CF65_RS00005	SM00382	ATPases associated with a variety of cellular activities
CF65_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CF65_RS00010	SM00480	DNA polymerase III beta subunit
CF65_RS00040	SM00530	Helix-turn-helix XRE-family like proteins 
CF65_RS00045	SM00919	Malic enzyme, NAD binding domain
CF65_RS00045	SM01274	CF65_RS00045
CF65_RS00080	SM00671	Sel1-like repeats.
CF65_RS00085	SM00530	Helix-turn-helix XRE-family like proteins 
CF65_RS00145	SM00028	Tetratricopeptide repeats
CF65_RS00230	SM00382	ATPases associated with a variety of cellular activities
CF65_RS00240	SM00363	S4 RNA-binding domain
CF65_RS00245	SM00919	Malic enzyme, NAD binding domain
CF65_RS00245	SM01274	CF65_RS00245
CF65_RS00265	SM00257	Lysin motif
CF65_RS00270	SM01207	CF65_RS00270
CF65_RS00275	SM00905	Dihydroneopterin aldolase
CF65_RS00280	SM00062	Bacterial periplasmic substrate-binding proteins
CF65_RS00295	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF65_RS00320	SM01387	CF65_RS00320
CF65_RS00330	SM00731	SprT homologues.
CF65_RS00345	SM00870	CF65_RS00345
CF65_RS00355	SM00028	Tetratricopeptide repeats
CF65_RS00385	SM00382	ATPases associated with a variety of cellular activities
CF65_RS00420	SM00382	ATPases associated with a variety of cellular activities
CF65_RS00420	SM00994	ClpX C4-type zinc finger
CF65_RS00420	SM01086	C-terminal, D2-small domain, of ClpB protein
CF65_RS00450	SM00422	helix_turn_helix, mercury resistance
CF65_RS00505	SM00984	UDP binding domain
CF65_RS00510	SM00487	DEAD-like helicases superfamily
CF65_RS00510	SM00490	helicase superfamily c-terminal domain
CF65_RS00515	SM00028	Tetratricopeptide repeats
CF65_RS00520	SM00316	Ribosomal protein S1-like RNA-binding domain
CF65_RS00520	SM00322	K homology RNA-binding domain
CF65_RS00530	SM00644	CF65_RS00530
CF65_RS00625	SM00878	Biotin carboxylase C-terminal domain
CF65_RS00640	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CF65_RS00670	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF65_RS00720	SM00382	ATPases associated with a variety of cellular activities
CF65_RS00740	SM00357	Cold shock protein domain
CF65_RS00780	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CF65_RS00785	SM01060	CF65_RS00785
CF65_RS00790	SM00481	DNA polymerase alpha chain like domain
CF65_RS00830	SM00840	CF65_RS00830
CF65_RS00835	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF65_RS00850	SM00936	Penicillin-binding protein 5, C-terminal domain 
CF65_RS00880	SM00487	DEAD-like helicases superfamily
CF65_RS00880	SM00490	helicase superfamily c-terminal domain
CF65_RS00885	SM00357	Cold shock protein domain
CF65_RS00885	SM00382	ATPases associated with a variety of cellular activities
CF65_RS00885	SM00959	Rho termination factor, N-terminal domain
CF65_RS00900	SM00822	CF65_RS00900
CF65_RS00905	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CF65_RS00965	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CF65_RS00995	SM01091	Transporter associated domain
CF65_RS01025	SM00938	Nitrogen regulatory protein P-II
CF65_RS01030	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF65_RS01030	SM01134	CF65_RS01030
CF65_RS01045	SM01007	Class II Aldolase and Adducin N-terminal domain
CF65_RS01065	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CF65_RS01065	SM00534	ATPase domain of DNA mismatch repair MUTS family
CF65_RS01150	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CF65_RS01150	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CF65_RS01155	SM00649	Ribosomal protein L11/L12
CF65_RS01180	SM00663	RNA polymerase I subunit A N-terminus
CF65_RS01185	SM01321	CF65_RS01185
CF65_RS01205	SM00322	K homology RNA-binding domain
CF65_RS01220	SM01382	CF65_RS01220
CF65_RS01220	SM01383	CF65_RS01220
CF65_RS01240	SM01403	CF65_RS01240
CF65_RS01250	SM00882	Coenzyme A transferase
CF65_RS01255	SM00882	Coenzyme A transferase
CF65_RS01270	SM00344	helix_turn_helix ASNC type
CF65_RS01305	SM00344	helix_turn_helix ASNC type
CF65_RS01335	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF65_RS01340	SM00226	Low molecular weight phosphatase family
CF65_RS01415	SM00382	ATPases associated with a variety of cellular activities
CF65_RS01415	SM00930	CF65_RS01415
CF65_RS01480	SM00478	endonuclease III
CF65_RS01510	SM00470	ParB-like nuclease domain
CF65_RS01515	SM00470	ParB-like nuclease domain
CF65_RS01520	SM00857	Resolvase, N terminal domain
CF65_RS01580	SM00855	Phosphoglycerate mutase family
CF65_RS01600	SM00382	ATPases associated with a variety of cellular activities
CF65_RS01600	SM01086	C-terminal, D2-small domain, of ClpB protein
CF65_RS01650	SM00382	ATPases associated with a variety of cellular activities
CF65_RS01650	SM00962	SRP54-type protein, GTPase domain
CF65_RS01650	SM00963	SRP54-type protein, helical bundle domain
CF65_RS01740	SM00487	DEAD-like helicases superfamily
CF65_RS01740	SM00490	helicase superfamily c-terminal domain
CF65_RS01770	SM01266	CF65_RS01770
CF65_RS01815	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CF65_RS01815	SM00474	3'-5' exonuclease
CF65_RS01815	SM00475	5'-3' exonuclease
CF65_RS01815	SM00482	DNA polymerase A domain
CF65_RS01880	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF65_RS01890	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF65_RS01890	SM00387	Histidine kinase-like ATPases
CF65_RS01920	SM00838	Elongation factor G C-terminus
CF65_RS01920	SM00889	Elongation factor G, domain IV
CF65_RS01975	SM00450	Rhodanese Homology Domain
CF65_RS02000	SM00382	ATPases associated with a variety of cellular activities
CF65_RS02035	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF65_RS02045	SM00935	Outer membrane protein (OmpH-like)
CF65_RS02085	SM00852	Probable molybdopterin binding domain
CF65_RS02125	SM00116	Domain in cystathionine beta-synthase and other proteins.
CF65_RS02125	SM01240	CF65_RS02125
CF65_RS02155	SM00855	Phosphoglycerate mutase family
CF65_RS02190	SM00937	CF65_RS02190
CF65_RS02205	SM00836	DALR anticodon binding domain
CF65_RS02205	SM01016	Arginyl tRNA synthetase N terminal dom
CF65_RS02220	SM00271	DnaJ molecular chaperone homology domain
CF65_RS02305	SM00316	Ribosomal protein S1-like RNA-binding domain
CF65_RS02320	SM00788	Adenylosuccinate synthetase
CF65_RS02330	SM00271	DnaJ molecular chaperone homology domain
CF65_RS02335	SM00173	Ras subfamily of RAS small GTPases
CF65_RS02335	SM00382	ATPases associated with a variety of cellular activities
CF65_RS02375	SM00382	ATPases associated with a variety of cellular activities
CF65_RS02415	SM00271	DnaJ molecular chaperone homology domain
CF65_RS02450	SM00562	CF65_RS02450
CF65_RS02460	SM00316	Ribosomal protein S1-like RNA-binding domain
CF65_RS02470	SM00116	Domain in cystathionine beta-synthase and other proteins.
CF65_RS02470	SM01091	Transporter associated domain
CF65_RS02475	SM00764	Citrate lyase ligase C-terminal domain
CF65_RS02530	SM00354	helix_turn _helix lactose operon repressor
CF65_RS02540	SM00382	ATPases associated with a variety of cellular activities
CF65_RS02550	SM00073	Histidine Phosphotransfer domain
CF65_RS02550	SM00387	Histidine kinase-like ATPases
CF65_RS02550	SM00388	His Kinase A (phosphoacceptor) domain
CF65_RS02550	SM00448	cheY-homologous receiver domain
CF65_RS02555	SM00825	Beta-ketoacyl synthase
CF65_RS02665	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CF65_RS02665	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CF65_RS02665	SM00493	CF65_RS02665
CF65_RS02670	SM00493	CF65_RS02670
CF65_RS02700	SM00382	ATPases associated with a variety of cellular activities
CF65_RS02730	SM00981	CF65_RS02730
CF65_RS02735	SM00829	Enoylreductase
CF65_RS02785	SM00387	Histidine kinase-like ATPases
CF65_RS02790	SM00830	Chorismate mutase type II
CF65_RS02800	SM00864	Tubulin/FtsZ family, GTPase domain
CF65_RS02800	SM00865	Tubulin/FtsZ family, C-terminal domain
CF65_RS02805	SM00842	Cell division protein FtsA
CF65_RS02890	SM00062	Bacterial periplasmic substrate-binding proteins
CF65_RS02890	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CF65_RS02895	SM00382	ATPases associated with a variety of cellular activities
CF65_RS02905	SM00487	DEAD-like helicases superfamily
CF65_RS02905	SM00490	helicase superfamily c-terminal domain
CF65_RS02905	SM00982	CF65_RS02905
CF65_RS02905	SM01058	CarD-like/TRCF domain
CF65_RS03120	SM01219	CF65_RS03120
CF65_RS03125	SM00341	Helicase and RNase D C-terminal
CF65_RS03125	SM00487	DEAD-like helicases superfamily
CF65_RS03125	SM00490	helicase superfamily c-terminal domain
CF65_RS03125	SM00956	CF65_RS03125
CF65_RS03130	SM00387	Histidine kinase-like ATPases
CF65_RS03130	SM00433	TopoisomeraseII
CF65_RS03185	SM00316	Ribosomal protein S1-like RNA-binding domain
CF65_RS03185	SM00732	Likely ribonuclease with RNase H fold.
CF65_RS03200	SM00855	Phosphoglycerate mutase family
CF65_RS03255	SM00421	helix_turn_helix, Lux Regulon
CF65_RS03255	SM00448	cheY-homologous receiver domain
CF65_RS03300	SM00411	bacterial (prokaryotic) histone like domain
CF65_RS03305	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF65_RS03305	SM01134	CF65_RS03305
CF65_RS03360	SM00382	ATPases associated with a variety of cellular activities
CF65_RS03390	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CF65_RS03390	SM00387	Histidine kinase-like ATPases
CF65_RS03390	SM00388	His Kinase A (phosphoacceptor) domain
CF65_RS03395	SM00448	cheY-homologous receiver domain
CF65_RS03395	SM00862	Transcriptional regulatory protein, C terminal
CF65_RS03435	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CF65_RS03470	SM00732	Likely ribonuclease with RNase H fold.
CF65_RS03475	SM01192	CF65_RS03475
CF65_RS03475	SM01193	CF65_RS03475
CF65_RS03510	SM00900	CF65_RS03510
CF65_RS03555	SM00478	endonuclease III
CF65_RS03555	SM00525	CF65_RS03555
CF65_RS03580	SM00382	ATPases associated with a variety of cellular activities
CF65_RS03595	SM00271	DnaJ molecular chaperone homology domain
CF65_RS03645	SM00954	Region found in RelA / SpoT proteins
CF65_RS03665	SM00422	helix_turn_helix, mercury resistance
CF65_RS03680	SM00957	SecA DEAD-like domain
CF65_RS03680	SM00958	SecA preprotein cross-linking domain
CF65_RS03725	SM00650	Ribosomal RNA adenine dimethylases
CF65_RS03755	SM00822	CF65_RS03755
CF65_RS03765	SM00829	Enoylreductase
CF65_RS03775	SM00382	ATPases associated with a variety of cellular activities
CF65_RS03775	SM00962	SRP54-type protein, GTPase domain
CF65_RS03775	SM00963	SRP54-type protein, helical bundle domain
CF65_RS03785	SM01091	Transporter associated domain
CF65_RS03845	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF65_RS03895	SM01004	Delta-aminolevulinic acid dehydratase
CF65_RS03920	SM00363	S4 RNA-binding domain
CF65_RS03935	SM00342	helix_turn_helix, arabinose operon control protein
CF65_RS03990	SM01350	CF65_RS03990
CF65_RS03995	SM00825	Beta-ketoacyl synthase
CF65_RS04000	SM00822	CF65_RS04000
CF65_RS04010	SM00825	Beta-ketoacyl synthase
CF65_RS04070	SM00563	Phosphate acyltransferases
CF65_RS04120	SM00382	ATPases associated with a variety of cellular activities
CF65_RS04120	SM01086	C-terminal, D2-small domain, of ClpB protein
CF65_RS04125	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF65_RS04130	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CF65_RS04170	SM01374	CF65_RS04170
CF65_RS04175	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CF65_RS04235	SM00363	S4 RNA-binding domain
CF65_RS04235	SM01390	CF65_RS04235
CF65_RS04240	SM00662	RNA polymerases D
CF65_RS04265	SM00530	Helix-turn-helix XRE-family like proteins 
CF65_RS04350	SM00883	Chaperonin 10 Kd subunit
CF65_RS04450	SM00100	Cyclic nucleotide-monophosphate binding domain
CF65_RS04450	SM00419	helix_turn_helix, cAMP Regulatory protein
CF65_RS04485	SM00530	Helix-turn-helix XRE-family like proteins 
CF65_RS04505	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CF65_RS04505	SM01232	CF65_RS04505
CF65_RS04545	SM00487	DEAD-like helicases superfamily
CF65_RS04545	SM00490	helicase superfamily c-terminal domain
CF65_RS04585	SM01152	CF65_RS04585
CF65_RS04605	SM00363	S4 RNA-binding domain
CF65_RS04630	SM01011	Aminopeptidase P, N-terminal domain
CF65_RS04670	SM00316	Ribosomal protein S1-like RNA-binding domain
CF65_RS04670	SM00357	Cold shock protein domain
CF65_RS04670	SM00955	CF65_RS04670
CF65_RS04675	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CF65_RS04720	SM00563	Phosphate acyltransferases
CF65_RS04725	SM00382	ATPases associated with a variety of cellular activities
CF65_RS04730	SM00342	helix_turn_helix, arabinose operon control protein
CF65_RS04770	SM00257	Lysin motif
CF65_RS04820	SM00382	ATPases associated with a variety of cellular activities
CF65_RS04880	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CF65_RS04885	SM00155	Phospholipase D. Active site motifs.
CF65_RS04920	SM00382	ATPases associated with a variety of cellular activities
CF65_RS04940	SM00342	helix_turn_helix, arabinose operon control protein
CF65_RS04985	SM00487	DEAD-like helicases superfamily
CF65_RS05000	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05055	SM01228	CF65_RS05055
CF65_RS05075	SM00971	Serine acetyltransferase, N-terminal
CF65_RS05090	SM00450	Rhodanese Homology Domain
CF65_RS05100	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05105	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05155	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05165	SM00062	Bacterial periplasmic substrate-binding proteins
CF65_RS05205	SM00028	Tetratricopeptide repeats
CF65_RS05210	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF65_RS05210	SM01134	CF65_RS05210
CF65_RS05215	SM01133	CF65_RS05215
CF65_RS05245	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05255	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05270	SM00861	Transketolase, pyrimidine binding domain
CF65_RS05300	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05305	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05350	SM00853	MutL C terminal dimerisation domain
CF65_RS05350	SM01340	CF65_RS05350
CF65_RS05355	SM00257	Lysin motif
CF65_RS05355	SM00646	CF65_RS05355
CF65_RS05400	SM00479	CF65_RS05400
CF65_RS05465	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05480	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05485	SM01005	Alanine racemase, C-terminal domain
CF65_RS05565	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05570	SM00642	Alpha-amylase domain
CF65_RS05590	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05610	SM00852	Probable molybdopterin binding domain
CF65_RS05630	SM01103	CF65_RS05630
CF65_RS05675	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05690	SM01359	CF65_RS05690
CF65_RS05690	SM01360	CF65_RS05690
CF65_RS05705	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CF65_RS05725	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF65_RS05725	SM01134	CF65_RS05725
CF65_RS05735	SM01007	Class II Aldolase and Adducin N-terminal domain
CF65_RS05825	SM00316	Ribosomal protein S1-like RNA-binding domain
CF65_RS05825	SM00357	Cold shock protein domain
CF65_RS05825	SM00955	CF65_RS05825
CF65_RS05855	SM00937	CF65_RS05855
CF65_RS05900	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05970	SM00382	ATPases associated with a variety of cellular activities
CF65_RS05995	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF65_RS06000	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF65_RS06070	SM00900	CF65_RS06070
CF65_RS06080	SM00478	endonuclease III
CF65_RS06080	SM00525	CF65_RS06080
CF65_RS06095	SM00382	ATPases associated with a variety of cellular activities
CF65_RS06105	SM00382	ATPases associated with a variety of cellular activities
CF65_RS06140	SM00448	cheY-homologous receiver domain
CF65_RS06170	SM00387	Histidine kinase-like ATPases
CF65_RS06170	SM00388	His Kinase A (phosphoacceptor) domain
CF65_RS06205	SM00530	Helix-turn-helix XRE-family like proteins 
CF65_RS06240	SM00382	ATPases associated with a variety of cellular activities
CF65_RS06245	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF65_RS06245	SM00876	Biotin and Thiamin Synthesis associated domain
CF65_RS06250	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF65_RS06285	SM00849	Metallo-beta-lactamase superfamily
CF65_RS06350	SM00977	TilS substrate C-terminal domain
CF65_RS06365	SM00095	Transthyretin
CF65_RS06400	SM01040	BRO family, N-terminal domain
CF65_RS06470	SM00316	Ribosomal protein S1-like RNA-binding domain
CF65_RS06490	SM00487	DEAD-like helicases superfamily
CF65_RS06490	SM00490	helicase superfamily c-terminal domain
CF65_RS06510	SM00363	S4 RNA-binding domain
CF65_RS06520	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CF65_RS06520	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CF65_RS06560	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF65_RS06560	SM00465	GIY-YIG type nucleases (URI domain)
CF65_RS06580	SM00382	ATPases associated with a variety of cellular activities
CF65_RS06585	SM00849	Metallo-beta-lactamase superfamily
CF65_RS06640	SM00421	helix_turn_helix, Lux Regulon
CF65_RS06690	SM00363	S4 RNA-binding domain
CF65_RS06710	SM00354	helix_turn _helix lactose operon repressor
CF65_RS06725	SM00354	helix_turn _helix lactose operon repressor
CF65_RS06755	SM00947	Carbonic anhydrase
CF65_RS06815	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CF65_RS06840	SM01133	CF65_RS06840
CF65_RS06870	SM00420	helix_turn_helix, Deoxyribose operon repressor
CF65_RS06870	SM01134	CF65_RS06870
CF65_RS06875	SM00861	Transketolase, pyrimidine binding domain
CF65_RS06900	SM00855	Phosphoglycerate mutase family
CF65_RS06905	SM00155	Phospholipase D. Active site motifs.
CF65_RS06960	SM00382	ATPases associated with a variety of cellular activities
CF65_RS06985	SM00642	Alpha-amylase domain
CF65_RS07055	SM00479	CF65_RS07055
CF65_RS07085	SM00100	Cyclic nucleotide-monophosphate binding domain
CF65_RS07085	SM00419	helix_turn_helix, cAMP Regulatory protein
CF65_RS07100	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CF65_RS07100	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CF65_RS07100	SM00493	CF65_RS07100
CF65_RS07105	SM00481	DNA polymerase alpha chain like domain
CF65_RS07135	SM00382	ATPases associated with a variety of cellular activities
CF65_RS07180	SM00382	ATPases associated with a variety of cellular activities
CF65_RS07220	SM00411	bacterial (prokaryotic) histone like domain
CF65_RS07225	SM00873	B3/4 domain
CF65_RS07225	SM00874	tRNA synthetase B5 domain
CF65_RS07225	SM00896	Ferredoxin-fold anticodon binding domain
CF65_RS07240	SM00116	Domain in cystathionine beta-synthase and other proteins.
CF65_RS07275	SM00530	Helix-turn-helix XRE-family like proteins 
CF65_RS07375	SM00382	ATPases associated with a variety of cellular activities
CF65_RS07435	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF65_RS07455	SM00981	CF65_RS07455
CF65_RS07510	SM00382	ATPases associated with a variety of cellular activities
CF65_RS07545	SM00357	Cold shock protein domain
CF65_RS07580	SM00387	Histidine kinase-like ATPases
CF65_RS07605	SM00382	ATPases associated with a variety of cellular activities
CF65_RS07620	SM00528	Domain in histone-like proteins of HNS family
CF65_RS07665	SM00487	DEAD-like helicases superfamily
CF65_RS07665	SM00490	helicase superfamily c-terminal domain
CF65_RS07670	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF65_RS07670	SM00954	Region found in RelA / SpoT proteins
CF65_RS07675	SM01409	CF65_RS07675
CF65_RS07680	SM00072	Guanylate kinase homologues.
CF65_RS07685	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CF65_RS07705	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CF65_RS07725	SM00382	ATPases associated with a variety of cellular activities
CF65_RS07740	SM00382	ATPases associated with a variety of cellular activities
CF65_RS07775	SM00382	ATPases associated with a variety of cellular activities
CF65_RS07810	SM00927	DNA mismatch repair enzyme MutH
CF65_RS07830	SM01230	CF65_RS07830
CF65_RS07850	SM01130	CF65_RS07850
CF65_RS07865	SM00382	ATPases associated with a variety of cellular activities
CF65_RS07905	SM00244	prohibitin homologues
CF65_RS07910	SM00244	prohibitin homologues
CF65_RS07930	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF65_RS07990	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CF65_RS07990	SM00895	CF65_RS07990
CF65_RS08020	SM00382	ATPases associated with a variety of cellular activities
CF65_RS08020	SM00464	Found in ATP-dependent protease La (LON)
CF65_RS08030	SM00400	zinc finger
CF65_RS08030	SM00493	CF65_RS08030
CF65_RS08030	SM00766	DNA primase DnaG DnaB-binding
CF65_RS08055	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF65_RS08055	SM00292	breast cancer carboxy-terminal domain
CF65_RS08055	SM00532	Ligase N family
CF65_RS08060	SM00771	ZipA, C-terminal domain (FtsZ-binding)
CF65_RS08075	SM00986	Uracil DNA glycosylase superfamily
CF65_RS08075	SM00987	UreE urease accessory protein, C-terminal domain 
CF65_RS08160	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF65_RS08210	SM00382	ATPases associated with a variety of cellular activities
CF65_RS08240	SM00382	ATPases associated with a variety of cellular activities
CF65_RS08240	SM00487	DEAD-like helicases superfamily
CF65_RS08240	SM00490	helicase superfamily c-terminal domain
CF65_RS08240	SM00847	Helicase associated domain (HA2)  Add an annotation
CF65_RS08295	SM01130	CF65_RS08295
CF65_RS08340	SM00487	DEAD-like helicases superfamily
CF65_RS08340	SM00490	helicase superfamily c-terminal domain
CF65_RS08360	SM00382	ATPases associated with a variety of cellular activities
CF65_RS08370	SM00387	Histidine kinase-like ATPases
CF65_RS08370	SM00433	TopoisomeraseII
CF65_RS08375	SM00434	DNA Topoisomerase IV
CF65_RS08385	SM00671	Sel1-like repeats.
CF65_RS08420	SM00382	ATPases associated with a variety of cellular activities
CF65_RS08480	SM00434	DNA Topoisomerase IV
CF65_RS08495	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CF65_RS08510	SM00411	bacterial (prokaryotic) histone like domain
CF65_RS08515	SM00316	Ribosomal protein S1-like RNA-binding domain
CF65_RS08570	SM00487	DEAD-like helicases superfamily
CF65_RS08595	SM00382	ATPases associated with a variety of cellular activities
CF65_RS08620	SM00851	MGS-like domain
CF65_RS08635	SM00463	Small MutS-related domain
CF65_RS08645	SM00861	Transketolase, pyrimidine binding domain
CF65_RS08675	SM00382	ATPases associated with a variety of cellular activities
CF65_RS08680	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CF65_RS08700	SM00318	Staphylococcal nuclease homologues
CF65_RS08740	SM00244	prohibitin homologues
CF65_RS08765	SM01235	CF65_RS08765
CF65_RS08770	SM00341	Helicase and RNase D C-terminal
CF65_RS08770	SM00474	3'-5' exonuclease
CF65_RS08790	SM00487	DEAD-like helicases superfamily
CF65_RS08790	SM00491	CF65_RS08790
CF65_RS08810	SM00382	ATPases associated with a variety of cellular activities
CF65_RS08815	SM00382	ATPases associated with a variety of cellular activities
CF65_RS08845	SM00014	Acid phosphatase homologues
CF65_RS08925	SM00382	ATPases associated with a variety of cellular activities
CF65_RS09025	SM00354	helix_turn _helix lactose operon repressor
CF65_RS09035	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF65_RS09115	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CF65_RS09125	SM00881	CoA binding domain
CF65_RS09140	SM00861	Transketolase, pyrimidine binding domain
CF65_RS09145	SM00849	Metallo-beta-lactamase superfamily
CF65_RS09160	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CF65_RS09160	SM00245	tail specific protease
CF65_RS09165	SM00945	ProQ/FINO family
CF65_RS09185	SM00382	ATPases associated with a variety of cellular activities
CF65_RS09220	SM00382	ATPases associated with a variety of cellular activities
CF65_RS09230	SM00843	CF65_RS09230
CF65_RS09235	SM00344	helix_turn_helix ASNC type
CF65_RS09240	SM00382	ATPases associated with a variety of cellular activities
CF65_RS09245	SM01118	CF65_RS09245
CF65_RS09260	SM00287	Bacterial SH3 domain homologues
CF65_RS09280	SM01400	CF65_RS09280
CF65_RS09370	SM01323	CF65_RS09370
CF65_RS09400	SM00382	ATPases associated with a variety of cellular activities
CF65_RS09470	SM00382	ATPases associated with a variety of cellular activities
CF65_RS09605	SM00382	ATPases associated with a variety of cellular activities
CF65_RS09610	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CF65_RS09675	SM00479	CF65_RS09675
CF65_RS09690	SM00729	Elongator protein 3, MiaB family, Radical SAM
CF65_RS09755	SM00382	ATPases associated with a variety of cellular activities
CF65_RS09760	SM00382	ATPases associated with a variety of cellular activities
CF65_RS09765	SM00448	cheY-homologous receiver domain
CF65_RS09765	SM00862	Transcriptional regulatory protein, C terminal
CF65_RS09800	SM00316	Ribosomal protein S1-like RNA-binding domain
CF65_RS09805	SM00363	S4 RNA-binding domain
CF65_RS09885	SM00925	MltA specific insert domain
CF65_RS09930	SM00904	Riboflavin kinase
CF65_RS09995	SM00841	Elongation factor P, C-terminal
CF65_RS09995	SM01185	CF65_RS09995
CF65_RS10025	SM00563	Phosphate acyltransferases
CF65_RS10095	SM00986	Uracil DNA glycosylase superfamily
CF65_RS10095	SM00987	UreE urease accessory protein, C-terminal domain 
CF65_RS10115	SM00358	Double-stranded RNA binding motif
CF65_RS10115	SM00535	Ribonuclease III family
