN98_RS06110 PF13407 Periplasmic binding protein domain LIN98_RS06115 PF01791 DeoC/LacD family aldolase LIN98_RS06155 PF03524 Conjugal transfer protein LIN98_RS06160 PF03743 Bacterial conjugation TrbI-like protein LIN98_RS06165 PF00437 Type II/IV secretion system protein LIN98_RS06170 PF02534 Type IV secretory system Conjugative DNA transfer LIN98_RS06180 PF03992 Antibiotic biosynthesis monooxygenase LIN98_RS06185 PF02887 Pyruvate kinase, alpha/beta domain LIN98_RS06185 PF00224 Pyruvate kinase, barrel domain LIN98_RS06195 PF00317 Ribonucleotide reductase, all-alpha domain LIN98_RS06195 PF02867 Ribonucleotide reductase, barrel domain LIN98_RS06195 PF03477 ATP cone domain LIN98_RS06200 PF00290 Tryptophan synthase alpha chain LIN98_RS06205 PF00291 Pyridoxal-phosphate dependent enzyme LIN98_RS06210 PF00106 short chain dehydrogenase LIN98_RS06220 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LIN98_RS06225 PF00364 Biotin-requiring enzyme LIN98_RS06225 PF02436 Conserved carboxylase domain LIN98_RS06225 PF00682 HMGL-like LIN98_RS06230 PF04277 Oxaloacetate decarboxylase, gamma chain LIN98_RS06245 PF01455 HupF/HypC family LIN98_RS06250 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LIN98_RS06250 PF00218 Indole-3-glycerol phosphate synthase LIN98_RS06255 PF01381 Helix-turn-helix LIN98_RS06265 PF00591 Glycosyl transferase family, a/b domain LIN98_RS06265 PF02885 Glycosyl transferase family, helical bundle domain LIN98_RS06270 PF14552 Tautomerase enzyme LIN98_RS06275 PF00117 Glutamine amidotransferase class-I LIN98_RS06280 PF00425 chorismate binding enzyme LIN98_RS06280 PF04715 Anthranilate synthase component I, N terminal region LIN98_RS06290 PF01380 SIS domain LIN98_RS06290 PF00571 CBS domain LIN98_RS06300 PF01435 Peptidase family M48 LIN98_RS06305 PF01409 tRNA synthetases class II core domain (F) LIN98_RS06305 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LIN98_RS06310 PF03484 tRNA synthetase B5 domain LIN98_RS06310 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LIN98_RS06310 PF01588 Putative tRNA binding domain LIN98_RS06310 PF03147 Ferredoxin-fold anticodon binding domain LIN98_RS06310 PF03483 B3/4 domain LIN98_RS06315 PF00216 Bacterial DNA-binding protein LIN98_RS06320 PF00877 NlpC/P60 family LIN98_RS06325 PF01171 PP-loop family LIN98_RS06335 PF00593 TonB dependent receptor LIN98_RS06345 PF01497 Periplasmic binding protein LIN98_RS06350 PF01032 FecCD transport family LIN98_RS06355 PF00005 ABC transporter LIN98_RS06360 PF00593 TonB dependent receptor LIN98_RS06360 PF07715 TonB-dependent Receptor Plug Domain LIN98_RS06365 PF00593 TonB dependent receptor LIN98_RS06365 PF07715 TonB-dependent Receptor Plug Domain LIN98_RS06370 PF03459 TOBE domain LIN98_RS06375 PF01497 Periplasmic binding protein LIN98_RS06380 PF00005 ABC transporter LIN98_RS06385 PF01032 FecCD transport family LIN98_RS06400 PF00005 ABC transporter LIN98_RS06405 PF13533 Biotin-lipoyl like LIN98_RS06415 PF00155 Aminotransferase class I and II LIN98_RS06420 PF11940 Domain of unknown function (DUF3458) Ig-like fold LIN98_RS06420 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LIN98_RS06420 PF01433 Peptidase family M1 domain LIN98_RS06425 PF01180 Dihydroorotate dehydrogenase LIN98_RS06430 PF02811 PHP domain LIN98_RS06435 PF01396 Topoisomerase DNA binding C4 zinc finger LIN98_RS06435 PF01751 Toprim domain LIN98_RS06435 PF01131 DNA topoisomerase LIN98_RS06435 PF08272 Topoisomerase I zinc-ribbon-like LIN98_RS06440 PF10670 Domain of unknown function (DUF4198) LIN98_RS06445 PF00582 Universal stress protein family LIN98_RS06450 PF13545 Crp-like helix-turn-helix domain LIN98_RS06450 PF00027 Cyclic nucleotide-binding domain LIN98_RS06460 PF00210 Ferritin-like domain LIN98_RS06465 PF00210 Ferritin-like domain LIN98_RS06475 PF13333 Integrase core domain LIN98_RS06475 PF00665 Integrase core domain LIN98_RS06475 PF13276 HTH-like domain LIN98_RS06485 PF00929 Exonuclease LIN98_RS06485 PF08411 Exonuclease C-terminal LIN98_RS06495 PF16330 MukB hinge domain LIN98_RS06495 PF04310 MukB N-terminal LIN98_RS06500 PF04288 MukE-like family LIN98_RS06505 PF00501 AMP-binding enzyme LIN98_RS06505 PF01553 Acyltransferase LIN98_RS06505 PF13193 AMP-binding enzyme C-terminal domain LIN98_RS06515 PF17192 MukF middle domain LIN98_RS06515 PF17193 MukF C-terminal domain LIN98_RS06515 PF03882 MukF winged-helix domain LIN98_RS06520 PF00768 D-alanyl-D-alanine carboxypeptidase LIN98_RS06530 PF01386 Ribosomal L25p family LIN98_RS06535 PF09335 SNARE associated Golgi protein LIN98_RS06540 PF00343 Carbohydrate phosphorylase LIN98_RS06545 PF08323 Starch synthase catalytic domain LIN98_RS06545 PF00534 Glycosyl transferases group 1 LIN98_RS06550 PF00483 Nucleotidyl transferase LIN98_RS06555 PF18390 Glycogen debranching enzyme C-terminal domain LIN98_RS06555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LIN98_RS06555 PF00128 Alpha amylase, catalytic domain LIN98_RS06560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LIN98_RS06560 PF00128 Alpha amylase, catalytic domain LIN98_RS06560 PF02806 Alpha amylase, C-terminal all-beta domain LIN98_RS06575 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LIN98_RS06575 PF00749 tRNA synthetases class I (E and Q), catalytic domain LIN98_RS06580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LIN98_RS06585 PF12704 MacB-like periplasmic core domain LIN98_RS06585 PF02687 FtsX-like permease family LIN98_RS06585 PF00005 ABC transporter LIN98_RS06590 PF02321 Outer membrane efflux protein LIN98_RS06615 PF03831 PhnA domain LIN98_RS06615 PF08274 PhnA Zinc-Ribbon LIN98_RS06625 PF00849 RNA pseudouridylate synthase LIN98_RS06630 PF03956 Lysine exporter LysO LIN98_RS06635 PF13396 Phospholipase_D-nuclease N-terminal LIN98_RS06635 PF13091 PLD-like domain LIN98_RS06640 PF00300 Histidine phosphatase superfamily (branch 1) LIN98_RS06645 PF08245 Mur ligase middle domain LIN98_RS06650 PF01039 Carboxyl transferase domain LIN98_RS06650 PF17848 Acetyl-coA carboxylase zinc finger domain LIN98_RS06655 PF02609 Exonuclease VII small subunit LIN98_RS06660 PF00348 Polyprenyl synthetase LIN98_RS06665 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LIN98_RS06665 PF02779 Transketolase, pyrimidine binding domain LIN98_RS06665 PF02780 Transketolase, C-terminal domain LIN98_RS06670 PF00455 DeoR C terminal sensor domain LIN98_RS06670 PF08220 DeoR-like helix-turn-helix domain LIN98_RS06675 PF00107 Zinc-binding dehydrogenase LIN98_RS06675 PF08240 Alcohol dehydrogenase GroES-like domain LIN98_RS06680 PF03611 PTS system sugar-specific permease component LIN98_RS06690 PF01791 DeoC/LacD family aldolase LIN98_RS06705 PF00453 Ribosomal protein L20 LIN98_RS06710 PF01632 Ribosomal protein L35 LIN98_RS06715 PF05198 Translation initiation factor IF-3, N-terminal domain LIN98_RS06715 PF00707 Translation initiation factor IF-3, C-terminal domain LIN98_RS06720 PF00175 Oxidoreductase NAD-binding domain LIN98_RS06720 PF00970 Oxidoreductase FAD-binding domain LIN98_RS06725 PF01555 DNA methylase LIN98_RS06725 PF18273 Type III R-M EcoP15I C-terminal domain LIN98_RS06730 PF01555 DNA methylase LIN98_RS06730 PF18273 Type III R-M EcoP15I C-terminal domain LIN98_RS06735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIN98_RS06735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIN98_RS06735 PF02824 TGS domain LIN98_RS06735 PF03129 Anticodon binding domain LIN98_RS06740 PF03881 Fructosamine kinase LIN98_RS06745 PF05736 OprF membrane domain LIN98_RS06745 PF00691 OmpA family LIN98_RS06750 PF01343 Peptidase family S49 LIN98_RS06750 PF08496 Peptidase family S49 N-terminal LIN98_RS06755 PF02525 Flavodoxin-like fold LIN98_RS06760 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIN98_RS06765 PF01266 FAD dependent oxidoreductase LIN98_RS06765 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LIN98_RS06770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIN98_RS06775 PF04348 LppC putative lipoprotein LIN98_RS06785 PF13580 SIS domain LIN98_RS06790 PF04972 BON domain LIN98_RS06795 PF00484 Carbonic anhydrase LIN98_RS06800 PF01625 Peptide methionine sulfoxide reductase LIN98_RS06800 PF01641 SelR domain LIN98_RS06805 PF02683 Cytochrome C biogenesis protein transmembrane region LIN98_RS06810 PF08534 Redoxin LIN98_RS06825 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LIN98_RS06825 PF00356 Bacterial regulatory proteins, lacI family LIN98_RS06830 PF02698 DUF218 domain LIN98_RS06835 PF00561 alpha/beta hydrolase fold LIN98_RS06840 PF00356 Bacterial regulatory proteins, lacI family LIN98_RS06845 PF04269 Protein of unknown function, DUF440 LIN98_RS06850 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LIN98_RS06850 PF14602 Hexapeptide repeat of succinyl-transferase LIN98_RS06850 PF00132 Bacterial transferase hexapeptide (six repeats) LIN98_RS06855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIN98_RS06855 PF03466 LysR substrate binding domain LIN98_RS06860 PF00849 RNA pseudouridylate synthase LIN98_RS06860 PF01479 S4 domain LIN98_RS06865 PF01300 Telomere recombination LIN98_RS06875 PF01343 Peptidase family S49 LIN98_RS06880 PF00881 Nitroreductase family LIN98_RS06885 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIN98_RS06885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIN98_RS06890 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIN98_RS06890 PF02817 e3 binding domain LIN98_RS06890 PF00364 Biotin-requiring enzyme LIN98_RS06895 PF00456 Transketolase, thiamine diphosphate binding domain LIN98_RS06895 PF17831 Pyruvate dehydrogenase E1 component middle domain LIN98_RS06900 PF03848 Tellurite resistance protein TehB LIN98_RS06900 PF09313 Domain of unknown function (DUF1971) LIN98_RS06905 PF17874 MalT-like TPR region LIN98_RS06905 PF00196 Bacterial regulatory proteins, luxR family LIN98_RS06910 PF00343 Carbohydrate phosphorylase LIN98_RS06915 PF02446 4-alpha-glucanotransferase LIN98_RS06920 PF02674 Colicin V production protein LIN98_RS06925 PF04217 Protein of unknown function, DUF412 LIN98_RS06930 PF00871 Acetokinase family LIN98_RS06935 PF01515 Phosphate acetyl/butaryl transferase LIN98_RS06935 PF07085 DRTGG domain LIN98_RS06945 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LIN98_RS06950 PF12627 Probable RNA and SrmB- binding site of polymerase A LIN98_RS06950 PF12626 Polymerase A arginine-rich C-terminus LIN98_RS06950 PF01743 Poly A polymerase head domain LIN98_RS06955 PF01258 Prokaryotic dksA/traR C4-type zinc finger LIN98_RS06960 PF00753 Metallo-beta-lactamase superfamily LIN98_RS06960 PF03772 Competence protein LIN98_RS06960 PF13567 Domain of unknown function (DUF4131) LIN98_RS06965 PF00005 ABC transporter LIN98_RS06965 PF00664 ABC transporter transmembrane region LIN98_RS06970 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LIN98_RS06975 PF03966 Trm112p-like protein LIN98_RS06980 PF02348 Cytidylyltransferase LIN98_RS06985 PF08459 UvrC Helix-hairpin-helix N-terminal LIN98_RS06985 PF02151 UvrB/uvrC motif LIN98_RS06985 PF01541 GIY-YIG catalytic domain LIN98_RS06995 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS07000 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS07010 PF00586 AIR synthase related protein, N-terminal domain LIN98_RS07010 PF02769 AIR synthase related protein, C-terminal domain LIN98_RS07015 PF02661 Fic/DOC family LIN98_RS07015 PF12728 Helix-turn-helix domain LIN98_RS07025 PF02233 NAD(P) transhydrogenase beta subunit LIN98_RS07030 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LIN98_RS07030 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LIN98_RS07030 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LIN98_RS07035 PF03749 Sugar fermentation stimulation protein RE domain LIN98_RS07035 PF17746 SfsA N-terminal OB domain LIN98_RS07040 PF00579 tRNA synthetases class I (W and Y) LIN98_RS07040 PF01479 S4 domain LIN98_RS07050 PF09157 Pseudouridine synthase II TruB, C-terminal LIN98_RS07050 PF16198 tRNA pseudouridylate synthase B C-terminal domain LIN98_RS07050 PF01509 TruB family pseudouridylate synthase (N terminal domain) LIN98_RS07055 PF02033 Ribosome-binding factor A LIN98_RS07070 PF18273 Type III R-M EcoP15I C-terminal domain LIN98_RS07070 PF01555 DNA methylase LIN98_RS07075 PF08364 Bacterial translation initiation factor IF-2 associated region LIN98_RS07075 PF04760 Translation initiation factor IF-2, N-terminal region LIN98_RS07075 PF11987 Translation-initiation factor 2 LIN98_RS07075 PF00009 Elongation factor Tu GTP binding domain LIN98_RS07080 PF00575 S1 RNA binding domain LIN98_RS07080 PF08529 NusA N-terminal domain LIN98_RS07080 PF13184 NusA-like KH domain LIN98_RS07085 PF02576 RimP N-terminal domain LIN98_RS07085 PF17384 RimP C-terminal SH3 domain LIN98_RS07095 PF03606 C4-dicarboxylate anaerobic carrier LIN98_RS07100 PF04221 RelB antitoxin LIN98_RS07105 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ LIN98_RS07110 PF02540 NAD synthase LIN98_RS07110 PF00958 GMP synthase C terminal domain LIN98_RS07110 PF00117 Glutamine amidotransferase class-I LIN98_RS07115 PF00589 Phage integrase family LIN98_RS07125 PF03406 Phage tail fibre repeat LIN98_RS07185 PF00576 HIUase/Transthyretin family LIN98_RS07190 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LIN98_RS07195 PF08543 Phosphomethylpyrimidine kinase LIN98_RS07200 PF01171 PP-loop family LIN98_RS07200 PF09179 TilS substrate binding domain LIN98_RS07200 PF11734 TilS substrate C-terminal domain LIN98_RS07205 PF00860 Permease family LIN98_RS07210 PF05656 Protein of unknown function (DUF805) LIN98_RS07215 PF01370 NAD dependent epimerase/dehydratase family LIN98_RS07220 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LIN98_RS07225 PF07690 Major Facilitator Superfamily LIN98_RS07230 PF05191 Adenylate kinase, active site lid LIN98_RS07255 PF00480 ROK family LIN98_RS07255 PF01047 MarR family LIN98_RS07260 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LIN98_RS07260 PF01488 Shikimate / quinate 5-dehydrogenase LIN98_RS07260 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LIN98_RS07265 PF16123 Hydroxyacylglutathione hydrolase C-terminus LIN98_RS07265 PF00753 Metallo-beta-lactamase superfamily LIN98_RS07275 PF02378 Phosphotransferase system, EIIC LIN98_RS07275 PF00367 phosphotransferase system, EIIB LIN98_RS07275 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LIN98_RS07280 PF07411 Domain of unknown function (DUF1508) LIN98_RS07285 PF01238 Phosphomannose isomerase type I LIN98_RS07290 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LIN98_RS07290 PF18381 YcaO cyclodehydratase C-terminal domain LIN98_RS07295 PF06295 Protein of unknown function (DUF1043) LIN98_RS07300 PF00595 PDZ domain LIN98_RS07305 PF04055 Radical SAM superfamily LIN98_RS07305 PF06968 Biotin and Thiamin Synthesis associated domain LIN98_RS07310 PF00005 ABC transporter LIN98_RS07315 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS07330 PF09827 CRISPR associated protein Cas2 LIN98_RS07335 PF01867 CRISPR associated protein Cas1 LIN98_RS07340 PF02463 RecF/RecN/SMC N terminal domain LIN98_RS07365 PF08335 GlnD PII-uridylyltransferase LIN98_RS07365 PF03710 Glutamate-ammonia ligase adenylyltransferase LIN98_RS07375 PF05973 Phage derived protein Gp49-like (DUF891) LIN98_RS07380 PF16658 Class II release factor RF3, C-terminal domain LIN98_RS07380 PF00009 Elongation factor Tu GTP binding domain LIN98_RS07380 PF03144 Elongation factor Tu domain 2 LIN98_RS07385 PF01370 NAD dependent epimerase/dehydratase family LIN98_RS07390 PF00764 Arginosuccinate synthase LIN98_RS07395 PF10688 Bacterial inner membrane protein LIN98_RS07405 PF00512 His Kinase A (phospho-acceptor) domain LIN98_RS07405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIN98_RS07405 PF08521 Two-component sensor kinase N-terminal LIN98_RS07445 PF04076 Bacterial OB fold (BOF) protein LIN98_RS07450 PF04216 Protein involved in formate dehydrogenase formation LIN98_RS07455 PF00149 Calcineurin-like phosphoesterase LIN98_RS07455 PF02872 5'-nucleotidase, C-terminal domain LIN98_RS07460 PF01497 Periplasmic binding protein LIN98_RS07465 PF01032 FecCD transport family LIN98_RS07470 PF01032 FecCD transport family LIN98_RS07475 PF00005 ABC transporter LIN98_RS07480 PF04225 Opacity-associated protein A LysM-like domain LIN98_RS07480 PF01551 Peptidase family M23 LIN98_RS07485 PF00005 ABC transporter LIN98_RS07490 PF00950 ABC 3 transport family LIN98_RS07495 PF00209 Sodium:neurotransmitter symporter family LIN98_RS07500 PF00633 Helix-hairpin-helix motif LIN98_RS07500 PF10576 Iron-sulfur binding domain of endonuclease III LIN98_RS07500 PF00730 HhH-GPD superfamily base excision DNA repair protein LIN98_RS07505 PF02508 Rnf-Nqr subunit, membrane protein LIN98_RS07510 PF04205 FMN-binding domain LIN98_RS07515 PF03116 NQR2, RnfD, RnfE family LIN98_RS07520 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LIN98_RS07520 PF12838 4Fe-4S dicluster domain LIN98_RS07520 PF13375 RnfC Barrel sandwich hybrid domain LIN98_RS07525 PF04060 Putative Fe-S cluster LIN98_RS07530 PF02508 Rnf-Nqr subunit, membrane protein LIN98_RS07535 PF08338 Domain of unknown function (DUF1731) LIN98_RS07535 PF01370 NAD dependent epimerase/dehydratase family LIN98_RS07540 PF01316 Arginine repressor, DNA binding domain LIN98_RS07540 PF02863 Arginine repressor, C-terminal domain LIN98_RS07545 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LIN98_RS07545 PF00056 lactate/malate dehydrogenase, NAD binding domain LIN98_RS07555 PF01063 Amino-transferase class IV LIN98_RS07560 PF03466 LysR substrate binding domain LIN98_RS07560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIN98_RS07565 PF01728 FtsJ-like methyltransferase LIN98_RS07565 PF18125 RlmM ferredoxin-like domain LIN98_RS07570 PF03477 ATP cone domain LIN98_RS07575 PF01872 RibD C-terminal domain LIN98_RS07575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIN98_RS07580 PF13180 PDZ domain LIN98_RS07590 PF00939 Sodium:sulfate symporter transmembrane region LIN98_RS07595 PF03459 TOBE domain LIN98_RS07595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIN98_RS07605 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS07610 PF03459 TOBE domain LIN98_RS07610 PF00005 ABC transporter LIN98_RS07615 PF00883 Cytosol aminopeptidase family, catalytic domain LIN98_RS07615 PF02789 Cytosol aminopeptidase family, N-terminal domain LIN98_RS07620 PF03739 Lipopolysaccharide export system permease LptF/LptG LIN98_RS07625 PF03739 Lipopolysaccharide export system permease LptF/LptG LIN98_RS07630 PF02219 Methylenetetrahydrofolate reductase LIN98_RS07635 PF08501 Shikimate dehydrogenase substrate binding domain LIN98_RS07645 PF00586 AIR synthase related protein, N-terminal domain LIN98_RS07645 PF02769 AIR synthase related protein, C-terminal domain LIN98_RS07650 PF01924 Hydrogenase formation hypA family LIN98_RS07655 PF02492 CobW/HypB/UreG, nucleotide-binding domain LIN98_RS07670 PF01891 Cobalt uptake substrate-specific transmembrane region LIN98_RS07680 PF10670 Domain of unknown function (DUF4198) LIN98_RS07685 PF01048 Phosphorylase superfamily LIN98_RS07695 PF02272 DHHA1 domain LIN98_RS07695 PF01368 DHH family LIN98_RS07695 PF17768 RecJ OB domain LIN98_RS07700 PF10411 Disulfide bond isomerase protein N-terminus LIN98_RS07700 PF13098 Thioredoxin-like domain LIN98_RS07710 PF00152 tRNA synthetases class II (D, K and N) LIN98_RS07710 PF01336 OB-fold nucleic acid binding domain LIN98_RS07715 PF01242 6-pyruvoyl tetrahydropterin synthase LIN98_RS07720 PF04055 Radical SAM superfamily LIN98_RS07725 PF01784 NIF3 (NGG1p interacting factor 3) LIN98_RS07735 PF00773 RNB domain LIN98_RS07735 PF08206 Ribonuclease B OB domain LIN98_RS07735 PF00575 S1 RNA binding domain LIN98_RS07740 PF00210 Ferritin-like domain LIN98_RS07745 PF00529 HlyD membrane-fusion protein of T1SS LIN98_RS07745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LIN98_RS07750 PF07690 Major Facilitator Superfamily LIN98_RS07760 PF07804 HipA-like C-terminal domain LIN98_RS07760 PF13657 HipA N-terminal domain LIN98_RS07780 PF10458 Valyl tRNA synthetase tRNA binding arm LIN98_RS07780 PF00133 tRNA synthetases class I (I, L, M and V) LIN98_RS07780 PF08264 Anticodon-binding domain of tRNA LIN98_RS07795 PF04364 DNA polymerase III chi subunit, HolC LIN98_RS07800 PF00206 Lyase LIN98_RS07800 PF10415 Fumarase C C-terminus LIN98_RS07805 PF16036 Chalcone isomerase-like LIN98_RS07815 PF18030 RimK PreATP-grasp domain LIN98_RS07815 PF08443 RimK-like ATP-grasp domain LIN98_RS07820 PF00881 Nitroreductase family LIN98_RS07825 PF00462 Glutaredoxin LIN98_RS07830 PF02837 Glycosyl hydrolases family 2, sugar binding domain LIN98_RS07830 PF00703 Glycosyl hydrolases family 2 LIN98_RS07830 PF16353 Domain of unknown function(DUF4981) LIN98_RS07830 PF02929 Beta galactosidase small chain LIN98_RS07830 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LIN98_RS07835 PF03222 Tryptophan/tyrosine permease family LIN98_RS07840 PF00596 Class II Aldolase and Adducin N-terminal domain LIN98_RS07845 PF01261 Xylose isomerase-like TIM barrel LIN98_RS07850 PF08220 DeoR-like helix-turn-helix domain LIN98_RS07850 PF00455 DeoR C terminal sensor domain LIN98_RS07860 PF03611 PTS system sugar-specific permease component LIN98_RS07865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LIN98_RS07870 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LIN98_RS07875 PF00905 Penicillin binding protein transpeptidase domain LIN98_RS07875 PF00912 Transglycosylase LIN98_RS07875 PF06832 Penicillin-Binding Protein C-terminus Family LIN98_RS07880 PF03601 Conserved hypothetical protein 698 LIN98_RS07885 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LIN98_RS07885 PF00207 Alpha-2-macroglobulin family LIN98_RS07885 PF17962 Bacterial macroglobulin domain 6 LIN98_RS07885 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LIN98_RS07885 PF07703 Alpha-2-macroglobulin bait region domain LIN98_RS07885 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LIN98_RS07885 PF01835 MG2 domain LIN98_RS07890 PF01523 Putative modulator of DNA gyrase LIN98_RS07895 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LIN98_RS07895 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LIN98_RS07900 PF00005 ABC transporter LIN98_RS07905 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS07920 PF04073 Aminoacyl-tRNA editing domain LIN98_RS07925 PF01554 MatE LIN98_RS07930 PF00677 Lumazine binding domain LIN98_RS07935 PF01381 Helix-turn-helix LIN98_RS07940 PF05973 Phage derived protein Gp49-like (DUF891) LIN98_RS07945 PF01985 CRS1 / YhbY (CRM) domain LIN98_RS07950 PF03449 Transcription elongation factor, N-terminal LIN98_RS07950 PF01272 Transcription elongation factor, GreA/GreB, C-term LIN98_RS07955 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LIN98_RS07960 PF01227 GTP cyclohydrolase I LIN98_RS07965 PF00994 Probable molybdopterin binding domain LIN98_RS07965 PF03453 MoeA N-terminal region (domain I and II) LIN98_RS07965 PF03454 MoeA C-terminal region (domain IV) LIN98_RS07970 PF00899 ThiF family LIN98_RS07975 PF07148 Maltose operon periplasmic protein precursor (MalM) LIN98_RS07980 PF02264 LamB porin LIN98_RS07985 PF17912 MalK OB fold domain LIN98_RS07985 PF00005 ABC transporter LIN98_RS07990 PF01547 Bacterial extracellular solute-binding protein LIN98_RS07995 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS07995 PF14785 Maltose transport system permease protein MalF P2 domain LIN98_RS08000 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS08005 PF00128 Alpha amylase, catalytic domain LIN98_RS08010 PF00005 ABC transporter LIN98_RS08010 PF08402 TOBE domain LIN98_RS08015 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS08025 PF12008 Type I restriction and modification enzyme - subunit R C terminal LIN98_RS08025 PF18766 SWI2/SNF2 ATPase LIN98_RS08025 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LIN98_RS08030 PF00317 Ribonucleotide reductase, all-alpha domain LIN98_RS08030 PF02867 Ribonucleotide reductase, barrel domain LIN98_RS08030 PF03477 ATP cone domain LIN98_RS08045 PF00268 Ribonucleotide reductase, small chain LIN98_RS08055 PF00111 2Fe-2S iron-sulfur cluster binding domain LIN98_RS08060 PF01113 Dihydrodipicolinate reductase, N-terminus LIN98_RS08060 PF05173 Dihydrodipicolinate reductase, C-terminus LIN98_RS08065 PF01810 LysE type translocator LIN98_RS08070 PF04608 Phosphatidylglycerophosphatase A LIN98_RS08075 PF00586 AIR synthase related protein, N-terminal domain LIN98_RS08075 PF02769 AIR synthase related protein, C-terminal domain LIN98_RS08080 PF01029 NusB family LIN98_RS08085 PF00885 6,7-dimethyl-8-ribityllumazine synthase LIN98_RS08090 PF00342 Phosphoglucose isomerase LIN98_RS08095 PF01168 Alanine racemase, N-terminal domain LIN98_RS08095 PF00842 Alanine racemase, C-terminal domain LIN98_RS08100 PF00772 DnaB-like helicase N terminal domain LIN98_RS08100 PF03796 DnaB-like helicase C terminal domain LIN98_RS08105 PF00793 DAHP synthetase I family LIN98_RS08110 PF02687 FtsX-like permease family LIN98_RS08110 PF12704 MacB-like periplasmic core domain LIN98_RS08115 PF00005 ABC transporter LIN98_RS08120 PF12704 MacB-like periplasmic core domain LIN98_RS08120 PF02687 FtsX-like permease family LIN98_RS08125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIN98_RS08125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIN98_RS08130 PF00117 Glutamine amidotransferase class-I LIN98_RS08135 PF00425 chorismate binding enzyme LIN98_RS08140 PF01063 Amino-transferase class IV LIN98_RS08145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIN98_RS08150 PF04304 Protein of unknown function (DUF454) LIN98_RS08155 PF01432 Peptidase family M3 LIN98_RS08160 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LIN98_RS08165 PF05524 PEP-utilising enzyme, N-terminal LIN98_RS08165 PF02896 PEP-utilising enzyme, TIM barrel domain LIN98_RS08165 PF00391 PEP-utilising enzyme, mobile domain LIN98_RS08170 PF00381 PTS HPr component phosphorylation site LIN98_RS08175 PF03193 RsgA GTPase LIN98_RS08180 PF00929 Exonuclease LIN98_RS08190 PF00884 Sulfatase LIN98_RS08200 PF17284 Spermidine synthase tetramerisation domain LIN98_RS08205 PF00535 Glycosyl transferase family 2 LIN98_RS08210 PF04138 GtrA-like protein LIN98_RS08220 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LIN98_RS08225 PF01476 LysM domain LIN98_RS08225 PF01520 N-acetylmuramoyl-L-alanine amidase LIN98_RS08230 PF08676 MutL C terminal dimerisation domain LIN98_RS08230 PF01119 DNA mismatch repair protein, C-terminal domain LIN98_RS08240 PF17209 Hfq protein LIN98_RS08245 PF00158 Sigma-54 interaction domain LIN98_RS08245 PF18024 Helix-turn-helix domain LIN98_RS08250 PF05128 Domain of unknown function (DUF697) LIN98_RS08255 PF04317 YcjX-like family, DUF463 LIN98_RS08260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIN98_RS08265 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS08270 PF12911 N-terminal TM domain of oligopeptide transport permease C LIN98_RS08270 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS08275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIN98_RS08275 PF00005 ABC transporter LIN98_RS08280 PF00005 ABC transporter LIN98_RS08325 PF00953 Glycosyl transferase family 4 LIN98_RS08330 PF00202 Aminotransferase class-III LIN98_RS08335 PF08335 GlnD PII-uridylyltransferase LIN98_RS08335 PF01966 HD domain LIN98_RS08340 PF00557 Metallopeptidase family M24 LIN98_RS08345 PF01521 Iron-sulphur cluster biosynthesis LIN98_RS08355 PF14814 Bifunctional transglycosylase second domain LIN98_RS08355 PF00912 Transglycosylase LIN98_RS08355 PF00905 Penicillin binding protein transpeptidase domain LIN98_RS08360 PF03239 Iron permease FTR1 family LIN98_RS08365 PF10634 Fe2+ transport protein LIN98_RS08375 PF12704 MacB-like periplasmic core domain LIN98_RS08375 PF02687 FtsX-like permease family LIN98_RS08385 PF02687 FtsX-like permease family LIN98_RS08385 PF12704 MacB-like periplasmic core domain LIN98_RS08385 PF00005 ABC transporter LIN98_RS08390 PF00578 AhpC/TSA family LIN98_RS08400 PF13419 Haloacid dehalogenase-like hydrolase LIN98_RS08405 PF01609 Transposase DDE domain LIN98_RS08420 PF00270 DEAD/DEAH box helicase LIN98_RS08420 PF11898 Domain of unknown function (DUF3418) LIN98_RS08420 PF00271 Helicase conserved C-terminal domain LIN98_RS08420 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LIN98_RS08420 PF04408 Helicase associated domain (HA2) LIN98_RS08425 PF04241 Protein of unknown function (DUF423) LIN98_RS08430 PF04284 Protein of unknown function (DUF441) LIN98_RS08435 PF00462 Glutaredoxin LIN98_RS08440 PF00691 OmpA family LIN98_RS08440 PF01389 OmpA-like transmembrane domain LIN98_RS08445 PF13183 4Fe-4S dicluster domain LIN98_RS08445 PF01565 FAD binding domain LIN98_RS08445 PF02913 FAD linked oxidases, C-terminal domain LIN98_RS08450 PF03061 Thioesterase superfamily LIN98_RS08455 PF00762 Ferrochelatase LIN98_RS08460 PF08534 Redoxin LIN98_RS08465 PF01979 Amidohydrolase family LIN98_RS08470 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LIN98_RS08475 PF00701 Dihydrodipicolinate synthetase family LIN98_RS08480 PF01380 SIS domain LIN98_RS08480 PF01418 Helix-turn-helix domain, rpiR family LIN98_RS08485 PF00480 ROK family LIN98_RS08490 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LIN98_RS08495 PF03480 Bacterial extracellular solute-binding protein, family 7 LIN98_RS08500 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LIN98_RS08500 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LIN98_RS08505 PF01344 Kelch motif LIN98_RS08510 PF02378 Phosphotransferase system, EIIC LIN98_RS08510 PF00367 phosphotransferase system, EIIB LIN98_RS08510 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LIN98_RS08520 PF01389 OmpA-like transmembrane domain LIN98_RS08520 PF00691 OmpA family LIN98_RS08525 PF02151 UvrB/uvrC motif LIN98_RS08525 PF00271 Helicase conserved C-terminal domain LIN98_RS08525 PF17757 UvrB interaction domain LIN98_RS08525 PF12344 Ultra-violet resistance protein B LIN98_RS08525 PF04851 Type III restriction enzyme, res subunit LIN98_RS08535 PF03824 High-affinity nickel-transport protein LIN98_RS08540 PF06226 Protein of unknown function (DUF1007) LIN98_RS08545 PF12848 ABC transporter LIN98_RS08545 PF00005 ABC transporter LIN98_RS08550 PF03895 YadA-like membrane anchor domain LIN98_RS08555 PF00204 DNA gyrase B LIN98_RS08555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIN98_RS08555 PF01751 Toprim domain LIN98_RS08555 PF00986 DNA gyrase B subunit, carboxyl terminus LIN98_RS08560 PF00521 DNA gyrase/topoisomerase IV, subunit A LIN98_RS08560 PF03989 DNA gyrase C-terminal domain, beta-propeller LIN98_RS08565 PF02798 Glutathione S-transferase, N-terminal domain LIN98_RS08565 PF00043 Glutathione S-transferase, C-terminal domain LIN98_RS08570 PF08238 Sel1 repeat LIN98_RS08575 PF14256 YwiC-like protein LIN98_RS08580 PF01042 Endoribonuclease L-PSP LIN98_RS08595 PF00535 Glycosyl transferase family 2 LIN98_RS08600 PF03372 Endonuclease/Exonuclease/phosphatase family LIN98_RS08605 PF12170 DNA polymerase III tau subunit V interacting with alpha LIN98_RS08605 PF12169 DNA polymerase III subunits gamma and tau domain III LIN98_RS08610 PF00156 Phosphoribosyl transferase domain LIN98_RS08615 PF03279 Bacterial lipid A biosynthesis acyltransferase LIN98_RS08620 PF01925 Sulfite exporter TauE/SafE LIN98_RS08625 PF03411 Penicillin-insensitive murein endopeptidase LIN98_RS08630 PF01264 Chorismate synthase LIN98_RS08635 PF12795 Mechanosensitive ion channel porin domain LIN98_RS08635 PF12794 Mechanosensitive ion channel inner membrane domain 1 LIN98_RS08635 PF00924 Mechanosensitive ion channel LIN98_RS08640 PF00501 AMP-binding enzyme LIN98_RS08645 PF03925 SeqA protein C-terminal domain LIN98_RS08645 PF17206 SeqA protein N-terminal domain LIN98_RS08650 PF00561 alpha/beta hydrolase fold LIN98_RS08660 PF00258 Flavodoxin LIN98_RS08665 PF01475 Ferric uptake regulator family LIN98_RS08670 PF03989 DNA gyrase C-terminal domain, beta-propeller LIN98_RS08670 PF00521 DNA gyrase/topoisomerase IV, subunit A LIN98_RS08675 PF04247 Invasion gene expression up-regulator, SirB LIN98_RS08680 PF01253 Translation initiation factor SUI1 LIN98_RS08685 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LIN98_RS08690 PF18073 Rubredoxin metal binding domain LIN98_RS08695 PF06305 Lipopolysaccharide assembly protein A domain LIN98_RS08700 PF00216 Bacterial DNA-binding protein LIN98_RS08705 PF00575 S1 RNA binding domain LIN98_RS08710 PF02224 Cytidylate kinase LIN98_RS08715 PF04393 Protein of unknown function (DUF535) LIN98_RS08720 PF07715 TonB-dependent Receptor Plug Domain LIN98_RS08725 PF00675 Insulinase (Peptidase family M16) LIN98_RS08725 PF05193 Peptidase M16 inactive domain LIN98_RS08730 PF05437 Branched-chain amino acid transport protein (AzlD) LIN98_RS08735 PF03591 AzlC protein LIN98_RS08740 PF03466 LysR substrate binding domain LIN98_RS08740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIN98_RS08745 PF01717 Cobalamin-independent synthase, Catalytic domain LIN98_RS08745 PF08267 Cobalamin-independent synthase, N-terminal domain LIN98_RS08770 PF00176 SNF2 family N-terminal domain LIN98_RS08770 PF00271 Helicase conserved C-terminal domain LIN98_RS08780 PF01027 Inhibitor of apoptosis-promoting Bax1 LIN98_RS08785 PF04358 DsrC like protein LIN98_RS08790 PF01297 Zinc-uptake complex component A periplasmic LIN98_RS08795 PF00005 ABC transporter LIN98_RS08800 PF00950 ABC 3 transport family LIN98_RS08805 PF00950 ABC 3 transport family LIN98_RS08810 PF00708 Acylphosphatase LIN98_RS08815 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LIN98_RS08825 PF03733 Inner membrane component domain LIN98_RS08830 PF12805 FUSC-like inner membrane protein yccS LIN98_RS08835 PF01713 Smr domain LIN98_RS08840 PF05175 Methyltransferase small domain LIN98_RS08845 PF02779 Transketolase, pyrimidine binding domain LIN98_RS08845 PF02780 Transketolase, C-terminal domain LIN98_RS08850 PF00456 Transketolase, thiamine diphosphate binding domain LIN98_RS08870 PF00005 ABC transporter LIN98_RS08870 PF16326 ABC transporter C-terminal domain LIN98_RS08870 PF12848 ABC transporter LIN98_RS08875 PF01966 HD domain LIN98_RS08875 PF13286 Phosphohydrolase-associated domain LIN98_RS08880 PF04172 LrgB-like family LIN98_RS08885 PF03788 LrgA family LIN98_RS08895 PF00565 Staphylococcal nuclease homologue LIN98_RS08900 PF00266 Aminotransferase class-V LIN98_RS08905 PF02657 Fe-S metabolism associated domain LIN98_RS08910 PF01467 Cytidylyltransferase-like LIN98_RS08910 PF00294 pfkB family carbohydrate kinase LIN98_RS08915 PF03279 Bacterial lipid A biosynthesis acyltransferase LIN98_RS08925 PF02525 Flavodoxin-like fold LIN98_RS08935 PF01145 SPFH domain / Band 7 family LIN98_RS08935 PF16200 C-terminal region of band_7 LIN98_RS08945 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LIN98_RS08945 PF03625 Domain of unknown function DUF302 LIN98_RS08960 PF00034 Cytochrome c LIN98_RS08960 PF14376 Haem-binding domain LIN98_RS08960 PF03150 Di-haem cytochrome c peroxidase LIN98_RS08965 PF00570 HRDC domain LIN98_RS08965 PF01612 3'-5' exonuclease LIN98_RS08970 PF13193 AMP-binding enzyme C-terminal domain LIN98_RS08970 PF00501 AMP-binding enzyme LIN98_RS08975 PF03843 Outer membrane lipoprotein Slp family LIN98_RS08980 PF00814 Glycoprotease family LIN98_RS08985 PF13307 Helicase C-terminal domain LIN98_RS08985 PF06733 DEAD_2 LIN98_RS08990 PF01263 Aldose 1-epimerase LIN98_RS09000 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIN98_RS09005 PF00005 ABC transporter LIN98_RS09005 PF00664 ABC transporter transmembrane region LIN98_RS09010 PF00005 ABC transporter LIN98_RS09010 PF00664 ABC transporter transmembrane region LIN98_RS09020 PF02551 Acyl-CoA thioesterase LIN98_RS09035 PF07273 Protein of unknown function (DUF1439) LIN98_RS09040 PF00480 ROK family LIN98_RS09045 PF01569 PAP2 superfamily LIN98_RS09050 PF00925 GTP cyclohydrolase II LIN98_RS09065 PF06877 Regulator of ribonuclease activity B LIN98_RS09065 PF05117 Family of unknown function (DUF695) LIN98_RS09070 PF03372 Endonuclease/Exonuclease/phosphatase family LIN98_RS09075 PF02397 Bacterial sugar transferase LIN98_RS09080 PF00535 Glycosyl transferase family 2 LIN98_RS09085 PF00535 Glycosyl transferase family 2 LIN98_RS09095 PF00535 Glycosyl transferase family 2 LIN98_RS09100 PF04138 GtrA-like protein LIN98_RS09120 PF00535 Glycosyl transferase family 2 LIN98_RS09125 PF00005 ABC transporter LIN98_RS09130 PF01061 ABC-2 type transporter LIN98_RS09135 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LIN98_RS09140 PF04321 RmlD substrate binding domain LIN98_RS09145 PF00483 Nucleotidyl transferase LIN98_RS09150 PF16363 GDP-mannose 4,6 dehydratase LIN98_RS09155 PF13406 Transglycosylase SLT domain LIN98_RS09160 PF00535 Glycosyl transferase family 2 LIN98_RS09165 PF00535 Glycosyl transferase family 2 LIN98_RS09175 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) LIN98_RS09185 PF04230 Polysaccharide pyruvyl transferase LIN98_RS09190 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LIN98_RS09195 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LIN98_RS09200 PF02698 DUF218 domain LIN98_RS09205 PF14743 DNA ligase OB-like domain LIN98_RS09205 PF01068 ATP dependent DNA ligase domain LIN98_RS09210 PF13361 UvrD-like helicase C-terminal domain LIN98_RS09210 PF00580 UvrD/REP helicase N-terminal domain LIN98_RS09215 PF02447 GntP family permease LIN98_RS09220 PF01202 Shikimate kinase LIN98_RS09225 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LIN98_RS09225 PF00356 Bacterial regulatory proteins, lacI family LIN98_RS09230 PF02634 FdhD/NarQ family LIN98_RS09240 PF13247 4Fe-4S dicluster domain LIN98_RS09240 PF09163 Formate dehydrogenase N, transmembrane LIN98_RS09245 PF01292 Prokaryotic cytochrome b561 LIN98_RS09250 PF17788 HypF Kae1-like domain LIN98_RS09250 PF01300 Telomere recombination LIN98_RS09250 PF07503 HypF finger LIN98_RS09250 PF00708 Acylphosphatase LIN98_RS09255 PF12798 4Fe-4S binding domain LIN98_RS09255 PF00037 4Fe-4S binding domain LIN98_RS09260 PF00361 Proton-conducting membrane transporter LIN98_RS09265 PF00146 NADH dehydrogenase LIN98_RS09270 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LIN98_RS09270 PF00361 Proton-conducting membrane transporter LIN98_RS09275 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LIN98_RS09280 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LIN98_RS09280 PF00361 Proton-conducting membrane transporter LIN98_RS09285 PF00374 Nickel-dependent hydrogenase LIN98_RS09285 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LIN98_RS09285 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LIN98_RS09290 PF12838 4Fe-4S dicluster domain LIN98_RS09295 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LIN98_RS09300 PF07450 Formate hydrogenlyase maturation protein HycH LIN98_RS09305 PF01750 Hydrogenase maturation protease LIN98_RS09315 PF02629 CoA binding domain LIN98_RS09315 PF00549 CoA-ligase LIN98_RS09320 PF08442 ATP-grasp domain LIN98_RS09320 PF00549 CoA-ligase LIN98_RS09325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIN98_RS09325 PF02817 e3 binding domain LIN98_RS09325 PF00364 Biotin-requiring enzyme LIN98_RS09330 PF16078 2-oxoglutarate dehydrogenase N-terminus LIN98_RS09330 PF00676 Dehydrogenase E1 component LIN98_RS09330 PF02779 Transketolase, pyrimidine binding domain LIN98_RS09330 PF16870 2-oxoglutarate dehydrogenase C-terminal LIN98_RS09340 PF05951 Bacterial protein of unknown function (DUF882) LIN98_RS09345 PF03734 L,D-transpeptidase catalytic domain LIN98_RS09350 PF17804 Tail specific protease N-terminal domain LIN98_RS09350 PF03572 Peptidase family S41 LIN98_RS09350 PF00595 PDZ domain LIN98_RS09350 PF11818 C-terminal domain of tail specific protease (DUF3340) LIN98_RS09355 PF17516 ProQ C-terminal domain LIN98_RS09355 PF04352 ProQ/FINO family LIN98_RS09360 PF04403 Paraquat-inducible protein A LIN98_RS09365 PF02470 MlaD protein LIN98_RS09370 PF07687 Peptidase dimerisation domain LIN98_RS09370 PF01546 Peptidase family M20/M25/M40 LIN98_RS09375 PF00005 ABC transporter LIN98_RS09375 PF08402 TOBE domain LIN98_RS09380 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS09385 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS09390 PF13416 Bacterial extracellular solute-binding protein LIN98_RS09395 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LIN98_RS09395 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIN98_RS09400 PF02403 Seryl-tRNA synthetase N-terminal domain LIN98_RS09400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIN98_RS09405 PF03605 Anaerobic c4-dicarboxylate membrane transporter LIN98_RS09410 PF16193 AAA C-terminal domain LIN98_RS09410 PF00004 ATPase family associated with various cellular activities (AAA) LIN98_RS09410 PF12002 MgsA AAA+ ATPase C terminal LIN98_RS09415 PF03548 Outer membrane lipoprotein carrier protein LolA LIN98_RS09420 PF01580 FtsK/SpoIIIE family LIN98_RS09420 PF09397 Ftsk gamma domain LIN98_RS09420 PF17854 FtsK alpha domain LIN98_RS09420 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LIN98_RS09425 PF01037 Lrp/AsnC ligand binding domain LIN98_RS09430 PF18073 Rubredoxin metal binding domain LIN98_RS09435 PF01928 CYTH domain LIN98_RS09440 PF01865 Protein of unknown function DUF47 LIN98_RS09445 PF01384 Phosphate transporter family LIN98_RS09450 PF08239 Bacterial SH3 domain LIN98_RS09455 PF12627 Probable RNA and SrmB- binding site of polymerase A LIN98_RS09455 PF01966 HD domain LIN98_RS09455 PF01743 Poly A polymerase head domain LIN98_RS09460 PF03550 Outer membrane lipoprotein LolB LIN98_RS09465 PF00288 GHMP kinases N terminal domain LIN98_RS09465 PF08544 GHMP kinases C terminal LIN98_RS09470 PF14572 Phosphoribosyl synthetase-associated domain LIN98_RS09470 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LIN98_RS09480 PF01070 FMN-dependent dehydrogenase LIN98_RS09485 PF02652 L-lactate permease LIN98_RS09490 PF04363 Protein of unknown function (DUF496) LIN98_RS09495 PF00266 Aminotransferase class-V LIN98_RS09500 PF00155 Aminotransferase class I and II LIN98_RS09505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LIN98_RS09510 PF00075 RNase H LIN98_RS09515 PF00929 Exonuclease LIN98_RS09535 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LIN98_RS09550 PF16325 Peptidase family U32 C-terminal domain LIN98_RS09550 PF01136 Peptidase family U32 LIN98_RS09555 PF02547 Queuosine biosynthesis protein LIN98_RS09560 PF00155 Aminotransferase class I and II LIN98_RS09565 PF01702 Queuine tRNA-ribosyltransferase LIN98_RS09570 PF02699 Preprotein translocase subunit LIN98_RS09575 PF07549 SecD/SecF GG Motif LIN98_RS09575 PF13721 SecD export protein N-terminal TM region LIN98_RS09575 PF02355 Protein export membrane protein LIN98_RS09580 PF02355 Protein export membrane protein LIN98_RS09580 PF07549 SecD/SecF GG Motif LIN98_RS09585 PF00593 TonB dependent receptor LIN98_RS09585 PF07715 TonB-dependent Receptor Plug Domain LIN98_RS09590 PF00171 Aldehyde dehydrogenase family LIN98_RS09590 PF00465 Iron-containing alcohol dehydrogenase LIN98_RS09595 PF02653 Branched-chain amino acid transport system / permease component LIN98_RS09600 PF00005 ABC transporter LIN98_RS09605 PF13407 Periplasmic binding protein domain LIN98_RS09610 PF13407 Periplasmic binding protein domain LIN98_RS09615 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIN98_RS09615 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIN98_RS09620 PF00171 Aldehyde dehydrogenase family LIN98_RS09625 PF07690 Major Facilitator Superfamily LIN98_RS09630 PF00459 Inositol monophosphatase family LIN98_RS09635 PF04962 KduI/IolB family LIN98_RS09645 PF00294 pfkB family carbohydrate kinase LIN98_RS09650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIN98_RS09650 PF00205 Thiamine pyrophosphate enzyme, central domain LIN98_RS09650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIN98_RS09655 PF01261 Xylose isomerase-like TIM barrel LIN98_RS09660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIN98_RS09660 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIN98_RS09665 PF05068 Mannitol repressor LIN98_RS09670 PF08125 Mannitol dehydrogenase C-terminal domain LIN98_RS09670 PF01232 Mannitol dehydrogenase Rossmann domain LIN98_RS09675 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LIN98_RS09675 PF02378 Phosphotransferase system, EIIC LIN98_RS09675 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LIN98_RS09685 PF00005 ABC transporter LIN98_RS09685 PF03412 Peptidase C39 family LIN98_RS09685 PF00664 ABC transporter transmembrane region LIN98_RS09690 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) LIN98_RS09690 PF02382 N-terminal domain in RTX protein LIN98_RS09690 PF08339 RTX C-terminal domain LIN98_RS09695 PF02794 RTX toxin acyltransferase family LIN98_RS09705 PF00464 Serine hydroxymethyltransferase LIN98_RS09720 PF05175 Methyltransferase small domain LIN98_RS09720 PF08468 Methyltransferase small domain N-terminal LIN98_RS09725 PF03603 DNA polymerase III psi subunit LIN98_RS09730 PF00583 Acetyltransferase (GNAT) family LIN98_RS09735 PF17946 RecC C-terminal domain LIN98_RS09740 PF17344 Family of unknown function (DUF5374) LIN98_RS09745 PF10833 Protein of unknown function (DUF2572) LIN98_RS09770 PF00691 OmpA family LIN98_RS09775 PF07676 WD40-like Beta Propeller Repeat LIN98_RS09775 PF04052 TolB amino-terminal domain LIN98_RS09780 PF06519 TolA C-terminal LIN98_RS09785 PF02472 Biopolymer transport protein ExbD/TolR LIN98_RS09790 PF01618 MotA/TolQ/ExbB proton channel family LIN98_RS09795 PF03061 Thioesterase superfamily LIN98_RS09810 PF02322 Cytochrome bd terminal oxidase subunit II LIN98_RS09815 PF01654 Cytochrome bd terminal oxidase subunit I LIN98_RS09820 PF17274 Family of unknown function (DUF5339) LIN98_RS09825 PF05496 Holliday junction DNA helicase RuvB P-loop domain LIN98_RS09825 PF05491 RuvB C-terminal winged helix domain LIN98_RS09825 PF17864 RuvB AAA lid domain LIN98_RS09830 PF01330 RuvA N terminal domain LIN98_RS09830 PF07499 RuvA, C-terminal domain LIN98_RS09835 PF02075 Crossover junction endodeoxyribonuclease RuvC LIN98_RS09845 PF01709 Transcriptional regulator LIN98_RS09850 PF00293 NUDIX domain LIN98_RS09860 PF01336 OB-fold nucleic acid binding domain LIN98_RS09860 PF02938 GAD domain LIN98_RS09860 PF00152 tRNA synthetases class II (D, K and N) LIN98_RS09865 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family LIN98_RS09870 PF13649 Methyltransferase domain LIN98_RS09880 PF07690 Major Facilitator Superfamily LIN98_RS09885 PF07715 TonB-dependent Receptor Plug Domain LIN98_RS09885 PF00593 TonB dependent receptor LIN98_RS09890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIN98_RS09895 PF00929 Exonuclease LIN98_RS09900 PF13726 Na+-H+ antiporter family LIN98_RS09900 PF03553 Na+/H+ antiporter family LIN98_RS09910 PF00919 Uncharacterized protein family UPF0004 LIN98_RS09910 PF01938 TRAM domain LIN98_RS09910 PF04055 Radical SAM superfamily LIN98_RS09915 PF01494 FAD binding domain LIN98_RS09925 PF02677 Epoxyqueuosine reductase QueH LIN98_RS09930 PF00348 Polyprenyl synthetase LIN98_RS09935 PF00829 Ribosomal prokaryotic L21 protein LIN98_RS09940 PF01016 Ribosomal L27 protein LIN98_RS09945 PF00892 EamA-like transporter family LIN98_RS09950 PF00892 EamA-like transporter family LIN98_RS09955 PF01018 GTP1/OBG LIN98_RS09955 PF01926 50S ribosome-binding GTPase LIN98_RS09960 PF01668 SmpB protein LIN98_RS09965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIN98_RS09970 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS09975 PF00528 Binding-protein-dependent transport system inner membrane component LIN98_RS09975 PF12911 N-terminal TM domain of oligopeptide transport permease C LIN98_RS09980 PF00005 ABC transporter LIN98_RS09980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIN98_RS09985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIN98_RS09985 PF00005 ABC transporter LIN98_RS09990 PF00486 Transcriptional regulatory protein, C terminal LIN98_RS09990 PF00072 Response regulator receiver domain LIN98_RS09995 PF00444 Ribosomal protein L36 LIN98_RS10000 PF01197 Ribosomal protein L31 LIN98_RS10005 PF03641 Possible lysine decarboxylase LIN98_RS10010 PF00085 Thioredoxin LIN98_RS10010 PF11412 Disulphide bond corrector protein DsbC LIN98_RS10010 PF02683 Cytochrome C biogenesis protein transmembrane region LIN98_RS10015 PF07681 DoxX LIN98_RS10025 PF00575 S1 RNA binding domain LIN98_RS10025 PF10150 Ribonuclease E/G family LIN98_RS10025 PF12111 Polyribonucleotide phosphorylase C terminal LIN98_RS10030 PF00849 RNA pseudouridylate synthase LIN98_RS10030 PF01479 S4 domain LIN98_RS10035 PF00085 Thioredoxin LIN98_RS10040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIN98_RS10040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIN98_RS10045 PF01053 Cys/Met metabolism PLP-dependent enzyme LIN98_RS10060 PF01464 Transglycosylase SLT domain LIN98_RS10065 PF03524 Conjugal transfer protein LIN98_RS10075 PF03458 UPF0126 domain LIN98_RS10085 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LIN98_RS10090 PF01225 Mur ligase family, catalytic domain LIN98_RS10090 PF08245 Mur ligase middle domain LIN98_RS10090 PF02875 Mur ligase family, glutamate ligase domain LIN98_RS10100 PF06725 3D domain LIN98_RS10100 PF03562 MltA specific insert domain LIN98_RS10105 PF00899 ThiF family LIN98_RS10110 PF01297 Zinc-uptake complex component A periplasmic LIN98_RS10115 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LIN98_RS10120 PF04461 Protein of unknown function (DUF520) LIN98_RS10125 PF18429 Domain of unknown function (DUF5609) LIN98_RS10130 PF10144 Bacterial virulence factor haemolysin LIN98_RS10135 PF01649 Ribosomal protein S20 LIN98_RS10140 PF03023 Lipid II flippase MurJ LIN98_RS10145 PF06574 FAD synthetase LIN98_RS10145 PF01687 Riboflavin kinase LIN98_RS10155 PF06827 Zinc finger found in FPG and IleRS LIN98_RS10155 PF08264 Anticodon-binding domain of tRNA LIN98_RS10155 PF00133 tRNA synthetases class I (I, L, M and V) LIN98_RS10160 PF01252 Signal peptidase (SPase) II LIN98_RS10165 PF02401 LytB protein LIN98_RS10170 PF05698 Bacterial trigger factor protein (TF) C-terminus LIN98_RS10170 PF05697 Bacterial trigger factor protein (TF) LIN98_RS10170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIN98_RS10175 PF00589 Phage integrase family LIN98_RS10175 PF02899 Phage integrase, N-terminal SAM-like domain LIN98_RS10180 PF12832 MFS_1 like family LIN98_RS10190 PF04381 Putative exonuclease, RdgC LIN98_RS10200 PF04225 Opacity-associated protein A LysM-like domain LIN98_RS10200 PF08525 Opacity-associated protein A N-terminal motif LIN98_RS10205 PF04055 Radical SAM superfamily LIN98_RS10210 PF09285 Elongation factor P, C-terminal LIN98_RS10210 PF01132 Elongation factor P (EF-P) OB domain LIN98_RS10210 PF08207 Elongation factor P (EF-P) KOW-like domain LIN98_RS10215 PF01212 Beta-eliminating lyase LIN98_RS10220 PF03222 Tryptophan/tyrosine permease family LIN98_RS10225 PF13309 HTH domain LIN98_RS10225 PF08348 YheO-like PAS domain LIN98_RS10230 PF10063 Uncharacterized integral membrane protein (DUF2301) LIN98_RS10235 PF00149 Calcineurin-like phosphoesterase LIN98_RS10240 PF01553 Acyltransferase LIN98_RS10245 PF07732 Multicopper oxidase LIN98_RS10250 PF00892 EamA-like transporter family LIN98_RS10255 PF04055 Radical SAM superfamily LIN98_RS10260 PF01228 Glycine radical LIN98_RS10260 PF02901 Pyruvate formate lyase-like LIN98_RS10265 PF01226 Formate/nitrite transporter LIN98_RS10270 PF01230 HIT domain LIN98_RS10280 PF00933 Glycosyl hydrolase family 3 N terminal domain LIN98_RS10285 PF05958 tRNA (Uracil-5-)-methyltransferase LIN98_RS10290 PF00365 Phosphofructokinase LIN98_RS10305 PF03883 Peroxide stress protein YaaA LIN98_RS10310 PF03167 Uracil DNA glycosylase superfamily LIN98_RS10315 PF01228 Glycine radical LIN98_RS10320 PF06421 GTP-binding protein LepA C-terminus LIN98_RS10320 PF03144 Elongation factor Tu domain 2 LIN98_RS10320 PF00679 Elongation factor G C-terminus LIN98_RS10320 PF00009 Elongation factor Tu GTP binding domain LIN98_RS10325 PF10502 Signal peptidase, peptidase S26 LIN98_RS10330 PF00035 Double-stranded RNA binding motif LIN98_RS10330 PF14622 Ribonuclease-III-like LIN98_RS10335 PF07650 KH domain LIN98_RS10335 PF01926 50S ribosome-binding GTPase LIN98_RS10340 PF01926 50S ribosome-binding GTPase LIN98_RS10340 PF12631 MnmE helical domain LIN98_RS10340 PF10396 GTP-binding protein TrmE N-terminus LIN98_RS10345 PF02096 60Kd inner membrane protein LIN98_RS10345 PF14849 YidC periplasmic domain LIN98_RS10350 PF01809 Putative membrane protein insertion efficiency factor LIN98_RS10355 PF00825 Ribonuclease P LIN98_RS10360 PF00468 Ribosomal protein L34 LIN98_RS10365 PF00072 Response regulator receiver domain LIN98_RS10365 PF00486 Transcriptional regulatory protein, C terminal LIN98_RS10370 PF00072 Response regulator receiver domain LIN98_RS10370 PF02954 Bacterial regulatory protein, Fis family LIN98_RS10370 PF14532 Sigma-54 interaction domain