locus-tag	class	description
At1D1609_RS00005	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
At1D1609_RS00010	COG0424	maF-like protein
At1D1609_RS00015	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
At1D1609_RS00020	COG0237	dephospho-CoA kinase activity
At1D1609_RS00030	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
At1D1609_RS00035	COG3030	protein affecting phage T7 exclusion by the F plasmid
At1D1609_RS00045	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
At1D1609_RS00070	COG0179	Fumarylacetoacetate (FAA) hydrolase
At1D1609_RS00085	COG0135	phosphoribosylanthranilate isomerase activity
At1D1609_RS00090	COG0133	tryptophan synthase activity
At1D1609_RS00095	COG0159	tryptophan synthase activity
At1D1609_RS00100	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
At1D1609_RS00115	COG1074	ATP-dependent DNA helicase activity
At1D1609_RS00125	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
At1D1609_RS00135	COG2205	protein histidine kinase activity
At1D1609_RS00145	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
At1D1609_RS00150	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D1609_RS00155	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
At1D1609_RS00155	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D1609_RS00160	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
At1D1609_RS00165	COG0642	Histidine kinase
At1D1609_RS00170	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS00175	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
At1D1609_RS00185	COG1072	(Pantothenic acid kinase))
At1D1609_RS00190	COG0140	phosphoribosyl-ATP diphosphatase activity
At1D1609_RS00195	COG0107	imidazoleglycerol-phosphate synthase activity
At1D1609_RS00200	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
At1D1609_RS00205	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
At1D1609_RS00215	COG0131	Imidazoleglycerol-phosphate dehydratase
At1D1609_RS00220	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
At1D1609_RS00225	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
At1D1609_RS00235	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
At1D1609_RS00250	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
At1D1609_RS00260	COG1643	Atp-dependent helicase
At1D1609_RS00305	COG0514	ATP-dependent DNA helicase (RecQ)
At1D1609_RS00330	COG1072	(Pantothenic acid kinase))
At1D1609_RS00340	COG1780	Probably involved in ribonucleotide reductase function
At1D1609_RS00360	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
At1D1609_RS00385	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_RS00395	COG2813	Specifically methylates the guanine in position
At1D1609_RS00400	COG1185	polyribonucleotide nucleotidyltransferase activity
At1D1609_RS00405	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
At1D1609_RS00410	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
At1D1609_RS00415	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
At1D1609_RS00420	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
At1D1609_RS00420	COG3064	Membrane
At1D1609_RS00435	COG0779	Required for maturation of 30S ribosomal subunits
At1D1609_RS00440	COG2814	Major facilitator Superfamily
At1D1609_RS00445	COG3385	transposase activity
At1D1609_RS00450	COG2951	lytic endotransglycosylase activity
At1D1609_RS00455	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
At1D1609_RS00465	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
At1D1609_RS00470	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
At1D1609_RS00485	COG2816	NAD+ diphosphatase activity
At1D1609_RS00490	COG1605	Chorismate mutase
At1D1609_RS00490	COG0077	Prephenate dehydratase
At1D1609_RS00495	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
At1D1609_RS00500	COG3474	cytochrome
At1D1609_RS00510	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D1609_RS00515	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
At1D1609_RS00525	COG1278	Cold shock
At1D1609_RS00530	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D1609_RS00540	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
At1D1609_RS00540	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
At1D1609_RS00545	COG0333	Belongs to the bacterial ribosomal protein bL32 family
At1D1609_RS00580	COG2900	Belongs to the SlyX family
At1D1609_RS00590	COG0484	heat shock protein binding
At1D1609_RS00595	COG0443	Heat shock 70 kDa protein
At1D1609_RS00615	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
At1D1609_RS00620	COG1744	ABC transporter substrate-binding protein PnrA-like
At1D1609_RS00625	COG3845	ABC transporter
At1D1609_RS00630	COG1079	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS00635	COG1079	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS00640	COG0295	cytidine deaminase activity
At1D1609_RS00645	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
At1D1609_RS00650	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
At1D1609_RS00655	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
At1D1609_RS00665	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
At1D1609_RS00670	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
At1D1609_RS00675	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
At1D1609_RS00685	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
At1D1609_RS00690	COG1845	cytochrome c oxidase, subunit III
At1D1609_RS00695	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
At1D1609_RS00705	COG0477	Major facilitator Superfamily
At1D1609_RS00715	COG0067	glutamate synthase
At1D1609_RS00715	COG0070	glutamate synthase
At1D1609_RS00715	COG0069	glutamate synthase activity
At1D1609_RS00720	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
At1D1609_RS00735	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
At1D1609_RS00745	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D1609_RS00780	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_RS00800	COG0848	biopolymer transport protein
At1D1609_RS00810	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D1609_RS00825	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D1609_RS00830	COG3454	Phosphonate metabolism
At1D1609_RS00835	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D1609_RS00840	COG3639	organic phosphonate transmembrane transporter activity
At1D1609_RS00845	COG3639	organic phosphonate transmembrane transporter activity
At1D1609_RS00850	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
At1D1609_RS00855	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
At1D1609_RS00865	COG4778	phosphonate C-P lyase system protein PhnL
At1D1609_RS00870	COG4107	phosphonate C-P lyase system protein PhnK
At1D1609_RS00875	COG3627	carbon phosphorus lyase activity
At1D1609_RS00880	COG3626	phosphonate metabolism
At1D1609_RS00885	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
At1D1609_RS00890	COG3624	Phosphonate C-P lyase system protein PhnG
At1D1609_RS00895	COG2188	Transcriptional regulator
At1D1609_RS00900	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
At1D1609_RS00905	COG0837	glucose binding
At1D1609_RS00910	COG1803	Methylglyoxal synthase
At1D1609_RS00915	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
At1D1609_RS00925	COG4174	ABC transporter (Permease)
At1D1609_RS00930	COG4239	(ABC) transporter, permease
At1D1609_RS00935	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS00940	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS00945	COG0174	glutamine synthetase
At1D1609_RS00950	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS00955	COG3265	gluconokinase activity
At1D1609_RS00960	COG1174	glycine betaine transport
At1D1609_RS00965	COG1125	glycine betaine transport
At1D1609_RS00970	COG1174	glycine betaine transport
At1D1609_RS00975	COG1732	Glycine betaine
At1D1609_RS00985	COG1959	2 iron, 2 sulfur cluster binding
At1D1609_RS00990	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1609_RS01005	COG0697	spore germination
At1D1609_RS01020	COG0791	NLP P60 protein
At1D1609_RS01030	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
At1D1609_RS01035	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
At1D1609_RS01070	COG4964	Belongs to the GSP D family
At1D1609_RS01120	COG3422	double-strand break repair
At1D1609_RS01125	COG3757	hydrolase, family 25
At1D1609_RS01130	COG0697	spore germination
At1D1609_RS01135	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1609_RS01165	COG0481	GTPase activity
At1D1609_RS01170	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1609_RS01185	COG1396	sequence-specific DNA binding
At1D1609_RS01200	COG2169	Transcriptional regulator
At1D1609_RS01200	COG1917	Cupin 2, conserved barrel domain protein
At1D1609_RS01205	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D1609_RS01230	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
At1D1609_RS01235	COG0291	Belongs to the bacterial ribosomal protein bL35 family
At1D1609_RS01240	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
At1D1609_RS01250	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
At1D1609_RS01255	COG0072	phenylalanine-tRNA ligase activity
At1D1609_RS01255	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D1609_RS01260	COG0667	Aldo Keto reductase
At1D1609_RS01280	COG4977	sequence-specific DNA binding
At1D1609_RS01305	COG1570	exodeoxyribonuclease VII activity
At1D1609_RS01310	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1609_RS01320	COG1846	Transcriptional regulator
At1D1609_RS01325	COG0697	spore germination
At1D1609_RS01330	COG2309	aminopeptidase activity
At1D1609_RS01340	COG1393	Belongs to the ArsC family
At1D1609_RS01355	COG1309	transcriptional regulator
At1D1609_RS01385	COG1902	pentaerythritol trinitrate reductase activity
At1D1609_RS01395	COG0604	alcohol dehydrogenase
At1D1609_RS01405	COG0084	hydrolase, TatD family'
At1D1609_RS01425	COG1074	ATP-dependent DNA helicase activity
At1D1609_RS01520	COG5489	Protein of unknown function (DUF736)
At1D1609_RS01555	COG1192	Involved in chromosome partitioning
At1D1609_RS01600	COG4962	Type ii secretion system protein e
At1D1609_RS01615	COG3451	type IV secretory pathway VirB4
At1D1609_RS01630	COG3846	protein secretion by the type IV secretion system
At1D1609_RS01645	COG2948	multi-organism process
At1D1609_RS01655	COG2207	Transcriptional regulator
At1D1609_RS01665	COG1335	isochorismatase
At1D1609_RS01700	COG0518	GMP synthase (glutamine-hydrolyzing) activity
At1D1609_RS01700	COG0519	Catalyzes the synthesis of GMP from XMP
At1D1609_RS01715	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
At1D1609_RS01745	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
At1D1609_RS01755	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
At1D1609_RS01765	COG1968	undecaprenyl-diphosphatase activity
At1D1609_RS01790	COG0284	orotidine-5'-phosphate decarboxylase activity
At1D1609_RS01800	COG3963	phosphatidate phosphatase activity
At1D1609_RS01810	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
At1D1609_RS01815	COG0792	nuclease activity
At1D1609_RS01830	COG1175	transmembrane transport
At1D1609_RS01840	COG3842	ATPase activity
At1D1609_RS01850	COG0189	ligase activity
At1D1609_RS01860	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
At1D1609_RS01865	COG1280	lysine exporter protein (LysE YggA)
At1D1609_RS01870	COG0756	dUTP diphosphatase activity
At1D1609_RS01875	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
At1D1609_RS01880	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
At1D1609_RS01895	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
At1D1609_RS01900	COG2226	methyltransferase
At1D1609_RS01905	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
At1D1609_RS01910	COG1024	Enoyl-CoA hydratase
At1D1609_RS01915	COG0268	Binds directly to 16S ribosomal RNA
At1D1609_RS01920	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
At1D1609_RS01925	COG0635	Involved in the biosynthesis of porphyrin-containing compound
At1D1609_RS01930	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
At1D1609_RS01935	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
At1D1609_RS01940	COG1420	regulation of RNA biosynthetic process
At1D1609_RS01945	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
At1D1609_RS01950	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D1609_RS01955	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
At1D1609_RS01965	COG1137	ATPase activity
At1D1609_RS01970	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
At1D1609_RS01980	COG0616	signal peptide processing
At1D1609_RS01985	COG0776	regulation of translation
At1D1609_RS02000	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
At1D1609_RS02005	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
At1D1609_RS02020	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
At1D1609_RS02025	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
At1D1609_RS02030	COG0728	peptidoglycan biosynthetic process
At1D1609_RS02040	COG0180	Tryptophanyl-tRNA synthetase
At1D1609_RS02050	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
At1D1609_RS02055	COG1214	PFAM Peptidase M22, glycoprotease
At1D1609_RS02060	COG0456	acetyltransferase
At1D1609_RS02075	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
At1D1609_RS02080	COG1702	phosphate starvation-inducible protein PhoH
At1D1609_RS02085	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
At1D1609_RS02095	COG0815	Transfers the fatty acyl group on membrane lipoproteins
At1D1609_RS02100	COG1396	sequence-specific DNA binding
At1D1609_RS02105	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
At1D1609_RS02110	COG0220	tRNA (guanine-N7-)-methyltransferase activity
At1D1609_RS02115	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_RS02125	COG0242	peptide deformylase activity
At1D1609_RS02130	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
At1D1609_RS02135	COG0101	tRNA pseudouridine synthase activity
At1D1609_RS02145	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D1609_RS02150	COG2171	N-acyltransferase activity
At1D1609_RS02160	COG0840	transmembrane signaling receptor activity
At1D1609_RS02165	COG1957	nucleoside hydrolase
At1D1609_RS02170	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D1609_RS02195	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
At1D1609_RS02205	COG0218	Necessary for normal cell division and for the maintenance of normal septation
At1D1609_RS02210	COG0706	membrane insertase activity
At1D1609_RS02215	COG0594	ribonuclease P activity
At1D1609_RS02220	COG0230	Belongs to the bacterial ribosomal protein bL34 family
At1D1609_RS02225	COG0840	transmembrane signaling receptor activity
At1D1609_RS02245	COG2226	methyltransferase
At1D1609_RS02250	COG3842	ATPase activity
At1D1609_RS02255	COG1175	transmembrane transport
At1D1609_RS02260	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS02275	COG0427	acetyl-CoA hydrolase
At1D1609_RS02285	COG3938	Belongs to the proline racemase family
At1D1609_RS02290	COG0418	dihydroorotase activity
At1D1609_RS02295	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
At1D1609_RS02315	COG0166	Belongs to the GPI family
At1D1609_RS02320	COG0318	PFAM AMP-dependent synthetase and ligase
At1D1609_RS02325	COG3842	ATPase activity
At1D1609_RS02330	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1609_RS02335	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1609_RS02340	COG4774	siderophore transport
At1D1609_RS02400	COG2326	polyphosphate kinase activity
At1D1609_RS02405	COG5002	protein histidine kinase activity
At1D1609_RS02410	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
At1D1609_RS02415	COG0573	inorganic phosphate transmembrane transporter activity
At1D1609_RS02425	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
At1D1609_RS02430	COG0704	Plays a role in the regulation of phosphate uptake
At1D1609_RS02435	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS02450	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
At1D1609_RS02455	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
At1D1609_RS02465	COG2967	ApaG domain
At1D1609_RS02475	COG0717	Belongs to the dCTP deaminase family
At1D1609_RS02485	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
At1D1609_RS02535	COG0167	dihydroorotate dehydrogenase activity
At1D1609_RS02550	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D1609_RS02570	COG1959	2 iron, 2 sulfur cluster binding
At1D1609_RS02575	COG1201	RNA secondary structure unwinding
At1D1609_RS02610	COG1960	acyl-CoA dehydrogenase activity
At1D1609_RS02615	COG0183	Belongs to the thiolase family
At1D1609_RS02625	COG1250	3-hydroxyacyl-CoA dehydrogenase
At1D1609_RS02625	COG1024	Enoyl-CoA hydratase
At1D1609_RS02665	COG1320	monovalent cation:proton antiporter activity
At1D1609_RS02670	COG2212	antiporter activity
At1D1609_RS02675	COG1863	multisubunit Na H antiporter MnhE subunit
At1D1609_RS02680	COG0651	ATP synthesis coupled electron transport
At1D1609_RS02685	COG1006	Multisubunit Na H antiporter MnhC subunit
At1D1609_RS02690	COG2111	Na H antiporter
At1D1609_RS02690	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
At1D1609_RS02700	COG0840	transmembrane signaling receptor activity
At1D1609_RS02710	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS02715	COG0643	Histidine kinase
At1D1609_RS02715	COG2198	Histidine kinase
At1D1609_RS02720	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
At1D1609_RS02725	COG2201	protein-glutamate methylesterase activity
At1D1609_RS02730	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS02735	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
At1D1609_RS02745	COG1766	The M ring may be actively involved in energy transduction
At1D1609_RS02750	COG2771	luxR family
At1D1609_RS02760	COG2972	Histidine kinase
At1D1609_RS02760	COG0840	transmembrane signaling receptor activity
At1D1609_RS02765	COG2198	Histidine kinase
At1D1609_RS02765	COG0784	Response regulator, receiver
At1D1609_RS02765	COG2205	protein histidine kinase activity
At1D1609_RS02770	COG1970	mechanosensitive ion channel activity
At1D1609_RS02775	COG0436	Aminotransferase
At1D1609_RS02790	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
At1D1609_RS02795	COG0424	maF-like protein
At1D1609_RS02800	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
At1D1609_RS02810	COG5328	Belongs to the UPF0262 family
At1D1609_RS02815	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
At1D1609_RS02825	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
At1D1609_RS03005	COG0328	RNA-DNA hybrid ribonuclease activity
At1D1609_RS03020	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
At1D1609_RS03130	COG1338	Plays a role in the flagellum-specific transport system
At1D1609_RS03140	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
At1D1609_RS03150	COG1706	bacterial-type flagellum-dependent cell motility
At1D1609_RS03155	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
At1D1609_RS03160	COG4786	Flagellar basal body rod
At1D1609_RS03165	COG1677	Flagellar hook-basal body complex protein FliE
At1D1609_RS03170	COG1558	bacterial-type flagellum-dependent cell motility
At1D1609_RS03175	COG1815	bacterial-type flagellum-dependent cell motility
At1D1609_RS03185	COG1157	protein secretion by the type III secretion system
At1D1609_RS03190	COG4786	Flagellar basal body rod
At1D1609_RS03200	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
At1D1609_RS03205	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D1609_RS03210	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D1609_RS03215	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D1609_RS03220	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
At1D1609_RS03245	COG1360	Flagellar Motor Protein
At1D1609_RS03270	COG1749	Flagellar hook protein flgE
At1D1609_RS03275	COG4786	Flagellar basal body rod
At1D1609_RS03275	COG1256	bacterial-type flagellum assembly
At1D1609_RS03290	COG5443	negative regulation of bacterial-type flagellum assembly
At1D1609_RS03295	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
At1D1609_RS03305	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
At1D1609_RS03345	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
At1D1609_RS03350	COG1609	Transcriptional regulator
At1D1609_RS03355	COG1653	transport
At1D1609_RS03360	COG1175	transmembrane transport
At1D1609_RS03365	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS03370	COG0366	Alpha amylase catalytic
At1D1609_RS03375	COG3842	ATPase activity
At1D1609_RS03385	COG3609	addiction module antidote protein, CC2985 family
At1D1609_RS03400	COG0129	dihydroxy-acid dehydratase activity
At1D1609_RS03405	COG0363	glucosamine-6-phosphate deaminase activity
At1D1609_RS03410	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
At1D1609_RS03415	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS03425	COG2081	HI0933 family
At1D1609_RS03445	COG2224	Isocitrate lyase
At1D1609_RS03455	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
At1D1609_RS03460	COG3842	ATPase activity
At1D1609_RS03465	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_RS03470	COG1177	transmembrane transport
At1D1609_RS03480	COG2205	protein histidine kinase activity
At1D1609_RS03490	COG0248	Ppx GppA phosphatase
At1D1609_RS03495	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
At1D1609_RS03500	COG0477	Major facilitator Superfamily
At1D1609_RS03540	COG0521	Mo-molybdopterin cofactor biosynthetic process
At1D1609_RS03545	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
At1D1609_RS03555	COG0142	geranyltranstransferase activity
At1D1609_RS03590	COG0752	glycyl-tRNA synthetase alpha subunit
At1D1609_RS03595	COG1704	LemA family
At1D1609_RS03600	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
At1D1609_RS03610	COG0751	glycine-tRNA ligase activity
At1D1609_RS03620	COG1683	Conserved Protein
At1D1609_RS03625	COG0840	transmembrane signaling receptor activity
At1D1609_RS03635	COG0151	Belongs to the GarS family
At1D1609_RS03640	COG2183	response to ionizing radiation
At1D1609_RS03645	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D1609_RS03655	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
At1D1609_RS03670	COG0583	DNA-binding transcription factor activity
At1D1609_RS03690	COG0306	phosphate transporter
At1D1609_RS03700	COG0561	phosphatase activity
At1D1609_RS03705	COG0438	transferase activity, transferring glycosyl groups
At1D1609_RS03710	COG2186	Transcriptional regulator
At1D1609_RS03720	COG0583	DNA-binding transcription factor activity
At1D1609_RS03725	COG0277	FAD linked oxidase domain protein
At1D1609_RS03735	COG0277	FAD linked oxidase domain protein
At1D1609_RS03740	COG0247	lactate metabolic process
At1D1609_RS03755	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_RS03760	COG2818	Glycosylase
At1D1609_RS03770	COG2855	membrane
At1D1609_RS03775	COG0583	DNA-binding transcription factor activity
At1D1609_RS03805	COG0124	histidyl-tRNA synthetase
At1D1609_RS03810	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
At1D1609_RS03815	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
At1D1609_RS03820	COG2259	Doxx family
At1D1609_RS03830	COG0459	protein refolding
At1D1609_RS03835	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
At1D1609_RS03850	COG0196	riboflavin kinase activity
At1D1609_RS03855	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
At1D1609_RS03865	COG0590	tRNA wobble adenosine to inosine editing
At1D1609_RS03870	COG1187	pseudouridine synthase activity
At1D1609_RS03875	COG0742	ribosomal rna small subunit methyltransferase
At1D1609_RS03880	COG1752	Esterase of the alpha-beta hydrolase superfamily
At1D1609_RS03885	COG0475	glutathione-regulated potassium exporter activity
At1D1609_RS03885	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
At1D1609_RS03895	COG0312	modulator of DNA gyrase
At1D1609_RS03900	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_RS03910	COG1519	Transferase
At1D1609_RS03920	COG1663	tetraacyldisaccharide 4'-kinase activity
At1D1609_RS03930	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
At1D1609_RS03935	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS03940	COG3300	MHYT domain
At1D1609_RS03940	COG5001	Diguanylate cyclase
At1D1609_RS03945	COG3386	PFAM SMP-30 Gluconolaconase
At1D1609_RS03950	COG0800	Aldolase
At1D1609_RS03955	COG3734	2-keto-3-deoxy-galactonokinase
At1D1609_RS03960	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS03965	COG1414	Transcriptional regulator
At1D1609_RS03970	COG2197	response regulator
At1D1609_RS03985	COG0598	Magnesium transport protein CorA
At1D1609_RS03990	COG3158	transport of potassium into the cell
At1D1609_RS04005	COG0356	it plays a direct role in the translocation of protons across the membrane
At1D1609_RS04015	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
At1D1609_RS04020	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
At1D1609_RS04030	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
At1D1609_RS04050	COG0009	L-threonylcarbamoyladenylate synthase
At1D1609_RS04060	COG4638	Rieske (2fe-2S)
At1D1609_RS04085	COG1960	acyl-CoA dehydrogenase activity
At1D1609_RS04100	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
At1D1609_RS04110	COG0840	transmembrane signaling receptor activity
At1D1609_RS04120	COG1522	sequence-specific DNA binding
At1D1609_RS04150	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
At1D1609_RS04155	COG1741	Belongs to the pirin family
At1D1609_RS04160	COG1722	exodeoxyribonuclease VII activity
At1D1609_RS04165	COG0123	including yeast histone deacetylase and acetoin utilization protein
At1D1609_RS04170	COG1268	BioY protein
At1D1609_RS04175	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
At1D1609_RS04180	COG1122	ATPase activity
At1D1609_RS04185	COG3214	Protein conserved in bacteria
At1D1609_RS04195	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
At1D1609_RS04195	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
At1D1609_RS04200	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
At1D1609_RS04215	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
At1D1609_RS04230	COG0259	pyridoxamine-phosphate oxidase activity
At1D1609_RS04255	COG0312	modulator of DNA gyrase
At1D1609_RS04275	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
At1D1609_RS04280	COG0109	protoheme IX farnesyltransferase activity
At1D1609_RS04290	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
At1D1609_RS04305	COG3346	SURF1 family
At1D1609_RS04310	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
At1D1609_RS04315	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
At1D1609_RS04320	COG0328	RNA-DNA hybrid ribonuclease activity
At1D1609_RS04330	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
At1D1609_RS04330	COG0678	peroxiredoxin activity
At1D1609_RS04340	COG1678	Uncharacterized ACR, COG1678
At1D1609_RS04360	COG3300	MHYT domain
At1D1609_RS04360	COG5001	Diguanylate cyclase
At1D1609_RS04365	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
At1D1609_RS04370	COG0612	Peptidase, M16
At1D1609_RS04390	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D1609_RS04395	COG1802	Transcriptional regulator
At1D1609_RS04415	COG2189	Belongs to the N(4) N(6)-methyltransferase family
At1D1609_RS04430	COG1194	a g-specific adenine glycosylase
At1D1609_RS04445	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
At1D1609_RS04450	COG1196	nuclear chromosome segregation
At1D1609_RS04455	COG2514	catechol 2,3-dioxygenase activity
At1D1609_RS04460	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
At1D1609_RS04460	COG0574	Belongs to the PEP-utilizing enzyme family
At1D1609_RS04470	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
At1D1609_RS04480	COG1823	symporter activity
At1D1609_RS04505	COG0579	oxidoreductase
At1D1609_RS04530	COG2895	sulfate adenylyltransferase (ATP) activity
At1D1609_RS04535	COG0175	sulfate reduction
At1D1609_RS04540	COG0175	sulfate reduction
At1D1609_RS04545	COG1959	2 iron, 2 sulfur cluster binding
At1D1609_RS04555	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
At1D1609_RS04560	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1609_RS04565	COG4208	sulfate ABC transporter
At1D1609_RS04570	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
At1D1609_RS04600	COG2200	EAL domain
At1D1609_RS04600	COG2203	Gaf domain
At1D1609_RS04600	COG2199	diguanylate cyclase activity
At1D1609_RS04610	COG1309	transcriptional regulator
At1D1609_RS04615	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS04620	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
At1D1609_RS04665	COG0477	Major facilitator Superfamily
At1D1609_RS04675	COG1793	dna ligase
At1D1609_RS04675	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
At1D1609_RS04695	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_RS04700	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_RS04705	COG1846	Transcriptional regulator
At1D1609_RS04710	COG1764	response to oxidative stress
At1D1609_RS04725	COG0488	(ABC) transporter
At1D1609_RS04760	COG4221	oxidoreductase activity
At1D1609_RS04770	COG0433	COG0433 Predicted ATPase
At1D1609_RS04785	COG1733	regulation of RNA biosynthetic process
At1D1609_RS04790	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS04805	COG0656	L-ascorbic acid biosynthetic process
At1D1609_RS04810	COG2378	regulation of single-species biofilm formation
At1D1609_RS04820	COG4106	trans-aconitate 2-methyltransferase activity
At1D1609_RS04825	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D1609_RS04830	COG0840	transmembrane signaling receptor activity
At1D1609_RS04835	COG0583	DNA-binding transcription factor activity
At1D1609_RS04850	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
At1D1609_RS04870	COG3909	cytochrome
At1D1609_RS04875	COG2010	Cytochrome c
At1D1609_RS04905	COG0789	Transcriptional regulator
At1D1609_RS04935	COG0517	IMP dehydrogenase activity
At1D1609_RS04935	COG4175	Glycine betaine
At1D1609_RS04940	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1609_RS04975	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_RS04985	COG2169	Transcriptional regulator
At1D1609_RS04985	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D1609_RS05000	COG2514	catechol 2,3-dioxygenase activity
At1D1609_RS05020	COG1272	protein, Hemolysin III
At1D1609_RS05030	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
At1D1609_RS05035	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
At1D1609_RS05035	COG2111	Na H antiporter
At1D1609_RS05040	COG2111	Na H antiporter
At1D1609_RS05045	COG1006	Multisubunit Na H antiporter MnhC subunit
At1D1609_RS05050	COG0651	ATP synthesis coupled electron transport
At1D1609_RS05055	COG1863	multisubunit Na H antiporter MnhE subunit
At1D1609_RS05060	COG2212	antiporter activity
At1D1609_RS05065	COG1320	monovalent cation:proton antiporter activity
At1D1609_RS05070	COG4957	zinc ion binding
At1D1609_RS05085	COG2166	iron-sulfur cluster assembly
At1D1609_RS05095	COG2205	protein histidine kinase activity
At1D1609_RS05160	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D1609_RS05165	COG2983	Belongs to the UPF0260 family
At1D1609_RS05205	COG2814	Major facilitator Superfamily
At1D1609_RS05220	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
At1D1609_RS05270	COG4695	Portal protein
At1D1609_RS05385	COG4235	cytochrome complex assembly
At1D1609_RS05390	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
At1D1609_RS05395	COG1138	Cytochrome C-type biogenesis protein
At1D1609_RS05400	COG3088	subunit of a heme lyase
At1D1609_RS05405	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
At1D1609_RS05410	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS05415	COG2205	protein histidine kinase activity
At1D1609_RS05420	COG3011	Protein conserved in bacteria
At1D1609_RS05435	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
At1D1609_RS05445	COG2205	protein histidine kinase activity
At1D1609_RS05445	COG2202	Pas domain
At1D1609_RS05455	COG0308	aminopeptidase N
At1D1609_RS05460	COG0697	spore germination
At1D1609_RS05480	COG0443	Heat shock 70 kDa protein
At1D1609_RS05520	COG0604	alcohol dehydrogenase
At1D1609_RS05525	COG1733	regulation of RNA biosynthetic process
At1D1609_RS05530	COG1968	undecaprenyl-diphosphatase activity
At1D1609_RS05535	COG2239	Acts as a magnesium transporter
At1D1609_RS05540	COG2814	Major facilitator Superfamily
At1D1609_RS05570	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
At1D1609_RS05600	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
At1D1609_RS05650	COG0741	lytic transglycosylase activity
At1D1609_RS05660	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_RS05665	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
At1D1609_RS05670	COG0840	transmembrane signaling receptor activity
At1D1609_RS05680	COG1758	RNA polymerase activity
At1D1609_RS05705	COG0736	holo-[acyl-carrier-protein] synthase activity
At1D1609_RS05710	COG0681	Belongs to the peptidase S26 family
At1D1609_RS05715	COG0571	ribonuclease III activity
At1D1609_RS05720	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
At1D1609_RS05725	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
At1D1609_RS05730	COG0784	Response regulator, receiver
At1D1609_RS05735	COG1381	Involved in DNA repair and RecF pathway recombination
At1D1609_RS05745	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
At1D1609_RS05755	COG1418	mRNA catabolic process
At1D1609_RS05765	COG0346	lactoylglutathione lyase activity
At1D1609_RS05775	COG1116	anion transmembrane transporter activity
At1D1609_RS05780	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_RS05785	COG3443	Belongs to the bacterial solute-binding protein 9 family
At1D1609_RS05790	COG0668	transmembrane transport
At1D1609_RS05800	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
At1D1609_RS05830	COG1742	UPF0060 membrane protein
At1D1609_RS05845	COG1183	phosphatidylcholine synthase activity
At1D1609_RS05850	COG0688	phosphatidylethanolamine metabolic process
At1D1609_RS05855	COG5265	(ABC) transporter
At1D1609_RS05910	COG2852	Protein conserved in bacteria
At1D1609_RS05920	COG0215	cysteine-tRNA ligase activity
At1D1609_RS05925	COG4221	oxidoreductase activity
At1D1609_RS05930	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
At1D1609_RS05935	COG1286	toxin biosynthetic process
At1D1609_RS05955	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
At1D1609_RS05965	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
At1D1609_RS05975	COG0305	Participates in initiation and elongation during chromosome replication
At1D1609_RS05995	COG0359	binds to the 23S rRNA
At1D1609_RS06005	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
At1D1609_RS06010	COG0360	Binds together with S18 to 16S ribosomal RNA
At1D1609_RS06030	COG0667	Aldo Keto reductase
At1D1609_RS06035	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
At1D1609_RS06045	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1609_RS06050	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D1609_RS06060	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
At1D1609_RS06065	COG1561	YicC-like family, N-terminal region
At1D1609_RS06070	COG0194	GDP metabolic process
At1D1609_RS06080	COG0400	carboxylic ester hydrolase activity
At1D1609_RS06085	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
At1D1609_RS06090	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D1609_RS06100	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
At1D1609_RS06115	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
At1D1609_RS06135	COG4251	negative regulation of phosphorylation
At1D1609_RS06135	COG5001	Diguanylate cyclase
At1D1609_RS06135	COG2203	Gaf domain
At1D1609_RS06135	COG3706	GGDEF domain
At1D1609_RS06140	COG3300	MHYT domain
At1D1609_RS06140	COG5001	Diguanylate cyclase
At1D1609_RS06145	COG0488	(ABC) transporter
At1D1609_RS06150	COG3706	GGDEF domain
At1D1609_RS06160	COG0105	UTP biosynthetic process
At1D1609_RS06180	COG0314	molybdopterin synthase activity
At1D1609_RS06190	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
At1D1609_RS06195	COG0322	excinuclease ABC activity
At1D1609_RS06200	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS06210	COG0625	glutathione transferase activity
At1D1609_RS06225	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
At1D1609_RS06230	COG0243	molybdopterin cofactor binding
At1D1609_RS06245	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
At1D1609_RS06250	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
At1D1609_RS06260	COG0628	permease
At1D1609_RS06270	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
At1D1609_RS06275	COG0248	Ppx GppA phosphatase
At1D1609_RS06300	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
At1D1609_RS06310	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
At1D1609_RS06315	COG0477	Major facilitator Superfamily
At1D1609_RS06320	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
At1D1609_RS06330	COG0659	secondary active sulfate transmembrane transporter activity
At1D1609_RS06340	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
At1D1609_RS06350	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
At1D1609_RS06365	COG0113	porphobilinogen synthase activity
At1D1609_RS06385	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
At1D1609_RS06390	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
At1D1609_RS06395	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
At1D1609_RS06395	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
At1D1609_RS06405	COG1280	lysine exporter protein (LysE YggA)
At1D1609_RS06410	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
At1D1609_RS06415	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
At1D1609_RS06420	COG2814	Major facilitator Superfamily
At1D1609_RS06425	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
At1D1609_RS06445	COG0416	fatty acid biosynthetic process
At1D1609_RS06450	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
At1D1609_RS06455	COG0776	regulation of translation
At1D1609_RS06490	COG0789	Transcriptional regulator
At1D1609_RS06495	COG0601	transmembrane transport
At1D1609_RS06500	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS06505	COG0444	Belongs to the ABC transporter superfamily
At1D1609_RS06525	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
At1D1609_RS06530	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
At1D1609_RS06545	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
At1D1609_RS06550	COG0583	DNA-binding transcription factor activity
At1D1609_RS06560	COG0737	Belongs to the 5'-nucleotidase family
At1D1609_RS06585	COG2897	thiosulfate sulfurtransferase activity
At1D1609_RS06600	COG0415	Belongs to the DNA photolyase family
At1D1609_RS06610	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D1609_RS06640	COG3932	Exopolysaccharide synthesis, ExoD
At1D1609_RS06645	COG1238	metal cluster binding
At1D1609_RS06660	COG4139	cobalamin transport
At1D1609_RS06665	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
At1D1609_RS06675	COG1528	Iron-storage protein
At1D1609_RS06745	COG1612	heme a metabolic process
At1D1609_RS06755	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
At1D1609_RS06760	COG0010	Belongs to the arginase family
At1D1609_RS06765	COG1396	sequence-specific DNA binding
At1D1609_RS06770	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
At1D1609_RS06775	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
At1D1609_RS06780	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
At1D1609_RS06800	COG1832	CoA-binding protein
At1D1609_RS06825	COG3706	GGDEF domain
At1D1609_RS06830	COG0740	serine-type endopeptidase activity
At1D1609_RS06835	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
At1D1609_RS06845	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
At1D1609_RS06855	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D1609_RS06875	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1609_RS06880	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1609_RS06885	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1609_RS06895	COG0649	NAD binding
At1D1609_RS06905	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
At1D1609_RS06910	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
At1D1609_RS06920	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
At1D1609_RS06925	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D1609_RS06935	COG0713	ATP synthesis coupled electron transport
At1D1609_RS06950	COG1007	ATP synthesis coupled electron transport
At1D1609_RS06970	COG0442	prolyl-tRNA aminoacylation
At1D1609_RS06980	COG1136	(ABC) transporter
At1D1609_RS07000	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
At1D1609_RS07010	COG0784	Response regulator, receiver
At1D1609_RS07025	COG0267	Belongs to the bacterial ribosomal protein bL33 family
At1D1609_RS07030	COG0477	Major facilitator Superfamily
At1D1609_RS07045	COG0557	exoribonuclease II activity
At1D1609_RS07050	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
At1D1609_RS07060	COG0758	DNA mediated transformation
At1D1609_RS07065	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
At1D1609_RS07075	COG0540	Belongs to the ATCase OTCase family
At1D1609_RS07085	COG1960	acyl-CoA dehydrogenase activity
At1D1609_RS07090	COG0456	acetyltransferase
At1D1609_RS07115	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
At1D1609_RS07120	COG2824	Alkylphosphonate utilization operon protein PhnA
At1D1609_RS07125	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
At1D1609_RS07130	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
At1D1609_RS07135	COG0154	amidase activity
At1D1609_RS07140	COG3811	Belongs to the UPF0386 family
At1D1609_RS07155	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
At1D1609_RS07165	COG0456	acetyltransferase
At1D1609_RS07185	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
At1D1609_RS07190	COG0439	Biotin carboxylase
At1D1609_RS07195	COG0511	ligase activity, forming carbon-carbon bonds
At1D1609_RS07200	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
At1D1609_RS07210	COG0436	Aminotransferase
At1D1609_RS07230	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS07235	COG1530	ribonuclease E activity
At1D1609_RS07250	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D1609_RS07270	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
At1D1609_RS07275	COG0384	phenazine biosynthesis protein PhzF
At1D1609_RS07290	COG0633	Ferredoxin
At1D1609_RS07300	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
At1D1609_RS07305	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
At1D1609_RS07310	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
At1D1609_RS07320	COG3768	UPF0283 membrane protein
At1D1609_RS07325	COG3106	COG3106 Predicted ATPase
At1D1609_RS07355	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
At1D1609_RS07385	COG0537	adenosine 5'-monophosphoramidase activity
At1D1609_RS07410	COG0052	Belongs to the universal ribosomal protein uS2 family
At1D1609_RS07415	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
At1D1609_RS07420	COG0528	UMP kinase activity
At1D1609_RS07425	COG0233	cytoplasmic translational termination
At1D1609_RS07430	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
At1D1609_RS07440	COG0750	zinc metalloprotease
At1D1609_RS07445	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
At1D1609_RS07450	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D1609_RS07455	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D1609_RS07460	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D1609_RS07465	COG3494	Protein of unknown function (DUF1009)
At1D1609_RS07470	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D1609_RS07475	COG2186	Transcriptional regulator
At1D1609_RS07485	COG0765	amino acid transport
At1D1609_RS07490	COG0765	amino acid transport
At1D1609_RS07500	COG0372	Belongs to the citrate synthase family
At1D1609_RS07515	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
At1D1609_RS07520	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_RS07525	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS07530	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS07535	COG3958	Transketolase
At1D1609_RS07540	COG3959	Transketolase, thiamine diphosphate binding domain
At1D1609_RS07545	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS07550	COG0583	DNA-binding transcription factor activity
At1D1609_RS07560	COG2376	Dihydroxyacetone kinase
At1D1609_RS07580	COG2877	3-deoxy-8-phosphooctulonate synthase activity
At1D1609_RS07585	COG0148	phosphopyruvate hydratase activity
At1D1609_RS07595	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
At1D1609_RS07600	COG0022	dehydrogenase e1 component
At1D1609_RS07600	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D1609_RS07605	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D1609_RS07615	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
At1D1609_RS07625	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
At1D1609_RS07630	COG3385	transposase activity
At1D1609_RS07635	COG0697	spore germination
At1D1609_RS07655	COG2867	negative regulation of translational initiation
At1D1609_RS07660	COG1546	Belongs to the CinA family
At1D1609_RS07665	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
At1D1609_RS07665	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
At1D1609_RS07675	COG3852	Histidine kinase
At1D1609_RS07680	COG2204	response regulator
At1D1609_RS07685	COG5000	phosphorelay sensor kinase activity
At1D1609_RS07690	COG2204	response regulator
At1D1609_RS07695	COG0569	domain protein
At1D1609_RS07700	COG1923	regulation of RNA biosynthetic process
At1D1609_RS07705	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
At1D1609_RS07710	COG3956	TIGRFAM MazG family protein
At1D1609_RS07725	COG1648	precorrin-2 dehydrogenase activity
At1D1609_RS07725	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
At1D1609_RS07765	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
At1D1609_RS07770	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
At1D1609_RS07770	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
At1D1609_RS07775	COG0509	glycine decarboxylation via glycine cleavage system
At1D1609_RS07780	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1609_RS07805	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
At1D1609_RS07830	COG0251	oxidation-reduction process
At1D1609_RS07835	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
At1D1609_RS07845	COG1671	Belongs to the UPF0178 family
At1D1609_RS07855	COG0450	alkyl hydroperoxide reductase
At1D1609_RS07875	COG0431	NADPH-dependent FMN reductase
At1D1609_RS07885	COG0798	PFAM Bile acid sodium symporter
At1D1609_RS07915	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
At1D1609_RS07915	COG0321	lipoyl(octanoyl) transferase activity
At1D1609_RS07920	COG0084	hydrolase, TatD family'
At1D1609_RS07925	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D1609_RS07935	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
At1D1609_RS07980	COG1802	Transcriptional regulator
At1D1609_RS07980	COG4626	Terminase
At1D1609_RS08060	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
At1D1609_RS08065	COG2095	MarC family integral membrane protein
At1D1609_RS08070	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
At1D1609_RS08070	COG0617	tRNA 3'-terminal CCA addition
At1D1609_RS08070	COG0517	IMP dehydrogenase activity
At1D1609_RS08075	COG3668	Plasmid stabilization system
At1D1609_RS08080	COG3609	addiction module antidote protein, CC2985 family
At1D1609_RS08085	COG0629	single-stranded DNA binding
At1D1609_RS08090	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
At1D1609_RS08100	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
At1D1609_RS08120	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D1609_RS08125	COG1121	(ABC) transporter
At1D1609_RS08145	COG0667	Aldo Keto reductase
At1D1609_RS08155	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
At1D1609_RS08190	COG3385	transposase activity
At1D1609_RS08240	COG2239	Acts as a magnesium transporter
At1D1609_RS08245	COG0243	molybdopterin cofactor binding
At1D1609_RS08255	COG0242	peptide deformylase activity
At1D1609_RS08270	COG2205	protein histidine kinase activity
At1D1609_RS08270	COG2202	Pas domain
At1D1609_RS08285	COG0321	lipoyl(octanoyl) transferase activity
At1D1609_RS08290	COG1064	alcohol dehydrogenase
At1D1609_RS08320	COG1862	Preprotein translocase
At1D1609_RS08335	COG1309	transcriptional regulator
At1D1609_RS08340	COG2124	cytochrome p450
At1D1609_RS08355	COG0596	Alpha beta hydrolase
At1D1609_RS08365	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_RS08370	COG0626	cystathionine gamma-synthase activity
At1D1609_RS08375	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_RS08380	COG4597	amino acid ABC transporter
At1D1609_RS08385	COG0765	amino acid transport
At1D1609_RS08390	COG1126	abc transporter atp-binding protein
At1D1609_RS08410	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
At1D1609_RS08425	COG0436	Aminotransferase
At1D1609_RS08455	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D1609_RS08465	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D1609_RS08470	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1609_RS08475	COG0635	Involved in the biosynthesis of porphyrin-containing compound
At1D1609_RS08490	COG3243	poly(R)-hydroxyalkanoic acid synthase
At1D1609_RS08495	COG1489	DNA binding
At1D1609_RS08500	COG0024	Methionine aminopeptidase
At1D1609_RS08505	COG2003	Belongs to the UPF0758 family
At1D1609_RS08520	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
At1D1609_RS08535	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
At1D1609_RS08540	COG0546	phosphoglycolate phosphatase activity
At1D1609_RS08550	COG0114	fumarate hydratase activity
At1D1609_RS08555	COG0504	CTP synthase activity
At1D1609_RS08565	COG0149	triose-phosphate isomerase activity
At1D1609_RS08575	COG0187	DNA topoisomerase II activity
At1D1609_RS08600	COG3210	domain, Protein
At1D1609_RS08600	COG4223	transferase activity, transferring acyl groups other than amino-acyl groups
At1D1609_RS08600	COG3064	Membrane
At1D1609_RS08640	COG0740	serine-type endopeptidase activity
At1D1609_RS08650	COG0640	Transcriptional regulator
At1D1609_RS08655	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
At1D1609_RS08660	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS08670	COG3264	Mechanosensitive ion channel
At1D1609_RS08670	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
At1D1609_RS08740	COG1127	ABC transporter
At1D1609_RS08745	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
At1D1609_RS08750	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1609_RS08760	COG0280	phosphate acetyltransferase
At1D1609_RS08760	COG0281	malic enzyme
At1D1609_RS08775	COG0778	Nitroreductase
At1D1609_RS08780	COG0823	Involved in the tonB-independent uptake of proteins
At1D1609_RS08795	COG1368	sulfuric ester hydrolase activity
At1D1609_RS08825	COG0544	peptidyl-prolyl cis-trans isomerase activity
At1D1609_RS08855	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
At1D1609_RS08875	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
At1D1609_RS08890	COG0318	PFAM AMP-dependent synthetase and ligase
At1D1609_RS08905	COG0343	queuine tRNA-ribosyltransferase activity
At1D1609_RS08910	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
At1D1609_RS08925	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
At1D1609_RS08950	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
At1D1609_RS08955	COG0134	indole-3-glycerol-phosphate synthase activity
At1D1609_RS08960	COG0315	cyclic pyranopterin monophosphate synthase activity
At1D1609_RS08965	COG0303	'Molybdopterin
At1D1609_RS08970	COG3706	GGDEF domain
At1D1609_RS08980	COG0475	glutathione-regulated potassium exporter activity
At1D1609_RS08980	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
At1D1609_RS08990	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
At1D1609_RS08995	COG0697	spore germination
At1D1609_RS09000	COG2814	Major facilitator Superfamily
At1D1609_RS09005	COG0746	molybdenum cofactor guanylyltransferase activity
At1D1609_RS09010	COG1763	Mo-molybdopterin cofactor biosynthetic process
At1D1609_RS09015	COG0739	heme binding
At1D1609_RS09020	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
At1D1609_RS09025	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
At1D1609_RS09030	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
At1D1609_RS09035	COG0805	protein transport
At1D1609_RS09040	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
At1D1609_RS09045	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
At1D1609_RS09050	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
At1D1609_RS09055	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
At1D1609_RS09060	COG1472	Belongs to the glycosyl hydrolase 3 family
At1D1609_RS09070	COG0018	arginyl-trna synthetase
At1D1609_RS09075	COG0232	Belongs to the dGTPase family. Type 2 subfamily
At1D1609_RS09105	COG0525	valine-tRNA ligase activity
At1D1609_RS09115	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
At1D1609_RS09150	COG2264	protein methyltransferase activity
At1D1609_RS09285	COG3567	Phage-associated protein, HI1409 family
At1D1609_RS09325	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
At1D1609_RS09345	COG0270	DNA (cytosine-5-)-methyltransferase activity
At1D1609_RS09535	COG0655	NAD(P)H dehydrogenase (quinone) activity
At1D1609_RS09540	COG1546	Belongs to the CinA family
At1D1609_RS09540	COG1058	Belongs to the CinA family
At1D1609_RS09545	COG0589	response to stress
At1D1609_RS09550	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
At1D1609_RS09560	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
At1D1609_RS09605	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
At1D1609_RS09625	COG1914	H( )-stimulated, divalent metal cation uptake system
At1D1609_RS09635	COG1132	(ABC) transporter
At1D1609_RS09640	COG0628	permease
At1D1609_RS09645	COG3385	transposase activity
At1D1609_RS09680	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
At1D1609_RS09690	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
At1D1609_RS09700	COG0302	gtp cyclohydrolase
At1D1609_RS09705	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
At1D1609_RS09710	COG1752	Esterase of the alpha-beta hydrolase superfamily
At1D1609_RS09715	COG0517	IMP dehydrogenase activity
At1D1609_RS09715	COG0516	GMP reductase activity
At1D1609_RS09745	COG1760	l-serine dehydratase
At1D1609_RS09780	COG0583	DNA-binding transcription factor activity
At1D1609_RS09795	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
At1D1609_RS09795	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
At1D1609_RS09800	COG0347	Belongs to the P(II) protein family
At1D1609_RS09805	COG0174	glutamine synthetase
At1D1609_RS09835	COG0697	spore germination
At1D1609_RS09840	COG0300	oxidoreductase activity
At1D1609_RS09855	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
At1D1609_RS09865	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
At1D1609_RS09875	COG3668	Plasmid stabilization system
At1D1609_RS09880	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
At1D1609_RS09895	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
At1D1609_RS09900	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
At1D1609_RS09905	COG2186	Transcriptional regulator
At1D1609_RS09915	COG1079	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS09920	COG4603	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS09925	COG3845	ABC transporter
At1D1609_RS09930	COG1183	phosphatidylcholine synthase activity
At1D1609_RS09935	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_RS09940	COG0679	Auxin Efflux Carrier
At1D1609_RS09945	COG0785	Cytochrome C biogenesis protein
At1D1609_RS09965	COG0346	lactoylglutathione lyase activity
At1D1609_RS09970	COG1278	Cold shock
At1D1609_RS10135	COG1136	(ABC) transporter
At1D1609_RS10135	COG0577	efflux transmembrane transporter activity
At1D1609_RS10140	COG0577	efflux transmembrane transporter activity
At1D1609_RS10140	COG1136	(ABC) transporter
At1D1609_RS10165	COG2151	metal-sulfur cluster biosynthetic enzyme
At1D1609_RS10170	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
At1D1609_RS10175	COG0719	Fe-S assembly protein
At1D1609_RS10180	COG0396	ATPase activity
At1D1609_RS10190	COG0719	Fe-S assembly protein
At1D1609_RS10195	COG1104	cysteine desulfurase activity
At1D1609_RS10200	COG2945	thiolester hydrolase activity
At1D1609_RS10210	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
At1D1609_RS10215	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
At1D1609_RS10225	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
At1D1609_RS10230	COG2833	Protein of unknown function (DUF455)
At1D1609_RS10235	COG0739	heme binding
At1D1609_RS10240	COG0513	Belongs to the DEAD box helicase family
At1D1609_RS10270	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
At1D1609_RS10280	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
At1D1609_RS10285	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
At1D1609_RS10290	COG0047	phosphoribosylformylglycinamidine synthase activity
At1D1609_RS10305	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1609_RS10315	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
At1D1609_RS10340	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
At1D1609_RS10345	COG2814	Major facilitator Superfamily
At1D1609_RS10350	COG3385	transposase activity
At1D1609_RS10355	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_RS10360	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_RS10365	COG0037	tRNA processing
At1D1609_RS10370	COG2066	Belongs to the glutaminase family
At1D1609_RS10375	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
At1D1609_RS10380	COG0861	Integral membrane protein TerC family
At1D1609_RS10395	COG1280	lysine exporter protein (LysE YggA)
At1D1609_RS10400	COG3093	addiction module antidote protein HigA
At1D1609_RS10420	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
At1D1609_RS10425	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
At1D1609_RS10435	COG0538	isocitrate dehydrogenase activity
At1D1609_RS10445	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
At1D1609_RS10450	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
At1D1609_RS10455	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_RS10460	COG2313	pseudouridylate synthase activity
At1D1609_RS10475	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_RS10480	COG4215	(ABC) transporter
At1D1609_RS10490	COG5425	PFAM Usg family protein
At1D1609_RS10500	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1609_RS10505	COG1522	sequence-specific DNA binding
At1D1609_RS10510	COG1573	uracil-dna glycosylase
At1D1609_RS10520	COG2202	Pas domain
At1D1609_RS10520	COG2205	protein histidine kinase activity
At1D1609_RS10530	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
At1D1609_RS10535	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
At1D1609_RS10555	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
At1D1609_RS10560	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS10565	COG1129	ABC transporter
At1D1609_RS10575	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS10585	COG3959	Transketolase, thiamine diphosphate binding domain
At1D1609_RS10590	COG3958	Transketolase
At1D1609_RS10595	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D1609_RS10600	COG2390	Transcriptional regulator
At1D1609_RS10615	COG0842	Transport permease protein
At1D1609_RS10620	COG1131	(ABC) transporter
At1D1609_RS10625	COG0730	response to heat
At1D1609_RS10625	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
At1D1609_RS10650	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
At1D1609_RS10655	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
At1D1609_RS10685	COG0129	dihydroxy-acid dehydratase activity
At1D1609_RS10690	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
At1D1609_RS10695	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
At1D1609_RS10705	COG3739	integral membrane protein
At1D1609_RS10715	COG0203	ribosomal protein L17
At1D1609_RS10720	COG0202	RNA polymerase activity
At1D1609_RS10725	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
At1D1609_RS10730	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
At1D1609_RS10735	COG0563	adenylate kinase activity
At1D1609_RS10740	COG0201	protein transport
At1D1609_RS10745	COG0200	Binds to the 23S rRNA
At1D1609_RS10750	COG1841	ribosomal large subunit assembly
At1D1609_RS10755	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
At1D1609_RS10760	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
At1D1609_RS10765	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
At1D1609_RS10770	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
At1D1609_RS10775	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
At1D1609_RS10780	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
At1D1609_RS10785	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
At1D1609_RS10790	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
At1D1609_RS10795	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
At1D1609_RS10800	COG0255	Belongs to the universal ribosomal protein uL29 family
At1D1609_RS10805	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
At1D1609_RS10810	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
At1D1609_RS10815	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
At1D1609_RS10820	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
At1D1609_RS10825	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
At1D1609_RS10830	COG0089	rRNA binding
At1D1609_RS10835	COG0088	Forms part of the polypeptide exit tunnel
At1D1609_RS10840	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
At1D1609_RS10845	COG0051	transcription antitermination factor activity, RNA binding
At1D1609_RS10850	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
At1D1609_RS10855	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
At1D1609_RS10860	COG0049	tRNA binding
At1D1609_RS10865	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
At1D1609_RS10885	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
At1D1609_RS10890	COG0085	RNA polymerase activity
At1D1609_RS10895	COG0222	ribosome binding
At1D1609_RS10900	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
At1D1609_RS10905	COG0081	regulation of translation
At1D1609_RS10910	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
At1D1609_RS10920	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
At1D1609_RS10935	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
At1D1609_RS10940	COG0861	Integral membrane protein TerC family
At1D1609_RS10955	COG3895	Periplasmic Protein
At1D1609_RS10995	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_RS10995	COG2205	protein histidine kinase activity
At1D1609_RS10995	COG2198	Histidine kinase
At1D1609_RS10995	COG0784	Response regulator, receiver
At1D1609_RS11000	COG0784	Response regulator, receiver
At1D1609_RS11005	COG2202	Pas domain
At1D1609_RS11005	COG3920	Histidine kinase
At1D1609_RS11010	COG0784	Response regulator, receiver
At1D1609_RS11015	COG4251	negative regulation of phosphorylation
At1D1609_RS11030	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
At1D1609_RS11035	COG1607	acyl-coa hydrolase
At1D1609_RS11055	COG2910	NAD(P)H-binding
At1D1609_RS11060	COG1733	regulation of RNA biosynthetic process
At1D1609_RS11065	COG0454	-acetyltransferase
At1D1609_RS11065	COG0456	acetyltransferase
At1D1609_RS11075	COG0556	nucleotide-excision repair
At1D1609_RS11085	COG2382	esterase
At1D1609_RS11105	COG0484	heat shock protein binding
At1D1609_RS11135	COG3842	ATPase activity
At1D1609_RS11140	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1609_RS11145	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1609_RS11155	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1609_RS11170	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
At1D1609_RS11185	COG2207	Transcriptional regulator
At1D1609_RS11190	COG1064	alcohol dehydrogenase
At1D1609_RS11195	COG1252	NADH dehydrogenase
At1D1609_RS11200	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
At1D1609_RS11210	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1609_RS11215	COG1090	epimerase
At1D1609_RS11255	COG0656	L-ascorbic acid biosynthetic process
At1D1609_RS11270	COG0440	acetolactate synthase activity
At1D1609_RS11275	COG0028	Belongs to the TPP enzyme family
At1D1609_RS11285	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
At1D1609_RS11290	COG0560	Phosphoserine phosphatase
At1D1609_RS11290	COG3830	Belongs to the UPF0237 family
At1D1609_RS11300	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS11310	COG0330	HflC and HflK could
At1D1609_RS11315	COG0330	HflC and HflK could
At1D1609_RS11325	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
At1D1609_RS11360	COG0277	FAD linked oxidase domain protein
At1D1609_RS11365	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D1609_RS11410	COG1335	isochorismatase
At1D1609_RS11440	COG2264	protein methyltransferase activity
At1D1609_RS11455	COG0835	chemotaxis
At1D1609_RS11465	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
At1D1609_RS11470	COG0583	DNA-binding transcription factor activity
At1D1609_RS11480	COG1247	-acetyltransferase
At1D1609_RS11490	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
At1D1609_RS11495	COG0497	DNA recombination
At1D1609_RS11500	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
At1D1609_RS11510	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D1609_RS11515	COG0849	cell division
At1D1609_RS11520	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
At1D1609_RS11525	COG1181	Belongs to the D-alanine--D-alanine ligase family
At1D1609_RS11530	COG0477	Major facilitator Superfamily
At1D1609_RS11540	COG0812	UDP-N-acetylmuramate dehydrogenase activity
At1D1609_RS11545	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
At1D1609_RS11550	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
At1D1609_RS11560	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
At1D1609_RS11565	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
At1D1609_RS11575	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
At1D1609_RS11590	COG0275	rRNA processing
At1D1609_RS11595	COG2001	Belongs to the MraZ family
At1D1609_RS11630	COG3023	N-Acetylmuramoyl-L-alanine amidase
At1D1609_RS11635	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
At1D1609_RS11660	COG4106	trans-aconitate 2-methyltransferase activity
At1D1609_RS11680	COG2226	methyltransferase
At1D1609_RS11690	COG2267	carboxylic ester hydrolase activity
At1D1609_RS11695	COG1804	L-carnitine dehydratase bile acid-inducible protein F
At1D1609_RS11725	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_RS11730	COG2814	Major facilitator Superfamily
At1D1609_RS11750	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS11755	COG0174	glutamine synthetase
At1D1609_RS11760	COG0531	amino acid
At1D1609_RS11770	COG1737	Transcriptional regulator
At1D1609_RS11795	COG3842	ATPase activity
At1D1609_RS11810	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
At1D1609_RS11855	COG2968	Membrane
At1D1609_RS11865	COG0432	Pfam Uncharacterised protein family UPF0047
At1D1609_RS11880	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
At1D1609_RS11885	COG0358	DNA primase activity
At1D1609_RS11895	COG0505	Belongs to the CarA family
At1D1609_RS11900	COG0534	Mate efflux family protein
At1D1609_RS11920	COG2321	neutral zinc metallopeptidase
At1D1609_RS11935	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
At1D1609_RS11945	COG3706	GGDEF domain
At1D1609_RS11960	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
At1D1609_RS11970	COG1522	sequence-specific DNA binding
At1D1609_RS11975	COG0492	ferredoxin-NADP+ reductase activity
At1D1609_RS11980	COG0583	DNA-binding transcription factor activity
At1D1609_RS11990	COG1902	pentaerythritol trinitrate reductase activity
At1D1609_RS12020	COG0387	Pfam Sodium calcium exchanger
At1D1609_RS12025	COG0436	Aminotransferase
At1D1609_RS12030	COG2199	diguanylate cyclase activity
At1D1609_RS12030	COG2200	EAL domain
At1D1609_RS12045	COG1278	Cold shock
At1D1609_RS12050	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D1609_RS12065	COG1846	Transcriptional regulator
At1D1609_RS12070	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS12080	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D1609_RS12105	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
At1D1609_RS12115	COG1496	oxidoreductase activity
At1D1609_RS12120	COG0006	proline dipeptidase activity
At1D1609_RS12130	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
At1D1609_RS12155	COG0840	transmembrane signaling receptor activity
At1D1609_RS12160	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS12165	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
At1D1609_RS12170	COG5001	Diguanylate cyclase
At1D1609_RS12170	COG3300	MHYT domain
At1D1609_RS12175	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
At1D1609_RS12180	COG5001	Diguanylate cyclase
At1D1609_RS12190	COG0193	aminoacyl-tRNA hydrolase activity
At1D1609_RS12200	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
At1D1609_RS12220	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
At1D1609_RS12230	COG2857	Cytochrome c1
At1D1609_RS12230	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
At1D1609_RS12250	COG1132	(ABC) transporter
At1D1609_RS12255	COG1132	(ABC) transporter
At1D1609_RS12260	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
At1D1609_RS12275	COG0408	coproporphyrinogen oxidase activity
At1D1609_RS12290	COG0617	tRNA 3'-terminal CCA addition
At1D1609_RS12305	COG0714	Associated with various cellular activities
At1D1609_RS12325	COG0454	-acetyltransferase
At1D1609_RS12340	COG0477	Major facilitator Superfamily
At1D1609_RS12350	COG0435	Glutathione S-transferase
At1D1609_RS12355	COG0494	nUDIX hydrolase
At1D1609_RS12365	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
At1D1609_RS12380	COG3135	benzoate transporter
At1D1609_RS12390	COG4944	Protein of unknown function (DUF1109)
At1D1609_RS12405	COG0740	serine-type endopeptidase activity
At1D1609_RS12420	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
At1D1609_RS12425	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
At1D1609_RS12455	COG4175	Glycine betaine
At1D1609_RS12470	COG1435	thymidine kinase activity
At1D1609_RS12490	COG2862	Uncharacterized protein family, UPF0114
At1D1609_RS12495	COG1629	transport
At1D1609_RS12495	COG4771	TonB-dependent receptor
At1D1609_RS12505	COG0512	Glutamine amidotransferase of anthranilate synthase
At1D1609_RS12505	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
At1D1609_RS12520	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
At1D1609_RS12535	COG0366	Alpha amylase catalytic
At1D1609_RS12540	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_RS12560	COG1160	GTP binding
At1D1609_RS12580	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
At1D1609_RS12590	COG0024	Methionine aminopeptidase
At1D1609_RS12605	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS12620	COG1529	Aldehyde oxidase and xanthine dehydrogenase
At1D1609_RS12630	COG0583	DNA-binding transcription factor activity
At1D1609_RS12645	COG0402	S-adenosylhomocysteine deaminase activity
At1D1609_RS12655	COG1304	FMN binding
At1D1609_RS12665	COG1309	transcriptional regulator
At1D1609_RS12670	COG1686	Belongs to the peptidase S11 family
At1D1609_RS12680	COG2351	hydroxyisourate hydrolase activity
At1D1609_RS12685	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
At1D1609_RS12710	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D1609_RS12720	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS12720	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
At1D1609_RS12725	COG0784	Response regulator, receiver
At1D1609_RS12725	COG2205	protein histidine kinase activity
At1D1609_RS12725	COG5002	protein histidine kinase activity
At1D1609_RS12730	COG0513	Belongs to the DEAD box helicase family
At1D1609_RS12740	COG2259	Doxx family
At1D1609_RS12745	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_RS12755	COG2308	Evidence 4 Homologs of previously reported genes of
At1D1609_RS12765	COG1305	Transglutaminase-like
At1D1609_RS12770	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D1609_RS12795	COG4214	carbohydrate transport
At1D1609_RS12805	COG4213	ABC transporter substrate-binding protein
At1D1609_RS12845	COG0840	transmembrane signaling receptor activity
At1D1609_RS12895	COG1215	transferase activity, transferring glycosyl groups
At1D1609_RS12930	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
At1D1609_RS12935	COG2346	COG2346, Truncated hemoglobins
At1D1609_RS12955	COG1309	transcriptional regulator
At1D1609_RS12970	COG0494	nUDIX hydrolase
At1D1609_RS12985	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_RS12990	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_RS13020	COG1234	tRNA 3'-trailer cleavage
At1D1609_RS13025	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
At1D1609_RS13030	COG0830	nickel cation binding
At1D1609_RS13035	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
At1D1609_RS13055	COG0804	urea catabolic process
At1D1609_RS13060	COG1442	glycosyl transferase family 8
At1D1609_RS13065	COG3755	Protein conserved in bacteria
At1D1609_RS13075	COG0832	Belongs to the urease beta subunit family
At1D1609_RS13080	COG3813	Protein conserved in bacteria
At1D1609_RS13085	COG0831	urea catabolic process
At1D1609_RS13090	COG0829	nickel cation binding
At1D1609_RS13120	COG0559	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS13140	COG0174	glutamine synthetase
At1D1609_RS13145	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS13150	COG5002	protein histidine kinase activity
At1D1609_RS13150	COG0784	Response regulator, receiver
At1D1609_RS13150	COG2198	Histidine kinase
At1D1609_RS13200	COG1218	3'(2'),5'-bisphosphate nucleotidase
At1D1609_RS13280	COG0564	pseudouridine synthase activity
At1D1609_RS13290	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
At1D1609_RS13300	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
At1D1609_RS13340	COG0346	lactoylglutathione lyase activity
At1D1609_RS13350	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
At1D1609_RS13360	COG2832	Protein of unknown function (DUF454)
At1D1609_RS13365	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
At1D1609_RS13370	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS13375	COG4558	Periplasmic binding protein
At1D1609_RS13385	COG3721	Heme iron utilization protein
At1D1609_RS13400	COG3657	addiction module killer protein
At1D1609_RS13410	COG2205	protein histidine kinase activity
At1D1609_RS13450	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS13455	COG4605	iron ion homeostasis
At1D1609_RS13460	COG4604	ABC transporter, ATP-binding protein
At1D1609_RS13465	COG0783	Belongs to the Dps family
At1D1609_RS13480	COG0656	L-ascorbic acid biosynthetic process
At1D1609_RS13485	COG2814	Major facilitator Superfamily
At1D1609_RS13495	COG0583	DNA-binding transcription factor activity
At1D1609_RS13500	COG0657	acetylesterase activity
At1D1609_RS13505	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_RS13525	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
At1D1609_RS13530	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
At1D1609_RS13535	COG0288	reversible hydration of carbon dioxide
At1D1609_RS13545	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
At1D1609_RS13565	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
At1D1609_RS13570	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1609_RS13575	COG0778	Nitroreductase
At1D1609_RS13580	COG2267	carboxylic ester hydrolase activity
At1D1609_RS13585	COG0251	oxidation-reduction process
At1D1609_RS13590	COG1335	isochorismatase
At1D1609_RS13595	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS13605	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_RS13620	COG1175	transmembrane transport
At1D1609_RS13625	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS13630	COG3842	ATPase activity
At1D1609_RS13635	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_RS13645	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D1609_RS13665	COG4608	Belongs to the ABC transporter superfamily
At1D1609_RS13670	COG0444	Belongs to the ABC transporter superfamily
At1D1609_RS13675	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS13680	COG0601	transmembrane transport
At1D1609_RS13685	COG4166	transmembrane transport
At1D1609_RS13700	COG0392	lysyltransferase activity
At1D1609_RS13700	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
At1D1609_RS13730	COG1454	alcohol dehydrogenase
At1D1609_RS13735	COG2159	amidohydrolase
At1D1609_RS13740	COG1960	acyl-CoA dehydrogenase activity
At1D1609_RS13765	COG1902	pentaerythritol trinitrate reductase activity
At1D1609_RS13765	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1609_RS13770	COG3842	ATPase activity
At1D1609_RS13780	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1609_RS13785	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D1609_RS13790	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS13800	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
At1D1609_RS13805	COG0583	DNA-binding transcription factor activity
At1D1609_RS13810	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_RS13815	COG0642	Histidine kinase
At1D1609_RS13830	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
At1D1609_RS13830	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
At1D1609_RS13835	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D1609_RS13855	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D1609_RS13885	COG1454	alcohol dehydrogenase
At1D1609_RS13890	COG1609	Transcriptional regulator
At1D1609_RS13905	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS13910	COG1735	metal-dependent hydrolase with the TIM-barrel fold
At1D1609_RS13935	COG1804	L-carnitine dehydratase bile acid-inducible protein F
At1D1609_RS13945	COG0583	DNA-binding transcription factor activity
At1D1609_RS13995	COG1573	uracil-dna glycosylase
At1D1609_RS14065	COG3685	Protein conserved in bacteria
At1D1609_RS14070	COG0753	catalase activity
At1D1609_RS14100	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS14105	COG0625	glutathione transferase activity
At1D1609_RS14115	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_RS14125	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D1609_RS14130	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D1609_RS14145	COG0534	Mate efflux family protein
At1D1609_RS14195	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
At1D1609_RS14205	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_RS14210	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D1609_RS14220	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
At1D1609_RS14225	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
At1D1609_RS14230	COG1509	lysine 2,3-aminomutase activity
At1D1609_RS14250	COG0583	DNA-binding transcription factor activity
At1D1609_RS14255	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS14260	COG0725	ABC transporter, periplasmic molybdate-binding protein
At1D1609_RS14265	COG4149	molybdate abc transporter
At1D1609_RS14270	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
At1D1609_RS14285	COG2022	thiamine diphosphate biosynthetic process
At1D1609_RS14300	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
At1D1609_RS14305	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1609_RS14315	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
At1D1609_RS14340	COG1132	(ABC) transporter
At1D1609_RS14345	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
At1D1609_RS14390	COG4166	transmembrane transport
At1D1609_RS14395	COG0601	transmembrane transport
At1D1609_RS14400	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS14410	COG0438	transferase activity, transferring glycosyl groups
At1D1609_RS14415	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
At1D1609_RS14420	COG3142	Participates in the control of copper homeostasis
At1D1609_RS14425	COG2814	Major facilitator Superfamily
At1D1609_RS14440	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS14445	COG1737	Transcriptional regulator
At1D1609_RS14455	COG3842	ATPase activity
At1D1609_RS14465	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS14485	COG2188	Transcriptional regulator
At1D1609_RS14490	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
At1D1609_RS14495	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
At1D1609_RS14500	COG1940	carbohydrate kinase activity
At1D1609_RS14505	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_RS14510	COG0671	phosphoesterase, PA-phosphatase related
At1D1609_RS14515	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
At1D1609_RS14520	COG0156	8-amino-7-oxononanoate synthase activity
At1D1609_RS14530	COG0729	surface antigen
At1D1609_RS14540	COG0835	chemotaxis
At1D1609_RS14550	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
At1D1609_RS14555	COG0355	proton-transporting ATP synthase activity, rotational mechanism
At1D1609_RS14560	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
At1D1609_RS14565	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
At1D1609_RS14570	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
At1D1609_RS14575	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
At1D1609_RS14590	COG4974	Belongs to the 'phage' integrase family
At1D1609_RS14615	COG1280	lysine exporter protein (LysE YggA)
At1D1609_RS14625	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D1609_RS14630	COG0567	Dehydrogenase, E1 component
At1D1609_RS14635	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
At1D1609_RS14640	COG0045	succinate-CoA ligase (ADP-forming) activity
At1D1609_RS14645	COG0039	L-malate dehydrogenase activity
At1D1609_RS14650	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
At1D1609_RS14685	COG2264	protein methyltransferase activity
At1D1609_RS14700	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
At1D1609_RS14705	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
At1D1609_RS14710	COG0181	hydroxymethylbilane synthase activity
At1D1609_RS14745	COG1872	DUF167
At1D1609_RS14750	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
At1D1609_RS14760	COG1217	gtp-binding protein TYPA
At1D1609_RS14765	COG0339	signal peptide processing
At1D1609_RS14770	COG1846	Transcriptional regulator
At1D1609_RS14780	COG0137	argininosuccinate synthase activity
At1D1609_RS14790	COG1280	lysine exporter protein (LysE YggA)
At1D1609_RS14795	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
At1D1609_RS14800	COG4120	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS14810	COG0820	rRNA (adenine-C2-)-methyltransferase activity
At1D1609_RS14825	COG2154	pterin-4-alpha-carbinolamine dehydratase
At1D1609_RS14830	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
At1D1609_RS14835	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
At1D1609_RS14845	COG4181	ATPase activity
At1D1609_RS14855	COG0670	Belongs to the BI1 family
At1D1609_RS14870	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
At1D1609_RS14875	COG4133	protoheme IX ABC transporter activity
At1D1609_RS14885	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
At1D1609_RS14890	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
At1D1609_RS14915	COG2917	probably involved in intracellular septation
At1D1609_RS14920	COG0552	protein localization to endoplasmic reticulum
At1D1609_RS14925	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
At1D1609_RS14930	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
At1D1609_RS14945	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
At1D1609_RS14950	COG0287	Prephenate dehydrogenase
At1D1609_RS14950	COG1605	Chorismate mutase
At1D1609_RS14955	COG0228	four-way junction DNA binding
At1D1609_RS14960	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
At1D1609_RS14965	COG0336	Belongs to the RNA methyltransferase TrmD family
At1D1609_RS14975	COG0335	large ribosomal subunit rRNA binding
At1D1609_RS14980	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
At1D1609_RS14985	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_RS15005	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
At1D1609_RS15020	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
At1D1609_RS15040	COG0488	(ABC) transporter
At1D1609_RS15050	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
At1D1609_RS15060	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
At1D1609_RS15065	COG0142	geranyltranstransferase activity
At1D1609_RS15070	COG2885	chlorophyll binding
At1D1609_RS15075	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
At1D1609_RS15080	COG2223	nitrite transmembrane transporter activity
At1D1609_RS15085	COG1349	DNA-binding transcription factor activity
At1D1609_RS15090	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
At1D1609_RS15095	COG2197	response regulator
At1D1609_RS15100	COG1132	(ABC) transporter
At1D1609_RS15110	COG3459	Glycosyltransferase 36 associated
At1D1609_RS15115	COG1473	amidohydrolase
At1D1609_RS15125	COG0579	oxidoreductase
At1D1609_RS15135	COG0129	dihydroxy-acid dehydratase activity
At1D1609_RS15140	COG2084	Dehydrogenase
At1D1609_RS15145	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_RS15150	COG0277	FAD linked oxidase domain protein
At1D1609_RS15155	COG2186	Transcriptional regulator
At1D1609_RS15165	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
At1D1609_RS15170	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_RS15175	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS15180	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
At1D1609_RS15190	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
At1D1609_RS15195	COG0495	leucyl-tRNA aminoacylation
At1D1609_RS15210	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
At1D1609_RS15215	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
At1D1609_RS15230	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_RS15235	COG1946	Acyl-CoA thioesterase
At1D1609_RS15240	COG0347	Belongs to the P(II) protein family
At1D1609_RS15245	COG0004	ammonium transporteR
At1D1609_RS15250	COG1674	ftsk spoiiie
At1D1609_RS15255	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
At1D1609_RS15270	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS15280	COG1329	Transcriptional regulator
At1D1609_RS15290	COG2270	Major facilitator Superfamily
At1D1609_RS15305	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS15320	COG0494	nUDIX hydrolase
At1D1609_RS15325	COG2861	carbohydrate metabolic process
At1D1609_RS15330	COG0793	Belongs to the peptidase S41A family
At1D1609_RS15340	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
At1D1609_RS15350	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
At1D1609_RS15355	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
At1D1609_RS15360	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
At1D1609_RS15365	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
At1D1609_RS15380	COG0211	Belongs to the bacterial ribosomal protein bL27 family
At1D1609_RS15385	COG0261	This protein binds to 23S rRNA in the presence of protein L20
At1D1609_RS15410	COG0066	3-isopropylmalate dehydratase activity
At1D1609_RS15415	COG0473	3-isopropylmalate dehydrogenase activity
At1D1609_RS15420	COG1858	cytochrome C peroxidase
At1D1609_RS15425	COG1797	cobyrinic acid a,c-diamide synthase activity
At1D1609_RS15435	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
At1D1609_RS15500	COG1492	cobalamin metabolic process
At1D1609_RS15515	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1609_RS15520	COG3254	rhamnose metabolic process
At1D1609_RS15525	COG0246	Mannitol dehydrogenase
At1D1609_RS15530	COG1063	alcohol dehydrogenase
At1D1609_RS15550	COG4214	carbohydrate transport
At1D1609_RS15555	COG1129	ABC transporter
At1D1609_RS15560	COG2186	Transcriptional regulator
At1D1609_RS15565	COG2721	sulfolactate sulfo-lyase activity
At1D1609_RS15570	COG0138	bifunctional purine biosynthesis protein purh
At1D1609_RS15580	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
At1D1609_RS15580	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
At1D1609_RS15585	COG0501	Belongs to the peptidase M48B family
At1D1609_RS15605	COG0357	Ribosomal RNA small subunit methyltransferase G
At1D1609_RS15610	COG0445	tRNA wobble uridine modification
At1D1609_RS15615	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
At1D1609_RS15620	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
At1D1609_RS15625	COG1981	membrane
At1D1609_RS15630	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
At1D1609_RS15650	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D1609_RS15660	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D1609_RS15700	COG0596	Alpha beta hydrolase
At1D1609_RS15715	COG1764	response to oxidative stress
At1D1609_RS15730	COG0783	Belongs to the Dps family
At1D1609_RS15735	COG0243	molybdopterin cofactor binding
At1D1609_RS15745	COG4566	intracellular signal transduction
At1D1609_RS15750	COG4566	intracellular signal transduction
At1D1609_RS15760	COG2140	Oxalate decarboxylase
At1D1609_RS15765	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_RS15775	COG0702	epimerase
At1D1609_RS15785	COG2233	PERMEase
At1D1609_RS15835	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS15850	COG3842	ATPase activity
At1D1609_RS15885	COG1653	transport
At1D1609_RS15900	COG3842	ATPase activity
At1D1609_RS15910	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS15915	COG1175	transmembrane transport
At1D1609_RS15945	COG1609	Transcriptional regulator
At1D1609_RS15960	COG1082	Xylose isomerase domain protein TIM barrel
At1D1609_RS15970	COG3842	ATPase activity
At1D1609_RS15975	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS15980	COG1175	transmembrane transport
At1D1609_RS15985	COG1653	transport
At1D1609_RS15990	COG1309	transcriptional regulator
At1D1609_RS15995	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS16010	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS16015	COG1278	Cold shock
At1D1609_RS16040	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1609_RS16045	COG1136	(ABC) transporter
At1D1609_RS16045	COG0577	efflux transmembrane transporter activity
At1D1609_RS16050	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_RS16075	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
At1D1609_RS16090	COG3842	ATPase activity
At1D1609_RS16095	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS16100	COG1175	transmembrane transport
At1D1609_RS16120	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS16125	COG3618	amidohydrolase
At1D1609_RS16130	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1609_RS16135	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_RS16140	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS16145	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
At1D1609_RS16150	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_RS16155	COG2186	Transcriptional regulator
At1D1609_RS16200	COG4977	sequence-specific DNA binding
At1D1609_RS16205	COG2223	nitrite transmembrane transporter activity
At1D1609_RS16210	COG0583	DNA-binding transcription factor activity
At1D1609_RS16215	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_RS16225	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS16230	COG2084	Dehydrogenase
At1D1609_RS16245	COG1609	Transcriptional regulator
At1D1609_RS16250	COG1063	alcohol dehydrogenase
At1D1609_RS16255	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS16265	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_RS16270	COG4573	that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of
At1D1609_RS16275	COG1175	transmembrane transport
At1D1609_RS16280	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS16300	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS16305	COG1175	transmembrane transport
At1D1609_RS16310	COG2182	Extracellular solute-binding protein
At1D1609_RS16315	COG0626	cystathionine gamma-synthase activity
At1D1609_RS16330	COG0803	Belongs to the bacterial solute-binding protein 9 family
At1D1609_RS16340	COG1121	(ABC) transporter
At1D1609_RS16345	COG0523	cobalamin synthesis protein
At1D1609_RS16360	COG0523	cobalamin synthesis protein
At1D1609_RS16365	COG1653	transport
At1D1609_RS16370	COG1175	transmembrane transport
At1D1609_RS16375	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS16380	COG3842	ATPase activity
At1D1609_RS16390	COG3047	cAMP biosynthetic process
At1D1609_RS16415	COG0583	DNA-binding transcription factor activity
At1D1609_RS16420	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_RS16425	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS16430	COG1129	ABC transporter
At1D1609_RS16440	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D1609_RS16445	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_RS16455	COG3257	ureidoglycine aminohydrolase activity
At1D1609_RS16465	COG5001	Diguanylate cyclase
At1D1609_RS16470	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D1609_RS16480	COG0747	negative chemotaxis
At1D1609_RS16485	COG0601	transmembrane transport
At1D1609_RS16490	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS16495	COG0444	Belongs to the ABC transporter superfamily
At1D1609_RS16500	COG4608	Belongs to the ABC transporter superfamily
At1D1609_RS16505	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
At1D1609_RS16520	COG0346	lactoylglutathione lyase activity
At1D1609_RS16530	COG0129	dihydroxy-acid dehydratase activity
At1D1609_RS16535	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_RS16540	COG1129	ABC transporter
At1D1609_RS16545	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS16550	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS16555	COG2186	Transcriptional regulator
At1D1609_RS16570	COG0587	DNA-directed DNA polymerase activity
At1D1609_RS16600	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS16610	COG3842	ATPase activity
At1D1609_RS16615	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS16620	COG1175	transmembrane transport
At1D1609_RS16625	COG1653	transport
At1D1609_RS16635	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS16650	COG5001	Diguanylate cyclase
At1D1609_RS16665	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
At1D1609_RS16670	COG2894	cell division
At1D1609_RS16675	COG0850	regulation of cytokinetic process
At1D1609_RS16680	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D1609_RS16690	COG2186	Transcriptional regulator
At1D1609_RS16695	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS16705	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_RS16710	COG1063	alcohol dehydrogenase
At1D1609_RS16715	COG1312	Catalyzes the dehydration of D-mannonate
At1D1609_RS16735	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS16740	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
At1D1609_RS16740	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_RS16745	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS16760	COG0625	glutathione transferase activity
At1D1609_RS16765	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS16770	COG1921	L-seryl-tRNASec selenium transferase activity
At1D1609_RS16785	COG3964	amidohydrolase
At1D1609_RS16795	COG0601	transmembrane transport
At1D1609_RS16800	COG0747	negative chemotaxis
At1D1609_RS16805	COG0438	transferase activity, transferring glycosyl groups
At1D1609_RS16840	COG4989	oxidoreductase activity
At1D1609_RS16855	COG3842	ATPase activity
At1D1609_RS16860	COG1653	transport
At1D1609_RS16865	COG1175	transmembrane transport
At1D1609_RS16870	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS16875	COG1501	Belongs to the glycosyl hydrolase 31 family
At1D1609_RS16885	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_RS16890	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1609_RS16895	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
At1D1609_RS16900	COG0352	thiamine-phosphate diphosphorylase activity
At1D1609_RS16905	COG0351	phosphomethylpyrimidine kinase
At1D1609_RS16915	COG1522	sequence-specific DNA binding
At1D1609_RS16920	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
At1D1609_RS16925	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS16940	COG2204	response regulator
At1D1609_RS16945	COG4191	Histidine kinase
At1D1609_RS16950	COG1301	dicarboxylic acid transport
At1D1609_RS16960	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D1609_RS16965	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS16975	COG1473	amidohydrolase
At1D1609_RS16995	COG1215	transferase activity, transferring glycosyl groups
At1D1609_RS17005	COG2942	2-epimerase
At1D1609_RS17075	COG3307	-O-antigen
At1D1609_RS17080	COG1596	polysaccharide export
At1D1609_RS17085	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
At1D1609_RS17100	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D1609_RS17105	COG0840	transmembrane signaling receptor activity
At1D1609_RS17110	COG1376	ErfK ybiS ycfS ynhG family protein
At1D1609_RS17120	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS17130	COG2094	Belongs to the DNA glycosylase MPG family
At1D1609_RS17145	COG1609	Transcriptional regulator
At1D1609_RS17150	COG1653	transport
At1D1609_RS17165	COG3842	ATPase activity
At1D1609_RS17175	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS17180	COG0602	queuosine metabolic process
At1D1609_RS17185	COG0720	synthase
At1D1609_RS17190	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
At1D1609_RS17195	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS17210	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS17215	COG1175	transmembrane transport
At1D1609_RS17235	COG0280	phosphate acetyltransferase
At1D1609_RS17235	COG0281	malic enzyme
At1D1609_RS17255	COG0765	amino acid transport
At1D1609_RS17260	COG1126	abc transporter atp-binding protein
At1D1609_RS17265	COG2079	MmgE PrpD family protein
At1D1609_RS17270	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS17280	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS17300	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
At1D1609_RS17310	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D1609_RS17315	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
At1D1609_RS17320	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS17325	COG1129	ABC transporter
At1D1609_RS17340	COG1473	amidohydrolase
At1D1609_RS17345	COG0747	negative chemotaxis
At1D1609_RS17360	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS17365	COG0601	transmembrane transport
At1D1609_RS17370	COG0583	DNA-binding transcription factor activity
At1D1609_RS17375	COG1446	asparaginase
At1D1609_RS17390	COG0747	negative chemotaxis
At1D1609_RS17410	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS17415	COG0601	transmembrane transport
At1D1609_RS17420	COG2197	response regulator
At1D1609_RS17425	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D1609_RS17430	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_RS17445	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS17450	COG1175	transmembrane transport
At1D1609_RS17460	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS17465	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS17485	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_RS17490	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
At1D1609_RS17510	COG1595	DNA-templated transcription, initiation
At1D1609_RS17515	COG1120	ATPase activity
At1D1609_RS17520	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS17535	COG2226	methyltransferase
At1D1609_RS17550	COG1120	ATPase activity
At1D1609_RS17555	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS17575	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D1609_RS17600	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS17605	COG0473	3-isopropylmalate dehydrogenase activity
At1D1609_RS17610	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS17615	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS17650	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS17655	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS17660	COG1522	sequence-specific DNA binding
At1D1609_RS17685	COG0583	DNA-binding transcription factor activity
At1D1609_RS17695	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_RS17700	COG1126	abc transporter atp-binding protein
At1D1609_RS17710	COG1473	amidohydrolase
At1D1609_RS17715	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS17720	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS17725	COG1959	2 iron, 2 sulfur cluster binding
At1D1609_RS17735	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1609_RS17740	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS17765	COG1960	acyl-CoA dehydrogenase activity
At1D1609_RS17790	COG0444	Belongs to the ABC transporter superfamily
At1D1609_RS17800	COG0667	Aldo Keto reductase
At1D1609_RS17810	COG0583	DNA-binding transcription factor activity
At1D1609_RS17815	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS17820	COG4166	transmembrane transport
At1D1609_RS17830	COG0747	negative chemotaxis
At1D1609_RS17835	COG1473	amidohydrolase
At1D1609_RS17840	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS17845	COG0702	epimerase
At1D1609_RS17855	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS17860	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS17885	COG4608	Belongs to the ABC transporter superfamily
At1D1609_RS17890	COG0444	Belongs to the ABC transporter superfamily
At1D1609_RS17900	COG0601	transmembrane transport
At1D1609_RS17910	COG2186	Transcriptional regulator
At1D1609_RS17925	COG0300	oxidoreductase activity
At1D1609_RS17935	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D1609_RS17935	COG3453	Protein conserved in bacteria
At1D1609_RS17940	COG0640	Transcriptional regulator
At1D1609_RS17950	COG2391	methyltransferase activity
At1D1609_RS17955	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
At1D1609_RS17975	COG0022	dehydrogenase e1 component
At1D1609_RS17985	COG1960	acyl-CoA dehydrogenase activity
At1D1609_RS17990	COG0183	Belongs to the thiolase family
At1D1609_RS18000	COG1960	acyl-CoA dehydrogenase activity
At1D1609_RS18005	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
At1D1609_RS18025	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
At1D1609_RS18030	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
At1D1609_RS18035	COG4952	isomerase
At1D1609_RS18040	COG3347	Dehydrogenase
At1D1609_RS18040	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS18045	COG1349	DNA-binding transcription factor activity
At1D1609_RS18060	COG1129	ABC transporter
At1D1609_RS18065	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS18070	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS18075	COG3254	rhamnose metabolic process
At1D1609_RS18090	COG2264	protein methyltransferase activity
At1D1609_RS18095	COG5001	Diguanylate cyclase
At1D1609_RS18115	COG4335	DNA alkylation repair
At1D1609_RS18120	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
At1D1609_RS18125	COG4208	sulfate ABC transporter
At1D1609_RS18140	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
At1D1609_RS18155	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D1609_RS18165	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1609_RS18175	COG1040	competence protein
At1D1609_RS18180	COG2226	methyltransferase
At1D1609_RS18195	COG0494	nUDIX hydrolase
At1D1609_RS18205	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
At1D1609_RS18210	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
At1D1609_RS18215	COG0653	protein targeting
At1D1609_RS18220	COG0697	spore germination
At1D1609_RS18280	COG2244	polysaccharide biosynthetic process
At1D1609_RS18300	COG3206	protein involved in exopolysaccharide biosynthesis
At1D1609_RS18300	COG0489	protein tyrosine kinase activity
At1D1609_RS18320	COG0438	transferase activity, transferring glycosyl groups
At1D1609_RS18325	COG0438	transferase activity, transferring glycosyl groups
At1D1609_RS18335	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
At1D1609_RS18340	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
At1D1609_RS18340	COG2273	Hydrolase Family 16
At1D1609_RS18385	COG1396	sequence-specific DNA binding
At1D1609_RS18395	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
At1D1609_RS18400	COG1129	ABC transporter
At1D1609_RS18405	COG4214	carbohydrate transport
At1D1609_RS18410	COG4213	ABC transporter substrate-binding protein
At1D1609_RS18425	COG0346	lactoylglutathione lyase activity
At1D1609_RS18430	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
At1D1609_RS18430	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
At1D1609_RS18435	COG4770	biotin carboxylase activity
At1D1609_RS18450	COG0625	glutathione transferase activity
At1D1609_RS18455	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
At1D1609_RS18460	COG1396	sequence-specific DNA binding
At1D1609_RS18460	COG3800	Transcriptional regulator
At1D1609_RS18470	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
At1D1609_RS18480	COG0300	oxidoreductase activity
At1D1609_RS18490	COG2096	Adenosyltransferase
At1D1609_RS18500	COG2086	electron transfer activity
At1D1609_RS18510	COG1250	3-hydroxyacyl-CoA dehydrogenase
At1D1609_RS18515	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
At1D1609_RS18520	COG0165	Argininosuccinate lyase
At1D1609_RS18555	COG2884	Cell division ATP-binding protein ftsE
At1D1609_RS18575	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
At1D1609_RS18585	COG0287	Prephenate dehydrogenase
At1D1609_RS18590	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
At1D1609_RS18595	COG2226	methyltransferase
At1D1609_RS18600	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D1609_RS18615	COG0227	Belongs to the bacterial ribosomal protein bL28 family
At1D1609_RS18620	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
At1D1609_RS18655	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
At1D1609_RS18660	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
At1D1609_RS18675	COG4974	Belongs to the 'phage' integrase family
At1D1609_RS18680	COG0825	malonyl-CoA metabolic process
At1D1609_RS18685	COG3034	peptidoglycan biosynthetic process
At1D1609_RS18690	COG0425	Belongs to the sulfur carrier protein TusA family
At1D1609_RS18690	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
At1D1609_RS18700	COG0523	cobalamin synthesis protein
At1D1609_RS18705	COG1686	Belongs to the peptidase S11 family
At1D1609_RS18710	COG1473	amidohydrolase
At1D1609_RS18725	COG3621	Patatin-like phospholipase
At1D1609_RS18765	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
At1D1609_RS18765	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
At1D1609_RS18780	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
At1D1609_RS18805	COG0798	PFAM Bile acid sodium symporter
At1D1609_RS18815	COG0431	NADPH-dependent FMN reductase
At1D1609_RS18840	COG0583	DNA-binding transcription factor activity
At1D1609_RS18845	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS18865	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
At1D1609_RS18870	COG0828	Belongs to the bacterial ribosomal protein bS21 family
At1D1609_RS18935	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D1609_RS18965	COG1431	PFAM Stem cell self-renewal protein Piwi
At1D1609_RS19055	COG0232	Belongs to the dGTPase family. Type 2 subfamily
At1D1609_RS19065	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
At1D1609_RS19075	COG1059	Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine 7-oxoG) from DNA. Also nicks DNA at apurinic apyrimidinic sites (AP sites)
At1D1609_RS19090	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
At1D1609_RS19140	COG4953	penicillin-binding protein 1C
At1D1609_RS19145	COG2373	Large extracellular alpha-helical protein
At1D1609_RS19150	COG2835	tetraacyldisaccharide 4'-kinase activity
At1D1609_RS19180	COG0482	sulfurtransferase activity
At1D1609_RS19195	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D1609_RS19210	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
At1D1609_RS19215	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
At1D1609_RS19220	COG0037	tRNA processing
At1D1609_RS19230	COG2885	chlorophyll binding
At1D1609_RS19235	COG0823	Involved in the tonB-independent uptake of proteins
At1D1609_RS19255	COG0824	Thioesterase
At1D1609_RS19265	COG0494	nUDIX hydrolase
At1D1609_RS19280	COG2255	four-way junction helicase activity
At1D1609_RS19295	COG0632	four-way junction helicase activity
At1D1609_RS19300	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
At1D1609_RS19305	COG0840	transmembrane signaling receptor activity
At1D1609_RS19310	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS19315	COG0217	transcriptional regulatory protein
At1D1609_RS19330	COG1692	metallophosphoesterase
At1D1609_RS19340	COG1253	flavin adenine dinucleotide binding
At1D1609_RS19380	COG0126	phosphoglycerate kinase activity
At1D1609_RS19385	COG3588	fructose-bisphosphate aldolase
At1D1609_RS19390	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_RS19390	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
At1D1609_RS19395	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS19405	COG1414	Transcriptional regulator
At1D1609_RS19420	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS19460	COG0254	rRNA binding
At1D1609_RS19465	COG1132	(ABC) transporter
At1D1609_RS19485	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_RS19515	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
At1D1609_RS19520	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
At1D1609_RS19525	COG0257	Belongs to the bacterial ribosomal protein bL36 family
At1D1609_RS19530	COG0457	Tetratricopeptide repeat
At1D1609_RS19540	COG3750	Belongs to the UPF0335 family
At1D1609_RS19560	COG0469	pyruvate kinase activity
At1D1609_RS19565	COG3108	Peptidase M15
At1D1609_RS19570	COG2204	response regulator
At1D1609_RS19575	COG1164	Oligoendopeptidase f
At1D1609_RS19580	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D1609_RS19590	COG5310	Homospermidine synthase
At1D1609_RS19600	COG0737	Belongs to the 5'-nucleotidase family
At1D1609_RS19605	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
At1D1609_RS19610	COG0330	HflC and HflK could
At1D1609_RS19640	COG1210	Utp--glucose-1-phosphate uridylyltransferase
At1D1609_RS19645	COG2951	lytic endotransglycosylase activity
At1D1609_RS19660	COG2205	protein histidine kinase activity
At1D1609_RS19670	COG0067	glutamate synthase
At1D1609_RS19670	COG0070	glutamate synthase
At1D1609_RS19670	COG0069	glutamate synthase activity
At1D1609_RS19685	COG2205	protein histidine kinase activity
At1D1609_RS19690	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
At1D1609_RS19695	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
At1D1609_RS19700	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
At1D1609_RS19710	COG0252	asparaginase activity
At1D1609_RS19720	COG1027	Aspartate ammonia-lyase
At1D1609_RS19725	COG2186	Transcriptional regulator
At1D1609_RS19760	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS19780	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS19785	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS19795	COG2267	carboxylic ester hydrolase activity
At1D1609_RS19815	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1609_RS19820	COG4175	Glycine betaine
At1D1609_RS19820	COG0517	IMP dehydrogenase activity
At1D1609_RS19825	COG2986	histidine ammonia-lyase
At1D1609_RS19840	COG0174	glutamine synthetase
At1D1609_RS19845	COG0069	glutamate synthase activity
At1D1609_RS19850	COG2218	PFAM glutamate synthase alpha subunit domain protein
At1D1609_RS19855	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
At1D1609_RS19865	COG4977	sequence-specific DNA binding
At1D1609_RS19870	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS19875	COG4311	Sarcosine oxidase, delta subunit
At1D1609_RS19880	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1609_RS19880	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1609_RS19890	COG2186	Transcriptional regulator
At1D1609_RS19900	COG0765	amino acid transport
At1D1609_RS19910	COG3842	ATPase activity
At1D1609_RS19925	COG1177	transmembrane transport
At1D1609_RS19935	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1609_RS19950	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_RS19960	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS19965	COG0601	transmembrane transport
At1D1609_RS19970	COG0747	negative chemotaxis
At1D1609_RS19980	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D1609_RS19985	COG1454	alcohol dehydrogenase
At1D1609_RS20030	COG2308	Evidence 4 Homologs of previously reported genes of
At1D1609_RS20030	COG2307	Protein conserved in bacteria
At1D1609_RS20045	COG0488	(ABC) transporter
At1D1609_RS20050	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1609_RS20055	COG2186	Transcriptional regulator
At1D1609_RS20070	COG1175	transmembrane transport
At1D1609_RS20075	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS20085	COG3842	ATPase activity
At1D1609_RS20110	COG1304	FMN binding
At1D1609_RS20125	COG1063	alcohol dehydrogenase
At1D1609_RS20130	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D1609_RS20135	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_RS20145	COG0765	amino acid transport
At1D1609_RS20150	COG0765	amino acid transport
At1D1609_RS20155	COG4221	oxidoreductase activity
At1D1609_RS20160	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1609_RS20165	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS20170	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_RS20185	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D1609_RS20200	COG0697	spore germination
At1D1609_RS20205	COG0697	spore germination
At1D1609_RS20210	COG0511	ligase activity, forming carbon-carbon bonds
At1D1609_RS20215	COG0439	Biotin carboxylase
At1D1609_RS20225	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1609_RS20230	COG1984	allophanate hydrolase subunit 2
At1D1609_RS20235	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1609_RS20240	COG3842	ATPase activity
At1D1609_RS20250	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1609_RS20260	COG0436	Aminotransferase
At1D1609_RS20265	COG4221	oxidoreductase activity
At1D1609_RS20280	COG1070	Carbohydrate kinase
At1D1609_RS20285	COG1830	Aldolase
At1D1609_RS20290	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
At1D1609_RS20295	COG0667	Aldo Keto reductase
At1D1609_RS20305	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS20310	COG1129	ABC transporter
At1D1609_RS20315	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_RS20320	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D1609_RS20330	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS20335	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS20340	COG0601	transmembrane transport
At1D1609_RS20345	COG4166	transmembrane transport
At1D1609_RS20350	COG4974	Belongs to the 'phage' integrase family
At1D1609_RS20415	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
At1D1609_RS20430	COG0328	RNA-DNA hybrid ribonuclease activity
At1D1609_RS20670	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D1609_RS20685	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D1609_RS20700	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS20710	COG3842	ATPase activity
At1D1609_RS20715	COG3842	ATPase activity
At1D1609_RS20730	COG1648	precorrin-2 dehydrogenase activity
At1D1609_RS20730	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
At1D1609_RS20735	COG0243	molybdopterin cofactor binding
At1D1609_RS20750	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
At1D1609_RS20755	COG1116	anion transmembrane transporter activity
At1D1609_RS20760	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_RS20765	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1609_RS20770	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1609_RS20775	COG3707	response regulator
At1D1609_RS20780	COG1802	Transcriptional regulator
At1D1609_RS20785	COG1914	H( )-stimulated, divalent metal cation uptake system
At1D1609_RS20790	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1609_RS20795	COG4336	lyase activity
At1D1609_RS20800	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
At1D1609_RS20805	COG4770	biotin carboxylase activity
At1D1609_RS20810	COG0366	Alpha amylase catalytic
At1D1609_RS20820	COG4771	TonB-dependent receptor
At1D1609_RS20845	COG1414	Transcriptional regulator
At1D1609_RS20850	COG1475	DNA binding
At1D1609_RS20855	COG1192	Involved in chromosome partitioning
At1D1609_RS20885	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
At1D1609_RS20895	COG2986	histidine ammonia-lyase
At1D1609_RS20900	COG1228	amidohydrolase
At1D1609_RS20905	COG0402	S-adenosylhomocysteine deaminase activity
At1D1609_RS20970	COG1120	ATPase activity
At1D1609_RS20975	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS20980	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS20985	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
At1D1609_RS20990	COG4774	siderophore transport
At1D1609_RS20990	COG1629	transport
At1D1609_RS21040	COG2226	methyltransferase
At1D1609_RS21075	COG2091	lysine biosynthetic process via aminoadipic acid
At1D1609_RS21080	COG1959	2 iron, 2 sulfur cluster binding
At1D1609_RS21115	COG3485	protocatechuate 3,4-dioxygenase
At1D1609_RS21120	COG3971	2-oxopent-4-enoate hydratase activity
At1D1609_RS21135	COG1309	transcriptional regulator
At1D1609_RS21140	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS21170	COG1846	Transcriptional regulator
At1D1609_RS21175	COG0583	DNA-binding transcription factor activity
At1D1609_RS21180	COG2828	Protein conserved in bacteria
At1D1609_RS21195	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_RS21205	COG0840	transmembrane signaling receptor activity
At1D1609_RS21210	COG0431	NADPH-dependent FMN reductase
At1D1609_RS21265	COG0583	DNA-binding transcription factor activity
At1D1609_RS21270	COG0346	lactoylglutathione lyase activity
At1D1609_RS21285	COG1574	metal-dependent hydrolase with the TIM-barrel fold
At1D1609_RS21310	COG0583	DNA-binding transcription factor activity
At1D1609_RS21315	COG0477	Major facilitator Superfamily
At1D1609_RS21325	COG5002	protein histidine kinase activity
At1D1609_RS21325	COG3850	Histidine kinase
At1D1609_RS21330	COG0745	RESPONSE REGULATOR receiver
At1D1609_RS21335	COG0671	phosphoesterase, PA-phosphatase related
At1D1609_RS21385	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
At1D1609_RS21395	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
At1D1609_RS21400	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D1609_RS21420	COG0010	Belongs to the arginase family
At1D1609_RS21430	COG0697	spore germination
At1D1609_RS21440	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS21470	COG0477	Major facilitator Superfamily
At1D1609_RS21485	COG2194	sulfuric ester hydrolase activity
At1D1609_RS21495	COG0583	DNA-binding transcription factor activity
At1D1609_RS21500	COG4774	siderophore transport
At1D1609_RS21515	COG1120	ATPase activity
At1D1609_RS21525	COG3474	cytochrome
At1D1609_RS21530	COG2137	regulation of response to DNA damage stimulus
At1D1609_RS21535	COG3386	PFAM SMP-30 Gluconolaconase
At1D1609_RS21545	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS21550	COG1129	ABC transporter
At1D1609_RS21555	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_RS21565	COG4585	Histidine kinase
At1D1609_RS21570	COG2197	response regulator
At1D1609_RS21580	COG2133	pyrroloquinoline quinone binding
At1D1609_RS21590	COG0500	methyltransferase
At1D1609_RS21610	COG4175	Glycine betaine
At1D1609_RS21610	COG3448	diguanylate cyclase activity
At1D1609_RS21615	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1609_RS21625	COG4191	Histidine kinase
At1D1609_RS21625	COG0784	Response regulator, receiver
At1D1609_RS21635	COG3206	protein involved in exopolysaccharide biosynthesis
At1D1609_RS21635	COG0489	protein tyrosine kinase activity
At1D1609_RS21640	COG1210	Utp--glucose-1-phosphate uridylyltransferase
At1D1609_RS21645	COG1215	transferase activity, transferring glycosyl groups
At1D1609_RS21650	COG1215	transferase activity, transferring glycosyl groups
At1D1609_RS21655	COG1215	transferase activity, transferring glycosyl groups
At1D1609_RS21660	COG0438	transferase activity, transferring glycosyl groups
At1D1609_RS21665	COG2273	Hydrolase Family 16
At1D1609_RS21670	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D1609_RS21675	COG2244	polysaccharide biosynthetic process
At1D1609_RS21680	COG0463	Glycosyl transferase, family 2
At1D1609_RS21685	COG2327	Polysaccharide pyruvyl transferase
At1D1609_RS21690	COG1215	transferase activity, transferring glycosyl groups
At1D1609_RS21710	COG0828	Belongs to the bacterial ribosomal protein bS21 family
At1D1609_RS21720	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS21735	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1609_RS21735	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1609_RS21760	COG0033	Phosphoglucomutase
At1D1609_RS21765	COG0297	glycogen (starch) synthase activity
At1D1609_RS21770	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
At1D1609_RS21775	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
At1D1609_RS21780	COG0058	SHG alpha-glucan phosphorylase activity
At1D1609_RS21795	COG1794	racemase activity, acting on amino acids and derivatives
At1D1609_RS21800	COG1522	sequence-specific DNA binding
At1D1609_RS21810	COG2084	Dehydrogenase
At1D1609_RS21815	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS21820	COG1063	alcohol dehydrogenase
At1D1609_RS21835	COG4988	ABC transporter
At1D1609_RS21840	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
At1D1609_RS21850	COG1294	oxidase, subunit
At1D1609_RS21880	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
At1D1609_RS21885	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
At1D1609_RS21915	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
At1D1609_RS21920	COG0539	negative regulation of cytoplasmic translation
At1D1609_RS21950	COG4221	oxidoreductase activity
At1D1609_RS21960	COG0006	proline dipeptidase activity
At1D1609_RS21965	COG0747	negative chemotaxis
At1D1609_RS21970	COG0601	transmembrane transport
At1D1609_RS21975	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS21980	COG0444	Belongs to the ABC transporter superfamily
At1D1609_RS21985	COG4608	Belongs to the ABC transporter superfamily
At1D1609_RS21990	COG0246	Mannitol dehydrogenase
At1D1609_RS22005	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS22050	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
At1D1609_RS22055	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS22065	COG4993	Dehydrogenase
At1D1609_RS22070	COG3685	Protein conserved in bacteria
At1D1609_RS22075	COG1285	pathogenesis
At1D1609_RS22080	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS22100	COG0693	protein deglycase activity
At1D1609_RS22125	COG0189	ligase activity
At1D1609_RS22130	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_RS22135	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
At1D1609_RS22145	COG0435	Glutathione S-transferase
At1D1609_RS22150	COG0583	DNA-binding transcription factor activity
At1D1609_RS22155	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS22165	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D1609_RS22170	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_RS22175	COG1116	anion transmembrane transporter activity
At1D1609_RS22185	COG1522	sequence-specific DNA binding
At1D1609_RS22200	COG0784	Response regulator, receiver
At1D1609_RS22220	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
At1D1609_RS22235	COG0019	diaminopimelate decarboxylase activity
At1D1609_RS22255	COG0527	aspartate kinase activity
At1D1609_RS22265	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
At1D1609_RS22270	COG2890	protein-(glutamine-N5) methyltransferase activity
At1D1609_RS22280	COG0542	response to heat
At1D1609_RS22285	COG1196	nuclear chromosome segregation
At1D1609_RS22285	COG0739	heme binding
At1D1609_RS22285	COG0741	lytic transglycosylase activity
At1D1609_RS22355	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D1609_RS22370	COG0583	DNA-binding transcription factor activity
At1D1609_RS22380	COG1609	Transcriptional regulator
At1D1609_RS22495	COG1609	Transcriptional regulator
At1D1609_RS22520	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS22530	COG0596	Alpha beta hydrolase
At1D1609_RS22560	COG1454	alcohol dehydrogenase
At1D1609_RS22605	COG0583	DNA-binding transcription factor activity
At1D1609_RS22610	COG3842	ATPase activity
At1D1609_RS22620	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS22630	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_RS22635	COG4208	sulfate ABC transporter
At1D1609_RS22690	COG4191	Histidine kinase
At1D1609_RS22690	COG0784	Response regulator, receiver
At1D1609_RS22695	COG3920	Histidine kinase
At1D1609_RS22695	COG2202	Pas domain
At1D1609_RS22700	COG0784	Response regulator, receiver
At1D1609_RS22705	COG4191	Histidine kinase
At1D1609_RS22705	COG0784	Response regulator, receiver
At1D1609_RS22720	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D1609_RS22730	COG0583	DNA-binding transcription factor activity
At1D1609_RS22735	COG0667	Aldo Keto reductase
At1D1609_RS22740	COG1609	Transcriptional regulator
At1D1609_RS22745	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS22755	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS22765	COG4221	oxidoreductase activity
At1D1609_RS22785	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
At1D1609_RS22790	COG0297	glycogen (starch) synthase activity
At1D1609_RS22830	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS22870	COG2376	Dihydroxyacetone kinase
At1D1609_RS22875	COG1522	sequence-specific DNA binding
At1D1609_RS22895	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D1609_RS22900	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_RS22925	COG0583	DNA-binding transcription factor activity
At1D1609_RS22930	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_RS22945	COG3842	ATPase activity
At1D1609_RS22950	COG1177	transmembrane transport
At1D1609_RS22995	COG3842	ATPase activity
At1D1609_RS23000	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_RS23005	COG1177	transmembrane transport
At1D1609_RS23010	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
At1D1609_RS23020	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D1609_RS23030	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
At1D1609_RS23035	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
At1D1609_RS23040	COG1845	cytochrome c oxidase, subunit III
At1D1609_RS23070	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1609_RS23070	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D1609_RS23080	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
At1D1609_RS23095	COG1309	transcriptional regulator
At1D1609_RS23105	COG1063	alcohol dehydrogenase
At1D1609_RS23115	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_RS23125	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS23265	COG3300	MHYT domain
At1D1609_RS23265	COG5001	Diguanylate cyclase
At1D1609_RS23270	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_RS23295	COG3842	ATPase activity
At1D1609_RS23300	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS23305	COG1175	transmembrane transport
At1D1609_RS23310	COG1653	transport
At1D1609_RS23320	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS23325	COG1609	Transcriptional regulator
At1D1609_RS23340	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_RS23345	COG1129	ABC transporter
At1D1609_RS23350	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS23355	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS23360	COG1609	Transcriptional regulator
At1D1609_RS23370	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS23430	COG0714	Associated with various cellular activities
At1D1609_RS23435	COG3256	nitric oxide reductase
At1D1609_RS23450	COG1845	cytochrome c oxidase, subunit III
At1D1609_RS23465	COG0163	prenyltransferase activity
At1D1609_RS23470	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
At1D1609_RS23475	COG3189	MarR family transcriptional regulator
At1D1609_RS23485	COG0826	peptidase U32
At1D1609_RS23520	COG4459	periplasmic nitrate reductase
At1D1609_RS23535	COG0243	molybdopterin cofactor binding
At1D1609_RS23545	COG3005	denitrification pathway
At1D1609_RS23570	COG2375	cellular response to nickel ion
At1D1609_RS23580	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS23585	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS23595	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D1609_RS23605	COG4774	siderophore transport
At1D1609_RS23605	COG1629	transport
At1D1609_RS23610	COG1960	acyl-CoA dehydrogenase activity
At1D1609_RS23615	COG0583	DNA-binding transcription factor activity
At1D1609_RS23620	COG1609	Transcriptional regulator
At1D1609_RS23640	COG3842	ATPase activity
At1D1609_RS23650	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
At1D1609_RS23655	COG1473	amidohydrolase
At1D1609_RS23670	COG0747	negative chemotaxis
At1D1609_RS23675	COG0601	transmembrane transport
At1D1609_RS23680	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS23685	COG0444	Belongs to the ABC transporter superfamily
At1D1609_RS23695	COG0583	DNA-binding transcription factor activity
At1D1609_RS23700	COG0747	negative chemotaxis
At1D1609_RS23710	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS23715	COG0154	amidase activity
At1D1609_RS23720	COG0693	protein deglycase activity
At1D1609_RS23730	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS23735	COG0601	transmembrane transport
At1D1609_RS23745	COG1473	amidohydrolase
At1D1609_RS23750	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS23755	COG2390	Transcriptional regulator
At1D1609_RS23765	COG1175	transmembrane transport
At1D1609_RS23770	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS23790	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D1609_RS23820	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D1609_RS23835	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
At1D1609_RS23840	COG1414	Transcriptional regulator
At1D1609_RS23845	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS23855	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D1609_RS23860	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D1609_RS23865	COG1121	(ABC) transporter
At1D1609_RS23870	COG0803	Belongs to the bacterial solute-binding protein 9 family
At1D1609_RS23880	COG1752	Esterase of the alpha-beta hydrolase superfamily
At1D1609_RS23885	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
At1D1609_RS23895	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
At1D1609_RS23900	COG0471	metal ion transport
At1D1609_RS23900	COG3273	potassium ion transport
At1D1609_RS23905	COG2827	Endonuclease containing a URI domain
At1D1609_RS23910	COG1253	flavin adenine dinucleotide binding
At1D1609_RS23915	COG1309	transcriptional regulator
At1D1609_RS23930	COG1609	Transcriptional regulator
At1D1609_RS23935	COG1070	Carbohydrate kinase
At1D1609_RS23945	COG2115	Belongs to the xylose isomerase family
At1D1609_RS23970	COG0778	Nitroreductase
At1D1609_RS23975	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
At1D1609_RS23980	COG2011	ABC-type metal ion transport system permease component
At1D1609_RS23990	COG3300	MHYT domain
At1D1609_RS23990	COG5001	Diguanylate cyclase
At1D1609_RS24000	COG1054	Belongs to the UPF0176 family
At1D1609_RS24010	COG2954	triphosphatase activity
At1D1609_RS24015	COG0800	Aldolase
At1D1609_RS24035	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
At1D1609_RS24075	COG0523	cobalamin synthesis protein
At1D1609_RS24085	COG1846	Transcriptional regulator
At1D1609_RS24090	COG1609	Transcriptional regulator
At1D1609_RS24095	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1609_RS24110	COG3718	enzyme involved in inositol metabolism
At1D1609_RS24120	COG3962	Belongs to the TPP enzyme family
At1D1609_RS24125	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_RS24145	COG0559	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS24155	COG0683	leucine binding
At1D1609_RS24170	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS24180	COG0747	negative chemotaxis
At1D1609_RS24185	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS24205	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
At1D1609_RS24210	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
At1D1609_RS24215	COG1126	abc transporter atp-binding protein
At1D1609_RS24220	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_RS24225	COG0765	amino acid transport
At1D1609_RS24230	COG0765	amino acid transport
At1D1609_RS24240	COG3485	protocatechuate 3,4-dioxygenase
At1D1609_RS24245	COG3485	protocatechuate 3,4-dioxygenase
At1D1609_RS24250	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
At1D1609_RS24260	COG0583	DNA-binding transcription factor activity
At1D1609_RS24280	COG1414	Transcriptional regulator
At1D1609_RS24290	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
At1D1609_RS24295	COG0183	Belongs to the thiolase family
At1D1609_RS24305	COG1609	Transcriptional regulator
At1D1609_RS24320	COG1082	Xylose isomerase domain protein TIM barrel
At1D1609_RS24325	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS24335	COG1609	Transcriptional regulator
At1D1609_RS24340	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS24345	COG1175	transmembrane transport
At1D1609_RS24350	COG3842	ATPase activity
At1D1609_RS24360	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
At1D1609_RS24380	COG2814	Major facilitator Superfamily
At1D1609_RS24385	COG4774	siderophore transport
At1D1609_RS24390	COG3712	iron ion homeostasis
At1D1609_RS24400	COG1940	carbohydrate kinase activity
At1D1609_RS24410	COG3842	ATPase activity
At1D1609_RS24415	COG4149	molybdate abc transporter
At1D1609_RS24425	COG0584	glycerophosphoryl diester phosphodiesterase
At1D1609_RS24430	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_RS24435	COG0300	oxidoreductase activity
At1D1609_RS24450	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
At1D1609_RS24475	COG3210	domain, Protein
At1D1609_RS24475	COG3210	domain, Protein
At1D1609_RS24515	COG0385	Bile acid
At1D1609_RS24520	COG0667	Aldo Keto reductase
At1D1609_RS24525	COG0583	DNA-binding transcription factor activity
At1D1609_RS24535	COG2942	2-epimerase
At1D1609_RS24540	COG1132	(ABC) transporter
At1D1609_RS24550	COG0438	transferase activity, transferring glycosyl groups
At1D1609_RS24615	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS24620	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS24625	COG1120	ATPase activity
At1D1609_RS24630	COG4774	siderophore transport
At1D1609_RS24635	COG0210	DNA helicase
At1D1609_RS24640	COG4608	Belongs to the ABC transporter superfamily
At1D1609_RS24645	COG0444	Belongs to the ABC transporter superfamily
At1D1609_RS24650	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS24655	COG0601	transmembrane transport
At1D1609_RS24660	COG2186	Transcriptional regulator
At1D1609_RS24680	COG3300	MHYT domain
At1D1609_RS24680	COG5001	Diguanylate cyclase
At1D1609_RS24685	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS24695	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
At1D1609_RS24705	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
At1D1609_RS24710	COG0306	phosphate transporter
At1D1609_RS24715	COG1392	Phosphate transport regulator
At1D1609_RS24730	COG1566	PFAM secretion protein HlyD family protein
At1D1609_RS24740	COG2205	protein histidine kinase activity
At1D1609_RS24755	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
At1D1609_RS24765	COG4774	siderophore transport
At1D1609_RS24775	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS24780	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D1609_RS24785	COG1120	ATPase activity
At1D1609_RS24830	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS24845	COG3119	arylsulfatase activity
At1D1609_RS24865	COG4423	Transcription factor
At1D1609_RS24890	COG1486	melibiose metabolic process
At1D1609_RS24895	COG0747	negative chemotaxis
At1D1609_RS24900	COG0601	transmembrane transport
At1D1609_RS24905	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS24910	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS24915	COG1486	melibiose metabolic process
At1D1609_RS24920	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_RS24925	COG1129	ABC transporter
At1D1609_RS24925	COG0842	Transport permease protein
At1D1609_RS24930	COG0842	Transport permease protein
At1D1609_RS24945	COG0784	Response regulator, receiver
At1D1609_RS24950	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D1609_RS24960	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_RS24965	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D1609_RS24985	COG0765	amino acid transport
At1D1609_RS24995	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS25005	COG3938	Belongs to the proline racemase family
At1D1609_RS25020	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_RS25025	COG0765	amino acid transport
At1D1609_RS25030	COG0765	amino acid transport
At1D1609_RS25040	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D1609_RS25060	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1609_RS25080	COG3383	formate dehydrogenase (NAD+) activity
At1D1609_RS25090	COG2223	nitrite transmembrane transporter activity
At1D1609_RS25095	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_RS25110	COG0747	negative chemotaxis
At1D1609_RS25115	COG0601	transmembrane transport
At1D1609_RS25120	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS25125	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS25130	COG4948	Mandelate Racemase Muconate Lactonizing
At1D1609_RS25140	COG2186	Transcriptional regulator
At1D1609_RS25145	COG0747	negative chemotaxis
At1D1609_RS25150	COG0601	transmembrane transport
At1D1609_RS25155	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS25160	COG0405	Gamma-glutamyltransferase
At1D1609_RS25170	COG0483	inositol monophosphate 1-phosphatase activity
At1D1609_RS25180	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
At1D1609_RS25185	COG0395	ABC-type sugar transport system, permease component
At1D1609_RS25205	COG3237	CsbD-like
At1D1609_RS25220	COG3181	Tripartite tricarboxylate transporter family receptor
At1D1609_RS25225	COG5265	(ABC) transporter
At1D1609_RS25230	COG0488	(ABC) transporter
At1D1609_RS25255	COG1049	propionate catabolic process, 2-methylcitrate cycle
At1D1609_RS25260	COG0110	maltose O-acetyltransferase activity
At1D1609_RS25280	COG1129	ABC transporter
At1D1609_RS25285	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS25290	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS25305	COG1082	Xylose isomerase domain protein TIM barrel
At1D1609_RS25315	COG1126	abc transporter atp-binding protein
At1D1609_RS25320	COG0765	amino acid transport
At1D1609_RS25325	COG0765	amino acid transport
At1D1609_RS25330	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_RS25335	COG3608	succinylglutamate desuccinylase aspartoacylase
At1D1609_RS25340	COG0006	proline dipeptidase activity
At1D1609_RS25345	COG2423	ornithine cyclodeaminase activity
At1D1609_RS25350	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
At1D1609_RS25355	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D1609_RS25360	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D1609_RS25365	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS25370	COG1522	sequence-specific DNA binding
At1D1609_RS25375	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
At1D1609_RS25380	COG2814	Major facilitator Superfamily
At1D1609_RS25390	COG4178	(ABC) transporter
At1D1609_RS25420	COG0640	Transcriptional regulator
At1D1609_RS25515	COG1309	transcriptional regulator
At1D1609_RS25565	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_RS25570	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS25585	COG5564	TIM-barrel signal transduction protein
At1D1609_RS25585	COG2204	response regulator
At1D1609_RS25600	COG5564	TIM-barrel signal transduction protein
At1D1609_RS25605	COG1053	succinate dehydrogenase
At1D1609_RS25625	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
At1D1609_RS25630	COG0626	cystathionine gamma-synthase activity
At1D1609_RS25655	COG4598	ABC transporter
At1D1609_RS25660	COG0583	DNA-binding transcription factor activity
At1D1609_RS25670	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
At1D1609_RS25685	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS25695	COG1126	abc transporter atp-binding protein
At1D1609_RS25710	COG0765	amino acid transport
At1D1609_RS25730	COG0583	DNA-binding transcription factor activity
At1D1609_RS25740	COG0626	cystathionine gamma-synthase activity
At1D1609_RS25755	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D1609_RS25775	COG1473	amidohydrolase
At1D1609_RS25780	COG0626	cystathionine gamma-synthase activity
At1D1609_RS25800	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_RS25830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_RS25845	COG1129	ABC transporter
At1D1609_RS25850	COG4211	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS25855	COG1082	Xylose isomerase domain protein TIM barrel
At1D1609_RS25860	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS25870	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D1609_RS25875	COG3962	Belongs to the TPP enzyme family
At1D1609_RS25885	COG3718	enzyme involved in inositol metabolism
At1D1609_RS25890	COG1942	4-Oxalocrotonate Tautomerase
At1D1609_RS25895	COG1737	Transcriptional regulator
At1D1609_RS25905	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS25915	COG0673	inositol 2-dehydrogenase activity
At1D1609_RS25920	COG1609	Transcriptional regulator
At1D1609_RS25925	COG0583	DNA-binding transcription factor activity
At1D1609_RS25930	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS25935	COG3959	Transketolase, thiamine diphosphate binding domain
At1D1609_RS25940	COG3958	Transketolase
At1D1609_RS25945	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS25950	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS25955	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D1609_RS25960	COG1129	ABC transporter
At1D1609_RS25965	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D1609_RS25970	COG1879	ABC-type sugar transport system periplasmic component
At1D1609_RS25975	COG3618	amidohydrolase
At1D1609_RS26000	COG0247	lactate metabolic process
At1D1609_RS26000	COG0277	FAD linked oxidase domain protein
At1D1609_RS26010	COG2814	Major facilitator Superfamily
At1D1609_RS26135	COG0583	DNA-binding transcription factor activity
At1D1609_RS26145	COG1609	Transcriptional regulator
At1D1609_RS26180	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
At1D1609_RS26195	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
At1D1609_RS26200	COG0583	DNA-binding transcription factor activity
At1D1609_RS26250	COG0406	alpha-ribazole phosphatase activity
At1D1609_RS26310	COG3209	COG3209 Rhs family protein
At1D1609_RS26310	COG4104	PAAR repeat-containing protein
At1D1609_RS26335	COG4974	Belongs to the 'phage' integrase family
At1D1609_RS26365	COG1132	(ABC) transporter
At1D1609_RS26410	COG0456	acetyltransferase
At1D1609_RS26410	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
At1D1609_RS26435	COG1192	Involved in chromosome partitioning
At1D1609_RS26440	COG1475	DNA binding
At1D1609_RS26445	COG0640	Transcriptional regulator
At1D1609_RS26480	COG4644	lycopene metabolic process
At1D1609_RS26570	COG4372	Transposase
At1D1609_RS26575	COG3436	PFAM IS66 Orf2 family protein
At1D1609_RS26580	COG2963	transposase activity
At1D1609_RS26585	COG3547	Transposase (IS116 IS110 IS902 family)
At1D1609_RS26600	COG4974	Belongs to the 'phage' integrase family
At1D1609_RS26605	COG4974	Belongs to the 'phage' integrase family
At1D1609_RS26610	COG4974	Belongs to the 'phage' integrase family
At1D1609_RS26680	COG1278	Cold shock
At1D1609_RS26720	COG0546	phosphoglycolate phosphatase activity
At1D1609_RS26840	COG2222	sugar isomerase
At1D1609_RS26850	COG0006	proline dipeptidase activity
At1D1609_RS26945	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS26950	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS26955	COG0601	transmembrane transport
At1D1609_RS27035	COG1177	transmembrane transport
At1D1609_RS27040	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_RS27055	COG2972	Histidine kinase
At1D1609_RS27055	COG0840	transmembrane signaling receptor activity
At1D1609_RS27070	COG3842	ATPase activity
At1D1609_RS27075	COG0006	proline dipeptidase activity
At1D1609_RS27095	COG0300	oxidoreductase activity
At1D1609_RS27100	COG0129	dihydroxy-acid dehydratase activity
At1D1609_RS27105	COG0667	Aldo Keto reductase
At1D1609_RS27115	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS27125	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS27130	COG0601	transmembrane transport
At1D1609_RS27135	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS27140	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS27180	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D1609_RS27185	COG4172	Belongs to the ABC transporter superfamily
At1D1609_RS27210	COG3701	Conjugal transfer protein
At1D1609_RS27215	COG3846	protein secretion by the type IV secretion system
At1D1609_RS27225	COG5314	conjugation
At1D1609_RS27230	COG3451	type IV secretory pathway VirB4
At1D1609_RS27245	COG4962	Type ii secretion system protein e
At1D1609_RS27255	COG1192	Involved in chromosome partitioning
At1D1609_RS27260	COG1475	DNA binding
At1D1609_RS27265	COG1414	Transcriptional regulator
At1D1609_RS27270	COG2963	transposase activity
At1D1609_RS27285	COG5001	Diguanylate cyclase
At1D1609_RS27285	COG4251	negative regulation of phosphorylation
At1D1609_RS27285	COG2203	Gaf domain
At1D1609_RS27285	COG3706	GGDEF domain
At1D1609_RS27305	COG1278	Cold shock
At1D1609_RS27380	COG0840	transmembrane signaling receptor activity
At1D1609_RS27390	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
At1D1609_RS27405	COG1175	transmembrane transport
At1D1609_RS27415	COG3842	ATPase activity
At1D1609_RS27425	COG2390	Transcriptional regulator
At1D1609_RS27465	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
At1D1609_RS27470	COG0583	DNA-binding transcription factor activity
At1D1609_RS27475	COG0346	lactoylglutathione lyase activity
At1D1609_RS27490	COG1574	metal-dependent hydrolase with the TIM-barrel fold
At1D1609_RS27530	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS27535	COG1028	Short-chain dehydrogenase reductase Sdr
At1D1609_RS27540	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D1609_RS27560	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
At1D1609_RS27565	COG2086	electron transfer activity
At1D1609_RS27570	COG1396	sequence-specific DNA binding
At1D1609_RS27580	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
At1D1609_RS27595	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1609_RS27605	COG0583	DNA-binding transcription factor activity
At1D1609_RS27615	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
At1D1609_RS27620	COG4638	Rieske (2fe-2S)
At1D1609_RS27675	COG4175	Glycine betaine
At1D1609_RS27675	COG3448	diguanylate cyclase activity
At1D1609_RS27680	COG4176	ABC-type proline glycine betaine transport system permease component
At1D1609_RS27700	COG1902	pentaerythritol trinitrate reductase activity
At1D1609_RS27700	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D1609_RS27710	COG2086	electron transfer activity
At1D1609_RS27715	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
At1D1609_RS27720	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
At1D1609_RS27725	COG3791	Glutathione-dependent formaldehyde-activating
At1D1609_RS27735	COG4521	taurine ABC transporter
At1D1609_RS27740	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D1609_RS27750	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D1609_RS27760	COG0583	DNA-binding transcription factor activity
At1D1609_RS27770	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
At1D1609_RS27790	COG3485	protocatechuate 3,4-dioxygenase
At1D1609_RS27815	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D1609_RS27820	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS27830	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D1609_RS27860	COG3485	protocatechuate 3,4-dioxygenase
At1D1609_RS27870	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
At1D1609_RS27880	COG3246	L-lysine catabolic process to acetate
At1D1609_RS27900	COG1802	Transcriptional regulator
At1D1609_RS27935	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D1609_RS27965	COG2207	Transcriptional regulator
At1D1609_RS27970	COG0765	amino acid transport
At1D1609_RS27995	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
At1D1609_RS28005	COG0765	amino acid transport
At1D1609_RS28010	COG0765	amino acid transport
At1D1609_RS28015	COG1126	abc transporter atp-binding protein
At1D1609_RS28030	COG1473	amidohydrolase
At1D1609_RS28035	COG0583	DNA-binding transcription factor activity
At1D1609_RS28045	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS28080	COG1475	DNA binding
At1D1609_RS28115	COG5489	Protein of unknown function (DUF736)
At1D1609_RS28120	COG3831	ATPase activity
At1D1609_RS28125	COG3505	Type IV secretory pathway VirD4
At1D1609_RS28140	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1609_RS28150	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1609_RS28185	COG2771	luxR family
At1D1609_RS28190	COG2948	multi-organism process
At1D1609_RS28200	COG3504	Conjugal transfer protein
At1D1609_RS28205	COG3701	Conjugal transfer protein
At1D1609_RS28210	COG3846	protein secretion by the type IV secretion system
At1D1609_RS28220	COG5314	conjugation
At1D1609_RS28225	COG3451	type IV secretory pathway VirB4
At1D1609_RS28230	COG5268	conjugation
At1D1609_RS28235	COG3838	Conjugal transfer protein Trbc
At1D1609_RS28240	COG4962	Type ii secretion system protein e
At1D1609_RS28245	COG3916	Acyl-homoserine-lactone synthase
At1D1609_RS28255	COG4644	lycopene metabolic process
At1D1609_RS28390	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
At1D1609_RS28405	COG0840	transmembrane signaling receptor activity
At1D1609_RS28455	COG3706	GGDEF domain
At1D1609_RS28460	COG1192	Involved in chromosome partitioning
At1D1609_RS28465	COG1475	DNA binding
At1D1609_RS28470	COG0640	Transcriptional regulator
At1D1609_RS28515	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
At1D1609_RS28550	COG4644	lycopene metabolic process
At1D1609_RS28690	COG1475	DNA binding
At1D1609_RS28735	COG1802	Transcriptional regulator
At1D1609_RS28740	COG3842	ATPase activity
At1D1609_RS28760	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D1609_RS28765	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D1609_RS28775	COG1250	3-hydroxyacyl-CoA dehydrogenase
At1D1609_RS28790	COG0835	chemotaxis
At1D1609_RS28815	COG5489	Protein of unknown function (DUF736)
At1D1609_RS28840	COG4372	Transposase
At1D1609_RS28845	COG3436	PFAM IS66 Orf2 family protein
At1D1609_RS28855	COG3547	Transposase (IS116 IS110 IS902 family)
At1D1609_RS28870	COG4644	lycopene metabolic process
At1D1609_RS28915	COG0583	DNA-binding transcription factor activity
At1D1609_RS28930	COG1177	transmembrane transport
At1D1609_RS28935	COG3842	ATPase activity
At1D1609_RS28945	COG0156	8-amino-7-oxononanoate synthase activity
At1D1609_RS28950	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D1609_RS28970	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
At1D1609_RS28975	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D1609_RS28990	COG1175	transmembrane transport
At1D1609_RS29015	COG0840	transmembrane signaling receptor activity
At1D1609_RS29020	COG0835	chemotaxis
At1D1609_RS29045	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D1609_RS29055	COG0477	Major facilitator Superfamily
At1D1609_RS29060	COG1012	belongs to the aldehyde dehydrogenase family
At1D1609_RS29065	COG0583	DNA-binding transcription factor activity
At1D1609_RS29075	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
At1D1609_RS29095	COG4977	sequence-specific DNA binding
At1D1609_RS29100	COG1335	isochorismatase
At1D1609_RS29105	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
At1D1609_RS29155	COG1475	DNA binding
At1D1609_RS29170	COG5489	Protein of unknown function (DUF736)
At1D1609_RS29185	COG1525	nuclease
At1D1609_RS29190	COG3831	ATPase activity
At1D1609_RS29200	COG3505	Type IV secretory pathway VirD4
At1D1609_RS29215	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D1609_RS29220	COG4959	Type IV secretory pathway protease TraF
At1D1609_RS29225	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D1609_RS29235	COG3177	Filamentation induced by cAMP protein fic
At1D1609_RS29240	COG1476	TRANSCRIPTIONal
At1D1609_RS29250	COG2771	luxR family
At1D1609_RS29255	COG2948	multi-organism process
At1D1609_RS29265	COG3504	Conjugal transfer protein
At1D1609_RS29270	COG3701	Conjugal transfer protein
At1D1609_RS29275	COG3846	protein secretion by the type IV secretion system
At1D1609_RS29285	COG5314	conjugation
At1D1609_RS29290	COG3451	type IV secretory pathway VirB4
At1D1609_RS29295	COG5268	conjugation
At1D1609_RS29300	COG3838	Conjugal transfer protein Trbc
At1D1609_RS29305	COG4962	Type ii secretion system protein e
At1D1609_RS29310	COG3916	Acyl-homoserine-lactone synthase