NJ8700_RS00005	SM00320	WD40 repeats
NJ8700_RS00020	SM00870	NJ8700_RS00020
NJ8700_RS00030	SM00028	Tetratricopeptide repeats
NJ8700_RS00035	SM00530	Helix-turn-helix XRE-family like proteins 
NJ8700_RS00080	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS00080	SM00464	Found in ATP-dependent protease La (LON)
NJ8700_RS00105	SM00919	Malic enzyme, NAD binding domain
NJ8700_RS00105	SM01274	NJ8700_RS00105
NJ8700_RS00110	SM00363	S4 RNA-binding domain
NJ8700_RS00120	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS00205	SM00028	Tetratricopeptide repeats
NJ8700_RS00220	SM00460	Transglutaminase/protease-like homologues
NJ8700_RS00250	SM00480	DNA polymerase III beta subunit
NJ8700_RS00255	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS00255	SM00760	Bacterial dnaA protein helix-turn-helix domain
NJ8700_RS00300	SM00481	DNA polymerase alpha chain like domain
NJ8700_RS00310	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
NJ8700_RS00350	SM00357	Cold shock protein domain
NJ8700_RS00395	SM00729	Elongator protein 3, MiaB family, Radical SAM
NJ8700_RS00415	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
NJ8700_RS00430	SM00878	Biotin carboxylase C-terminal domain
NJ8700_RS00445	SM00358	Double-stranded RNA binding motif
NJ8700_RS00445	SM00535	Ribonuclease III family
NJ8700_RS00465	SM00986	Uracil DNA glycosylase superfamily
NJ8700_RS00465	SM00987	UreE urease accessory protein, C-terminal domain 
NJ8700_RS00540	SM00563	Phosphate acyltransferases
NJ8700_RS00570	SM00841	Elongation factor P, C-terminal
NJ8700_RS00570	SM01185	NJ8700_RS00570
NJ8700_RS00615	SM00244	prohibitin homologues
NJ8700_RS00620	SM00244	prohibitin homologues
NJ8700_RS00665	SM01130	NJ8700_RS00665
NJ8700_RS00685	SM01230	NJ8700_RS00685
NJ8700_RS00695	SM00927	DNA mismatch repair enzyme MutH
NJ8700_RS00735	SM00422	helix_turn_helix, mercury resistance
NJ8700_RS00755	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS00755	SM00994	ClpX C4-type zinc finger
NJ8700_RS00755	SM01086	C-terminal, D2-small domain, of ClpB protein
NJ8700_RS00870	SM00487	DEAD-like helicases superfamily
NJ8700_RS00870	SM00490	helicase superfamily c-terminal domain
NJ8700_RS00870	SM00982	NJ8700_RS00870
NJ8700_RS00870	SM01058	CarD-like/TRCF domain
NJ8700_RS00890	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS00895	SM00062	Bacterial periplasmic substrate-binding proteins
NJ8700_RS00895	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NJ8700_RS00910	SM00062	Bacterial periplasmic substrate-binding proteins
NJ8700_RS00990	SM00842	Cell division protein FtsA
NJ8700_RS00995	SM00864	Tubulin/FtsZ family, GTPase domain
NJ8700_RS00995	SM00865	Tubulin/FtsZ family, C-terminal domain
NJ8700_RS01005	SM00830	Chorismate mutase type II
NJ8700_RS01015	SM00387	Histidine kinase-like ATPases
NJ8700_RS01055	SM00981	NJ8700_RS01055
NJ8700_RS01075	SM00479	NJ8700_RS01075
NJ8700_RS01110	SM00764	Citrate lyase ligase C-terminal domain
NJ8700_RS01115	SM00116	Domain in cystathionine beta-synthase and other proteins.
NJ8700_RS01115	SM01091	Transporter associated domain
NJ8700_RS01125	SM00316	Ribosomal protein S1-like RNA-binding domain
NJ8700_RS01135	SM00562	NJ8700_RS01135
NJ8700_RS01180	SM00788	Adenylosuccinate synthetase
NJ8700_RS01195	SM00316	Ribosomal protein S1-like RNA-binding domain
NJ8700_RS01225	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS01240	SM01359	NJ8700_RS01240
NJ8700_RS01240	SM01360	NJ8700_RS01240
NJ8700_RS01350	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS01365	SM01400	NJ8700_RS01365
NJ8700_RS01385	SM00287	Bacterial SH3 domain homologues
NJ8700_RS01400	SM01118	NJ8700_RS01400
NJ8700_RS01405	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS01410	SM00344	helix_turn_helix ASNC type
NJ8700_RS01415	SM00843	NJ8700_RS01415
NJ8700_RS01425	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS01445	SM00487	DEAD-like helicases superfamily
NJ8700_RS01505	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NJ8700_RS01505	SM00866	NJ8700_RS01505
NJ8700_RS01555	SM00316	Ribosomal protein S1-like RNA-binding domain
NJ8700_RS01560	SM00411	bacterial (prokaryotic) histone like domain
NJ8700_RS01570	SM00028	Tetratricopeptide repeats
NJ8700_RS01590	SM00434	DNA Topoisomerase IV
NJ8700_RS01660	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS01680	SM00671	Sel1-like repeats.
NJ8700_RS01685	SM00316	Ribosomal protein S1-like RNA-binding domain
NJ8700_RS01685	SM00357	Cold shock protein domain
NJ8700_RS01685	SM00955	NJ8700_RS01685
NJ8700_RS01730	SM00463	Small MutS-related domain
NJ8700_RS01745	SM00851	MGS-like domain
NJ8700_RS01770	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS01825	SM00849	Metallo-beta-lactamase superfamily
NJ8700_RS01915	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS01935	SM00945	ProQ/FINO family
NJ8700_RS01940	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NJ8700_RS01940	SM00245	tail specific protease
NJ8700_RS01955	SM00849	Metallo-beta-lactamase superfamily
NJ8700_RS01960	SM00861	Transketolase, pyrimidine binding domain
NJ8700_RS01975	SM00881	CoA binding domain
NJ8700_RS02025	SM00448	cheY-homologous receiver domain
NJ8700_RS02025	SM00862	Transcriptional regulatory protein, C terminal
NJ8700_RS02030	SM00387	Histidine kinase-like ATPases
NJ8700_RS02030	SM00388	His Kinase A (phosphoacceptor) domain
NJ8700_RS02060	SM00977	TilS substrate C-terminal domain
NJ8700_RS02075	SM00244	prohibitin homologues
NJ8700_RS02160	SM00530	Helix-turn-helix XRE-family like proteins 
NJ8700_RS02230	SM00507	HNH nucleases
NJ8700_RS02400	SM00116	Domain in cystathionine beta-synthase and other proteins.
NJ8700_RS02400	SM01240	NJ8700_RS02400
NJ8700_RS02430	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS02435	SM00729	Elongator protein 3, MiaB family, Radical SAM
NJ8700_RS02435	SM00876	Biotin and Thiamin Synthesis associated domain
NJ8700_RS02440	SM00487	DEAD-like helicases superfamily
NJ8700_RS02460	SM00612	NJ8700_RS02460
NJ8700_RS02490	SM01130	NJ8700_RS02490
NJ8700_RS02560	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS02560	SM00487	DEAD-like helicases superfamily
NJ8700_RS02560	SM00490	helicase superfamily c-terminal domain
NJ8700_RS02560	SM00847	Helicase associated domain (HA2)  Add an annotation
NJ8700_RS02580	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS02650	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NJ8700_RS02710	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS02715	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS02775	SM00853	MutL C terminal dimerisation domain
NJ8700_RS02775	SM01340	NJ8700_RS02775
NJ8700_RS02780	SM00257	Lysin motif
NJ8700_RS02780	SM00646	NJ8700_RS02780
NJ8700_RS02800	SM00479	NJ8700_RS02800
NJ8700_RS02850	SM00014	Acid phosphatase homologues
NJ8700_RS02875	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS02950	SM00830	Chorismate mutase type II
NJ8700_RS02975	SM00095	Transthyretin
NJ8700_RS03035	SM01321	NJ8700_RS03035
NJ8700_RS03045	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS03065	SM01018	B12 binding domain
NJ8700_RS03075	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS03090	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS03095	SM01005	Alanine racemase, C-terminal domain
NJ8700_RS03165	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS03200	SM00947	Carbonic anhydrase
NJ8700_RS03205	SM00749	bacterial OsmY and nodulation domain
NJ8700_RS03265	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NJ8700_RS03295	SM00861	Transketolase, pyrimidine binding domain
NJ8700_RS03330	SM00855	Phosphoglycerate mutase family
NJ8700_RS03335	SM00155	Phospholipase D. Active site motifs.
NJ8700_RS03375	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS03400	SM00642	Alpha-amylase domain
NJ8700_RS03405	SM00642	Alpha-amylase domain
NJ8700_RS03460	SM00563	Phosphate acyltransferases
NJ8700_RS03495	SM00100	Cyclic nucleotide-monophosphate binding domain
NJ8700_RS03495	SM00419	helix_turn_helix, cAMP Regulatory protein
NJ8700_RS03510	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
NJ8700_RS03510	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
NJ8700_RS03510	SM00493	NJ8700_RS03510
NJ8700_RS03520	SM00481	DNA polymerase alpha chain like domain
NJ8700_RS03540	SM01001	AIR carboxylase
NJ8700_RS03560	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS03585	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS03620	SM00411	bacterial (prokaryotic) histone like domain
NJ8700_RS03625	SM00873	B3/4 domain
NJ8700_RS03625	SM00874	tRNA synthetase B5 domain
NJ8700_RS03625	SM00896	Ferredoxin-fold anticodon binding domain
NJ8700_RS03645	SM00116	Domain in cystathionine beta-synthase and other proteins.
NJ8700_RS03775	SM01133	NJ8700_RS03775
NJ8700_RS03795	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS03850	SM00729	Elongator protein 3, MiaB family, Radical SAM
NJ8700_RS03885	SM00981	NJ8700_RS03885
NJ8700_RS03905	SM00642	Alpha-amylase domain
NJ8700_RS03935	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS03975	SM00357	Cold shock protein domain
NJ8700_RS04010	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS04025	SM00528	Domain in histone-like proteins of HNS family
NJ8700_RS04075	SM00354	helix_turn _helix lactose operon repressor
NJ8700_RS04090	SM00354	helix_turn _helix lactose operon repressor
NJ8700_RS04105	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS04125	SM01103	NJ8700_RS04125
NJ8700_RS04145	SM00852	Probable molybdopterin binding domain
NJ8700_RS04165	SM00642	Alpha-amylase domain
NJ8700_RS04170	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS04195	SM00642	Alpha-amylase domain
NJ8700_RS04265	SM00421	helix_turn_helix, Lux Regulon
NJ8700_RS04280	SM00642	Alpha-amylase domain
NJ8700_RS04340	SM00849	Metallo-beta-lactamase superfamily
NJ8700_RS04345	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS04365	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NJ8700_RS04365	SM00465	GIY-YIG type nucleases (URI domain)
NJ8700_RS04375	SM00354	helix_turn _helix lactose operon repressor
NJ8700_RS04385	SM01038	Beta galactosidase small chain
NJ8700_RS04405	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS04420	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
NJ8700_RS04420	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
NJ8700_RS04430	SM00363	S4 RNA-binding domain
NJ8700_RS04440	SM00640	Glycosyl hydrolases family 32
NJ8700_RS04465	SM00316	Ribosomal protein S1-like RNA-binding domain
NJ8700_RS04515	SM00344	helix_turn_helix ASNC type
NJ8700_RS04570	SM00937	NJ8700_RS04570
NJ8700_RS04585	SM00836	DALR anticodon binding domain
NJ8700_RS04585	SM01016	Arginyl tRNA synthetase N terminal dom
NJ8700_RS04600	SM00507	HNH nucleases
NJ8700_RS04605	SM00271	DnaJ molecular chaperone homology domain
NJ8700_RS04750	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
NJ8700_RS04750	SM00493	NJ8700_RS04750
NJ8700_RS04830	SM01235	NJ8700_RS04830
NJ8700_RS04835	SM00341	Helicase and RNase D C-terminal
NJ8700_RS04835	SM00474	3'-5' exonuclease
NJ8700_RS04855	SM00487	DEAD-like helicases superfamily
NJ8700_RS04855	SM00491	NJ8700_RS04855
NJ8700_RS04875	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS04895	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS04900	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS04980	SM00354	helix_turn _helix lactose operon repressor
NJ8700_RS04990	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
NJ8700_RS05010	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS05030	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NJ8700_RS05035	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NJ8700_RS05100	SM00900	NJ8700_RS05100
NJ8700_RS05110	SM00478	endonuclease III
NJ8700_RS05110	SM00525	NJ8700_RS05110
NJ8700_RS05120	SM00861	Transketolase, pyrimidine binding domain
NJ8700_RS05140	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS05145	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NJ8700_RS05175	SM00318	Staphylococcal nuclease homologues
NJ8700_RS05215	SM00244	prohibitin homologues
NJ8700_RS05245	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS05255	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
NJ8700_RS05360	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS05405	SM00937	NJ8700_RS05405
NJ8700_RS05420	SM00271	DnaJ molecular chaperone homology domain
NJ8700_RS05425	SM00173	Ras subfamily of RAS small GTPases
NJ8700_RS05470	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS05510	SM00271	DnaJ molecular chaperone homology domain
NJ8700_RS05555	SM00487	DEAD-like helicases superfamily
NJ8700_RS05555	SM00490	helicase superfamily c-terminal domain
NJ8700_RS05560	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NJ8700_RS05565	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS05575	SM00387	Histidine kinase-like ATPases
NJ8700_RS05575	SM00433	TopoisomeraseII
NJ8700_RS05580	SM00434	DNA Topoisomerase IV
NJ8700_RS05605	SM00530	Helix-turn-helix XRE-family like proteins 
NJ8700_RS05625	SM01022	NJ8700_RS05625
NJ8700_RS05680	SM01007	Class II Aldolase and Adducin N-terminal domain
NJ8700_RS05690	SM00420	helix_turn_helix, Deoxyribose operon repressor
NJ8700_RS05690	SM01134	NJ8700_RS05690
NJ8700_RS05710	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
NJ8700_RS05760	SM00354	helix_turn _helix lactose operon repressor
NJ8700_RS05770	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS05780	SM00073	Histidine Phosphotransfer domain
NJ8700_RS05780	SM00387	Histidine kinase-like ATPases
NJ8700_RS05780	SM00388	His Kinase A (phosphoacceptor) domain
NJ8700_RS05780	SM00448	cheY-homologous receiver domain
NJ8700_RS05785	SM00825	Beta-ketoacyl synthase
NJ8700_RS05865	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS05880	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
NJ8700_RS05880	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
NJ8700_RS05880	SM00493	NJ8700_RS05880
NJ8700_RS05885	SM00493	NJ8700_RS05885
NJ8700_RS05915	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS05960	SM00894	Excalibur calcium-binding domain
NJ8700_RS05975	SM01323	NJ8700_RS05975
NJ8700_RS06055	SM00671	Sel1-like repeats.
NJ8700_RS06075	SM01209	NJ8700_RS06075
NJ8700_RS06075	SM01210	NJ8700_RS06075
NJ8700_RS06080	SM00798	AICARFT/IMPCHase bienzyme
NJ8700_RS06080	SM00851	MGS-like domain
NJ8700_RS06195	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS06200	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NJ8700_RS06265	SM00479	NJ8700_RS06265
NJ8700_RS06280	SM00729	Elongator protein 3, MiaB family, Radical SAM
NJ8700_RS06345	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS06350	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS06355	SM00448	cheY-homologous receiver domain
NJ8700_RS06355	SM00862	Transcriptional regulatory protein, C terminal
NJ8700_RS06390	SM00316	Ribosomal protein S1-like RNA-binding domain
NJ8700_RS06395	SM00363	S4 RNA-binding domain
NJ8700_RS06465	SM00925	MltA specific insert domain
NJ8700_RS06535	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
NJ8700_RS06540	SM00072	Guanylate kinase homologues.
NJ8700_RS06545	SM01409	NJ8700_RS06545
NJ8700_RS06550	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
NJ8700_RS06550	SM00954	Region found in RelA / SpoT proteins
NJ8700_RS06555	SM00487	DEAD-like helicases superfamily
NJ8700_RS06555	SM00490	helicase superfamily c-terminal domain
NJ8700_RS06565	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
NJ8700_RS06585	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS06600	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS06690	SM00984	UDP binding domain
NJ8700_RS06695	SM00487	DEAD-like helicases superfamily
NJ8700_RS06695	SM00490	helicase superfamily c-terminal domain
NJ8700_RS06700	SM00028	Tetratricopeptide repeats
NJ8700_RS06705	SM00316	Ribosomal protein S1-like RNA-binding domain
NJ8700_RS06705	SM00322	K homology RNA-binding domain
NJ8700_RS06715	SM00644	NJ8700_RS06715
NJ8700_RS06790	SM01211	NJ8700_RS06790
NJ8700_RS06835	SM00840	NJ8700_RS06835
NJ8700_RS06840	SM00729	Elongator protein 3, MiaB family, Radical SAM
NJ8700_RS06855	SM00936	Penicillin-binding protein 5, C-terminal domain 
NJ8700_RS06885	SM00487	DEAD-like helicases superfamily
NJ8700_RS06885	SM00490	helicase superfamily c-terminal domain
NJ8700_RS06890	SM00357	Cold shock protein domain
NJ8700_RS06890	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS06890	SM00959	Rho termination factor, N-terminal domain
NJ8700_RS06905	SM00822	NJ8700_RS06905
NJ8700_RS06910	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
NJ8700_RS06970	SM00195	Dual specificity phosphatase, catalytic domain
NJ8700_RS06990	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
NJ8700_RS07010	SM01091	Transporter associated domain
NJ8700_RS07045	SM00938	Nitrogen regulatory protein P-II
NJ8700_RS07085	SM00852	Probable molybdopterin binding domain
NJ8700_RS07095	SM00563	Phosphate acyltransferases
NJ8700_RS07135	SM00935	Outer membrane protein (OmpH-like)
NJ8700_RS07145	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
NJ8700_RS07180	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS07185	SM00917	LeuA allosteric (dimerisation) domain
NJ8700_RS07190	SM01329	NJ8700_RS07190
NJ8700_RS07240	SM01091	Transporter associated domain
NJ8700_RS07250	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS07250	SM00962	SRP54-type protein, GTPase domain
NJ8700_RS07250	SM00963	SRP54-type protein, helical bundle domain
NJ8700_RS07260	SM00563	Phosphate acyltransferases
NJ8700_RS07305	SM00838	Elongation factor G C-terminus
NJ8700_RS07305	SM00889	Elongation factor G, domain IV
NJ8700_RS07315	SM00316	Ribosomal protein S1-like RNA-binding domain
NJ8700_RS07315	SM00732	Likely ribonuclease with RNase H fold.
NJ8700_RS07370	SM00421	helix_turn_helix, Lux Regulon
NJ8700_RS07370	SM00448	cheY-homologous receiver domain
NJ8700_RS07430	SM00900	NJ8700_RS07430
NJ8700_RS07480	SM00478	endonuclease III
NJ8700_RS07480	SM00525	NJ8700_RS07480
NJ8700_RS07495	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS07500	SM00342	helix_turn_helix, arabinose operon control protein
NJ8700_RS07555	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS07565	SM00271	DnaJ molecular chaperone homology domain
NJ8700_RS07620	SM00954	Region found in RelA / SpoT proteins
NJ8700_RS07645	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS07650	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS07650	SM00962	SRP54-type protein, GTPase domain
NJ8700_RS07650	SM00963	SRP54-type protein, helical bundle domain
NJ8700_RS07690	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS07765	SM00883	Chaperonin 10 Kd subunit
NJ8700_RS07790	SM00859	Semialdehyde dehydrogenase, NAD binding domain
NJ8700_RS07825	SM00563	Phosphate acyltransferases
NJ8700_RS07890	SM00825	Beta-ketoacyl synthase
NJ8700_RS07900	SM00822	NJ8700_RS07900
NJ8700_RS07905	SM00825	Beta-ketoacyl synthase
NJ8700_RS07910	SM00155	Phospholipase D. Active site motifs.
NJ8700_RS07915	SM00967	RNA 2'-O ribose methyltransferase substrate binding
NJ8700_RS08005	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS08090	SM00530	Helix-turn-helix XRE-family like proteins 
NJ8700_RS08105	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NJ8700_RS08110	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS08110	SM01086	C-terminal, D2-small domain, of ClpB protein
NJ8700_RS08165	SM01321	NJ8700_RS08165
NJ8700_RS08220	SM01192	NJ8700_RS08220
NJ8700_RS08220	SM01193	NJ8700_RS08220
NJ8700_RS08225	SM00732	Likely ribonuclease with RNase H fold.
NJ8700_RS08255	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
NJ8700_RS08295	SM00448	cheY-homologous receiver domain
NJ8700_RS08295	SM00862	Transcriptional regulatory protein, C terminal
NJ8700_RS08300	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NJ8700_RS08300	SM00387	Histidine kinase-like ATPases
NJ8700_RS08300	SM00388	His Kinase A (phosphoacceptor) domain
NJ8700_RS08330	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS08345	SM00420	helix_turn_helix, Deoxyribose operon repressor
NJ8700_RS08345	SM01134	NJ8700_RS08345
NJ8700_RS08350	SM00411	bacterial (prokaryotic) histone like domain
NJ8700_RS08370	SM00663	RNA polymerase I subunit A N-terminus
NJ8700_RS08395	SM00649	Ribosomal protein L11/L12
NJ8700_RS08400	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
NJ8700_RS08400	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
NJ8700_RS08415	SM00530	Helix-turn-helix XRE-family like proteins 
NJ8700_RS08500	SM00028	Tetratricopeptide repeats
NJ8700_RS08520	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
NJ8700_RS08520	SM00534	ATPase domain of DNA mismatch repair MUTS family
NJ8700_RS08525	SM00487	DEAD-like helicases superfamily
NJ8700_RS08525	SM00490	helicase superfamily c-terminal domain
NJ8700_RS08540	SM00487	DEAD-like helicases superfamily
NJ8700_RS08540	SM00490	helicase superfamily c-terminal domain
NJ8700_RS08610	SM00869	Autotransporter beta-domain
NJ8700_RS08815	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
NJ8700_RS08815	SM00474	3'-5' exonuclease
NJ8700_RS08815	SM00475	5'-3' exonuclease
NJ8700_RS08815	SM00482	DNA polymerase A domain
NJ8700_RS08860	SM01266	NJ8700_RS08860
NJ8700_RS08895	SM01133	NJ8700_RS08895
NJ8700_RS08900	SM00420	helix_turn_helix, Deoxyribose operon repressor
NJ8700_RS08900	SM01134	NJ8700_RS08900
NJ8700_RS08905	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS08930	SM00671	Sel1-like repeats.
NJ8700_RS08985	SM00861	Transketolase, pyrimidine binding domain
NJ8700_RS09005	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS09010	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS09085	SM00257	Lysin motif
NJ8700_RS09100	SM00422	helix_turn_helix, mercury resistance
NJ8700_RS09190	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS09195	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS09205	SM00450	Rhodanese Homology Domain
NJ8700_RS09220	SM00971	Serine acetyltransferase, N-terminal
NJ8700_RS09245	SM01228	NJ8700_RS09245
NJ8700_RS09290	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS09365	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
NJ8700_RS09375	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
NJ8700_RS09375	SM00387	Histidine kinase-like ATPases
NJ8700_RS09435	SM01219	NJ8700_RS09435
NJ8700_RS09440	SM00341	Helicase and RNase D C-terminal
NJ8700_RS09440	SM00487	DEAD-like helicases superfamily
NJ8700_RS09440	SM00490	helicase superfamily c-terminal domain
NJ8700_RS09440	SM00956	NJ8700_RS09440
NJ8700_RS09445	SM00387	Histidine kinase-like ATPases
NJ8700_RS09445	SM00433	TopoisomeraseII
NJ8700_RS09485	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS09495	SM00062	Bacterial periplasmic substrate-binding proteins
NJ8700_RS09495	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
NJ8700_RS09540	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
NJ8700_RS09540	SM00091	PAS domain
NJ8700_RS09575	SM00506	Appr-1"-p processing enzyme
NJ8700_RS09620	SM01004	Delta-aminolevulinic acid dehydratase
NJ8700_RS09660	SM00363	S4 RNA-binding domain
NJ8700_RS09675	SM00342	helix_turn_helix, arabinose operon control protein
NJ8700_RS09725	SM01350	NJ8700_RS09725
NJ8700_RS09760	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS09760	SM01086	C-terminal, D2-small domain, of ClpB protein
NJ8700_RS09780	SM00855	Phosphoglycerate mutase family
NJ8700_RS09855	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS09855	SM01086	C-terminal, D2-small domain, of ClpB protein
NJ8700_RS09890	SM00382	ATPases associated with a variety of cellular activities
NJ8700_RS09890	SM00930	NJ8700_RS09890
NJ8700_RS09970	SM00226	Low molecular weight phosphatase family
NJ8700_RS09980	SM00729	Elongator protein 3, MiaB family, Radical SAM
NJ8700_RS10010	SM00344	helix_turn_helix ASNC type
NJ8700_RS10050	SM00344	helix_turn_helix ASNC type
NJ8700_RS10055	SM01403	NJ8700_RS10055
NJ8700_RS10075	SM01382	NJ8700_RS10075
NJ8700_RS10075	SM01383	NJ8700_RS10075
NJ8700_RS10090	SM00322	K homology RNA-binding domain
NJ8700_RS10110	SM01374	NJ8700_RS10110
NJ8700_RS10115	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
NJ8700_RS10175	SM00363	S4 RNA-binding domain
NJ8700_RS10175	SM01390	NJ8700_RS10175
NJ8700_RS10180	SM00662	RNA polymerases D
NJ8700_RS10215	SM00650	Ribosomal RNA adenine dimethylases
NJ8700_RS10260	SM00957	SecA DEAD-like domain
NJ8700_RS10260	SM00958	SecA preprotein cross-linking domain
NJ8700_RS10275	SM00422	helix_turn_helix, mercury resistance
NJ8700_RS10345	SM00450	Rhodanese Homology Domain
NJ8700_RS10405	SM00100	Cyclic nucleotide-monophosphate binding domain
NJ8700_RS10405	SM00419	helix_turn_helix, cAMP Regulatory protein
NJ8700_RS10445	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
NJ8700_RS10445	SM01232	NJ8700_RS10445
NJ8700_RS10495	SM00487	DEAD-like helicases superfamily
NJ8700_RS10495	SM00490	helicase superfamily c-terminal domain
NJ8700_RS10535	SM01152	NJ8700_RS10535
NJ8700_RS10560	SM00363	S4 RNA-binding domain
NJ8700_RS10585	SM01011	Aminopeptidase P, N-terminal domain
NJ8700_RS10635	SM00316	Ribosomal protein S1-like RNA-binding domain
NJ8700_RS10635	SM00357	Cold shock protein domain
NJ8700_RS10635	SM00955	NJ8700_RS10635
NJ8700_RS10640	SM00967	RNA 2'-O ribose methyltransferase substrate binding
NJ8700_RS10695	SM00450	Rhodanese Homology Domain
NJ8700_RS10710	SM00420	helix_turn_helix, Deoxyribose operon repressor
NJ8700_RS10710	SM01134	NJ8700_RS10710
NJ8700_RS10750	SM00885	D5 N terminal like
NJ8700_RS10790	SM00400	zinc finger
NJ8700_RS10790	SM00493	NJ8700_RS10790
NJ8700_RS10790	SM00766	DNA primase DnaG DnaB-binding
NJ8700_RS10815	SM00278	Helix-hairpin-helix DNA-binding motif class 1
NJ8700_RS10815	SM00292	breast cancer carboxy-terminal domain
NJ8700_RS10815	SM00532	Ligase N family
NJ8700_RS10820	SM00771	ZipA, C-terminal domain (FtsZ-binding)
NJ8700_RS10835	SM00986	Uracil DNA glycosylase superfamily
NJ8700_RS10835	SM00987	UreE urease accessory protein, C-terminal domain 
NJ8700_RS10885	SM00904	Riboflavin kinase
NJ8700_RS10920	SM00729	Elongator protein 3, MiaB family, Radical SAM
NJ8700_RS10940	SM00257	Lysin motif
NJ8700_RS10945	SM01207	NJ8700_RS10945
NJ8700_RS10950	SM00905	Dihydroneopterin aldolase
NJ8700_RS10955	SM00062	Bacterial periplasmic substrate-binding proteins
NJ8700_RS10970	SM00345	helix_turn_helix gluconate operon transcriptional repressor
NJ8700_RS10995	SM01387	NJ8700_RS10995
NJ8700_RS11005	SM00731	SprT homologues.
