ATC03_RS00005	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
ATC03_RS00010	SM00480	DNA polymerase III beta subunit
ATC03_RS00025	SM00387	Histidine kinase-like ATPases
ATC03_RS00025	SM00433	TopoisomeraseII
ATC03_RS00030	SM00434	DNA Topoisomerase IV
ATC03_RS00090	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_RS00090	SM00740	ATC03_RS00090
ATC03_RS00095	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_RS00110	SM00331	Sigma factor PP2C-like phosphatases
ATC03_RS00110	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC03_RS00115	SM00240	Forkhead associated domain
ATC03_RS00120	SM00240	Forkhead associated domain
ATC03_RS00175	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS00235	SM00872	Alpha mannosidase, middle domain
ATC03_RS00260	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS00275	SM00829	Enoylreductase
ATC03_RS00280	SM01006	Siderophore biosynthesis protein domain
ATC03_RS00295	SM01006	Siderophore biosynthesis protein domain
ATC03_RS00365	SM00478	endonuclease III
ATC03_RS00390	SM00155	Phospholipase D. Active site motifs.
ATC03_RS00400	SM00477	DNA/RNA non-specific endonuclease
ATC03_RS00400	SM00892	DNA/RNA non-specific endonuclease
ATC03_RS00420	SM00849	Metallo-beta-lactamase superfamily
ATC03_RS00425	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS00425	SM00871	Bacterial transcription activator, effector binding domain
ATC03_RS00435	SM00974	ATC03_RS00435
ATC03_RS00485	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS00495	SM00257	Lysin motif
ATC03_RS00500	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS00530	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS00570	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS00595	SM00327	von Willebrand factor (vWF) type A domain
ATC03_RS00690	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS00720	SM01004	Delta-aminolevulinic acid dehydratase
ATC03_RS00740	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_RS00765	SM00240	Forkhead associated domain
ATC03_RS00770	SM00331	Sigma factor PP2C-like phosphatases
ATC03_RS00770	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC03_RS00795	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS00825	SM00450	Rhodanese Homology Domain
ATC03_RS00830	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS00845	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS00845	SM00895	ATC03_RS00845
ATC03_RS00910	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC03_RS00955	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS00960	SM00344	helix_turn_helix ASNC type
ATC03_RS00995	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS01035	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS01075	SM00014	Acid phosphatase homologues
ATC03_RS01080	SM01217	ATC03_RS01080
ATC03_RS01095	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS01095	SM00895	ATC03_RS01095
ATC03_RS01115	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS01175	SM01007	Class II Aldolase and Adducin N-terminal domain
ATC03_RS01210	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS01215	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS01220	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS01225	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATC03_RS01235	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS01250	SM00460	Transglutaminase/protease-like homologues
ATC03_RS01255	SM00776	ATC03_RS01255
ATC03_RS01265	SM00855	Phosphoglycerate mutase family
ATC03_RS01290	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS01350	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC03_RS01395	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
ATC03_RS01430	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS01435	SM00642	Alpha-amylase domain
ATC03_RS01455	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS01465	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS01480	SM01260	ATC03_RS01480
ATC03_RS01490	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS01530	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS01535	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS01575	SM00448	cheY-homologous receiver domain
ATC03_RS01575	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS01580	SM00387	Histidine kinase-like ATPases
ATC03_RS01580	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_RS01635	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS01675	SM00855	Phosphoglycerate mutase family
ATC03_RS01700	SM00632	ATC03_RS01700
ATC03_RS01700	SM00642	Alpha-amylase domain
ATC03_RS01700	SM01066	Carbohydrate binding domain
ATC03_RS01705	SM00642	Alpha-amylase domain
ATC03_RS01715	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_RS01720	SM01018	B12 binding domain
ATC03_RS01735	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS01820	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS01850	SM00422	helix_turn_helix, mercury resistance
ATC03_RS01855	SM00642	Alpha-amylase domain
ATC03_RS01875	SM00642	Alpha-amylase domain
ATC03_RS01890	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS01905	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS01990	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS01990	SM01043	Bacterial transcriptional activator domain
ATC03_RS02020	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS02090	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS02105	SM00226	Low molecular weight phosphatase family
ATC03_RS02115	SM00226	Low molecular weight phosphatase family
ATC03_RS02120	SM00226	Low molecular weight phosphatase family
ATC03_RS02160	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS02205	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATC03_RS02235	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS02240	SM01007	Class II Aldolase and Adducin N-terminal domain
ATC03_RS02265	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS02275	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC03_RS02340	SM00487	DEAD-like helicases superfamily
ATC03_RS02340	SM00490	helicase superfamily c-terminal domain
ATC03_RS02380	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS02385	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_RS02505	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS02595	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC03_RS02625	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS02645	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATC03_RS02725	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS02725	SM00448	cheY-homologous receiver domain
ATC03_RS02730	SM00014	Acid phosphatase homologues
ATC03_RS02730	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC03_RS02755	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS02810	SM00635	Bacterial Ig-like domain 2
ATC03_RS02825	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC03_RS02845	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ATC03_RS02845	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ATC03_RS02850	SM00649	Ribosomal protein L11/L12
ATC03_RS02890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS02915	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_RS02925	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS03000	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS03060	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS03110	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS03140	SM00829	Enoylreductase
ATC03_RS03165	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS03220	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS03235	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ATC03_RS03235	SM00606	Cellulose Binding Domain Type IV
ATC03_RS03240	SM00448	cheY-homologous receiver domain
ATC03_RS03240	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS03245	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_RS03245	SM00387	Histidine kinase-like ATPases
ATC03_RS03245	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_RS03255	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ATC03_RS03255	SM00606	Cellulose Binding Domain Type IV
ATC03_RS03270	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS03325	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS03345	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS03355	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS03375	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS03385	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC03_RS03415	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS03420	SM01007	Class II Aldolase and Adducin N-terminal domain
ATC03_RS03430	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS03460	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS03460	SM00448	cheY-homologous receiver domain
ATC03_RS03495	SM00495	Chitin-binding domain type 3
ATC03_RS03495	SM00636	ATC03_RS03495
ATC03_RS03500	SM00829	Enoylreductase
ATC03_RS03510	SM00776	ATC03_RS03510
ATC03_RS03515	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS03525	SM00606	Cellulose Binding Domain Type IV
ATC03_RS03570	SM00828	Methyltransferase  in polyketide synthase (PKS) enzymes.
ATC03_RS03600	SM00560	LamG-like jellyroll fold domain
ATC03_RS03635	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS03640	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS03650	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS03670	SM00344	helix_turn_helix ASNC type
ATC03_RS03715	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS03760	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS03760	SM00448	cheY-homologous receiver domain
ATC03_RS03765	SM00387	Histidine kinase-like ATPases
ATC03_RS03775	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS03820	SM00710	Parallel beta-helix repeats
ATC03_RS03845	SM00882	Coenzyme A transferase
ATC03_RS03880	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS03895	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS03915	SM00460	Transglutaminase/protease-like homologues
ATC03_RS03925	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS03995	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS04000	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS04035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS04035	SM00895	ATC03_RS04035
ATC03_RS04075	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS04080	SM00710	Parallel beta-helix repeats
ATC03_RS04110	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS04155	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS04200	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS04230	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS04235	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS04255	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS04280	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
ATC03_RS04325	SM01022	ATC03_RS04325
ATC03_RS04395	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS04395	SM00448	cheY-homologous receiver domain
ATC03_RS04425	SM01059	Chloramphenicol acetyltransferase
ATC03_RS04440	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_RS04440	SM00387	Histidine kinase-like ATPases
ATC03_RS04440	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_RS04445	SM00448	cheY-homologous receiver domain
ATC03_RS04445	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS04490	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS04525	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS04530	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATC03_RS04530	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATC03_RS04535	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS04540	SM00640	Glycosyl hydrolases family 32
ATC03_RS04560	SM00640	Glycosyl hydrolases family 32
ATC03_RS04570	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS04585	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS04590	SM00640	Glycosyl hydrolases family 32
ATC03_RS04610	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS04615	SM00640	Glycosyl hydrolases family 32
ATC03_RS04620	SM00640	Glycosyl hydrolases family 32
ATC03_RS04635	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS04635	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC03_RS04640	SM00849	Metallo-beta-lactamase superfamily
ATC03_RS04700	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS04710	SM00098	Alkaline phosphatase homologues
ATC03_RS04730	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS04730	SM00448	cheY-homologous receiver domain
ATC03_RS04755	SM00710	Parallel beta-helix repeats
ATC03_RS04765	SM00776	ATC03_RS04765
ATC03_RS04770	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS04780	SM00060	Fibronectin type 3 domain
ATC03_RS04860	SM00855	Phosphoglycerate mutase family
ATC03_RS04920	SM00849	Metallo-beta-lactamase superfamily
ATC03_RS04950	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS04970	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS04985	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_RS04990	SM01130	ATC03_RS04990
ATC03_RS05000	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS05050	SM00812	Alpha-L-fucosidase
ATC03_RS05055	SM00100	Cyclic nucleotide-monophosphate binding domain
ATC03_RS05070	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS05085	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS05105	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS05115	SM01217	ATC03_RS05115
ATC03_RS05155	SM00014	Acid phosphatase homologues
ATC03_RS05160	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS05180	SM00813	Alpha-L-arabinofuranosidase C-terminus
ATC03_RS05190	SM01217	ATC03_RS05190
ATC03_RS05195	SM01217	ATC03_RS05195
ATC03_RS05210	SM00450	Rhodanese Homology Domain
ATC03_RS05215	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC03_RS05240	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ATC03_RS05245	SM01092	CO dehydrogenase flavoprotein C-terminal domain
ATC03_RS05250	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS05255	SM00919	Malic enzyme, NAD binding domain
ATC03_RS05255	SM01274	ATC03_RS05255
ATC03_RS05300	SM00095	Transthyretin
ATC03_RS05315	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS05330	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS05360	SM00822	ATC03_RS05360
ATC03_RS05385	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS05400	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS05405	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ATC03_RS05405	SM00493	ATC03_RS05405
ATC03_RS05430	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC03_RS05440	SM00387	Histidine kinase-like ATPases
ATC03_RS05440	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_RS05445	SM00267	diguanylate cyclase
ATC03_RS05460	SM00448	cheY-homologous receiver domain
ATC03_RS05460	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS05475	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS05485	SM01119	ATC03_RS05485
ATC03_RS05515	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS05520	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS05545	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS05550	SM00305	Hint (Hedgehog/Intein) domain C-terminal region
ATC03_RS05550	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
ATC03_RS05580	SM00226	Low molecular weight phosphatase family
ATC03_RS05655	SM00984	UDP binding domain
ATC03_RS05765	SM00823	Phosphopantetheine attachment site
ATC03_RS05765	SM01294	ATC03_RS05765
ATC03_RS05780	SM00740	ATC03_RS05780
ATC03_RS05815	SM00881	CoA binding domain
ATC03_RS05835	SM00798	AICARFT/IMPCHase bienzyme
ATC03_RS05835	SM00851	MGS-like domain
ATC03_RS05840	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ATC03_RS05850	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS05855	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS05875	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS05880	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS05895	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS05895	SM00448	cheY-homologous receiver domain
ATC03_RS05915	SM01329	ATC03_RS05915
ATC03_RS05985	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC03_RS05985	SM01134	ATC03_RS05985
ATC03_RS06095	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC03_RS06095	SM01134	ATC03_RS06095
ATC03_RS06135	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS06140	SM00495	Chitin-binding domain type 3
ATC03_RS06140	SM00636	ATC03_RS06140
ATC03_RS06145	SM00495	Chitin-binding domain type 3
ATC03_RS06145	SM00636	ATC03_RS06145
ATC03_RS06150	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS06170	SM00855	Phosphoglycerate mutase family
ATC03_RS06180	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS06205	SM00855	Phosphoglycerate mutase family
ATC03_RS06215	SM00387	Histidine kinase-like ATPases
ATC03_RS06215	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_RS06220	SM00448	cheY-homologous receiver domain
ATC03_RS06220	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS06230	SM01058	CarD-like/TRCF domain
ATC03_RS06240	SM00840	ATC03_RS06240
ATC03_RS06245	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATC03_RS06255	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS06295	SM00357	Cold shock protein domain
ATC03_RS06315	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_RS06315	SM00387	Histidine kinase-like ATPases
ATC03_RS06315	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_RS06320	SM00448	cheY-homologous receiver domain
ATC03_RS06320	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS06340	SM00487	DEAD-like helicases superfamily
ATC03_RS06340	SM00490	helicase superfamily c-terminal domain
ATC03_RS06355	SM00357	Cold shock protein domain
ATC03_RS06375	SM00529	Helix-turn-helix diphteria tox regulatory element
ATC03_RS06385	SM00507	HNH nucleases
ATC03_RS06420	SM00344	helix_turn_helix ASNC type
ATC03_RS06425	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATC03_RS06425	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATC03_RS06430	SM00450	Rhodanese Homology Domain
ATC03_RS06445	SM00834	Putative regulatory protein
ATC03_RS06550	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS06550	SM00487	DEAD-like helicases superfamily
ATC03_RS06550	SM00490	helicase superfamily c-terminal domain
ATC03_RS06550	SM00847	Helicase associated domain (HA2)  Add an annotation
ATC03_RS06565	SM00506	Appr-1"-p processing enzyme
ATC03_RS06600	SM00271	DnaJ molecular chaperone homology domain
ATC03_RS06610	SM00450	Rhodanese Homology Domain
ATC03_RS06620	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS06630	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS06630	SM01043	Bacterial transcriptional activator domain
ATC03_RS06655	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS06670	SM00881	CoA binding domain
ATC03_RS06695	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS06700	SM00829	Enoylreductase
ATC03_RS06730	SM00829	Enoylreductase
ATC03_RS06745	SM00650	Ribosomal RNA adenine dimethylases
ATC03_RS06755	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS06765	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS06765	SM00930	ATC03_RS06765
ATC03_RS06780	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS06795	SM01400	ATC03_RS06795
ATC03_RS06825	SM01350	ATC03_RS06825
ATC03_RS06840	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS06860	SM00829	Enoylreductase
ATC03_RS06885	SM00487	DEAD-like helicases superfamily
ATC03_RS06885	SM00490	helicase superfamily c-terminal domain
ATC03_RS06885	SM00982	ATC03_RS06885
ATC03_RS06885	SM01058	CarD-like/TRCF domain
ATC03_RS06915	SM01192	ATC03_RS06915
ATC03_RS06915	SM01193	ATC03_RS06915
ATC03_RS06945	SM00831	Cation transporter/ATPase, N-terminus
ATC03_RS06990	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS07050	SM00670	Large family of predicted nucleotide-binding domains
ATC03_RS07065	SM00947	Carbonic anhydrase
ATC03_RS07135	SM00479	ATC03_RS07135
ATC03_RS07190	SM00563	Phosphate acyltransferases
ATC03_RS07205	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS07220	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC03_RS07220	SM01232	ATC03_RS07220
ATC03_RS07235	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC03_RS07235	SM01232	ATC03_RS07235
ATC03_RS07265	SM00327	von Willebrand factor (vWF) type A domain
ATC03_RS07340	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS07450	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC03_RS07450	SM00924	MgtE intracellular N domain
ATC03_RS07465	SM01011	Aminopeptidase P, N-terminal domain
ATC03_RS07475	SM00481	DNA polymerase alpha chain like domain
ATC03_RS07480	SM00487	DEAD-like helicases superfamily
ATC03_RS07480	SM00490	helicase superfamily c-terminal domain
ATC03_RS07530	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATC03_RS07540	SM00636	ATC03_RS07540
ATC03_RS07625	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATC03_RS07655	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS07675	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS07770	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS07825	SM00937	ATC03_RS07825
ATC03_RS07845	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS07885	SM00637	ATC03_RS07885
ATC03_RS07985	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATC03_RS07985	SM00475	5'-3' exonuclease
ATC03_RS08005	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS08125	SM01329	ATC03_RS08125
ATC03_RS08180	SM00849	Metallo-beta-lactamase superfamily
ATC03_RS08185	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC03_RS08210	SM00331	Sigma factor PP2C-like phosphatases
ATC03_RS08210	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC03_RS08220	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_RS08230	SM00060	Fibronectin type 3 domain
ATC03_RS08245	SM00460	Transglutaminase/protease-like homologues
ATC03_RS08270	SM00563	Phosphate acyltransferases
ATC03_RS08290	SM00327	von Willebrand factor (vWF) type A domain
ATC03_RS08310	SM00487	DEAD-like helicases superfamily
ATC03_RS08310	SM00490	helicase superfamily c-terminal domain
ATC03_RS08330	SM00460	Transglutaminase/protease-like homologues
ATC03_RS08345	SM00358	Double-stranded RNA binding motif
ATC03_RS08345	SM00535	Ribonuclease III family
ATC03_RS08350	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC03_RS08350	SM01232	ATC03_RS08350
ATC03_RS08360	SM00968	SMC proteins Flexible Hinge Domain
ATC03_RS08365	SM00642	Alpha-amylase domain
ATC03_RS08375	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS08375	SM00962	SRP54-type protein, GTPase domain
ATC03_RS08375	SM00963	SRP54-type protein, helical bundle domain
ATC03_RS08385	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS08385	SM00962	SRP54-type protein, GTPase domain
ATC03_RS08385	SM00963	SRP54-type protein, helical bundle domain
ATC03_RS08435	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ATC03_RS08445	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS08500	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS08590	SM00642	Alpha-amylase domain
ATC03_RS08595	SM00642	Alpha-amylase domain
ATC03_RS08610	SM00642	Alpha-amylase domain
ATC03_RS08635	SM00292	breast cancer carboxy-terminal domain
ATC03_RS08635	SM00532	Ligase N family
ATC03_RS08655	SM00845	GatB domain
ATC03_RS08680	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS08705	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS08710	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS08720	SM01040	BRO family, N-terminal domain
ATC03_RS09005	SM00479	ATC03_RS09005
ATC03_RS09045	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS09095	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS09095	SM00448	cheY-homologous receiver domain
ATC03_RS09110	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS09135	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC03_RS09135	SM01232	ATC03_RS09135
ATC03_RS09155	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS09155	SM00448	cheY-homologous receiver domain
ATC03_RS09200	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS09205	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS09205	SM00994	ClpX C4-type zinc finger
ATC03_RS09205	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC03_RS09250	SM00861	Transketolase, pyrimidine binding domain
ATC03_RS09265	SM00341	Helicase and RNase D C-terminal
ATC03_RS09265	SM00474	3'-5' exonuclease
ATC03_RS09285	SM00450	Rhodanese Homology Domain
ATC03_RS09330	SM00710	Parallel beta-helix repeats
ATC03_RS09335	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATC03_RS09350	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS09385	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS09390	SM01323	ATC03_RS09390
ATC03_RS09405	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC03_RS09405	SM00954	Region found in RelA / SpoT proteins
ATC03_RS09425	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS09430	SM00363	S4 RNA-binding domain
ATC03_RS09430	SM01390	ATC03_RS09430
ATC03_RS09440	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ATC03_RS09445	SM00732	Likely ribonuclease with RNase H fold.
ATC03_RS09480	SM00841	Elongation factor P, C-terminal
ATC03_RS09480	SM01185	ATC03_RS09480
ATC03_RS09520	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ATC03_RS09525	SM00851	MGS-like domain
ATC03_RS09525	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ATC03_RS09530	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATC03_RS09535	SM00072	Guanylate kinase homologues.
ATC03_RS09540	SM01409	ATC03_RS09540
ATC03_RS09655	SM00448	cheY-homologous receiver domain
ATC03_RS09655	SM01012	ATC03_RS09655
ATC03_RS09660	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ATC03_RS09660	SM00475	5'-3' exonuclease
ATC03_RS09660	SM00482	DNA polymerase A domain
ATC03_RS09670	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC03_RS09680	SM00487	DEAD-like helicases superfamily
ATC03_RS09680	SM00490	helicase superfamily c-terminal domain
ATC03_RS09690	SM00465	GIY-YIG type nucleases (URI domain)
ATC03_RS09710	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATC03_RS09760	SM00861	Transketolase, pyrimidine binding domain
ATC03_RS09795	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS09825	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS09870	SM00562	ATC03_RS09870
ATC03_RS09875	SM00756	ATC03_RS09875
ATC03_RS09880	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC03_RS09950	SM00344	helix_turn_helix ASNC type
ATC03_RS09970	SM00867	YceI-like domain 
ATC03_RS09980	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS10000	SM00822	ATC03_RS10000
ATC03_RS10020	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS10030	SM00479	ATC03_RS10030
ATC03_RS10045	SM00855	Phosphoglycerate mutase family
ATC03_RS10070	SM00487	DEAD-like helicases superfamily
ATC03_RS10080	SM00344	helix_turn_helix ASNC type
ATC03_RS10100	SM00481	DNA polymerase alpha chain like domain
ATC03_RS10170	SM00487	DEAD-like helicases superfamily
ATC03_RS10170	SM00490	helicase superfamily c-terminal domain
ATC03_RS10170	SM01142	ATC03_RS10170
ATC03_RS10190	SM00244	prohibitin homologues
ATC03_RS10210	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS10220	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS10225	SM00226	Low molecular weight phosphatase family
ATC03_RS10230	SM00226	Low molecular weight phosphatase family
ATC03_RS10245	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS10270	SM00822	ATC03_RS10270
ATC03_RS10280	SM01120	ATC03_RS10280
ATC03_RS10365	SM00434	DNA Topoisomerase IV
ATC03_RS10370	SM00387	Histidine kinase-like ATPases
ATC03_RS10370	SM00433	TopoisomeraseII
ATC03_RS10425	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC03_RS10440	SM01230	ATC03_RS10440
ATC03_RS10450	SM01230	ATC03_RS10450
ATC03_RS10510	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ATC03_RS10525	SM00825	Beta-ketoacyl synthase
ATC03_RS10540	SM00482	DNA polymerase A domain
ATC03_RS10555	SM00244	prohibitin homologues
ATC03_RS10560	SM00867	YceI-like domain 
ATC03_RS10685	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS10695	SM00882	Coenzyme A transferase
ATC03_RS10700	SM00882	Coenzyme A transferase
ATC03_RS10730	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS10775	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS10785	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ATC03_RS10810	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS10815	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS10830	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS10835	SM01217	ATC03_RS10835
ATC03_RS10860	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS10870	SM00327	von Willebrand factor (vWF) type A domain
ATC03_RS10900	SM00835	Cupin
ATC03_RS10905	SM00829	Enoylreductase
ATC03_RS10935	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS10975	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS10980	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS10990	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS11055	SM01217	ATC03_RS11055
ATC03_RS11085	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_RS11105	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS11210	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS11215	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS11235	SM00400	zinc finger
ATC03_RS11235	SM00493	ATC03_RS11235
ATC03_RS11240	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC03_RS11295	SM00917	LeuA allosteric (dimerisation) domain
ATC03_RS11305	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS11310	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS11310	SM00448	cheY-homologous receiver domain
ATC03_RS11325	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC03_RS11325	SM01091	Transporter associated domain
ATC03_RS11350	SM00271	DnaJ molecular chaperone homology domain
ATC03_RS11370	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC03_RS11380	SM00838	Elongation factor G C-terminus
ATC03_RS11385	SM00387	Histidine kinase-like ATPases
ATC03_RS11390	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS11390	SM00448	cheY-homologous receiver domain
ATC03_RS11405	SM00849	Metallo-beta-lactamase superfamily
ATC03_RS11425	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS11430	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS11475	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS11505	SM00481	DNA polymerase alpha chain like domain
ATC03_RS11540	SM00864	Tubulin/FtsZ family, GTPase domain
ATC03_RS11540	SM00865	Tubulin/FtsZ family, C-terminal domain
ATC03_RS11620	SM00257	Lysin motif
ATC03_RS11625	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_RS11625	SM00740	ATC03_RS11625
ATC03_RS11635	SM00563	Phosphate acyltransferases
ATC03_RS11660	SM00878	Biotin carboxylase C-terminal domain
ATC03_RS11670	SM00422	helix_turn_helix, mercury resistance
ATC03_RS11675	SM00422	helix_turn_helix, mercury resistance
ATC03_RS11680	SM00240	Forkhead associated domain
ATC03_RS11700	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS11740	SM00363	S4 RNA-binding domain
ATC03_RS11760	SM00849	Metallo-beta-lactamase superfamily
ATC03_RS11765	SM00954	Region found in RelA / SpoT proteins
ATC03_RS11770	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS11790	SM00563	Phosphate acyltransferases
ATC03_RS11820	SM00903	Flavin reductase like domain
ATC03_RS11865	SM00344	helix_turn_helix ASNC type
ATC03_RS11885	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_RS11885	SM00387	Histidine kinase-like ATPases
ATC03_RS11885	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_RS11890	SM00448	cheY-homologous receiver domain
ATC03_RS11890	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS11915	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS11925	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ATC03_RS11930	SM00996	S-adenosyl-L-homocysteine hydrolase
ATC03_RS11930	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ATC03_RS11935	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATC03_RS11935	SM00267	diguanylate cyclase
ATC03_RS11940	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS12015	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS12050	SM00422	helix_turn_helix, mercury resistance
ATC03_RS12185	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS12230	SM00942	Primase C terminal 1 (PriCT-1)
ATC03_RS12230	SM00943	Bifunctional DNA primase/polymerase, N-terminal
ATC03_RS12245	SM00470	ParB-like nuclease domain
ATC03_RS12335	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS12345	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS12360	SM00363	S4 RNA-binding domain
ATC03_RS12405	SM00363	S4 RNA-binding domain
ATC03_RS12480	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ATC03_RS12485	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS12520	SM00873	B3/4 domain
ATC03_RS12520	SM00874	tRNA synthetase B5 domain
ATC03_RS12520	SM00896	Ferredoxin-fold anticodon binding domain
ATC03_RS12540	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_RS12545	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS12550	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ATC03_RS12575	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
ATC03_RS12575	SM01232	ATC03_RS12575
ATC03_RS12580	SM00487	DEAD-like helicases superfamily
ATC03_RS12580	SM00490	helicase superfamily c-terminal domain
ATC03_RS12615	SM00257	Lysin motif
ATC03_RS12660	SM00729	Elongator protein 3, MiaB family, Radical SAM
ATC03_RS12670	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS12680	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS12695	SM00843	ATC03_RS12695
ATC03_RS12710	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS12720	SM00849	Metallo-beta-lactamase superfamily
ATC03_RS12725	SM01130	ATC03_RS12725
ATC03_RS12780	SM00855	Phosphoglycerate mutase family
ATC03_RS12810	SM00878	Biotin carboxylase C-terminal domain
ATC03_RS12840	SM00849	Metallo-beta-lactamase superfamily
ATC03_RS12880	SM00861	Transketolase, pyrimidine binding domain
ATC03_RS12890	SM00344	helix_turn_helix ASNC type
ATC03_RS12900	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS12915	SM00316	Ribosomal protein S1-like RNA-binding domain
ATC03_RS12915	SM00322	K homology RNA-binding domain
ATC03_RS12930	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS13025	SM00986	Uracil DNA glycosylase superfamily
ATC03_RS13025	SM00987	UreE urease accessory protein, C-terminal domain 
ATC03_RS13030	SM01387	ATC03_RS13030
ATC03_RS13095	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS13095	SM00478	endonuclease III
ATC03_RS13095	SM01009	AlkA N-terminal domain
ATC03_RS13100	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS13100	SM00895	ATC03_RS13100
ATC03_RS13110	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_RS13125	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS13130	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS13130	SM00895	ATC03_RS13130
ATC03_RS13135	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_RS13185	SM00487	DEAD-like helicases superfamily
ATC03_RS13185	SM00490	helicase superfamily c-terminal domain
ATC03_RS13235	SM01133	ATC03_RS13235
ATC03_RS13255	SM00904	Riboflavin kinase
ATC03_RS13290	SM00478	endonuclease III
ATC03_RS13290	SM00525	ATC03_RS13290
ATC03_RS13340	SM00882	Coenzyme A transferase
ATC03_RS13345	SM00882	Coenzyme A transferase
ATC03_RS13365	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS13365	SM00448	cheY-homologous receiver domain
ATC03_RS13370	SM00387	Histidine kinase-like ATPases
ATC03_RS13375	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ATC03_RS13390	SM00563	Phosphate acyltransferases
ATC03_RS13425	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS13435	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS13460	SM00060	Fibronectin type 3 domain
ATC03_RS13465	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_RS13470	SM00331	Sigma factor PP2C-like phosphatases
ATC03_RS13470	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
ATC03_RS13480	SM00344	helix_turn_helix ASNC type
ATC03_RS13525	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS13580	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS13605	SM00937	ATC03_RS13605
ATC03_RS13610	SM00357	Cold shock protein domain
ATC03_RS13610	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS13610	SM00959	Rho termination factor, N-terminal domain
ATC03_RS13640	SM00836	DALR anticodon binding domain
ATC03_RS13640	SM01016	Arginyl tRNA synthetase N terminal dom
ATC03_RS13700	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS13735	SM00986	Uracil DNA glycosylase superfamily
ATC03_RS13735	SM00987	UreE urease accessory protein, C-terminal domain 
ATC03_RS13785	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS13785	SM00448	cheY-homologous receiver domain
ATC03_RS13815	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_RS13815	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ATC03_RS13825	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS13855	SM01091	Transporter associated domain
ATC03_RS13860	SM01240	ATC03_RS13860
ATC03_RS13865	SM00861	Transketolase, pyrimidine binding domain
ATC03_RS13910	SM00387	Histidine kinase-like ATPases
ATC03_RS13910	SM00911	HWE histidine kinase
ATC03_RS13940	SM00957	SecA DEAD-like domain
ATC03_RS13940	SM00958	SecA preprotein cross-linking domain
ATC03_RS13955	SM00909	Sporulation and spore germination
ATC03_RS13960	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_RS13960	SM00387	Histidine kinase-like ATPases
ATC03_RS13960	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_RS13965	SM00448	cheY-homologous receiver domain
ATC03_RS13965	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS14010	SM00996	S-adenosyl-L-homocysteine hydrolase
ATC03_RS14010	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ATC03_RS14050	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS14245	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS14270	SM01001	AIR carboxylase
ATC03_RS14320	SM00448	cheY-homologous receiver domain
ATC03_RS14335	SM00878	Biotin carboxylase C-terminal domain
ATC03_RS14380	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
ATC03_RS14400	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS14440	SM00327	von Willebrand factor (vWF) type A domain
ATC03_RS14445	SM00327	von Willebrand factor (vWF) type A domain
ATC03_RS14550	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS14570	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS14600	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATC03_RS14655	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS14655	SM00895	ATC03_RS14655
ATC03_RS14700	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS14770	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS14810	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS14815	SM00710	Parallel beta-helix repeats
ATC03_RS14820	SM00060	Fibronectin type 3 domain
ATC03_RS14840	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS14855	SM00448	cheY-homologous receiver domain
ATC03_RS14855	SM00862	Transcriptional regulatory protein, C terminal
ATC03_RS14860	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ATC03_RS14860	SM00387	Histidine kinase-like ATPases
ATC03_RS14860	SM00388	His Kinase A (phosphoacceptor) domain
ATC03_RS14880	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ATC03_RS14900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS14900	SM00895	ATC03_RS14900
ATC03_RS14915	SM00635	Bacterial Ig-like domain 2
ATC03_RS14925	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS14955	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ATC03_RS14955	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ATC03_RS14955	SM00493	ATC03_RS14955
ATC03_RS15045	SM01240	ATC03_RS15045
ATC03_RS15050	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS15060	SM00116	Domain in cystathionine beta-synthase and other proteins.
ATC03_RS15060	SM01240	ATC03_RS15060
ATC03_RS15075	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS15080	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS15095	SM00883	Chaperonin 10 Kd subunit
ATC03_RS15140	SM01005	Alanine racemase, C-terminal domain
ATC03_RS15185	SM00662	RNA polymerases D
ATC03_RS15270	SM01374	ATC03_RS15270
ATC03_RS15290	SM00322	K homology RNA-binding domain
ATC03_RS15305	SM01382	ATC03_RS15305
ATC03_RS15305	SM01383	ATC03_RS15305
ATC03_RS15325	SM01403	ATC03_RS15325
ATC03_RS15345	SM00838	Elongation factor G C-terminus
ATC03_RS15345	SM00889	Elongation factor G, domain IV
ATC03_RS15430	SM00240	Forkhead associated domain
ATC03_RS15430	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS15455	SM00842	Cell division protein FtsA
ATC03_RS15490	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS15495	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS15500	SM00663	RNA polymerase I subunit A N-terminus
ATC03_RS15525	SM00797	Allophanate hydrolase subunit 2
ATC03_RS15530	SM00796	Allophanate hydrolase subunit 1
ATC03_RS15545	SM00731	SprT homologues.
ATC03_RS15575	SM00487	DEAD-like helicases superfamily
ATC03_RS15575	SM00490	helicase superfamily c-terminal domain
ATC03_RS15605	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS15665	SM01130	ATC03_RS15665
ATC03_RS15695	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS15695	SM00895	ATC03_RS15695
ATC03_RS15700	SM01011	Aminopeptidase P, N-terminal domain
ATC03_RS15710	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS15745	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS15770	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS15770	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC03_RS15780	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS15795	SM00631	ATC03_RS15795
ATC03_RS15800	SM00155	Phospholipase D. Active site motifs.
ATC03_RS15845	SM00905	Dihydroneopterin aldolase
ATC03_RS15860	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS15930	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS15930	SM00448	cheY-homologous receiver domain
ATC03_RS15935	SM00387	Histidine kinase-like ATPases
ATC03_RS15950	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS15985	SM00481	DNA polymerase alpha chain like domain
ATC03_RS15990	SM00829	Enoylreductase
ATC03_RS16025	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS16055	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS16100	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS16105	SM00341	Helicase and RNase D C-terminal
ATC03_RS16105	SM00487	DEAD-like helicases superfamily
ATC03_RS16105	SM00490	helicase superfamily c-terminal domain
ATC03_RS16105	SM00956	ATC03_RS16105
ATC03_RS16135	SM00487	DEAD-like helicases superfamily
ATC03_RS16135	SM00490	helicase superfamily c-terminal domain
ATC03_RS16185	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS16195	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS16220	SM00357	Cold shock protein domain
ATC03_RS16240	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ATC03_RS16260	SM00357	Cold shock protein domain
ATC03_RS16310	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS16315	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS16330	SM00822	ATC03_RS16330
ATC03_RS16400	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS16405	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS16415	SM00822	ATC03_RS16415
ATC03_RS16420	SM00829	Enoylreductase
ATC03_RS16430	SM00822	ATC03_RS16430
ATC03_RS16445	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS16455	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS16465	SM00487	DEAD-like helicases superfamily
ATC03_RS16465	SM00490	helicase superfamily c-terminal domain
ATC03_RS16475	SM00060	Fibronectin type 3 domain
ATC03_RS16485	SM00420	helix_turn_helix, Deoxyribose operon repressor
ATC03_RS16485	SM01134	ATC03_RS16485
ATC03_RS16590	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS16620	SM00060	Fibronectin type 3 domain
ATC03_RS16645	SM00487	DEAD-like helicases superfamily
ATC03_RS16670	SM00487	DEAD-like helicases superfamily
ATC03_RS16670	SM00490	helicase superfamily c-terminal domain
ATC03_RS16850	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS16880	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS16895	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ATC03_RS16940	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS16960	SM00460	Transglutaminase/protease-like homologues
ATC03_RS17000	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS17080	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS17110	SM00450	Rhodanese Homology Domain
ATC03_RS17155	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS17255	SM00487	DEAD-like helicases superfamily
ATC03_RS17255	SM00490	helicase superfamily c-terminal domain
ATC03_RS17315	SM00458	Ricin-type beta-trefoil
ATC03_RS17320	SM00487	DEAD-like helicases superfamily
ATC03_RS17320	SM00490	helicase superfamily c-terminal domain
ATC03_RS17345	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ATC03_RS17365	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS17410	SM00507	HNH nucleases
ATC03_RS17420	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS17435	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS17475	SM00852	Probable molybdopterin binding domain
ATC03_RS17505	SM00852	Probable molybdopterin binding domain
ATC03_RS17525	SM00852	Probable molybdopterin binding domain
ATC03_RS17545	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS17550	SM00855	Phosphoglycerate mutase family
ATC03_RS17595	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS17600	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS17620	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS17640	SM00422	helix_turn_helix, mercury resistance
ATC03_RS17695	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS17730	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS17755	SM01209	ATC03_RS17755
ATC03_RS17755	SM01210	ATC03_RS17755
ATC03_RS17815	SM01211	ATC03_RS17815
ATC03_RS17890	SM00830	Chorismate mutase type II
ATC03_RS17900	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS17905	SM00060	Fibronectin type 3 domain
ATC03_RS17915	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS17920	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS17930	SM00886	Stress responsive A/B Barrel Domain
ATC03_RS17945	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS17975	SM00387	Histidine kinase-like ATPases
ATC03_RS17980	SM00448	cheY-homologous receiver domain
ATC03_RS17980	SM00850	LytTr DNA-binding domain
ATC03_RS18010	SM00788	Adenylosuccinate synthetase
ATC03_RS18035	SM00155	Phospholipase D. Active site motifs.
ATC03_RS18125	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ATC03_RS18125	SM00267	diguanylate cyclase
ATC03_RS18140	SM00052	Putative diguanylate phosphodiesterase
ATC03_RS18170	SM00529	Helix-turn-helix diphteria tox regulatory element
ATC03_RS18170	SM00899	ATC03_RS18170
ATC03_RS18200	SM00342	helix_turn_helix, arabinose operon control protein
ATC03_RS18215	SM00422	helix_turn_helix, mercury resistance
ATC03_RS18225	SM00100	Cyclic nucleotide-monophosphate binding domain
ATC03_RS18275	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS18275	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS18320	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS18345	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS18390	SM00829	Enoylreductase
ATC03_RS18415	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS18445	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS18515	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS18515	SM00895	ATC03_RS18515
ATC03_RS18535	SM00220	Serine/Threonine protein kinases, catalytic domain
ATC03_RS18555	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS18570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS18570	SM00895	ATC03_RS18570
ATC03_RS18575	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS18580	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_RS18675	SM00421	helix_turn_helix, Lux Regulon
ATC03_RS18675	SM00448	cheY-homologous receiver domain
ATC03_RS18685	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ATC03_RS18705	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS18770	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS18780	SM00829	Enoylreductase
ATC03_RS18810	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS18810	SM01086	C-terminal, D2-small domain, of ClpB protein
ATC03_RS18825	SM00867	YceI-like domain 
ATC03_RS18835	SM00347	helix_turn_helix multiple antibiotic resistance protein
ATC03_RS18920	SM00422	helix_turn_helix, mercury resistance
ATC03_RS18925	SM00271	DnaJ molecular chaperone homology domain
ATC03_RS18940	SM00954	Region found in RelA / SpoT proteins
ATC03_RS18960	SM00090	RIO-like kinase
ATC03_RS18985	SM01217	ATC03_RS18985
ATC03_RS18995	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS19010	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS19065	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS19090	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS19115	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS19120	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS19235	SM01060	ATC03_RS19235
ATC03_RS19280	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS19290	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ATC03_RS19290	SM00866	ATC03_RS19290
ATC03_RS19320	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS19335	SM00411	bacterial (prokaryotic) histone like domain
ATC03_RS19370	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS19400	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS19420	SM00861	Transketolase, pyrimidine binding domain
ATC03_RS19455	SM00226	Low molecular weight phosphatase family
ATC03_RS19480	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ATC03_RS19480	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ATC03_RS19485	SM00346	helix_turn_helix isocitrate lyase regulation
ATC03_RS19515	SM00530	Helix-turn-helix XRE-family like proteins 
ATC03_RS19545	SM00354	helix_turn _helix lactose operon repressor
ATC03_RS19550	SM00062	Bacterial periplasmic substrate-binding proteins
ATC03_RS19560	SM00382	ATPases associated with a variety of cellular activities
ATC03_RS19600	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ATC03_RS19635	SM00470	ParB-like nuclease domain
ATC03_RS19655	SM00393	Putative single-stranded nucleic acids-binding domain
ATC03_RS19665	SM01234	ATC03_RS19665
