Atu0005 SM00479 Atu0005 Atu0008 SM00978 Atu0008 Atu0009 SM00925 MltA specific insert domain Atu0010 SM00463 Small MutS-related domain Atu0011 SM00530 Helix-turn-helix XRE-family like proteins Atu0012 SM00387 Histidine kinase-like ATPases Atu0012 SM00433 TopoisomeraseII Atu0027 SM00387 Histidine kinase-like ATPases Atu0027 SM00388 His Kinase A (phosphoacceptor) domain Atu0029 SM00996 S-adenosyl-L-homocysteine hydrolase Atu0029 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Atu0033 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0033 SM00387 Histidine kinase-like ATPases Atu0033 SM00388 His Kinase A (phosphoacceptor) domain Atu0034 SM00448 cheY-homologous receiver domain Atu0034 SM00862 Transcriptional regulatory protein, C terminal Atu0045 SM00382 ATPases associated with a variety of cellular activities Atu0045 SM01086 C-terminal, D2-small domain, of ClpB protein Atu0050 SM00448 cheY-homologous receiver domain Atu0051 SM00387 Histidine kinase-like ATPases Atu0051 SM00388 His Kinase A (phosphoacceptor) domain Atu0052 SM00487 DEAD-like helicases superfamily Atu0052 SM00490 helicase superfamily c-terminal domain Atu0052 SM00847 Helicase associated domain (HA2) Add an annotation Atu0061 SM00341 Helicase and RNase D C-terminal Atu0061 SM00487 DEAD-like helicases superfamily Atu0061 SM00490 helicase superfamily c-terminal domain Atu0061 SM00956 Atu0061 Atu0065 SM00382 ATPases associated with a variety of cellular activities Atu0073 SM00382 ATPases associated with a variety of cellular activities Atu0078 SM00287 Bacterial SH3 domain homologues Atu0082 SM00316 Ribosomal protein S1-like RNA-binding domain Atu0082 SM00322 K homology RNA-binding domain Atu0084 SM01387 Atu0084 Atu0089 SM00316 Ribosomal protein S1-like RNA-binding domain Atu0089 SM00322 K homology RNA-binding domain Atu0093 SM00493 Atu0093 Atu0096 SM00382 ATPases associated with a variety of cellular activities Atu0106 SM00357 Cold shock protein domain Atu0109 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0110 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Atu0110 SM00474 3'-5' exonuclease Atu0110 SM00475 5'-3' exonuclease Atu0110 SM00479 Atu0110 Atu0110 SM00482 DNA polymerase A domain Atu0113 SM00387 Histidine kinase-like ATPases Atu0113 SM00388 His Kinase A (phosphoacceptor) domain Atu0114 SM00382 ATPases associated with a variety of cellular activities Atu0114 SM00448 cheY-homologous receiver domain Atu0121 SM00271 DnaJ molecular chaperone homology domain Atu0127 SM00382 ATPases associated with a variety of cellular activities Atu0132 SM01133 Atu0132 Atu0133 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Atu0150 SM00825 Beta-ketoacyl synthase Atu0157 SM00062 Bacterial periplasmic substrate-binding proteins Atu0159 SM00382 ATPases associated with a variety of cellular activities Atu0160 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0160 SM00866 Atu0160 Atu0165 SM00421 helix_turn_helix, Lux Regulon Atu0167 SM00342 helix_turn_helix, arabinose operon control protein Atu0168 SM00072 Guanylate kinase homologues. Atu0174 SM00382 ATPases associated with a variety of cellular activities Atu0176 SM00382 ATPases associated with a variety of cellular activities Atu0177 SM00382 ATPases associated with a variety of cellular activities Atu0182 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0182 SM00866 Atu0182 Atu0185 SM00851 MGS-like domain Atu0190 SM00382 ATPases associated with a variety of cellular activities Atu0193 SM01230 Atu0193 Atu0197 SM00382 ATPases associated with a variety of cellular activities Atu0210 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0215 SM00028 Tetratricopeptide repeats Atu0222 SM00858 Atu0222 Atu0233 SM00641 Glycosyl hydrolases family 25 Atu0235 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0239 SM00342 helix_turn_helix, arabinose operon control protein Atu0245 SM00530 Helix-turn-helix XRE-family like proteins Atu0248 SM00342 helix_turn_helix, arabinose operon control protein Atu0259 SM00873 B3/4 domain Atu0259 SM00874 tRNA synthetase B5 domain Atu0259 SM00896 Ferredoxin-fold anticodon binding domain Atu0264 SM00342 helix_turn_helix, arabinose operon control protein Atu0270 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu0271 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0271 SM00895 Atu0271 Atu0272 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0298 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Atu0301 SM00480 DNA polymerase III beta subunit Atu0304 SM01266 Atu0304 Atu0308 SM00382 ATPases associated with a variety of cellular activities Atu0311 SM00382 ATPases associated with a variety of cellular activities Atu0321 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Atu0321 SM01232 Atu0321 Atu0324 SM00382 ATPases associated with a variety of cellular activities Atu0324 SM00760 Bacterial dnaA protein helix-turn-helix domain Atu0325 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu0333 SM00382 ATPases associated with a variety of cellular activities Atu0338 SM00411 bacterial (prokaryotic) histone like domain Atu0341 SM00967 RNA 2'-O ribose methyltransferase substrate binding Atu0343 SM00387 Histidine kinase-like ATPases Atu0343 SM00388 His Kinase A (phosphoacceptor) domain Atu0343 SM00448 cheY-homologous receiver domain Atu0345 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Atu0345 SM00534 ATPase domain of DNA mismatch repair MUTS family Atu0346 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Atu0351 SM00932 Scaffold protein Nfu/NifU N terminal Atu0355 SM00563 Phosphate acyltransferases Atu0356 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu0359 SM01091 Transporter associated domain Atu0361 SM00530 Helix-turn-helix XRE-family like proteins Atu0373 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0373 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0387 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0387 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0388 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0388 SM00387 Histidine kinase-like ATPases Atu0391 SM00382 ATPases associated with a variety of cellular activities Atu0406 SM00382 ATPases associated with a variety of cellular activities Atu0410 SM00342 helix_turn_helix, arabinose operon control protein Atu0419 SM00387 Histidine kinase-like ATPases Atu0419 SM00388 His Kinase A (phosphoacceptor) domain Atu0423 SM00382 ATPases associated with a variety of cellular activities Atu0425 SM00448 cheY-homologous receiver domain Atu0425 SM00862 Transcriptional regulatory protein, C terminal Atu0443 SM00530 Helix-turn-helix XRE-family like proteins Atu0450 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Atu0465 SM00530 Helix-turn-helix XRE-family like proteins Atu0472 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Atu0479 SM00062 Bacterial periplasmic substrate-binding proteins Atu0484 SM00421 helix_turn_helix, Lux Regulon Atu0484 SM00448 cheY-homologous receiver domain Atu0494 SM00487 DEAD-like helicases superfamily Atu0494 SM00490 helicase superfamily c-terminal domain Atu0499 SM00671 Sel1-like repeats. Atu0514 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0516 SM00448 cheY-homologous receiver domain Atu0517 SM00073 Histidine Phosphotransfer domain Atu0517 SM00260 Two component signalling adaptor domain Atu0517 SM00387 Histidine kinase-like ATPases Atu0517 SM01231 Atu0517 Atu0518 SM00138 Methyltransferase, chemotaxis proteins Atu0519 SM00448 cheY-homologous receiver domain Atu0520 SM00448 cheY-homologous receiver domain Atu0524 SM00421 helix_turn_helix, Lux Regulon Atu0525 SM00421 helix_turn_helix, Lux Regulon Atu0526 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0526 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0527 SM00387 Histidine kinase-like ATPases Atu0527 SM00388 His Kinase A (phosphoacceptor) domain Atu0527 SM00448 cheY-homologous receiver domain Atu0535 SM00226 Low molecular weight phosphatase family Atu0551 SM00858 Atu0551 Atu0557 SM00382 ATPases associated with a variety of cellular activities Atu0573 SM00862 Transcriptional regulatory protein, C terminal Atu0590 SM00354 helix_turn _helix lactose operon repressor Atu0594 SM00642 Alpha-amylase domain Atu0595 SM00382 ATPases associated with a variety of cellular activities Atu0602 SM01230 Atu0602 Atu0608 SM00530 Helix-turn-helix XRE-family like proteins Atu0610 SM00382 ATPases associated with a variety of cellular activities Atu0614 SM00091 PAS domain Atu0614 SM00387 Histidine kinase-like ATPases Atu0614 SM00388 His Kinase A (phosphoacceptor) domain Atu0622 SM00849 Metallo-beta-lactamase superfamily Atu0624 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu0624 SM01240 Atu0624 Atu0626 SM00829 Enoylreductase Atu0628 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0628 SM00387 Histidine kinase-like ATPases Atu0629 SM00448 cheY-homologous receiver domain Atu0629 SM00862 Transcriptional regulatory protein, C terminal Atu0631 SM00852 Probable molybdopterin binding domain Atu0633 SM00028 Tetratricopeptide repeats Atu0646 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0646 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0646 SM01049 Atu0646 Atu0647 SM01209 Atu0647 Atu0647 SM01210 Atu0647 Atu0648 SM00316 Ribosomal protein S1-like RNA-binding domain Atu0648 SM00732 Likely ribonuclease with RNase H fold. Atu0662 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0662 SM00895 Atu0662 Atu0683 SM00883 Chaperonin 10 Kd subunit Atu0685 SM00904 Riboflavin kinase Atu0689 SM00363 S4 RNA-binding domain Atu0699 SM00853 MutL C terminal dimerisation domain Atu0699 SM01340 Atu0699 Atu0700 SM00448 cheY-homologous receiver domain Atu0701 SM00052 Putative diguanylate phosphodiesterase Atu0701 SM00267 diguanylate cyclase Atu0706 SM00346 helix_turn_helix isocitrate lyase regulation Atu0707 SM00421 helix_turn_helix, Lux Regulon Atu0721 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu0736 SM00363 S4 RNA-binding domain Atu0738 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0738 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0740 SM00344 helix_turn_helix ASNC type Atu0743 SM00530 Helix-turn-helix XRE-family like proteins Atu0745 SM00861 Transketolase, pyrimidine binding domain Atu0751 SM00382 ATPases associated with a variety of cellular activities Atu0756 SM00855 Phosphoglycerate mutase family Atu0758 SM00271 DnaJ molecular chaperone homology domain Atu0777 SM00886 Stress responsive A/B Barrel Domain Atu0778 SM00869 Autotransporter beta-domain Atu0784 SM00052 Putative diguanylate phosphodiesterase Atu0784 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu0784 SM00267 diguanylate cyclase Atu0791 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0791 SM00895 Atu0791 Atu0798 SM00478 endonuclease III Atu0801 SM00968 SMC proteins Flexible Hinge Domain Atu0807 SM00849 Metallo-beta-lactamase superfamily Atu0823 SM00382 ATPases associated with a variety of cellular activities Atu0825 SM00829 Enoylreductase Atu0826 SM00052 Putative diguanylate phosphodiesterase Atu0826 SM00267 diguanylate cyclase Atu0837 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0846 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0849 SM00953 Atu0849 Atu0850 SM00382 ATPases associated with a variety of cellular activities Atu0852 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0857 SM00822 Atu0857 Atu0864 SM00822 Atu0864 Atu0865 SM00342 helix_turn_helix, arabinose operon control protein Atu0872 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0872 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0888 SM00422 helix_turn_helix, mercury resistance Atu0893 SM00382 ATPases associated with a variety of cellular activities Atu0899 SM01130 Atu0899 Atu0901 SM00342 helix_turn_helix, arabinose operon control protein Atu0917 SM00760 Bacterial dnaA protein helix-turn-helix domain Atu0921 SM00387 Histidine kinase-like ATPases Atu0921 SM00388 His Kinase A (phosphoacceptor) domain Atu0938 SM00422 helix_turn_helix, mercury resistance Atu0939 SM00966 SpoVT / AbrB like domain Atu0944 SM00640 Glycosyl hydrolases family 32 Atu0947 SM00344 helix_turn_helix ASNC type Atu0953 SM00886 Stress responsive A/B Barrel Domain Atu0970 SM00448 cheY-homologous receiver domain Atu0970 SM00862 Transcriptional regulatory protein, C terminal Atu0971 SM00387 Histidine kinase-like ATPases Atu0971 SM00388 His Kinase A (phosphoacceptor) domain Atu0977 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Atu0978 SM00448 cheY-homologous receiver domain Atu0978 SM00862 Transcriptional regulatory protein, C terminal Atu0979 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0979 SM00387 Histidine kinase-like ATPases Atu0979 SM00388 His Kinase A (phosphoacceptor) domain Atu0982 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu0982 SM00387 Histidine kinase-like ATPases Atu0982 SM00388 His Kinase A (phosphoacceptor) domain Atu0987 SM00986 Uracil DNA glycosylase superfamily Atu0987 SM00987 UreE urease accessory protein, C-terminal domain Atu0989 SM00267 diguanylate cyclase Atu0996 SM00829 Enoylreductase Atu0999 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu0999 SM00924 MgtE intracellular N domain Atu1001 SM00046 Diacylglycerol kinase catalytic domain (presumed) Atu1024 SM01130 Atu1024 Atu1027 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu1029 SM01409 Atu1029 Atu1030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Atu1030 SM00954 Region found in RelA / SpoT proteins Atu1035 SM00358 Double-stranded RNA binding motif Atu1035 SM00535 Ribonuclease III family Atu1037 SM00419 helix_turn_helix, cAMP Regulatory protein Atu1038 SM00448 cheY-homologous receiver domain Atu1043 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Atu1047 SM00382 ATPases associated with a variety of cellular activities Atu1060 SM00267 diguanylate cyclase Atu1060 SM00448 cheY-homologous receiver domain Atu1064 SM00382 ATPases associated with a variety of cellular activities Atu1077 SM00382 ATPases associated with a variety of cellular activities Atu1080 SM01005 Alanine racemase, C-terminal domain Atu1081 SM00342 helix_turn_helix, arabinose operon control protein Atu1084 SM00382 ATPases associated with a variety of cellular activities Atu1085 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu1094 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Atu1095 SM00822 Atu1095 Atu1096 SM00823 Phosphopantetheine attachment site Atu1097 SM00825 Beta-ketoacyl synthase Atu1101 SM00072 Guanylate kinase homologues. Atu1103 SM00650 Ribosomal RNA adenine dimethylases Atu1112 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Atu1112 SM00267 diguanylate cyclase Atu1114 SM00052 Putative diguanylate phosphodiesterase Atu1114 SM00267 diguanylate cyclase Atu1115 SM00387 Histidine kinase-like ATPases Atu1115 SM00388 His Kinase A (phosphoacceptor) domain Atu1116 SM00421 helix_turn_helix, Lux Regulon Atu1116 SM00448 cheY-homologous receiver domain Atu1118 SM00382 ATPases associated with a variety of cellular activities Atu1119 SM00267 diguanylate cyclase Atu1122 SM00562 Atu1122 Atu1129 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Atu1129 SM00465 GIY-YIG type nucleases (URI domain) Atu1136 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Atu1149 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Atu1151 SM00474 3'-5' exonuclease Atu1158 SM00434 DNA Topoisomerase IV Atu1161 SM01004 Delta-aminolevulinic acid dehydratase Atu1163 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu1180 SM00411 bacterial (prokaryotic) histone like domain Atu1181 SM00422 helix_turn_helix, mercury resistance Atu1183 SM01311 Atu1183 Atu1197 SM00422 helix_turn_helix, mercury resistance Atu1200 SM00382 ATPases associated with a variety of cellular activities Atu1201 SM00382 ATPases associated with a variety of cellular activities Atu1207 SM00267 diguanylate cyclase Atu1215 SM00450 Rhodanese Homology Domain Atu1216 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Atu1244 SM00859 Semialdehyde dehydrogenase, NAD binding domain Atu1250 SM00881 CoA binding domain Atu1254 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu1255 SM00822 Atu1255 Atu1257 SM00267 diguanylate cyclase Atu1259 SM00382 ATPases associated with a variety of cellular activities Atu1259 SM00994 ClpX C4-type zinc finger Atu1259 SM01086 C-terminal, D2-small domain, of ClpB protein Atu1261 SM00382 ATPases associated with a variety of cellular activities Atu1261 SM00464 Found in ATP-dependent protease La (LON) Atu1262 SM00411 bacterial (prokaryotic) histone like domain Atu1275 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Atu1276 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Atu1285 SM00849 Metallo-beta-lactamase superfamily Atu1290 SM00382 ATPases associated with a variety of cellular activities Atu1292 SM00481 DNA polymerase alpha chain like domain Atu1296 SM00448 cheY-homologous receiver domain Atu1297 SM00267 diguanylate cyclase Atu1297 SM00448 cheY-homologous receiver domain Atu1303 SM00316 Ribosomal protein S1-like RNA-binding domain Atu1303 SM00955 Atu1303 Atu1304 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Atu1304 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Atu1304 SM00493 Atu1304 Atu1306 SM01207 Atu1306 Atu1316 SM00732 Likely ribonuclease with RNase H fold. Atu1317 SM00849 Metallo-beta-lactamase superfamily Atu1324 SM00845 GatB domain Atu1330 SM00878 Biotin carboxylase C-terminal domain Atu1335 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu1340 SM00646 Atu1340 Atu1342 SM00937 Atu1342 Atu1347 SM00889 Elongation factor G, domain IV Atu1353 SM00905 Dihydroneopterin aldolase Atu1358 SM00855 Phosphoglycerate mutase family Atu1362 SM00091 PAS domain Atu1362 SM00387 Histidine kinase-like ATPases Atu1362 SM00388 His Kinase A (phosphoacceptor) domain Atu1362 SM00448 cheY-homologous receiver domain Atu1364 SM00382 ATPases associated with a variety of cellular activities Atu1364 SM01086 C-terminal, D2-small domain, of ClpB protein Atu1380 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Atu1387 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu1387 SM00895 Atu1387 Atu1388 SM00062 Bacterial periplasmic substrate-binding proteins Atu1391 SM00382 ATPases associated with a variety of cellular activities Atu1396 SM00382 ATPases associated with a variety of cellular activities Atu1399 SM00062 Bacterial periplasmic substrate-binding proteins Atu1400 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Atu1401 SM00382 ATPases associated with a variety of cellular activities Atu1405 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu1406 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu1408 SM00829 Enoylreductase Atu1410 SM00382 ATPases associated with a variety of cellular activities Atu1411 SM00382 ATPases associated with a variety of cellular activities Atu1419 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu1419 SM00895 Atu1419 Atu1422 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu1426 SM01192 Atu1426 Atu1426 SM01193 Atu1426 Atu1430 SM00861 Transketolase, pyrimidine binding domain Atu1436 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu1438 SM00342 helix_turn_helix, arabinose operon control protein Atu1445 SM00387 Histidine kinase-like ATPases Atu1445 SM00388 His Kinase A (phosphoacceptor) domain Atu1446 SM00382 ATPases associated with a variety of cellular activities Atu1446 SM00448 cheY-homologous receiver domain Atu1447 SM00091 PAS domain Atu1447 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu1447 SM00387 Histidine kinase-like ATPases Atu1447 SM00388 His Kinase A (phosphoacceptor) domain Atu1448 SM00382 ATPases associated with a variety of cellular activities Atu1448 SM00448 cheY-homologous receiver domain Atu1487 SM00867 YceI-like domain Atu1492 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu1494 SM00849 Metallo-beta-lactamase superfamily Atu1499 SM00936 Penicillin-binding protein 5, C-terminal domain Atu1507 SM00434 DNA Topoisomerase IV Atu1509 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu1520 SM00382 ATPases associated with a variety of cellular activities Atu1522 SM00354 helix_turn _helix lactose operon repressor Atu1526 SM01350 Atu1526 Atu1546 SM00422 helix_turn_helix, mercury resistance Atu1547 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu1547 SM00924 MgtE intracellular N domain Atu1557 SM00829 Enoylreductase Atu1563 SM01323 Atu1563 Atu1571 SM00971 Serine acetyltransferase, N-terminal Atu1577 SM00062 Bacterial periplasmic substrate-binding proteins Atu1580 SM00382 ATPases associated with a variety of cellular activities Atu1595 SM00829 Enoylreductase Atu1596 SM00825 Beta-ketoacyl synthase Atu1601 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu1602 SM00100 Cyclic nucleotide-monophosphate binding domain Atu1602 SM00419 helix_turn_helix, cAMP Regulatory protein Atu1622 SM00387 Histidine kinase-like ATPases Atu1622 SM00433 TopoisomeraseII Atu1629 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu1630 SM00155 Phospholipase D. Active site motifs. Atu1631 SM00448 cheY-homologous receiver domain Atu1646 SM00382 ATPases associated with a variety of cellular activities Atu1648 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu1652 SM00919 Malic enzyme, NAD binding domain Atu1652 SM01274 Atu1652 Atu1675 SM00421 helix_turn_helix, Lux Regulon Atu1690 SM00852 Probable molybdopterin binding domain Atu1691 SM00267 diguanylate cyclase Atu1695 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu1700 SM00257 Lysin motif Atu1711 SM00836 DALR anticodon binding domain Atu1711 SM01016 Arginyl tRNA synthetase N terminal dom Atu1712 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Atu1715 SM00671 Sel1-like repeats. Atu1729 SM00852 Probable molybdopterin binding domain Atu1735 SM00530 Helix-turn-helix XRE-family like proteins Atu1738 SM00382 ATPases associated with a variety of cellular activities Atu1743 SM00903 Flavin reductase like domain Atu1746 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Atu1747 SM01234 Atu1747 Atu1752 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu1767 SM00342 helix_turn_helix, arabinose operon control protein Atu1769 SM00938 Nitrogen regulatory protein P-II Atu1770 SM01230 Atu1770 Atu1778 SM00487 DEAD-like helicases superfamily Atu1778 SM00490 helicase superfamily c-terminal domain Atu1778 SM00982 Atu1778 Atu1778 SM01058 CarD-like/TRCF domain Atu1780 SM00487 DEAD-like helicases superfamily Atu1780 SM00490 helicase superfamily c-terminal domain Atu1788 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu1788 SM00895 Atu1788 Atu1792 SM00382 ATPases associated with a variety of cellular activities Atu1798 SM00248 ankyrin repeats Atu1803 SM00357 Cold shock protein domain Atu1816 SM00382 ATPases associated with a variety of cellular activities Atu1823 SM00382 ATPases associated with a variety of cellular activities Atu1833 SM00487 DEAD-like helicases superfamily Atu1833 SM00490 helicase superfamily c-terminal domain Atu1837 SM00530 Helix-turn-helix XRE-family like proteins Atu1841 SM00998 Adenylosuccinate lyase C-terminus Atu1845 SM01211 Atu1845 Atu1848 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu1860 SM00363 S4 RNA-binding domain Atu1860 SM01390 Atu1860 Atu1862 SM00382 ATPases associated with a variety of cellular activities Atu1870 SM01329 Atu1870 Atu1873 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Atu1874 SM00382 ATPases associated with a variety of cellular activities Atu1879 SM00062 Bacterial periplasmic substrate-binding proteins Atu1879 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Atu1883 SM00028 Tetratricopeptide repeats Atu1884 SM00062 Bacterial periplasmic substrate-binding proteins Atu1885 SM00344 helix_turn_helix ASNC type Atu1886 SM00986 Uracil DNA glycosylase superfamily Atu1886 SM00987 UreE urease accessory protein, C-terminal domain Atu1887 SM00318 Staphylococcal nuclease homologues Atu1888 SM00387 Histidine kinase-like ATPases Atu1888 SM00388 His Kinase A (phosphoacceptor) domain Atu1898 SM00382 ATPases associated with a variety of cellular activities Atu1902 SM00861 Transketolase, pyrimidine binding domain Atu1907 SM00382 ATPases associated with a variety of cellular activities Atu1912 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu1912 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu1912 SM01049 Atu1912 Atu1914 SM00382 ATPases associated with a variety of cellular activities Atu1915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Atu1923 SM00662 RNA polymerases D Atu1935 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Atu1936 SM01374 Atu1936 Atu1940 SM00322 K homology RNA-binding domain Atu1943 SM01382 Atu1943 Atu1943 SM01383 Atu1943 Atu1947 SM01403 Atu1947 Atu1949 SM00838 Elongation factor G C-terminus Atu1949 SM00889 Elongation factor G, domain IV Atu1954 SM00421 helix_turn_helix, Lux Regulon Atu1955 SM00663 RNA polymerase I subunit A N-terminus Atu1960 SM00649 Ribosomal protein L11/L12 Atu1961 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Atu1961 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Atu1984 SM00387 Histidine kinase-like ATPases Atu1984 SM00448 cheY-homologous receiver domain Atu1985 SM00448 cheY-homologous receiver domain Atu1986 SM00387 Histidine kinase-like ATPases Atu1987 SM00448 cheY-homologous receiver domain Atu1988 SM00448 cheY-homologous receiver domain Atu1988 SM00911 HWE histidine kinase Atu1989 SM00448 cheY-homologous receiver domain Atu1990 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Atu1990 SM00387 Histidine kinase-like ATPases Atu1990 SM00388 His Kinase A (phosphoacceptor) domain Atu1993 SM00967 RNA 2'-O ribose methyltransferase substrate binding Atu2001 SM00487 DEAD-like helicases superfamily Atu2001 SM00490 helicase superfamily c-terminal domain Atu2006 SM00271 DnaJ molecular chaperone homology domain Atu2010 SM00267 diguanylate cyclase Atu2012 SM00382 ATPases associated with a variety of cellular activities Atu2021 SM00342 helix_turn_helix, arabinose operon control protein Atu2022 SM00829 Enoylreductase Atu2025 SM00421 helix_turn_helix, Lux Regulon Atu2025 SM00422 helix_turn_helix, mercury resistance Atu2028 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu2034 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu2042 SM00822 Atu2042 Atu2043 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Atu2044 SM00244 prohibitin homologues Atu2045 SM00244 prohibitin homologues Atu2075 SM00260 Two component signalling adaptor domain Atu2077 SM00479 Atu2077 Atu2082 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Atu2082 SM00292 breast cancer carboxy-terminal domain Atu2082 SM00532 Ligase N family Atu2086 SM00864 Tubulin/FtsZ family, GTPase domain Atu2086 SM00865 Tubulin/FtsZ family, C-terminal domain Atu2087 SM00842 Cell division protein FtsA Atu2091 SM00267 diguanylate cyclase Atu2113 SM00644 Atu2113 Atu2114 SM00271 DnaJ molecular chaperone homology domain Atu2121 SM00641 Glycosyl hydrolases family 25 Atu2124 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu2125 SM00382 ATPases associated with a variety of cellular activities Atu2141 SM00530 Helix-turn-helix XRE-family like proteins Atu2142 SM01230 Atu2142 Atu2150 SM00382 ATPases associated with a variety of cellular activities Atu2151 SM00829 Enoylreductase Atu2153 SM00382 ATPases associated with a variety of cellular activities Atu2155 SM01018 B12 binding domain Atu2165 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Atu2165 SM00448 cheY-homologous receiver domain Atu2165 SM00911 HWE histidine kinase Atu2168 SM00400 zinc finger Atu2168 SM00493 Atu2168 Atu2170 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Atu2173 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu2173 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu2177 SM00850 LytTr DNA-binding domain Atu2178 SM00851 MGS-like domain Atu2178 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Atu2179 SM00267 diguanylate cyclase Atu2180 SM00986 Uracil DNA glycosylase superfamily Atu2180 SM00987 UreE urease accessory protein, C-terminal domain Atu2181 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu2184 SM00344 helix_turn_helix ASNC type Atu2187 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu2197 SM00052 Putative diguanylate phosphodiesterase Atu2200 SM00357 Cold shock protein domain Atu2201 SM00849 Metallo-beta-lactamase superfamily Atu2205 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu2206 SM00448 cheY-homologous receiver domain Atu2206 SM00862 Transcriptional regulatory protein, C terminal Atu2207 SM00387 Histidine kinase-like ATPases Atu2207 SM00388 His Kinase A (phosphoacceptor) domain Atu2218 SM01400 Atu2218 Atu2221 SM01259 Atu2221 Atu2223 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu2223 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu2226 SM00052 Putative diguanylate phosphodiesterase Atu2226 SM00267 diguanylate cyclase Atu2228 SM00052 Putative diguanylate phosphodiesterase Atu2228 SM00091 PAS domain Atu2228 SM00267 diguanylate cyclase Atu2228 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu2241 SM00382 ATPases associated with a variety of cellular activities Atu2242 SM00382 ATPases associated with a variety of cellular activities Atu2264 SM00917 LeuA allosteric (dimerisation) domain Atu2278 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu2279 SM00382 ATPases associated with a variety of cellular activities Atu2285 SM00421 helix_turn_helix, Lux Regulon Atu2291 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Atu2295 SM00642 Alpha-amylase domain Atu2309 SM01092 CO dehydrogenase flavoprotein C-terminal domain Atu2310 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Atu2332 SM00091 PAS domain Atu2332 SM00387 Histidine kinase-like ATPases Atu2332 SM00388 His Kinase A (phosphoacceptor) domain Atu2332 SM00448 cheY-homologous receiver domain Atu2333 SM00487 DEAD-like helicases superfamily Atu2333 SM00490 helicase superfamily c-terminal domain Atu2340 SM00460 Transglutaminase/protease-like homologues Atu2347 SM00382 ATPases associated with a variety of cellular activities Atu2354 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu2360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu2360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu2365 SM00062 Bacterial periplasmic substrate-binding proteins Atu2366 SM00382 ATPases associated with a variety of cellular activities Atu2371 SM00633 Glycosyl hydrolase family 10 Atu2388 SM00382 ATPases associated with a variety of cellular activities Atu2394 SM00100 Cyclic nucleotide-monophosphate binding domain Atu2394 SM00419 helix_turn_helix, cAMP Regulatory protein Atu2395 SM00849 Metallo-beta-lactamase superfamily Atu2398 SM00988 UreE urease accessory protein, N-terminal domain Atu2410 SM00382 ATPases associated with a variety of cellular activities Atu2416 SM01230 Atu2416 Atu2418 SM00387 Histidine kinase-like ATPases Atu2418 SM00388 His Kinase A (phosphoacceptor) domain Atu2418 SM00448 cheY-homologous receiver domain Atu2419 SM00421 helix_turn_helix, Lux Regulon Atu2419 SM00448 cheY-homologous receiver domain Atu2424 SM00382 ATPases associated with a variety of cellular activities Atu2425 SM00382 ATPases associated with a variety of cellular activities Atu2434 SM00448 cheY-homologous receiver domain Atu2434 SM00862 Transcriptional regulatory protein, C terminal Atu2443 SM00363 S4 RNA-binding domain Atu2447 SM00788 Adenylosuccinate synthetase Atu2455 SM00986 Uracil DNA glycosylase superfamily Atu2455 SM00987 UreE urease accessory protein, C-terminal domain Atu2458 SM00382 ATPases associated with a variety of cellular activities Atu2465 SM00387 Histidine kinase-like ATPases Atu2465 SM00388 His Kinase A (phosphoacceptor) domain Atu2466 SM00448 cheY-homologous receiver domain Atu2466 SM00862 Transcriptional regulatory protein, C terminal Atu2476 SM00382 ATPases associated with a variety of cellular activities Atu2486 SM00155 Phospholipase D. Active site motifs. Atu2488 SM00947 Carbonic anhydrase Atu2490 SM00859 Semialdehyde dehydrogenase, NAD binding domain Atu2493 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Atu2493 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Atu2495 SM00903 Flavin reductase like domain Atu2503 SM01130 Atu2503 Atu2504 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu2504 SM00895 Atu2504 Atu2508 SM00382 ATPases associated with a variety of cellular activities Atu2514 SM00382 ATPases associated with a variety of cellular activities Atu2515 SM00382 ATPases associated with a variety of cellular activities Atu2531 SM00903 Flavin reductase like domain Atu2532 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu2535 SM00387 Histidine kinase-like ATPases Atu2535 SM00388 His Kinase A (phosphoacceptor) domain Atu2536 SM00448 cheY-homologous receiver domain Atu2536 SM00862 Transcriptional regulatory protein, C terminal Atu2553 SM00841 Elongation factor P, C-terminal Atu2553 SM01185 Atu2553 Atu2563 SM00382 ATPases associated with a variety of cellular activities Atu2578 SM00100 Cyclic nucleotide-monophosphate binding domain Atu2579 SM00849 Metallo-beta-lactamase superfamily Atu2580 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Atu2582 SM00984 UDP binding domain Atu2586 SM00382 ATPases associated with a variety of cellular activities Atu2600 SM00382 ATPases associated with a variety of cellular activities Atu2606 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu2606 SM00866 Atu2606 Atu2611 SM00014 Acid phosphatase homologues Atu2617 SM00260 Two component signalling adaptor domain Atu2618 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu2618 SM00091 PAS domain Atu2618 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu2618 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu2622 SM00382 ATPases associated with a variety of cellular activities Atu2627 SM00487 DEAD-like helicases superfamily Atu2627 SM00490 helicase superfamily c-terminal domain Atu2636 SM00861 Transketolase, pyrimidine binding domain Atu2637 SM00881 CoA binding domain Atu2660 SM01152 Atu2660 Atu2663 SM00838 Elongation factor G C-terminus Atu2665 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu2670 SM00382 ATPases associated with a variety of cellular activities Atu2677 SM00226 Low molecular weight phosphatase family Atu2680 SM00382 ATPases associated with a variety of cellular activities Atu2686 SM00382 ATPases associated with a variety of cellular activities Atu2691 SM00267 diguanylate cyclase Atu2693 SM00382 ATPases associated with a variety of cellular activities Atu2693 SM00962 SRP54-type protein, GTPase domain Atu2693 SM00963 SRP54-type protein, helical bundle domain Atu2694 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu2696 SM00849 Metallo-beta-lactamase superfamily Atu2697 SM00382 ATPases associated with a variety of cellular activities Atu2697 SM00962 SRP54-type protein, GTPase domain Atu2697 SM00963 SRP54-type protein, helical bundle domain Atu2698 SM00830 Chorismate mutase type II Atu2705 SM00382 ATPases associated with a variety of cellular activities Atu2712 SM00382 ATPases associated with a variety of cellular activities Atu2716 SM00382 ATPases associated with a variety of cellular activities Atu2717 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Atu2725 SM00420 helix_turn_helix, Deoxyribose operon repressor Atu2725 SM01134 Atu2725 Atu2726 SM00878 Biotin carboxylase C-terminal domain Atu2727 SM00421 helix_turn_helix, Lux Regulon Atu2728 SM00382 ATPases associated with a variety of cellular activities Atu2730 SM01068 Putative carbohydrate binding domain Atu2740 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu2740 SM00895 Atu2740 Atu2752 SM00363 S4 RNA-binding domain Atu2753 SM00490 helicase superfamily c-terminal domain Atu2757 SM00938 Nitrogen regulatory protein P-II Atu2759 SM00382 ATPases associated with a variety of cellular activities Atu2759 SM00843 Atu2759 Atu2762 SM00100 Cyclic nucleotide-monophosphate binding domain Atu2763 SM00448 cheY-homologous receiver domain Atu2763 SM00862 Transcriptional regulatory protein, C terminal Atu2765 SM01058 CarD-like/TRCF domain Atu2770 SM00822 Atu2770 Atu2774 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Atu2774 SM00245 tail specific protease Atu2780 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Atu2791 SM01329 Atu2791 Atu2805 SM00833 Cobalamin synthesis protein cobW C-terminal domain Atu2811 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu2819 SM00382 ATPases associated with a variety of cellular activities Atu2821 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu2821 SM00895 Atu2821 Atu2822 SM00858 Atu2822 Atu2823 SM00798 AICARFT/IMPCHase bienzyme Atu2823 SM00851 MGS-like domain Atu2828 SM00470 ParB-like nuclease domain Atu2831 SM01228 Atu2831 Atu2833 SM00357 Cold shock protein domain Atu2833 SM00382 ATPases associated with a variety of cellular activities Atu2833 SM00959 Rho termination factor, N-terminal domain Atu3288 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Atu3288 SM01232 Atu3288 Atu3317 SM00563 Phosphate acyltransferases Atu3471 SM00387 Histidine kinase-like ATPases Atu3471 SM00388 His Kinase A (phosphoacceptor) domain Atu3650 SM00052 Putative diguanylate phosphodiesterase Atu3679 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu3727 SM00849 Metallo-beta-lactamase superfamily Atu3951 SM00382 ATPases associated with a variety of cellular activities Atu4130 SM00382 ATPases associated with a variety of cellular activities Atu4130 SM00464 Found in ATP-dependent protease La (LON) Atu4155 SM00849 Metallo-beta-lactamase superfamily Atu4169 SM00267 diguanylate cyclase Atu4169 SM00448 cheY-homologous receiver domain Atu4230 SM00091 PAS domain Atu4235 SM01086 C-terminal, D2-small domain, of ClpB protein Atu4576 SM00382 ATPases associated with a variety of cellular activities Atu4586 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Atu4690 SM01329 Atu4690 Atu4711 SM00382 ATPases associated with a variety of cellular activities Atu5028 SM00388 His Kinase A (phosphoacceptor) domain Atu5065 SM00490 helicase superfamily c-terminal domain Atu8147 SM00257 Lysin motif Atu8165 SM00992 Hemimethylated DNA-binding protein YccV like