locus-tag	class	description
Atu0001	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
Atu0002	COG0424	maF-like protein
Atu0003	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Atu0004	COG0237	dephospho-CoA kinase activity
Atu0006	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
Atu0007	COG3030	protein affecting phage T7 exclusion by the F plasmid
Atu0009	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
Atu0014	COG0179	Fumarylacetoacetate (FAA) hydrolase
Atu0017	COG0135	phosphoribosylanthranilate isomerase activity
Atu0018	COG0133	tryptophan synthase activity
Atu0019	COG0159	tryptophan synthase activity
Atu0020	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
Atu0025	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
Atu0027	COG2205	protein histidine kinase activity
Atu0029	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
Atu0030	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
Atu0031	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Atu0031	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
Atu0032	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
Atu0033	COG0642	Histidine kinase
Atu0034	COG0745	RESPONSE REGULATOR receiver
Atu0035	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
Atu0037	COG1072	(Pantothenic acid kinase))
Atu0038	COG0140	phosphoribosyl-ATP diphosphatase activity
Atu0039	COG0107	imidazoleglycerol-phosphate synthase activity
Atu0040	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
Atu0041	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
Atu0043	COG0131	Imidazoleglycerol-phosphate dehydratase
Atu0044	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
Atu0045	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
Atu0047	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
Atu0050	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
Atu0052	COG1643	Atp-dependent helicase
Atu0061	COG0514	ATP-dependent DNA helicase (RecQ)
Atu0066	COG1072	(Pantothenic acid kinase))
Atu0069	COG1780	Probably involved in ribonucleotide reductase function
Atu0073	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
Atu0079	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Atu0081	COG2813	Specifically methylates the guanine in position
Atu0082	COG1185	polyribonucleotide nucleotidyltransferase activity
Atu0084	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
Atu0085	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
Atu0086	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
Atu0087	COG3064	Membrane
Atu0087	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
Atu0090	COG0779	Required for maturation of 30S ribosomal subunits
Atu0091	COG2814	Major facilitator Superfamily
Atu0092	COG2951	lytic endotransglycosylase activity
Atu0093	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
Atu0095	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
Atu0096	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Atu0098	COG2816	NAD+ diphosphatase activity
Atu0099	COG1605	Chorismate mutase
Atu0099	COG0077	Prephenate dehydratase
Atu0100	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
Atu0101	COG3474	cytochrome
Atu0103	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Atu0104	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Atu0106	COG1278	Cold shock
Atu0108	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Atu0110	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Atu0110	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Atu0112	COG0333	Belongs to the bacterial ribosomal protein bL32 family
Atu0119	COG2900	Belongs to the SlyX family
Atu0121	COG0484	heat shock protein binding
Atu0122	COG0443	Heat shock 70 kDa protein
Atu0125	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Atu0126	COG1744	ABC transporter substrate-binding protein PnrA-like
Atu0127	COG3845	ABC transporter
Atu0128	COG1079	Belongs to the binding-protein-dependent transport system permease family
Atu0129	COG1079	Belongs to the binding-protein-dependent transport system permease family
Atu0130	COG0295	cytidine deaminase activity
Atu0131	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
Atu0132	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
Atu0133	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
Atu0135	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
Atu0136	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
Atu0137	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
Atu0139	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
Atu0140	COG1845	cytochrome c oxidase, subunit III
Atu0141	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Atu0143	COG0477	Major facilitator Superfamily
Atu0145	COG0069	glutamate synthase activity
Atu0145	COG0067	glutamate synthase
Atu0145	COG0070	glutamate synthase
Atu0146	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
Atu0149	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
Atu0151	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Atu0158	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Atu0162	COG0848	biopolymer transport protein
Atu0164	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
Atu0168	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
Atu0169	COG3454	Phosphonate metabolism
Atu0170	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
Atu0171	COG3639	organic phosphonate transmembrane transporter activity
Atu0172	COG3639	organic phosphonate transmembrane transporter activity
Atu0173	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
Atu0174	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
Atu0176	COG4778	phosphonate C-P lyase system protein PhnL
Atu0177	COG4107	phosphonate C-P lyase system protein PhnK
Atu0178	COG3627	carbon phosphorus lyase activity
Atu0179	COG3626	phosphonate metabolism
Atu0180	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
Atu0181	COG3624	Phosphonate C-P lyase system protein PhnG
Atu0182	COG2188	Transcriptional regulator
Atu0183	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
Atu0184	COG0837	glucose binding
Atu0185	COG1803	Methylglyoxal synthase
Atu0186	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
Atu0187	COG4166	transmembrane transport
Atu0188	COG4174	ABC transporter (Permease)
Atu0189	COG4239	(ABC) transporter, permease
Atu0190	COG4172	Belongs to the ABC transporter superfamily
Atu0193	COG0174	glutamine synthetase
Atu0194	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Atu0195	COG3265	gluconokinase activity
Atu0196	COG1174	glycine betaine transport
Atu0197	COG1125	glycine betaine transport
Atu0198	COG1174	glycine betaine transport
Atu0199	COG1732	Glycine betaine
Atu0201	COG1959	2 iron, 2 sulfur cluster binding
Atu0202	COG1840	ABC-type Fe3 transport system, periplasmic component
Atu0204	COG4269	membrane
Atu0208	COG0697	spore germination
Atu0211	COG0791	NLP P60 protein
Atu0213	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
Atu0214	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
Atu0221	COG4964	Belongs to the GSP D family
Atu0232	COG3422	double-strand break repair
Atu0233	COG3757	hydrolase, family 25
Atu0234	COG0697	spore germination
Atu0235	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Atu0241	COG0481	GTPase activity
Atu0242	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Atu0245	COG1396	sequence-specific DNA binding
Atu0248	COG2169	Transcriptional regulator
Atu0248	COG1917	Cupin 2, conserved barrel domain protein
Atu0249	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
Atu0254	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
Atu0255	COG0291	Belongs to the bacterial ribosomal protein bL35 family
Atu0256	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
Atu0258	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
Atu0259	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Atu0259	COG0072	phenylalanine-tRNA ligase activity
Atu0260	COG0667	Aldo Keto reductase
Atu0263	COG0667	Aldo Keto reductase
Atu0264	COG4977	sequence-specific DNA binding
Atu0269	COG1570	exodeoxyribonuclease VII activity
Atu0270	COG4948	Mandelate Racemase Muconate Lactonizing
Atu0272	COG1846	Transcriptional regulator
Atu0273	COG0697	spore germination
Atu0274	COG2309	aminopeptidase activity
Atu0275	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Atu0276	COG1393	Belongs to the ArsC family
Atu0279	COG1309	transcriptional regulator
Atu0281	COG0518	GMP synthase (glutamine-hydrolyzing) activity
Atu0281	COG0519	Catalyzes the synthesis of GMP from XMP
Atu0284	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
Atu0290	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
Atu0292	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
Atu0294	COG1968	undecaprenyl-diphosphatase activity
Atu0298	COG0284	orotidine-5'-phosphate decarboxylase activity
Atu0300	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
Atu0302	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
Atu0303	COG0792	nuclease activity
Atu0306	COG1175	transmembrane transport
Atu0307	COG0395	ABC-type sugar transport system, permease component
Atu0308	COG3842	ATPase activity
Atu0310	COG0189	ligase activity
Atu0311	COG0606	chelatase, subunit chli
Atu0312	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Atu0313	COG1280	lysine exporter protein (LysE YggA)
Atu0314	COG0756	dUTP diphosphatase activity
Atu0315	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
Atu0316	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Atu0319	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
Atu0320	COG2226	methyltransferase
Atu0321	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
Atu0322	COG1024	Enoyl-CoA hydratase
Atu0323	COG0268	Binds directly to 16S ribosomal RNA
Atu0324	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
Atu0325	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Atu0326	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
Atu0327	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
Atu0328	COG1420	regulation of RNA biosynthetic process
Atu0329	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
Atu0330	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Atu0331	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
Atu0333	COG1137	ATPase activity
Atu0334	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
Atu0337	COG0616	signal peptide processing
Atu0338	COG0776	regulation of translation
Atu0341	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Atu0342	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
Atu0345	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
Atu0346	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
Atu0347	COG0728	peptidoglycan biosynthetic process
Atu0349	COG0180	Tryptophanyl-tRNA synthetase
Atu0351	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
Atu0356	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Atu0357	COG1702	phosphate starvation-inducible protein PhoH
Atu0358	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
Atu0360	COG0815	Transfers the fatty acyl group on membrane lipoproteins
Atu0361	COG1396	sequence-specific DNA binding
Atu0362	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
Atu0363	COG0220	tRNA (guanine-N7-)-methyltransferase activity
Atu0364	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Atu0366	COG0242	peptide deformylase activity
Atu0367	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
Atu0368	COG0101	tRNA pseudouridine synthase activity
Atu0370	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Atu0371	COG2171	N-acyltransferase activity
Atu0373	COG0840	transmembrane signaling receptor activity
Atu0375	COG0071	Belongs to the small heat shock protein (HSP20) family
Atu0380	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
Atu0383	COG0218	Necessary for normal cell division and for the maintenance of normal septation
Atu0384	COG0706	membrane insertase activity
Atu0385	COG0594	ribonuclease P activity
Atu0387	COG0840	transmembrane signaling receptor activity
Atu0388	COG5002	protein histidine kinase activity
Atu0388	COG3850	Histidine kinase
Atu0390	COG2226	methyltransferase
Atu0391	COG3842	ATPase activity
Atu0392	COG1175	transmembrane transport
Atu0393	COG0395	ABC-type sugar transport system, permease component
Atu0396	COG0427	acetyl-CoA hydrolase
Atu0398	COG3938	Belongs to the proline racemase family
Atu0399	COG0418	dihydroorotase activity
Atu0400	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
Atu0404	COG0166	Belongs to the GPI family
Atu0405	COG0318	PFAM AMP-dependent synthetase and ligase
Atu0406	COG3842	ATPase activity
Atu0407	COG1840	ABC-type Fe3 transport system, periplasmic component
Atu0408	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
Atu0409	COG4774	siderophore transport
Atu0418	COG2326	polyphosphate kinase activity
Atu0419	COG5002	protein histidine kinase activity
Atu0420	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Atu0421	COG0573	inorganic phosphate transmembrane transporter activity
Atu0423	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
Atu0424	COG0704	Plays a role in the regulation of phosphate uptake
Atu0425	COG0745	RESPONSE REGULATOR receiver
Atu0428	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
Atu0429	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
Atu0431	COG2967	ApaG domain
Atu0434	COG0717	Belongs to the dCTP deaminase family
Atu0472	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
Atu0476	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Atu0486	COG0167	dihydroorotate dehydrogenase activity
Atu0489	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Atu0493	COG1959	2 iron, 2 sulfur cluster binding
Atu0494	COG1201	RNA secondary structure unwinding
Atu0498	COG0730	response to heat
Atu0501	COG1960	acyl-CoA dehydrogenase activity
Atu0502	COG0183	Belongs to the thiolase family
Atu0503	COG1250	3-hydroxyacyl-CoA dehydrogenase
Atu0503	COG1024	Enoyl-CoA hydratase
Atu0507	COG1320	monovalent cation:proton antiporter activity
Atu0508	COG2212	antiporter activity
Atu0509	COG1863	multisubunit Na H antiporter MnhE subunit
Atu0510	COG0651	ATP synthesis coupled electron transport
Atu0511	COG1006	Multisubunit Na H antiporter MnhC subunit
Atu0514	COG0840	transmembrane signaling receptor activity
Atu0516	COG0745	RESPONSE REGULATOR receiver
Atu0517	COG0643	Histidine kinase
Atu0517	COG2198	Histidine kinase
Atu0518	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
Atu0519	COG2201	protein-glutamate methylesterase activity
Atu0520	COG0745	RESPONSE REGULATOR receiver
Atu0521	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
Atu0523	COG1766	The M ring may be actively involved in energy transduction
Atu0524	COG2771	luxR family
Atu0526	COG2972	Histidine kinase
Atu0526	COG0840	transmembrane signaling receptor activity
Atu0527	COG2205	protein histidine kinase activity
Atu0527	COG2198	Histidine kinase
Atu0527	COG0784	Response regulator, receiver
Atu0528	COG1970	mechanosensitive ion channel activity
Atu0529	COG0436	Aminotransferase
Atu0533	COG0424	maF-like protein
Atu0534	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Atu0536	COG5328	Belongs to the UPF0262 family
Atu0537	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
Atu0539	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
Atu0542	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Atu0546	COG1338	Plays a role in the flagellum-specific transport system
Atu0548	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
Atu0550	COG1706	bacterial-type flagellum-dependent cell motility
Atu0551	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
Atu0552	COG4786	Flagellar basal body rod
Atu0553	COG1677	Flagellar hook-basal body complex protein FliE
Atu0554	COG1558	bacterial-type flagellum-dependent cell motility
Atu0555	COG1815	bacterial-type flagellum-dependent cell motility
Atu0557	COG1157	protein secretion by the type III secretion system
Atu0558	COG4786	Flagellar basal body rod
Atu0560	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
Atu0561	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Atu0562	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Atu0563	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Atu0564	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
Atu0569	COG1360	Flagellar Motor Protein
Atu0574	COG1749	Flagellar hook protein flgE
Atu0578	COG5443	negative regulation of bacterial-type flagellum assembly
Atu0579	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
Atu0581	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
Atu0589	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
Atu0590	COG1609	Transcriptional regulator
Atu0591	COG1653	transport
Atu0592	COG1175	transmembrane transport
Atu0593	COG0395	ABC-type sugar transport system, permease component
Atu0594	COG0366	Alpha amylase catalytic
Atu0595	COG3842	ATPase activity
Atu0598	COG0129	dihydroxy-acid dehydratase activity
Atu0599	COG0363	glucosamine-6-phosphate deaminase activity
Atu0600	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
Atu0601	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Atu0603	COG2081	HI0933 family
Atu0607	COG2224	Isocitrate lyase
Atu0610	COG3842	ATPase activity
Atu0611	COG1176	ABC-type spermidine putrescine transport system, permease component I
Atu0612	COG1177	transmembrane transport
Atu0614	COG2205	protein histidine kinase activity
Atu0619	COG0248	Ppx GppA phosphatase
Atu0620	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
Atu0621	COG0477	Major facilitator Superfamily
Atu0631	COG0521	Mo-molybdopterin cofactor biosynthetic process
Atu0632	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
Atu0634	COG0142	geranyltranstransferase activity
Atu0639	COG0752	glycyl-tRNA synthetase alpha subunit
Atu0641	COG1704	LemA family
Atu0642	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
Atu0644	COG0751	glycine-tRNA ligase activity
Atu0645	COG1683	Conserved Protein
Atu0646	COG0840	transmembrane signaling receptor activity
Atu0647	COG0151	Belongs to the GarS family
Atu0648	COG2183	response to ionizing radiation
Atu0649	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Atu0651	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
Atu0654	COG0583	DNA-binding transcription factor activity
Atu0658	COG0306	phosphate transporter
Atu0660	COG0561	phosphatase activity
Atu0661	COG0438	transferase activity, transferring glycosyl groups
Atu0662	COG2186	Transcriptional regulator
Atu0664	COG0583	DNA-binding transcription factor activity
Atu0665	COG0277	FAD linked oxidase domain protein
Atu0666	COG0277	FAD linked oxidase domain protein
Atu0667	COG0247	lactate metabolic process
Atu0669	COG1376	ErfK ybiS ycfS ynhG family protein
Atu0670	COG0519	Catalyzes the synthesis of GMP from XMP
Atu0671	COG2855	membrane
Atu0672	COG0583	DNA-binding transcription factor activity
Atu0676	COG0124	histidyl-tRNA synthetase
Atu0678	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
Atu0679	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
Atu0680	COG2259	Doxx family
Atu0682	COG0459	protein refolding
Atu0683	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
Atu0685	COG0196	riboflavin kinase activity
Atu0686	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
Atu0688	COG0590	tRNA wobble adenosine to inosine editing
Atu0689	COG1187	pseudouridine synthase activity
Atu0690	COG0742	ribosomal rna small subunit methyltransferase
Atu0691	COG1752	Esterase of the alpha-beta hydrolase superfamily
Atu0693	COG0312	modulator of DNA gyrase
Atu0694	COG0483	inositol monophosphate 1-phosphatase activity
Atu0697	COG1663	tetraacyldisaccharide 4'-kinase activity
Atu0699	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
Atu0701	COG5001	Diguanylate cyclase
Atu0701	COG3300	MHYT domain
Atu0702	COG3386	PFAM SMP-30 Gluconolaconase
Atu0703	COG0800	Aldolase
Atu0704	COG3734	2-keto-3-deoxy-galactonokinase
Atu0705	COG1028	Short-chain dehydrogenase reductase Sdr
Atu0707	COG2197	response regulator
Atu0708	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Atu0710	COG0598	Magnesium transport protein CorA
Atu0711	COG3158	transport of potassium into the cell
Atu0714	COG0356	it plays a direct role in the translocation of protons across the membrane
Atu0716	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
Atu0717	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
Atu0720	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
Atu0724	COG0009	L-threonylcarbamoyladenylate synthase
Atu0726	COG4638	Rieske (2fe-2S)
Atu0732	COG1960	acyl-CoA dehydrogenase activity
Atu0735	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Atu0736	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
Atu0738	COG0840	transmembrane signaling receptor activity
Atu0745	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
Atu0746	COG1741	Belongs to the pirin family
Atu0747	COG1722	exodeoxyribonuclease VII activity
Atu0748	COG0123	including yeast histone deacetylase and acetoin utilization protein
Atu0749	COG1268	BioY protein
Atu0750	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
Atu0751	COG1122	ATPase activity
Atu0752	COG3214	Protein conserved in bacteria
Atu0753	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Atu0753	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Atu0754	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
Atu0757	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
Atu0760	COG0259	pyridoxamine-phosphate oxidase activity
Atu0763	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Atu0765	COG0312	modulator of DNA gyrase
Atu0768	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Atu0769	COG0109	protoheme IX farnesyltransferase activity
Atu0770	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
Atu0773	COG3346	SURF1 family
Atu0774	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
Atu0775	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
Atu0776	COG0328	RNA-DNA hybrid ribonuclease activity
Atu0779	COG0678	peroxiredoxin activity
Atu0779	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
Atu0781	COG1678	Uncharacterized ACR, COG1678
Atu0785	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Atu0786	COG0612	Peptidase, M16
Atu0790	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Atu0791	COG1802	Transcriptional regulator
Atu0794	COG2189	Belongs to the N(4) N(6)-methyltransferase family
Atu0798	COG1194	a g-specific adenine glycosylase
Atu0800	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Atu0801	COG1196	nuclear chromosome segregation
Atu0802	COG2514	catechol 2,3-dioxygenase activity
Atu0803	COG0574	Belongs to the PEP-utilizing enzyme family
Atu0803	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Atu0804	COG1823	symporter activity
Atu0811	COG0579	oxidoreductase
Atu0816	COG2895	sulfate adenylyltransferase (ATP) activity
Atu0817	COG0175	sulfate reduction
Atu0818	COG0175	sulfate reduction
Atu0819	COG1959	2 iron, 2 sulfur cluster binding
Atu0820	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Atu0821	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
Atu0822	COG4208	sulfate ABC transporter
Atu0823	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
Atu0826	COG2199	diguanylate cyclase activity
Atu0826	COG2200	EAL domain
Atu0826	COG2203	Gaf domain
Atu0828	COG1309	transcriptional regulator
Atu0829	COG1012	belongs to the aldehyde dehydrogenase family
Atu0830	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
Atu0838	COG0477	Major facilitator Superfamily
Atu0840	COG1793	dna ligase
Atu0840	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Atu0844	COG1376	ErfK ybiS ycfS ynhG family protein
Atu0845	COG1376	ErfK ybiS ycfS ynhG family protein
Atu0846	COG1846	Transcriptional regulator
Atu0847	COG1764	response to oxidative stress
Atu0850	COG0488	(ABC) transporter
Atu0857	COG4221	oxidoreductase activity
Atu0860	COG0433	COG0433 Predicted ATPase
Atu0863	COG1733	regulation of RNA biosynthetic process
Atu0864	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
Atu0867	COG0656	L-ascorbic acid biosynthetic process
Atu0868	COG2378	regulation of single-species biofilm formation
Atu0870	COG4106	trans-aconitate 2-methyltransferase activity
Atu0871	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
Atu0872	COG0840	transmembrane signaling receptor activity
Atu0873	COG0583	DNA-binding transcription factor activity
Atu0876	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
Atu0878	COG2378	regulation of single-species biofilm formation
Atu0881	COG3909	cytochrome
Atu0882	COG2010	Cytochrome c
Atu0888	COG0789	Transcriptional regulator
Atu0893	COG4175	Glycine betaine
Atu0893	COG0517	IMP dehydrogenase activity
Atu0894	COG4176	ABC-type proline glycine betaine transport system permease component
Atu0899	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Atu0901	COG2169	Transcriptional regulator
Atu0901	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
Atu0903	COG2514	catechol 2,3-dioxygenase activity
Atu0906	COG1272	protein, Hemolysin III
Atu0908	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Atu0909	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
Atu0909	COG2111	Na H antiporter
Atu0910	COG2111	Na H antiporter
Atu0911	COG1006	Multisubunit Na H antiporter MnhC subunit
Atu0912	COG0651	ATP synthesis coupled electron transport
Atu0913	COG1863	multisubunit Na H antiporter MnhE subunit
Atu0914	COG2212	antiporter activity
Atu0915	COG1320	monovalent cation:proton antiporter activity
Atu0916	COG4957	zinc ion binding
Atu0919	COG2166	iron-sulfur cluster assembly
Atu0921	COG2205	protein histidine kinase activity
Atu0931	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Atu0932	COG2983	Belongs to the UPF0260 family
Atu0934	COG3041	Addiction module toxin RelE StbE family
Atu0935	COG3077	Addiction module antitoxin, RelB DinJ family
Atu0940	COG2337	Toxic component of a toxin-antitoxin (TA) module
Atu0942	COG2814	Major facilitator Superfamily
Atu0944	COG1621	beta-fructofuranosidase activity
Atu0945	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
Atu0954	COG4695	Portal protein
Atu0973	COG4235	cytochrome complex assembly
Atu0974	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
Atu0975	COG1138	Cytochrome C-type biogenesis protein
Atu0976	COG3088	subunit of a heme lyase
Atu0977	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Atu0979	COG2205	protein histidine kinase activity
Atu0981	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
Atu0982	COG2202	Pas domain
Atu0982	COG2205	protein histidine kinase activity
Atu0984	COG0308	aminopeptidase N
Atu0985	COG0697	spore germination
Atu0988	COG0443	Heat shock 70 kDa protein
Atu0996	COG0604	alcohol dehydrogenase
Atu0997	COG1733	regulation of RNA biosynthetic process
Atu0998	COG1968	undecaprenyl-diphosphatase activity
Atu0999	COG2239	Acts as a magnesium transporter
Atu1000	COG2814	Major facilitator Superfamily
Atu1006	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
Atu1011	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Atu1022	COG0741	lytic transglycosylase activity
Atu1024	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Atu1025	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
Atu1027	COG0840	transmembrane signaling receptor activity
Atu1029	COG1758	RNA polymerase activity
Atu1033	COG0736	holo-[acyl-carrier-protein] synthase activity
Atu1034	COG0681	Belongs to the peptidase S26 family
Atu1035	COG0571	ribonuclease III activity
Atu1036	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
Atu1037	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Atu1038	COG0784	Response regulator, receiver
Atu1039	COG1381	Involved in DNA repair and RecF pathway recombination
Atu1041	COG2226	methyltransferase
Atu1043	COG1418	mRNA catabolic process
Atu1045	COG0346	lactoylglutathione lyase activity
Atu1048	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Atu1049	COG3443	Belongs to the bacterial solute-binding protein 9 family
Atu1050	COG0668	transmembrane transport
Atu1052	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
Atu1057	COG1051	belongs to the nudix hydrolase family
Atu1058	COG1742	UPF0060 membrane protein
Atu1062	COG1183	phosphatidylcholine synthase activity
Atu1063	COG0688	phosphatidylethanolamine metabolic process
Atu1064	COG5265	(ABC) transporter
Atu1072	COG2852	Protein conserved in bacteria
Atu1073	COG0215	cysteine-tRNA ligase activity
Atu1074	COG4221	oxidoreductase activity
Atu1075	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
Atu1076	COG1286	toxin biosynthetic process
Atu1080	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
Atu1082	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
Atu1084	COG0305	Participates in initiation and elongation during chromosome replication
Atu1088	COG0359	binds to the 23S rRNA
Atu1090	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
Atu1091	COG0360	Binds together with S18 to 16S ribosomal RNA
Atu1093	COG0667	Aldo Keto reductase
Atu1094	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
Atu1096	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Atu1097	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Atu1099	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Atu1100	COG1561	YicC-like family, N-terminal region
Atu1101	COG0194	GDP metabolic process
Atu1102	COG0400	carboxylic ester hydrolase activity
Atu1103	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
Atu1104	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
Atu1106	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
Atu1110	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
Atu1114	COG5001	Diguanylate cyclase
Atu1114	COG3300	MHYT domain
Atu1115	COG4191	Histidine kinase
Atu1118	COG0488	(ABC) transporter
Atu1119	COG3706	GGDEF domain
Atu1122	COG0105	UTP biosynthetic process
Atu1126	COG0314	molybdopterin synthase activity
Atu1127	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
Atu1128	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Atu1129	COG0322	excinuclease ABC activity
Atu1130	COG1028	Short-chain dehydrogenase reductase Sdr
Atu1132	COG0625	glutathione transferase activity
Atu1135	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
Atu1136	COG0243	molybdopterin cofactor binding
Atu1140	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
Atu1141	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
Atu1142	COG0628	permease
Atu1144	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
Atu1145	COG0248	Ppx GppA phosphatase
Atu1149	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
Atu1151	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
Atu1152	COG0477	Major facilitator Superfamily
Atu1153	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
Atu1155	COG4452	Inner membrane protein CreD
Atu1156	COG0659	secondary active sulfate transmembrane transporter activity
Atu1158	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
Atu1159	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
Atu1161	COG0113	porphobilinogen synthase activity
Atu1165	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
Atu1166	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Atu1170	COG1280	lysine exporter protein (LysE YggA)
Atu1171	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
Atu1172	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Atu1173	COG2814	Major facilitator Superfamily
Atu1174	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
Atu1178	COG0416	fatty acid biosynthetic process
Atu1179	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Atu1180	COG0776	regulation of translation
Atu1198	COG0601	transmembrane transport
Atu1199	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Atu1200	COG0444	Belongs to the ABC transporter superfamily
Atu1204	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Atu1205	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Atu1208	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
Atu1209	COG0583	DNA-binding transcription factor activity
Atu1210	COG0737	Belongs to the 5'-nucleotidase family
Atu1215	COG2897	thiosulfate sulfurtransferase activity
Atu1218	COG0415	Belongs to the DNA photolyase family
Atu1220	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
Atu1226	COG3932	Exopolysaccharide synthesis, ExoD
Atu1237	COG0297	glycogen (starch) synthase activity
Atu1242	COG1612	heme a metabolic process
Atu1244	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
Atu1245	COG0010	Belongs to the arginase family
Atu1246	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Atu1247	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
Atu1250	COG1832	CoA-binding protein
Atu1255	COG1028	Short-chain dehydrogenase reductase Sdr
Atu1256	COG2124	cytochrome p450
Atu1257	COG2199	diguanylate cyclase activity
Atu1258	COG0740	serine-type endopeptidase activity
Atu1259	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
Atu1261	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Atu1268	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Atu1269	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Atu1270	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Atu1272	COG0649	NAD binding
Atu1274	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
Atu1275	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
Atu1277	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
Atu1278	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Atu1280	COG0713	ATP synthesis coupled electron transport
Atu1283	COG1007	ATP synthesis coupled electron transport
Atu1288	COG0442	prolyl-tRNA aminoacylation
Atu1290	COG1136	(ABC) transporter
Atu1294	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Atu1296	COG0784	Response regulator, receiver
Atu1299	COG0267	Belongs to the bacterial ribosomal protein bL33 family
Atu1300	COG0477	Major facilitator Superfamily
Atu1303	COG0557	exoribonuclease II activity
Atu1304	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Atu1305	COG0758	DNA mediated transformation
Atu1306	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
Atu1308	COG0540	Belongs to the ATCase OTCase family
Atu1310	COG1960	acyl-CoA dehydrogenase activity
Atu1311	COG0456	acetyltransferase
Atu1316	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
Atu1317	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
Atu1318	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Atu1319	COG0154	amidase activity
Atu1320	COG0456	acetyltransferase
Atu1321	COG3811	Belongs to the UPF0386 family
Atu1324	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Atu1326	COG0456	acetyltransferase
Atu1329	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
Atu1330	COG0439	Biotin carboxylase
Atu1331	COG0511	ligase activity, forming carbon-carbon bonds
Atu1332	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
Atu1334	COG0436	Aminotransferase
Atu1338	COG1028	Short-chain dehydrogenase reductase Sdr
Atu1339	COG1530	ribonuclease E activity
Atu1341	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Atu1345	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
Atu1346	COG0384	phenazine biosynthesis protein PhzF
Atu1350	COG0633	Ferredoxin
Atu1352	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
Atu1353	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
Atu1354	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Atu1356	COG3768	UPF0283 membrane protein
Atu1357	COG3106	COG3106 Predicted ATPase
Atu1363	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
Atu1369	COG0537	adenosine 5'-monophosphoramidase activity
Atu1374	COG0052	Belongs to the universal ribosomal protein uS2 family
Atu1375	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Atu1376	COG0528	UMP kinase activity
Atu1377	COG0233	cytoplasmic translational termination
Atu1378	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
Atu1380	COG0750	zinc metalloprotease
Atu1381	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Atu1382	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Atu1383	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Atu1384	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Atu1385	COG3494	Protein of unknown function (DUF1009)
Atu1386	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Atu1387	COG2186	Transcriptional regulator
Atu1389	COG0765	amino acid transport
Atu1390	COG0765	amino acid transport
Atu1392	COG0372	Belongs to the citrate synthase family
Atu1395	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Atu1396	COG4598	ABC transporter
Atu1397	COG0765	amino acid transport
Atu1398	COG0765	amino acid transport
Atu1399	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Atu1400	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Atu1402	COG0395	ABC-type sugar transport system, permease component
Atu1404	COG2182	Extracellular solute-binding protein
Atu1406	COG4948	Mandelate Racemase Muconate Lactonizing
Atu1407	COG1028	Short-chain dehydrogenase reductase Sdr
Atu1408	COG1063	alcohol dehydrogenase
Atu1409	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
Atu1413	COG0683	leucine binding
Atu1414	COG1960	acyl-CoA dehydrogenase activity
Atu1417	COG1024	Enoyl-CoA hydratase
Atu1420	COG0404	The glycine cleavage system catalyzes the degradation of glycine
Atu1424	COG2877	3-deoxy-8-phosphooctulonate synthase activity
Atu1426	COG0148	phosphopyruvate hydratase activity
Atu1429	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
Atu1430	COG0022	dehydrogenase e1 component
Atu1430	COG0508	dehydrogenase complex catalyzes the overall conversion of
Atu1432	COG0508	dehydrogenase complex catalyzes the overall conversion of
Atu1434	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Atu1436	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
Atu1437	COG0697	spore germination
Atu1441	COG2867	negative regulation of translational initiation
Atu1443	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Atu1443	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Atu1445	COG3852	Histidine kinase
Atu1446	COG2204	response regulator
Atu1447	COG5000	phosphorelay sensor kinase activity
Atu1448	COG2204	response regulator
Atu1449	COG0569	domain protein
Atu1450	COG1923	regulation of RNA biosynthetic process
Atu1451	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Atu1452	COG3956	TIGRFAM MazG family protein
Atu1454	COG1648	precorrin-2 dehydrogenase activity
Atu1454	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Atu1457	COG0275	rRNA processing
Atu1462	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Atu1462	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Atu1463	COG0509	glycine decarboxylation via glycine cleavage system
Atu1464	COG0404	The glycine cleavage system catalyzes the degradation of glycine
Atu1470	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
Atu1471	COG0564	pseudouridine synthase activity
Atu1475	COG0251	oxidation-reduction process
Atu1476	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
Atu1478	COG1671	Belongs to the UPF0178 family
Atu1480	COG0450	alkyl hydroperoxide reductase
Atu1488	COG2826	transposase and inactivated derivatives, IS30 family
Atu1489	COG0431	NADPH-dependent FMN reductase
Atu1491	COG0798	PFAM Bile acid sodium symporter
Atu1494	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
Atu1494	COG0321	lipoyl(octanoyl) transferase activity
Atu1495	COG0084	hydrolase, TatD family'
Atu1496	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Atu1498	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
Atu1507	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
Atu1508	COG2095	MarC family integral membrane protein
Atu1509	COG0617	tRNA 3'-terminal CCA addition
Atu1509	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
Atu1509	COG0517	IMP dehydrogenase activity
Atu1511	COG3609	addiction module antidote protein, CC2985 family
Atu1512	COG0629	single-stranded DNA binding
Atu1513	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
Atu1515	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Atu1516	COG0179	Fumarylacetoacetate (FAA) hydrolase
Atu1519	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Atu1520	COG1121	(ABC) transporter
Atu1524	COG0667	Aldo Keto reductase
Atu1526	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
Atu1541	COG0668	transmembrane transport
Atu1547	COG2239	Acts as a magnesium transporter
Atu1548	COG0243	molybdopterin cofactor binding
Atu1550	COG0242	peptide deformylase activity
Atu1556	COG0321	lipoyl(octanoyl) transferase activity
Atu1557	COG1064	alcohol dehydrogenase
Atu1563	COG1862	Preprotein translocase
Atu1569	COG2124	cytochrome p450
Atu1572	COG0596	Alpha beta hydrolase
Atu1575	COG0626	cystathionine gamma-synthase activity
Atu1577	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Atu1578	COG4597	amino acid ABC transporter
Atu1579	COG0765	amino acid transport
Atu1580	COG1126	abc transporter atp-binding protein
Atu1586	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Atu1589	COG0436	Aminotransferase
Atu1596	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Atu1599	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Atu1600	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Atu1601	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Atu1604	COG3243	poly(R)-hydroxyalkanoic acid synthase
Atu1605	COG1489	DNA binding
Atu1606	COG0024	Methionine aminopeptidase
Atu1607	COG2003	Belongs to the UPF0758 family
Atu1610	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
Atu1613	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
Atu1614	COG0546	phosphoglycolate phosphatase activity
Atu1616	COG0114	fumarate hydratase activity
Atu1618	COG0504	CTP synthase activity
Atu1620	COG0149	triose-phosphate isomerase activity
Atu1622	COG0187	DNA topoisomerase II activity
Atu1624	COG1309	transcriptional regulator
Atu1625	COG2226	methyltransferase
Atu1627	COG0740	serine-type endopeptidase activity
Atu1629	COG0640	Transcriptional regulator
Atu1630	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Atu1631	COG0745	RESPONSE REGULATOR receiver
Atu1633	COG3264	Mechanosensitive ion channel
Atu1633	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
Atu1646	COG1127	ABC transporter
Atu1647	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Atu1648	COG4948	Mandelate Racemase Muconate Lactonizing
Atu1652	COG0280	phosphate acetyltransferase
Atu1652	COG0281	malic enzyme
Atu1654	COG0778	Nitroreductase
Atu1656	COG0823	Involved in the tonB-independent uptake of proteins
Atu1658	COG1368	sulfuric ester hydrolase activity
Atu1664	COG0544	peptidyl-prolyl cis-trans isomerase activity
Atu1669	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
Atu1670	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
Atu1677	COG0343	queuine tRNA-ribosyltransferase activity
Atu1678	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
Atu1681	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
Atu1687	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
Atu1688	COG0134	indole-3-glycerol-phosphate synthase activity
Atu1689	COG0315	cyclic pyranopterin monophosphate synthase activity
Atu1690	COG0303	'Molybdopterin
Atu1691	COG3706	GGDEF domain
Atu1693	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Atu1693	COG0475	glutathione-regulated potassium exporter activity
Atu1695	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
Atu1696	COG0697	spore germination
Atu1697	COG2814	Major facilitator Superfamily
Atu1698	COG0746	molybdenum cofactor guanylyltransferase activity
Atu1699	COG1763	Mo-molybdopterin cofactor biosynthetic process
Atu1700	COG0739	heme binding
Atu1701	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
Atu1702	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
Atu1703	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
Atu1704	COG0805	protein transport
Atu1705	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
Atu1706	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
Atu1707	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
Atu1708	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
Atu1709	COG1472	Belongs to the glycosyl hydrolase 3 family
Atu1711	COG0018	arginyl-trna synthetase
Atu1712	COG0232	Belongs to the dGTPase family. Type 2 subfamily
Atu1713	COG0316	Belongs to the HesB IscA family
Atu1715	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
Atu1719	COG0525	valine-tRNA ligase activity
Atu1721	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
Atu1728	COG0655	NAD(P)H dehydrogenase (quinone) activity
Atu1729	COG1546	Belongs to the CinA family
Atu1729	COG1058	Belongs to the CinA family
Atu1730	COG0589	response to stress
Atu1731	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
Atu1733	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Atu1736	COG1914	H( )-stimulated, divalent metal cation uptake system
Atu1738	COG1132	(ABC) transporter
Atu1739	COG0628	permease
Atu1743	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
Atu1746	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
Atu1747	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
Atu1749	COG0302	gtp cyclohydrolase
Atu1750	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
Atu1751	COG1752	Esterase of the alpha-beta hydrolase superfamily
Atu1752	COG0516	GMP reductase activity
Atu1752	COG0517	IMP dehydrogenase activity
Atu1759	COG1760	l-serine dehydratase
Atu1765	COG0583	DNA-binding transcription factor activity
Atu1768	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Atu1768	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Atu1769	COG0347	Belongs to the P(II) protein family
Atu1770	COG0174	glutamine synthetase
Atu1776	COG0697	spore germination
Atu1778	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Atu1780	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Atu1782	COG3668	Plasmid stabilization system
Atu1783	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
Atu1786	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
Atu1787	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
Atu1788	COG2186	Transcriptional regulator
Atu1790	COG1079	Belongs to the binding-protein-dependent transport system permease family
Atu1791	COG4603	Belongs to the binding-protein-dependent transport system permease family
Atu1792	COG3845	ABC transporter
Atu1793	COG1183	phosphatidylcholine synthase activity
Atu1794	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Atu1795	COG0679	Auxin Efflux Carrier
Atu1796	COG0785	Cytochrome C biogenesis protein
Atu1803	COG1278	Cold shock
Atu1814	COG2267	carboxylic ester hydrolase activity
Atu1816	COG0577	efflux transmembrane transporter activity
Atu1816	COG1136	(ABC) transporter
Atu1817	COG0577	efflux transmembrane transporter activity
Atu1817	COG1136	(ABC) transporter
Atu1820	COG2151	metal-sulfur cluster biosynthetic enzyme
Atu1821	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
Atu1822	COG0719	Fe-S assembly protein
Atu1823	COG0396	ATPase activity
Atu1824	COG0719	Fe-S assembly protein
Atu1825	COG1104	cysteine desulfurase activity
Atu1826	COG2945	thiolester hydrolase activity
Atu1827	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
Atu1828	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
Atu1830	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
Atu1831	COG2833	Protein of unknown function (DUF455)
Atu1832	COG0739	heme binding
Atu1833	COG0513	Belongs to the DEAD box helicase family
Atu1841	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
Atu1843	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
Atu1844	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
Atu1845	COG0047	phosphoribosylformylglycinamidine synthase activity
Atu1848	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Atu1850	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
Atu1854	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
Atu1855	COG2814	Major facilitator Superfamily
Atu1856	COG0483	inositol monophosphate 1-phosphatase activity
Atu1857	COG0483	inositol monophosphate 1-phosphatase activity
Atu1858	COG0037	tRNA processing
Atu1859	COG2066	Belongs to the glutaminase family
Atu1860	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
Atu1861	COG0861	Integral membrane protein TerC family
Atu1864	COG1280	lysine exporter protein (LysE YggA)
Atu1867	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
Atu1868	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
Atu1870	COG0538	isocitrate dehydrogenase activity
Atu1873	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
Atu1874	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
Atu1875	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Atu1876	COG2313	pseudouridylate synthase activity
Atu1879	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Atu1880	COG4215	(ABC) transporter
Atu1882	COG5425	PFAM Usg family protein
Atu1884	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Atu1885	COG1522	sequence-specific DNA binding
Atu1886	COG1573	uracil-dna glycosylase
Atu1888	COG2205	protein histidine kinase activity
Atu1888	COG2202	Pas domain
Atu1890	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
Atu1891	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
Atu1895	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Atu1897	COG1028	Short-chain dehydrogenase reductase Sdr
Atu1898	COG1129	ABC transporter
Atu1900	COG1172	Belongs to the binding-protein-dependent transport system permease family
Atu1901	COG3959	Transketolase, thiamine diphosphate binding domain
Atu1902	COG3958	Transketolase
Atu1903	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
Atu1904	COG2390	Transcriptional regulator
Atu1906	COG0842	Transport permease protein
Atu1907	COG1131	(ABC) transporter
Atu1914	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Atu1915	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Atu1918	COG0129	dihydroxy-acid dehydratase activity
Atu1919	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
Atu1920	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
Atu1921	COG3739	integral membrane protein
Atu1922	COG0203	ribosomal protein L17
Atu1923	COG0202	RNA polymerase activity
Atu1924	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
Atu1925	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
Atu1926	COG0563	adenylate kinase activity
Atu1927	COG0201	protein transport
Atu1928	COG0200	Binds to the 23S rRNA
Atu1929	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
Atu1930	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
Atu1931	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
Atu1932	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
Atu1933	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
Atu1934	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
Atu1935	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
Atu1936	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
Atu1937	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
Atu1938	COG0255	Belongs to the universal ribosomal protein uL29 family
Atu1939	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Atu1940	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
Atu1941	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
Atu1942	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
Atu1943	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
Atu1944	COG0089	rRNA binding
Atu1945	COG0088	Forms part of the polypeptide exit tunnel
Atu1946	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
Atu1947	COG0051	transcription antitermination factor activity, RNA binding
Atu1948	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Atu1949	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Atu1950	COG0049	tRNA binding
Atu1951	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
Atu1955	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Atu1956	COG0085	RNA polymerase activity
Atu1957	COG0222	ribosome binding
Atu1958	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
Atu1959	COG0081	regulation of translation
Atu1960	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
Atu1962	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Atu1965	COG1086	Polysaccharide biosynthesis protein
Atu1966	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Atu1967	COG0861	Integral membrane protein TerC family
Atu1969	COG3895	Periplasmic Protein
Atu1974	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Atu1979	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Atu1986	COG2205	protein histidine kinase activity
Atu1986	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Atu1986	COG2198	Histidine kinase
Atu1986	COG0784	Response regulator, receiver
Atu1987	COG0784	Response regulator, receiver
Atu1988	COG2202	Pas domain
Atu1988	COG3920	Histidine kinase
Atu1989	COG0784	Response regulator, receiver
Atu1990	COG4251	negative regulation of phosphorylation
Atu1993	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Atu1999	COG2910	NAD(P)H-binding
Atu2000	COG1733	regulation of RNA biosynthetic process
Atu2001	COG0556	nucleotide-excision repair
Atu2002	COG2382	esterase
Atu2006	COG0484	heat shock protein binding
Atu2010	COG3706	GGDEF domain
Atu2012	COG3842	ATPase activity
Atu2014	COG1840	ABC-type Fe3 transport system, periplasmic component
Atu2015	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Atu2017	COG4115	mRNA cleavage
Atu2019	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
Atu2021	COG2207	Transcriptional regulator
Atu2022	COG1064	alcohol dehydrogenase
Atu2023	COG1252	NADH dehydrogenase
Atu2024	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
Atu2025	COG2197	response regulator
Atu2026	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Atu2032	COG0656	L-ascorbic acid biosynthetic process
Atu2035	COG0440	acetolactate synthase activity
Atu2036	COG0028	Belongs to the TPP enzyme family
Atu2039	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
Atu2040	COG0560	Phosphoserine phosphatase
Atu2040	COG3830	Belongs to the UPF0237 family
Atu2042	COG1028	Short-chain dehydrogenase reductase Sdr
Atu2044	COG0330	HflC and HflK could
Atu2045	COG0330	HflC and HflK could
Atu2047	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
Atu2053	COG0277	FAD linked oxidase domain protein
Atu2054	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Atu2066	COG1335	isochorismatase
Atu2070	COG0006	proline dipeptidase activity
Atu2072	COG2264	protein methyltransferase activity
Atu2073	COG1999	signal sequence binding
Atu2075	COG0835	chemotaxis
Atu2077	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
Atu2078	COG0583	DNA-binding transcription factor activity
Atu2080	COG1247	-acetyltransferase
Atu2082	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
Atu2083	COG0497	DNA recombination
Atu2084	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Atu2086	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
Atu2087	COG0849	cell division
Atu2088	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
Atu2089	COG1181	Belongs to the D-alanine--D-alanine ligase family
Atu2090	COG0477	Major facilitator Superfamily
Atu2091	COG5001	Diguanylate cyclase
Atu2091	COG3300	MHYT domain
Atu2092	COG0812	UDP-N-acetylmuramate dehydrogenase activity
Atu2093	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Atu2094	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
Atu2096	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
Atu2097	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Atu2099	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Atu2102	COG0275	rRNA processing
Atu2103	COG2001	Belongs to the MraZ family
Atu2104	COG3766	membrane
Atu2106	COG0754	glutathionylspermidine amidase activity
Atu2108	COG0754	glutathionylspermidine amidase activity
Atu2113	COG3023	N-Acetylmuramoyl-L-alanine amidase
Atu2120	COG4106	trans-aconitate 2-methyltransferase activity
Atu2124	COG2226	methyltransferase
Atu2126	COG2267	carboxylic ester hydrolase activity
Atu2127	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Atu2130	COG0251	oxidation-reduction process
Atu2133	COG1376	ErfK ybiS ycfS ynhG family protein
Atu2134	COG2814	Major facilitator Superfamily
Atu2139	COG1012	belongs to the aldehyde dehydrogenase family
Atu2142	COG0174	glutamine synthetase
Atu2143	COG0531	amino acid
Atu2145	COG1737	Transcriptional regulator
Atu2150	COG3842	ATPase activity
Atu2162	COG2968	Membrane
Atu2164	COG0432	Pfam Uncharacterised protein family UPF0047
Atu2167	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Atu2168	COG0358	DNA primase activity
Atu2170	COG0505	Belongs to the CarA family
Atu2172	COG0534	Mate efflux family protein
Atu2175	COG2321	neutral zinc metallopeptidase
Atu2178	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Atu2179	COG3706	GGDEF domain
Atu2182	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Atu2184	COG1522	sequence-specific DNA binding
Atu2185	COG0492	ferredoxin-NADP+ reductase activity
Atu2186	COG0583	DNA-binding transcription factor activity
Atu2188	COG1902	pentaerythritol trinitrate reductase activity
Atu2195	COG0387	Pfam Sodium calcium exchanger
Atu2196	COG0436	Aminotransferase
Atu2197	COG2200	EAL domain
Atu2197	COG2199	diguanylate cyclase activity
Atu2200	COG1278	Cold shock
Atu2201	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Atu2205	COG1846	Transcriptional regulator
Atu2206	COG0745	RESPONSE REGULATOR receiver
Atu2207	COG2205	protein histidine kinase activity
Atu2208	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Atu2213	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
Atu2215	COG1496	oxidoreductase activity
Atu2218	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
Atu2220	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Atu2223	COG0840	transmembrane signaling receptor activity
Atu2224	COG1012	belongs to the aldehyde dehydrogenase family
Atu2225	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
Atu2226	COG3300	MHYT domain
Atu2226	COG5001	Diguanylate cyclase
Atu2227	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
Atu2228	COG5001	Diguanylate cyclase
Atu2230	COG0193	aminoacyl-tRNA hydrolase activity
Atu2232	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
Atu2236	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
Atu2237	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
Atu2237	COG2857	Cytochrome c1
Atu2241	COG1132	(ABC) transporter
Atu2242	COG1132	(ABC) transporter
Atu2243	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
Atu2244	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
Atu2247	COG0408	coproporphyrinogen oxidase activity
Atu2250	COG0617	tRNA 3'-terminal CCA addition
Atu2251	COG0494	nUDIX hydrolase
Atu2253	COG0714	Associated with various cellular activities
Atu2258	COG0454	-acetyltransferase
Atu2259	COG0477	Major facilitator Superfamily
Atu2261	COG0435	Glutathione S-transferase
Atu2262	COG0494	nUDIX hydrolase
Atu2264	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Atu2265	COG3135	benzoate transporter
Atu2268	COG1595	DNA-templated transcription, initiation
Atu2270	COG0740	serine-type endopeptidase activity
Atu2273	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
Atu2274	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
Atu2279	COG4175	Glycine betaine
Atu2282	COG1435	thymidine kinase activity
Atu2286	COG2862	Uncharacterized protein family, UPF0114
Atu2289	COG0512	Glutamine amidotransferase of anthranilate synthase
Atu2289	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
Atu2292	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
Atu2295	COG0366	Alpha amylase catalytic
Atu2296	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Atu2300	COG1160	GTP binding
Atu2304	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
Atu2306	COG0024	Methionine aminopeptidase
Atu2308	COG1028	Short-chain dehydrogenase reductase Sdr
Atu2310	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Atu2312	COG0583	DNA-binding transcription factor activity
Atu2315	COG0402	S-adenosylhomocysteine deaminase activity
Atu2318	COG1304	FMN binding
Atu2320	COG1309	transcriptional regulator
Atu2321	COG1686	Belongs to the peptidase S11 family
Atu2323	COG2351	hydroxyisourate hydrolase activity
Atu2324	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
Atu2329	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
Atu2331	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Atu2331	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
Atu2333	COG0513	Belongs to the DEAD box helicase family
Atu2334	COG0697	spore germination
Atu2335	COG2259	Doxx family
Atu2336	COG1376	ErfK ybiS ycfS ynhG family protein
Atu2338	COG2308	Evidence 4 Homologs of previously reported genes of
Atu2340	COG1305	Transglutaminase-like
Atu2341	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Atu2343	COG0456	acetyltransferase
Atu2346	COG4214	carbohydrate transport
Atu2347	COG1129	ABC transporter
Atu2348	COG4213	ABC transporter substrate-binding protein
Atu2358	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Atu2360	COG0840	transmembrane signaling receptor activity
Atu2361	COG2814	Major facilitator Superfamily
Atu2362	COG0646	methionine synthase
Atu2362	COG1410	methionine synthase
Atu2364	COG4215	(ABC) transporter
Atu2365	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Atu2372	COG1215	transferase activity, transferring glycosyl groups
Atu2379	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Atu2380	COG2346	COG2346, Truncated hemoglobins
Atu2384	COG1309	transcriptional regulator
Atu2387	COG0494	nUDIX hydrolase
Atu2389	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Atu2390	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Atu2396	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
Atu2397	COG0830	nickel cation binding
Atu2398	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
Atu2401	COG0804	urea catabolic process
Atu2402	COG1442	glycosyl transferase family 8
Atu2403	COG3755	Protein conserved in bacteria
Atu2405	COG0832	Belongs to the urease beta subunit family
Atu2406	COG3813	Protein conserved in bacteria
Atu2407	COG0831	urea catabolic process
Atu2408	COG0829	nickel cation binding
Atu2413	COG0559	Belongs to the binding-protein-dependent transport system permease family
Atu2416	COG0174	glutamine synthetase
Atu2417	COG1028	Short-chain dehydrogenase reductase Sdr
Atu2418	COG0784	Response regulator, receiver
Atu2418	COG2198	Histidine kinase
Atu2418	COG5002	protein histidine kinase activity
Atu2428	COG1218	3'(2'),5'-bisphosphate nucleotidase
Atu2443	COG0564	pseudouridine synthase activity
Atu2445	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Atu2447	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
Atu2453	COG0346	lactoylglutathione lyase activity
Atu2455	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
Atu2457	COG2832	Protein of unknown function (DUF454)
Atu2458	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
Atu2459	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Atu2460	COG4558	Periplasmic binding protein
Atu2462	COG3721	Heme iron utilization protein
Atu2465	COG2205	protein histidine kinase activity
Atu2474	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Atu2475	COG4605	iron ion homeostasis
Atu2476	COG4604	ABC transporter, ATP-binding protein
Atu2477	COG0783	Belongs to the Dps family
Atu2480	COG0583	DNA-binding transcription factor activity
Atu2481	COG0657	acetylesterase activity
Atu2482	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Atu2486	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Atu2487	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
Atu2488	COG0288	reversible hydration of carbon dioxide
Atu2490	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
Atu2494	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
Atu2495	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
Atu2496	COG0778	Nitroreductase
Atu2497	COG2267	carboxylic ester hydrolase activity
Atu2498	COG0251	oxidation-reduction process
Atu2499	COG1335	isochorismatase
Atu2500	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Atu2503	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Atu2506	COG1175	transmembrane transport
Atu2507	COG0395	ABC-type sugar transport system, permease component
Atu2508	COG3842	ATPase activity
Atu2509	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Atu2511	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
Atu2514	COG4608	Belongs to the ABC transporter superfamily
Atu2515	COG0444	Belongs to the ABC transporter superfamily
Atu2516	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Atu2517	COG0601	transmembrane transport
Atu2521	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
Atu2521	COG0392	lysyltransferase activity
Atu2530	COG1960	acyl-CoA dehydrogenase activity
Atu2536	COG0745	RESPONSE REGULATOR receiver
Atu2538	COG1902	pentaerythritol trinitrate reductase activity
Atu2538	COG0446	pyridine nucleotide-disulphide oxidoreductase
Atu2548	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
Atu2550	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Atu2551	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Atu2553	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
Atu2555	COG1509	lysine 2,3-aminomutase activity
Atu2559	COG0583	DNA-binding transcription factor activity
Atu2560	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Atu2561	COG0725	ABC transporter, periplasmic molybdate-binding protein
Atu2562	COG4149	molybdate abc transporter
Atu2563	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
Atu2565	COG3191	aminopeptidase activity
Atu2566	COG2022	thiamine diphosphate biosynthetic process
Atu2569	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
Atu2571	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Atu2573	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
Atu2578	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Atu2583	COG0438	transferase activity, transferring glycosyl groups
Atu2587	COG4166	transmembrane transport
Atu2588	COG0601	transmembrane transport
Atu2589	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Atu2591	COG0438	transferase activity, transferring glycosyl groups
Atu2592	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
Atu2593	COG3142	Participates in the control of copper homeostasis
Atu2597	COG1028	Short-chain dehydrogenase reductase Sdr
Atu2598	COG1737	Transcriptional regulator
Atu2600	COG3842	ATPase activity
Atu2602	COG0395	ABC-type sugar transport system, permease component
Atu2603	COG1175	transmembrane transport
Atu2606	COG2188	Transcriptional regulator
Atu2607	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
Atu2608	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
Atu2609	COG1940	carbohydrate kinase activity
Atu2611	COG0671	phosphoesterase, PA-phosphatase related
Atu2612	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
Atu2613	COG0156	8-amino-7-oxononanoate synthase activity
Atu2615	COG0729	surface antigen
Atu2617	COG0835	chemotaxis
Atu2619	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
Atu2621	COG0355	proton-transporting ATP synthase activity, rotational mechanism
Atu2622	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
Atu2623	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
Atu2624	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
Atu2625	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
Atu2628	COG4974	Belongs to the 'phage' integrase family
Atu2633	COG1280	lysine exporter protein (LysE YggA)
Atu2635	COG0508	dehydrogenase complex catalyzes the overall conversion of
Atu2637	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
Atu2638	COG0045	succinate-CoA ligase (ADP-forming) activity
Atu2639	COG0039	L-malate dehydrogenase activity
Atu2640	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
Atu2647	COG2264	protein methyltransferase activity
Atu2650	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
Atu2651	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
Atu2652	COG0181	hydroxymethylbilane synthase activity
Atu2660	COG1872	DUF167
Atu2661	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
Atu2663	COG1217	gtp-binding protein TYPA
Atu2664	COG0339	signal peptide processing
Atu2665	COG1846	Transcriptional regulator
Atu2667	COG0137	argininosuccinate synthase activity
Atu2669	COG1280	lysine exporter protein (LysE YggA)
Atu2670	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
Atu2671	COG4120	Belongs to the binding-protein-dependent transport system permease family
Atu2673	COG0820	rRNA (adenine-C2-)-methyltransferase activity
Atu2676	COG2154	pterin-4-alpha-carbinolamine dehydratase
Atu2677	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Atu2678	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
Atu2680	COG4181	ATPase activity
Atu2682	COG0670	Belongs to the BI1 family
Atu2685	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
Atu2686	COG4133	protoheme IX ABC transporter activity
Atu2687	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Atu2688	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Atu2692	COG2917	probably involved in intracellular septation
Atu2693	COG0552	protein localization to endoplasmic reticulum
Atu2694	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Atu2695	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
Atu2697	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
Atu2698	COG0287	Prephenate dehydrogenase
Atu2698	COG1605	Chorismate mutase
Atu2699	COG0228	four-way junction DNA binding
Atu2700	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
Atu2701	COG0336	Belongs to the RNA methyltransferase TrmD family
Atu2703	COG0335	large ribosomal subunit rRNA binding
Atu2705	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
Atu2706	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Atu2709	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Atu2712	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
Atu2716	COG0488	(ABC) transporter
Atu2718	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
Atu2720	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
Atu2721	COG0142	geranyltranstransferase activity
Atu2722	COG2885	chlorophyll binding
Atu2723	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
Atu2724	COG2223	nitrite transmembrane transporter activity
Atu2725	COG1349	DNA-binding transcription factor activity
Atu2726	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
Atu2727	COG2197	response regulator
Atu2728	COG1132	(ABC) transporter
Atu2730	COG3459	Glycosyltransferase 36 associated
Atu2732	COG1473	amidohydrolase
Atu2734	COG0579	oxidoreductase
Atu2736	COG0129	dihydroxy-acid dehydratase activity
Atu2737	COG2084	Dehydrogenase
Atu2738	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Atu2739	COG0277	FAD linked oxidase domain protein
Atu2740	COG2186	Transcriptional regulator
Atu2742	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Atu2743	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
Atu2744	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Atu2745	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
Atu2747	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
Atu2748	COG0495	leucyl-tRNA aminoacylation
Atu2751	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
Atu2755	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Atu2756	COG1946	Acyl-CoA thioesterase
Atu2757	COG0347	Belongs to the P(II) protein family
Atu2758	COG0004	ammonium transporteR
Atu2759	COG1674	ftsk spoiiie
Atu2760	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
Atu2763	COG0745	RESPONSE REGULATOR receiver
Atu2765	COG1329	Transcriptional regulator
Atu2766	COG2902	Dehydrogenase
Atu2767	COG2270	Major facilitator Superfamily
Atu2770	COG1028	Short-chain dehydrogenase reductase Sdr
Atu2772	COG0494	nUDIX hydrolase
Atu2774	COG0793	Belongs to the peptidase S41A family
Atu2776	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
Atu2777	COG0799	negative regulation of ribosome biogenesis
Atu2778	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
Atu2779	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
Atu2780	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
Atu2781	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
Atu2784	COG0211	Belongs to the bacterial ribosomal protein bL27 family
Atu2785	COG0261	This protein binds to 23S rRNA in the presence of protein L20
Atu2790	COG0066	3-isopropylmalate dehydratase activity
Atu2791	COG0473	3-isopropylmalate dehydrogenase activity
Atu2792	COG1858	cytochrome C peroxidase
Atu2793	COG1797	cobyrinic acid a,c-diamide synthase activity
Atu2794	COG1648	precorrin-2 dehydrogenase activity
Atu2794	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Atu2795	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
Atu2808	COG1492	cobalamin metabolic process
Atu2811	COG4948	Mandelate Racemase Muconate Lactonizing
Atu2812	COG3254	rhamnose metabolic process
Atu2813	COG0246	Mannitol dehydrogenase
Atu2814	COG1063	alcohol dehydrogenase
Atu2818	COG4214	carbohydrate transport
Atu2819	COG1129	ABC transporter
Atu2821	COG2186	Transcriptional regulator
Atu2822	COG2721	sulfolactate sulfo-lyase activity
Atu2823	COG0138	bifunctional purine biosynthesis protein purh
Atu2825	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
Atu2825	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Atu2826	COG0501	Belongs to the peptidase M48B family
Atu2830	COG0357	Ribosomal RNA small subunit methyltransferase G
Atu2831	COG0445	tRNA wobble uridine modification
Atu2832	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
Atu2833	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
Atu2834	COG1981	membrane
Atu2835	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
Atu3069	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Atu3079	COG1185	polyribonucleotide nucleotidyltransferase activity
Atu3084	COG3064	Membrane
Atu3084	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
Atu3100	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Atu3123	COG3845	ABC transporter
Atu3124	COG3845	ABC transporter
Atu3192	COG1125	glycine betaine transport
Atu3206	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
Atu3288	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
Atu3289	COG1024	Enoyl-CoA hydratase
Atu3471	COG2198	Histidine kinase
Atu3471	COG0784	Response regulator, receiver
Atu3471	COG2205	protein histidine kinase activity
Atu3539	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Atu3542	COG2081	HI0933 family
Atu3608	COG0247	lactate metabolic process
Atu3617	COG0124	histidyl-tRNA synthetase
Atu3622	COG0459	protein refolding
Atu3630	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
Atu3636	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Atu3636	COG0475	glutathione-regulated potassium exporter activity
Atu3648	COG0745	RESPONSE REGULATOR receiver
Atu3650	COG2203	Gaf domain
Atu3650	COG3706	GGDEF domain
Atu3650	COG4251	negative regulation of phosphorylation
Atu3650	COG5001	Diguanylate cyclase
Atu3718	COG2514	catechol 2,3-dioxygenase activity
Atu3730	COG0579	oxidoreductase
Atu3773	COG4221	oxidoreductase activity
Atu3775	COG0433	COG0433 Predicted ATPase
Atu3870	COG1138	Cytochrome C-type biogenesis protein
Atu3907	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Atu3951	COG5265	(ABC) transporter
Atu3963	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
Atu4028	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
Atu4029	COG0477	Major facilitator Superfamily
Atu4039	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
Atu4070	COG2217	Heavy metal translocating P-type atpase
Atu4085	COG0737	Belongs to the 5'-nucleotidase family
Atu4130	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Atu4144	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
Atu4202	COG1530	ribonuclease E activity
Atu4255	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Atu4286	COG1960	acyl-CoA dehydrogenase activity
Atu4300	COG0022	dehydrogenase e1 component
Atu4300	COG0508	dehydrogenase complex catalyzes the overall conversion of
Atu4303	COG0508	dehydrogenase complex catalyzes the overall conversion of
Atu4330	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Atu4330	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
Atu4367	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
Atu4396	COG0668	transmembrane transport
Atu4402	COG0243	molybdopterin cofactor binding
Atu4409	COG1064	alcohol dehydrogenase
Atu4518	COG0343	queuine tRNA-ribosyltransferase activity
Atu4569	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Atu4574	COG1914	H( )-stimulated, divalent metal cation uptake system
Atu4576	COG1132	(ABC) transporter
Atu4586	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
Atu4589	COG0302	gtp cyclohydrolase
Atu4653	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
Atu4669	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
Atu4690	COG0538	isocitrate dehydrogenase activity
Atu4711	COG1129	ABC transporter
Atu4718	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
Atu4742	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
Atu4818	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
Atu4859	COG0497	DNA recombination
Atu4895	COG0754	glutathionylspermidine amidase activity
Atu5014	COG0135	phosphoribosylanthranilate isomerase activity
Atu5021	COG1074	ATP-dependent DNA helicase activity
Atu5028	COG2205	protein histidine kinase activity
Atu5049	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
Atu5072	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Atu5092	COG2951	lytic endotransglycosylase activity
Atu5096	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Atu5144	COG0069	glutamate synthase activity
Atu5144	COG0070	glutamate synthase
Atu5144	COG0067	glutamate synthase
Atu5154	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
Atu5159	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Atu5276	COG0519	Catalyzes the synthesis of GMP from XMP
Atu5276	COG0518	GMP synthase (glutamine-hydrolyzing) activity
Atu5293	COG1968	undecaprenyl-diphosphatase activity
Atu5308	COG0189	ligase activity
Atu5404	COG0166	Belongs to the GPI family
Atu5436	COG0717	Belongs to the dCTP deaminase family
Atu5542	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
Atu6030	COG0107	imidazoleglycerol-phosphate synthase activity
Atu6072	COG1185	polyribonucleotide nucleotidyltransferase activity
Atu6106	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Atu6120	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
Atu6123	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
Atu6158	COG3639	organic phosphonate transmembrane transporter activity
Atu6174	COG4166	transmembrane transport
Atu6177	COG4239	(ABC) transporter, permease
Atu8032	COG1766	The M ring may be actively involved in energy transduction
Atu8064	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Atu8065	COG1841	ribosomal large subunit assembly
Atu8066	COG0230	Belongs to the bacterial ribosomal protein bL34 family
Atu8110	COG0308	aminopeptidase N
Atu8131	COG2111	Na H antiporter
Atu8131	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
Atu8143	COG3713	MltA-interacting MipA family protein
Atu8147	COG1652	LysM domain
Atu8148	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Atu8148	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Atu8192	COG2895	sulfate adenylyltransferase (ATP) activity