CPY64_RS00030	SM00357	Cold shock protein domain
CPY64_RS00055	SM00936	Penicillin-binding protein 5, C-terminal domain 
CPY64_RS00080	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPY64_RS00090	SM00986	Uracil DNA glycosylase superfamily
CPY64_RS00090	SM00987	UreE urease accessory protein, C-terminal domain 
CPY64_RS00120	SM00100	Cyclic nucleotide-monophosphate binding domain
CPY64_RS00120	SM00419	helix_turn_helix, cAMP Regulatory protein
CPY64_RS00195	SM00052	Putative diguanylate phosphodiesterase
CPY64_RS00195	SM00267	diguanylate cyclase
CPY64_RS00210	SM00925	MltA specific insert domain
CPY64_RS00225	SM00052	Putative diguanylate phosphodiesterase
CPY64_RS00225	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS00230	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CPY64_RS00230	SM01049	CPY64_RS00230
CPY64_RS00240	SM00822	CPY64_RS00240
CPY64_RS00265	SM00823	Phosphopantetheine attachment site
CPY64_RS00285	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS00290	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS00310	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS00325	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS00355	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS00370	SM00490	helicase superfamily c-terminal domain
CPY64_RS00395	SM01091	Transporter associated domain
CPY64_RS00450	SM00903	Flavin reductase like domain
CPY64_RS00475	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS00490	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS00490	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CPY64_RS00495	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS00510	SM01130	CPY64_RS00510
CPY64_RS00565	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS00580	SM00487	DEAD-like helicases superfamily
CPY64_RS00580	SM00490	helicase superfamily c-terminal domain
CPY64_RS00660	SM00421	helix_turn_helix, Lux Regulon
CPY64_RS00720	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS00790	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS00790	SM01086	C-terminal, D2-small domain, of ClpB protein
CPY64_RS00805	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CPY64_RS00815	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS00860	SM00996	S-adenosyl-L-homocysteine hydrolase
CPY64_RS00860	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
CPY64_RS00925	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS00980	SM00822	CPY64_RS00980
CPY64_RS00985	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS01070	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS01095	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS01110	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS01115	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS01130	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS01130	SM00895	CPY64_RS01130
CPY64_RS01150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS01150	SM00866	CPY64_RS01150
CPY64_RS01155	SM00344	helix_turn_helix ASNC type
CPY64_RS01200	SM00420	helix_turn_helix, Deoxyribose operon repressor
CPY64_RS01200	SM01134	CPY64_RS01200
CPY64_RS01205	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS01230	SM00965	Secretin and TonB N terminus short domain
CPY64_RS01270	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CPY64_RS01280	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CPY64_RS01285	SM00363	S4 RNA-binding domain
CPY64_RS01320	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS01340	SM00387	Histidine kinase-like ATPases
CPY64_RS01350	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
CPY64_RS01360	SM00644	CPY64_RS01360
CPY64_RS01375	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS01375	SM00962	SRP54-type protein, GTPase domain
CPY64_RS01375	SM00963	SRP54-type protein, helical bundle domain
CPY64_RS01380	SM00257	Lysin motif
CPY64_RS01405	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS01425	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS01435	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS01455	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS01455	SM00448	cheY-homologous receiver domain
CPY64_RS01470	SM01007	Class II Aldolase and Adducin N-terminal domain
CPY64_RS01645	SM01007	Class II Aldolase and Adducin N-terminal domain
CPY64_RS01670	SM00984	UDP binding domain
CPY64_RS01735	SM00849	Metallo-beta-lactamase superfamily
CPY64_RS01740	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CPY64_RS01740	SM01232	CPY64_RS01740
CPY64_RS01745	SM00028	Tetratricopeptide repeats
CPY64_RS01765	SM01400	CPY64_RS01765
CPY64_RS01795	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS01800	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS01825	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS01835	SM00869	Autotransporter beta-domain
CPY64_RS01840	SM00947	Carbonic anhydrase
CPY64_RS01855	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS01895	SM00028	Tetratricopeptide repeats
CPY64_RS01905	SM00822	CPY64_RS01905
CPY64_RS01910	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS01940	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS01945	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS02015	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CPY64_RS02015	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CPY64_RS02020	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CPY64_RS02035	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPY64_RS02045	SM00852	Probable molybdopterin binding domain
CPY64_RS02050	SM00852	Probable molybdopterin binding domain
CPY64_RS02070	SM00421	helix_turn_helix, Lux Regulon
CPY64_RS02070	SM00448	cheY-homologous receiver domain
CPY64_RS02075	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CPY64_RS02075	SM00091	PAS domain
CPY64_RS02075	SM00387	Histidine kinase-like ATPases
CPY64_RS02075	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS02115	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPY64_RS02115	SM00876	Biotin and Thiamin Synthesis associated domain
CPY64_RS02190	SM00052	Putative diguanylate phosphodiesterase
CPY64_RS02190	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CPY64_RS02190	SM00091	PAS domain
CPY64_RS02190	SM00267	diguanylate cyclase
CPY64_RS02200	SM01091	Transporter associated domain
CPY64_RS02215	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPY64_RS02240	SM01323	CPY64_RS02240
CPY64_RS02360	SM00919	Malic enzyme, NAD binding domain
CPY64_RS02360	SM01274	CPY64_RS02360
CPY64_RS02380	SM00861	Transketolase, pyrimidine binding domain
CPY64_RS02385	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CPY64_RS02415	SM00852	Probable molybdopterin binding domain
CPY64_RS02430	SM01001	AIR carboxylase
CPY64_RS02480	SM00903	Flavin reductase like domain
CPY64_RS02510	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS02525	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS02575	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPY64_RS02585	SM00341	Helicase and RNase D C-terminal
CPY64_RS02585	SM00487	DEAD-like helicases superfamily
CPY64_RS02585	SM00490	helicase superfamily c-terminal domain
CPY64_RS02585	SM00956	CPY64_RS02585
CPY64_RS02605	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS02675	SM00842	Cell division protein FtsA
CPY64_RS02680	SM00864	Tubulin/FtsZ family, GTPase domain
CPY64_RS02680	SM00865	Tubulin/FtsZ family, C-terminal domain
CPY64_RS02700	SM00957	SecA DEAD-like domain
CPY64_RS02700	SM00958	SecA preprotein cross-linking domain
CPY64_RS02710	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPY64_RS02710	SM00924	MgtE intracellular N domain
CPY64_RS02750	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS02750	SM00930	CPY64_RS02750
CPY64_RS02765	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS02765	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CPY64_RS02775	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS02805	SM00650	Ribosomal RNA adenine dimethylases
CPY64_RS02825	SM00563	Phosphate acyltransferases
CPY64_RS02875	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPY64_RS02880	SM00986	Uracil DNA glycosylase superfamily
CPY64_RS02880	SM00987	UreE urease accessory protein, C-terminal domain 
CPY64_RS02920	SM00853	MutL C terminal dimerisation domain
CPY64_RS02920	SM01340	CPY64_RS02920
CPY64_RS02930	SM00646	CPY64_RS02930
CPY64_RS02950	SM00919	Malic enzyme, NAD binding domain
CPY64_RS02950	SM01274	CPY64_RS02950
CPY64_RS02965	SM01130	CPY64_RS02965
CPY64_RS02970	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS02970	SM00895	CPY64_RS02970
CPY64_RS03050	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03075	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03085	SM00493	CPY64_RS03085
CPY64_RS03090	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS03095	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03115	SM00965	Secretin and TonB N terminus short domain
CPY64_RS03130	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CPY64_RS03135	SM00851	MGS-like domain
CPY64_RS03135	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CPY64_RS03145	SM00822	CPY64_RS03145
CPY64_RS03150	SM00855	Phosphoglycerate mutase family
CPY64_RS03165	SM01103	CPY64_RS03165
CPY64_RS03175	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03220	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03240	SM00448	cheY-homologous receiver domain
CPY64_RS03240	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS03245	SM00387	Histidine kinase-like ATPases
CPY64_RS03255	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS03340	SM00155	Phospholipase D. Active site motifs.
CPY64_RS03365	SM01130	CPY64_RS03365
CPY64_RS03415	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
CPY64_RS03420	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CPY64_RS03420	SM00534	ATPase domain of DNA mismatch repair MUTS family
CPY64_RS03440	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03455	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03495	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CPY64_RS03540	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS03555	SM01091	Transporter associated domain
CPY64_RS03575	SM00028	Tetratricopeptide repeats
CPY64_RS03580	SM00840	CPY64_RS03580
CPY64_RS03585	SM00478	endonuclease III
CPY64_RS03615	SM00244	prohibitin homologues
CPY64_RS03625	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS03655	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03660	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
CPY64_RS03660	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
CPY64_RS03765	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03775	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03790	SM00841	Elongation factor P, C-terminal
CPY64_RS03790	SM01185	CPY64_RS03790
CPY64_RS03845	SM00091	PAS domain
CPY64_RS03845	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS03855	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS03865	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS03865	SM00866	CPY64_RS03865
CPY64_RS03900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS03900	SM00895	CPY64_RS03900
CPY64_RS03910	SM00919	Malic enzyme, NAD binding domain
CPY64_RS03910	SM01274	CPY64_RS03910
CPY64_RS03920	SM00861	Transketolase, pyrimidine binding domain
CPY64_RS03955	SM00316	Ribosomal protein S1-like RNA-binding domain
CPY64_RS03955	SM00732	Likely ribonuclease with RNase H fold.
CPY64_RS03960	SM00487	DEAD-like helicases superfamily
CPY64_RS03960	SM00491	CPY64_RS03960
CPY64_RS04015	SM00363	S4 RNA-binding domain
CPY64_RS04030	SM00822	CPY64_RS04030
CPY64_RS04070	SM00363	S4 RNA-binding domain
CPY64_RS04080	SM00316	Ribosomal protein S1-like RNA-binding domain
CPY64_RS04080	SM00322	K homology RNA-binding domain
CPY64_RS04100	SM00838	Elongation factor G C-terminus
CPY64_RS04125	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS04135	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CPY64_RS04135	SM00474	3'-5' exonuclease
CPY64_RS04135	SM00475	5'-3' exonuclease
CPY64_RS04135	SM00482	DNA polymerase A domain
CPY64_RS04145	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS04175	SM00450	Rhodanese Homology Domain
CPY64_RS04190	SM00861	Transketolase, pyrimidine binding domain
CPY64_RS04220	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS04235	SM00670	Large family of predicted nucleotide-binding domains
CPY64_RS04285	SM01005	Alanine racemase, C-terminal domain
CPY64_RS04295	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS04315	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS04345	SM00052	Putative diguanylate phosphodiesterase
CPY64_RS04365	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS04365	SM00487	DEAD-like helicases superfamily
CPY64_RS04365	SM00490	helicase superfamily c-terminal domain
CPY64_RS04365	SM00847	Helicase associated domain (HA2)  Add an annotation
CPY64_RS04370	SM00481	DNA polymerase alpha chain like domain
CPY64_RS04420	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS04435	SM00316	Ribosomal protein S1-like RNA-binding domain
CPY64_RS04475	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS04475	SM00895	CPY64_RS04475
CPY64_RS04505	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS04535	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS04620	SM00849	Metallo-beta-lactamase superfamily
CPY64_RS04625	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CPY64_RS04640	SM00422	helix_turn_helix, mercury resistance
CPY64_RS04705	SM00073	Histidine Phosphotransfer domain
CPY64_RS04705	SM00260	Two component signalling adaptor domain
CPY64_RS04705	SM00387	Histidine kinase-like ATPases
CPY64_RS04705	SM01231	CPY64_RS04705
CPY64_RS04710	SM00260	Two component signalling adaptor domain
CPY64_RS04715	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CPY64_RS04715	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPY64_RS04720	SM00138	Methyltransferase, chemotaxis proteins 
CPY64_RS04725	SM00448	cheY-homologous receiver domain
CPY64_RS04730	SM00448	cheY-homologous receiver domain
CPY64_RS04750	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS04750	SM00962	SRP54-type protein, GTPase domain
CPY64_RS04760	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS04775	SM00858	CPY64_RS04775
CPY64_RS04820	SM00047	Lysozyme subfamily 2
CPY64_RS04835	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CPY64_RS04835	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPY64_RS04845	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CPY64_RS04845	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPY64_RS04850	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPY64_RS04855	SM00479	CPY64_RS04855
CPY64_RS04905	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS05050	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS05085	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CPY64_RS05090	SM00091	PAS domain
CPY64_RS05090	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CPY64_RS05090	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPY64_RS05250	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS05255	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS05320	SM00965	Secretin and TonB N terminus short domain
CPY64_RS05330	SM00450	Rhodanese Homology Domain
CPY64_RS05415	SM00357	Cold shock protein domain
CPY64_RS05420	SM00387	Histidine kinase-like ATPases
CPY64_RS05420	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS05425	SM00448	cheY-homologous receiver domain
CPY64_RS05425	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS05560	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS05575	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS05575	SM00895	CPY64_RS05575
CPY64_RS05585	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS05645	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS05650	SM00448	cheY-homologous receiver domain
CPY64_RS05650	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CPY64_RS05655	SM00091	PAS domain
CPY64_RS05655	SM00387	Histidine kinase-like ATPases
CPY64_RS05655	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS05655	SM00448	cheY-homologous receiver domain
CPY64_RS05660	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPY64_RS05660	SM00924	MgtE intracellular N domain
CPY64_RS05770	SM00479	CPY64_RS05770
CPY64_RS05775	SM00267	diguanylate cyclase
CPY64_RS05790	SM00344	helix_turn_helix ASNC type
CPY64_RS05830	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS05850	SM00354	helix_turn _helix lactose operon repressor
CPY64_RS05875	SM00387	Histidine kinase-like ATPases
CPY64_RS05875	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS05880	SM00448	cheY-homologous receiver domain
CPY64_RS05880	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS05970	SM00357	Cold shock protein domain
CPY64_RS05980	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS05980	SM01086	C-terminal, D2-small domain, of ClpB protein
CPY64_RS06020	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS06025	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS06070	SM00904	Riboflavin kinase
CPY64_RS06145	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS06170	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS06200	SM00477	DNA/RNA non-specific endonuclease
CPY64_RS06200	SM00892	DNA/RNA non-specific endonuclease
CPY64_RS06225	SM00422	helix_turn_helix, mercury resistance
CPY64_RS06265	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS06265	SM00994	ClpX C4-type zinc finger
CPY64_RS06265	SM01086	C-terminal, D2-small domain, of ClpB protein
CPY64_RS06270	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS06270	SM00464	Found in ATP-dependent protease La (LON)
CPY64_RS06290	SM00487	DEAD-like helicases superfamily
CPY64_RS06290	SM00490	helicase superfamily c-terminal domain
CPY64_RS06295	SM00226	Low molecular weight phosphatase family
CPY64_RS06345	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CPY64_RS06345	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPY64_RS06385	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS06395	SM00849	Metallo-beta-lactamase superfamily
CPY64_RS06405	SM00481	DNA polymerase alpha chain like domain
CPY64_RS06415	SM01211	CPY64_RS06415
CPY64_RS06420	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPY64_RS06420	SM01240	CPY64_RS06420
CPY64_RS06430	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS06510	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CPY64_RS06520	SM01234	CPY64_RS06520
CPY64_RS06555	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPY64_RS06555	SM00387	Histidine kinase-like ATPases
CPY64_RS06555	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS06560	SM00448	cheY-homologous receiver domain
CPY64_RS06560	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS06565	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS06650	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS06735	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS06750	SM00450	Rhodanese Homology Domain
CPY64_RS06755	SM00232	JAB/MPN domain
CPY64_RS06795	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CPY64_RS06815	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS06820	SM00917	LeuA allosteric (dimerisation) domain
CPY64_RS06825	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS06845	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
CPY64_RS06855	SM00882	Coenzyme A transferase
CPY64_RS06860	SM00882	Coenzyme A transferase
CPY64_RS06910	SM00421	helix_turn_helix, Lux Regulon
CPY64_RS06940	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS06965	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS06975	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS06980	SM00990	CPY64_RS06980
CPY64_RS06985	SM00488	CPY64_RS06985
CPY64_RS06985	SM00491	CPY64_RS06985
CPY64_RS07120	SM01252	CPY64_RS07120
CPY64_RS07380	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS07395	SM00749	bacterial OsmY and nodulation domain
CPY64_RS07445	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS07460	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS07485	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS07485	SM00989	CPY64_RS07485
CPY64_RS07560	SM00354	helix_turn _helix lactose operon repressor
CPY64_RS07595	SM00244	prohibitin homologues
CPY64_RS07640	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CPY64_RS07690	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS07710	SM00873	B3/4 domain
CPY64_RS07710	SM00874	tRNA synthetase B5 domain
CPY64_RS07710	SM00896	Ferredoxin-fold anticodon binding domain
CPY64_RS07715	SM00411	bacterial (prokaryotic) histone like domain
CPY64_RS07720	SM00422	helix_turn_helix, mercury resistance
CPY64_RS07740	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS07755	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS07870	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS07920	SM00481	DNA polymerase alpha chain like domain
CPY64_RS07935	SM01144	CPY64_RS07935
CPY64_RS08025	SM00387	Histidine kinase-like ATPases
CPY64_RS08025	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS08030	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS08030	SM00448	cheY-homologous receiver domain
CPY64_RS08035	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CPY64_RS08055	SM00834	Putative regulatory protein
CPY64_RS08085	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS08115	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS08150	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPY64_RS08155	SM01230	CPY64_RS08155
CPY64_RS08180	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS08205	SM00487	DEAD-like helicases superfamily
CPY64_RS08205	SM00490	helicase superfamily c-terminal domain
CPY64_RS08225	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS08265	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS08270	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS08295	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CPY64_RS08325	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS08330	SM01007	Class II Aldolase and Adducin N-terminal domain
CPY64_RS08355	SM00248	ankyrin repeats
CPY64_RS08425	SM00822	CPY64_RS08425
CPY64_RS08460	SM00867	YceI-like domain 
CPY64_RS08465	SM00867	YceI-like domain 
CPY64_RS08490	SM00248	ankyrin repeats
CPY64_RS08605	SM00935	Outer membrane protein (OmpH-like)
CPY64_RS08615	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CPY64_RS08660	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CPY64_RS08715	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
CPY64_RS08715	SM00091	PAS domain
CPY64_RS08715	SM00387	Histidine kinase-like ATPases
CPY64_RS08715	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS08720	SM00421	helix_turn_helix, Lux Regulon
CPY64_RS08720	SM00448	cheY-homologous receiver domain
CPY64_RS08745	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CPY64_RS08755	SM00422	helix_turn_helix, mercury resistance
CPY64_RS08780	SM00822	CPY64_RS08780
CPY64_RS08800	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS08845	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS08910	SM00072	Guanylate kinase homologues.
CPY64_RS08915	SM01409	CPY64_RS08915
CPY64_RS08920	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CPY64_RS08920	SM00954	Region found in RelA / SpoT proteins
CPY64_RS08955	SM00363	S4 RNA-binding domain
CPY64_RS08975	SM00938	Nitrogen regulatory protein P-II
CPY64_RS09015	SM00257	Lysin motif
CPY64_RS09030	SM01207	CPY64_RS09030
CPY64_RS09065	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS09080	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS09115	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS09155	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CPY64_RS09160	SM01329	CPY64_RS09160
CPY64_RS09175	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS09190	SM00421	helix_turn_helix, Lux Regulon
CPY64_RS09190	SM00448	cheY-homologous receiver domain
CPY64_RS09195	SM00387	Histidine kinase-like ATPases
CPY64_RS09195	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS09225	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPY64_RS09260	SM00240	Forkhead associated domain
CPY64_RS09270	SM00858	CPY64_RS09270
CPY64_RS09330	SM00881	CoA binding domain
CPY64_RS09360	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS09365	SM00448	cheY-homologous receiver domain
CPY64_RS09365	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS09370	SM00387	Histidine kinase-like ATPases
CPY64_RS09370	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS09385	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS09435	SM01359	CPY64_RS09435
CPY64_RS09435	SM01360	CPY64_RS09435
CPY64_RS09450	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPY64_RS09505	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS09520	SM00387	Histidine kinase-like ATPases
CPY64_RS09520	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS09525	SM00448	cheY-homologous receiver domain
CPY64_RS09525	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS09545	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS09575	SM00357	Cold shock protein domain
CPY64_RS09730	SM01040	BRO family, N-terminal domain
CPY64_RS09790	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS09895	SM00411	bacterial (prokaryotic) histone like domain
CPY64_RS09920	SM00344	helix_turn_helix ASNC type
CPY64_RS09930	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPY64_RS09950	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS09960	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CPY64_RS09965	SM00316	Ribosomal protein S1-like RNA-binding domain
CPY64_RS09965	SM00357	Cold shock protein domain
CPY64_RS09965	SM00955	CPY64_RS09965
CPY64_RS09980	SM00354	helix_turn _helix lactose operon repressor
CPY64_RS09995	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS10000	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS10065	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS10140	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS10165	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CPY64_RS10170	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CPY64_RS10190	SM00448	cheY-homologous receiver domain
CPY64_RS10190	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS10195	SM00387	Histidine kinase-like ATPases
CPY64_RS10205	SM00400	zinc finger
CPY64_RS10205	SM00493	CPY64_RS10205
CPY64_RS10205	SM00766	DNA primase DnaG DnaB-binding
CPY64_RS10220	SM00788	Adenylosuccinate synthetase
CPY64_RS10230	SM00244	prohibitin homologues
CPY64_RS10235	SM00244	prohibitin homologues
CPY64_RS10260	SM00564	beta-propeller repeat
CPY64_RS10290	SM00562	CPY64_RS10290
CPY64_RS10320	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CPY64_RS10330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS10330	SM00895	CPY64_RS10330
CPY64_RS10380	SM00434	DNA Topoisomerase IV
CPY64_RS10385	SM00387	Histidine kinase-like ATPases
CPY64_RS10385	SM00433	TopoisomeraseII
CPY64_RS10395	SM00357	Cold shock protein domain
CPY64_RS10395	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS10395	SM00959	Rho termination factor, N-terminal domain
CPY64_RS10400	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CPY64_RS10405	SM00903	Flavin reductase like domain
CPY64_RS10420	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS10440	SM00989	CPY64_RS10440
CPY64_RS10445	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS10445	SM00895	CPY64_RS10445
CPY64_RS10470	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS10470	SM01086	C-terminal, D2-small domain, of ClpB protein
CPY64_RS10475	SM00100	Cyclic nucleotide-monophosphate binding domain
CPY64_RS10475	SM00419	helix_turn_helix, cAMP Regulatory protein
CPY64_RS10545	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CPY64_RS10545	SM00465	GIY-YIG type nucleases (URI domain)
CPY64_RS10605	SM00479	CPY64_RS10605
CPY64_RS10655	SM00893	Electron transfer flavoprotein domain
CPY64_RS10660	SM00893	Electron transfer flavoprotein domain
CPY64_RS10680	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CPY64_RS10705	SM00411	bacterial (prokaryotic) histone like domain
CPY64_RS10710	SM00316	Ribosomal protein S1-like RNA-binding domain
CPY64_RS10730	SM00830	Chorismate mutase type II
CPY64_RS10740	SM00434	DNA Topoisomerase IV
CPY64_RS10795	SM01060	CPY64_RS10795
CPY64_RS10810	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS10860	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS10925	SM00421	helix_turn_helix, Lux Regulon
CPY64_RS10925	SM00448	cheY-homologous receiver domain
CPY64_RS10930	SM00091	PAS domain
CPY64_RS10930	SM00387	Histidine kinase-like ATPases
CPY64_RS10930	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS10930	SM00448	cheY-homologous receiver domain
CPY64_RS10950	SM00387	Histidine kinase-like ATPases
CPY64_RS10950	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS10955	SM00448	cheY-homologous receiver domain
CPY64_RS10960	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CPY64_RS11025	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS11035	SM00938	Nitrogen regulatory protein P-II
CPY64_RS11090	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS11105	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS11140	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS11160	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS11190	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS11190	SM00529	Helix-turn-helix diphteria tox regulatory element
CPY64_RS11205	SM00528	Domain in histone-like proteins of HNS family
CPY64_RS11225	SM00829	Enoylreductase
CPY64_RS11235	SM01329	CPY64_RS11235
CPY64_RS11255	SM01209	CPY64_RS11255
CPY64_RS11255	SM01210	CPY64_RS11255
CPY64_RS11370	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS11460	SM01192	CPY64_RS11460
CPY64_RS11460	SM01193	CPY64_RS11460
CPY64_RS11465	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS11505	SM00882	Coenzyme A transferase
CPY64_RS11510	SM00882	Coenzyme A transferase
CPY64_RS11610	SM00358	Double-stranded RNA binding motif
CPY64_RS11610	SM00535	Ribonuclease III family
CPY64_RS11620	SM00838	Elongation factor G C-terminus
CPY64_RS11625	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CPY64_RS11650	SM00825	Beta-ketoacyl synthase
CPY64_RS11660	SM00822	CPY64_RS11660
CPY64_RS11665	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CPY64_RS11700	SM00644	CPY64_RS11700
CPY64_RS11720	SM00363	S4 RNA-binding domain
CPY64_RS11725	SM00316	Ribosomal protein S1-like RNA-binding domain
CPY64_RS11745	SM00954	Region found in RelA / SpoT proteins
CPY64_RS11775	SM00478	endonuclease III
CPY64_RS11775	SM00525	CPY64_RS11775
CPY64_RS11790	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS11795	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS11830	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CPY64_RS11830	SM00292	breast cancer carboxy-terminal domain
CPY64_RS11830	SM00532	Ligase N family
CPY64_RS11835	SM00771	ZipA, C-terminal domain (FtsZ-binding)
CPY64_RS11840	SM00968	SMC proteins Flexible Hinge Domain
CPY64_RS11850	SM00986	Uracil DNA glycosylase superfamily
CPY64_RS11850	SM00987	UreE urease accessory protein, C-terminal domain 
CPY64_RS11860	SM00448	cheY-homologous receiver domain
CPY64_RS11860	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS11865	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPY64_RS11865	SM00387	Histidine kinase-like ATPases
CPY64_RS11865	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS11880	SM00487	DEAD-like helicases superfamily
CPY64_RS11880	SM00490	helicase superfamily c-terminal domain
CPY64_RS11880	SM00982	CPY64_RS11880
CPY64_RS11880	SM01058	CarD-like/TRCF domain
CPY64_RS11935	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
CPY64_RS11940	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
CPY64_RS11990	SM00829	Enoylreductase
CPY64_RS12015	SM00316	Ribosomal protein S1-like RNA-binding domain
CPY64_RS12015	SM00322	K homology RNA-binding domain
CPY64_RS12020	SM01387	CPY64_RS12020
CPY64_RS12065	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS12090	SM00885	D5 N terminal like
CPY64_RS12130	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS12140	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS12140	SM00843	CPY64_RS12140
CPY64_RS12150	SM00463	Small MutS-related domain
CPY64_RS12155	SM00028	Tetratricopeptide repeats
CPY64_RS12170	SM00903	Flavin reductase like domain
CPY64_RS12175	SM00886	Stress responsive A/B Barrel Domain
CPY64_RS12195	SM01329	CPY64_RS12195
CPY64_RS12215	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS12235	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS12250	SM00028	Tetratricopeptide repeats
CPY64_RS12280	SM00858	CPY64_RS12280
CPY64_RS12315	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS12330	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS12340	SM00271	DnaJ molecular chaperone homology domain
CPY64_RS12395	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS12395	SM00895	CPY64_RS12395
CPY64_RS12430	SM00267	diguanylate cyclase
CPY64_RS12450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS12450	SM00895	CPY64_RS12450
CPY64_RS12515	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS12530	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS12550	SM00953	CPY64_RS12550
CPY64_RS12565	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS12570	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS12595	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS12600	SM00487	DEAD-like helicases superfamily
CPY64_RS12600	SM00490	helicase superfamily c-terminal domain
CPY64_RS12660	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CPY64_RS12690	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS12720	SM00822	CPY64_RS12720
CPY64_RS12735	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS12780	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS12815	SM00422	helix_turn_helix, mercury resistance
CPY64_RS12840	SM01012	CPY64_RS12840
CPY64_RS12880	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS12940	SM00052	Putative diguanylate phosphodiesterase
CPY64_RS12945	SM00857	Resolvase, N terminal domain
CPY64_RS12955	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS13010	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPY64_RS13030	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS13070	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS13075	SM00852	Probable molybdopterin binding domain
CPY64_RS13090	SM00487	DEAD-like helicases superfamily
CPY64_RS13090	SM00490	helicase superfamily c-terminal domain
CPY64_RS13150	SM00798	AICARFT/IMPCHase bienzyme
CPY64_RS13150	SM00851	MGS-like domain
CPY64_RS13160	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CPY64_RS13170	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS13185	SM00151	SWI complex, BAF60b domains
CPY64_RS13235	SM00450	Rhodanese Homology Domain
CPY64_RS13300	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS13315	SM00387	Histidine kinase-like ATPases
CPY64_RS13315	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS13320	SM00448	cheY-homologous receiver domain
CPY64_RS13320	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS13405	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS13450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS13490	SM01150	CPY64_RS13490
CPY64_RS13530	SM00267	diguanylate cyclase
CPY64_RS13550	SM00883	Chaperonin 10 Kd subunit
CPY64_RS13565	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CPY64_RS13580	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS13615	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS13620	SM00880	CPY64_RS13620
CPY64_RS13620	SM01118	CPY64_RS13620
CPY64_RS13625	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS13625	SM00962	SRP54-type protein, GTPase domain
CPY64_RS13625	SM00963	SRP54-type protein, helical bundle domain
CPY64_RS13690	SM00869	Autotransporter beta-domain
CPY64_RS13710	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CPY64_RS13720	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CPY64_RS13730	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS13735	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS13760	SM00267	diguanylate cyclase
CPY64_RS13795	SM00849	Metallo-beta-lactamase superfamily
CPY64_RS13800	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS13800	SM00866	CPY64_RS13800
CPY64_RS13805	SM01043	Bacterial transcriptional activator domain
CPY64_RS13810	SM00155	Phospholipase D. Active site motifs.
CPY64_RS13845	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS13865	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CPY64_RS13925	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS13930	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS13975	SM00479	CPY64_RS13975
CPY64_RS14000	SM00849	Metallo-beta-lactamase superfamily
CPY64_RS14005	SM00257	Lysin motif
CPY64_RS14025	SM01092	CO dehydrogenase flavoprotein C-terminal domain
CPY64_RS14035	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
CPY64_RS14045	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS14050	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS14050	SM00448	cheY-homologous receiver domain
CPY64_RS14055	SM00387	Histidine kinase-like ATPases
CPY64_RS14055	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS14070	SM00450	Rhodanese Homology Domain
CPY64_RS14100	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS14130	SM00822	CPY64_RS14130
CPY64_RS14160	SM00881	CoA binding domain
CPY64_RS14170	SM00829	Enoylreductase
CPY64_RS14185	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS14195	SM00869	Autotransporter beta-domain
CPY64_RS14200	SM00849	Metallo-beta-lactamase superfamily
CPY64_RS14210	SM01043	Bacterial transcriptional activator domain
CPY64_RS14235	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS14235	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CPY64_RS14240	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CPY64_RS14260	SM00448	cheY-homologous receiver domain
CPY64_RS14260	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS14265	SM00387	Histidine kinase-like ATPases
CPY64_RS14265	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS14300	SM00363	S4 RNA-binding domain
CPY64_RS14325	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CPY64_RS14365	SM00831	Cation transporter/ATPase, N-terminus
CPY64_RS14370	SM00387	Histidine kinase-like ATPases
CPY64_RS14370	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS14375	SM00421	helix_turn_helix, Lux Regulon
CPY64_RS14375	SM00448	cheY-homologous receiver domain
CPY64_RS14385	SM01322	CPY64_RS14385
CPY64_RS14395	SM00344	helix_turn_helix ASNC type
CPY64_RS14440	SM00878	Biotin carboxylase C-terminal domain
CPY64_RS14470	SM00955	CPY64_RS14470
CPY64_RS14500	SM00563	Phosphate acyltransferases
CPY64_RS14505	SM00732	Likely ribonuclease with RNase H fold.
CPY64_RS14540	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS14575	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
CPY64_RS14585	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS14590	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS14595	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS14620	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS14635	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS14640	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS14650	SM00478	endonuclease III
CPY64_RS14690	SM00845	GatB domain
CPY64_RS14735	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
CPY64_RS14735	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS14740	SM00100	Cyclic nucleotide-monophosphate binding domain
CPY64_RS14740	SM00419	helix_turn_helix, cAMP Regulatory protein
CPY64_RS14810	SM00421	helix_turn_helix, Lux Regulon
CPY64_RS14860	SM00873	B3/4 domain
CPY64_RS14870	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS14875	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS14880	SM01018	B12 binding domain
CPY64_RS14895	SM00965	Secretin and TonB N terminus short domain
CPY64_RS14965	SM00507	HNH nucleases
CPY64_RS15000	SM00978	CPY64_RS15000
CPY64_RS15010	SM00448	cheY-homologous receiver domain
CPY64_RS15010	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS15015	SM00387	Histidine kinase-like ATPases
CPY64_RS15015	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS15025	SM00796	Allophanate hydrolase subunit 1
CPY64_RS15030	SM00797	Allophanate hydrolase subunit 2
CPY64_RS15065	SM00869	Autotransporter beta-domain
CPY64_RS15075	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS15080	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS15105	SM00116	Domain in cystathionine beta-synthase and other proteins.
CPY64_RS15125	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS15170	SM00749	bacterial OsmY and nodulation domain
CPY64_RS15195	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS15205	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CPY64_RS15205	SM00245	tail specific protease
CPY64_RS15215	SM00855	Phosphoglycerate mutase family
CPY64_RS15220	SM00450	Rhodanese Homology Domain
CPY64_RS15265	SM00448	cheY-homologous receiver domain
CPY64_RS15265	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS15270	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPY64_RS15270	SM00387	Histidine kinase-like ATPases
CPY64_RS15270	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS15280	SM00448	cheY-homologous receiver domain
CPY64_RS15285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CPY64_RS15285	SM00387	Histidine kinase-like ATPases
CPY64_RS15285	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS15300	SM00729	Elongator protein 3, MiaB family, Radical SAM
CPY64_RS15330	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS15450	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS15500	SM00905	Dihydroneopterin aldolase
CPY64_RS15525	SM00937	CPY64_RS15525
CPY64_RS15570	SM00965	Secretin and TonB N terminus short domain
CPY64_RS15615	SM00387	Histidine kinase-like ATPases
CPY64_RS15615	SM00388	His Kinase A (phosphoacceptor) domain
CPY64_RS15620	SM00448	cheY-homologous receiver domain
CPY64_RS15620	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS15640	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS15655	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS15670	SM00100	Cyclic nucleotide-monophosphate binding domain
CPY64_RS15670	SM00419	helix_turn_helix, cAMP Regulatory protein
CPY64_RS15680	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
CPY64_RS15720	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS15725	SM01007	Class II Aldolase and Adducin N-terminal domain
CPY64_RS15775	SM00450	Rhodanese Homology Domain
CPY64_RS15780	SM00900	CPY64_RS15780
CPY64_RS15790	SM00710	Parallel beta-helix repeats
CPY64_RS15790	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
CPY64_RS15795	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS15880	SM00984	UDP binding domain
CPY64_RS15900	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS15920	SM00822	CPY64_RS15920
CPY64_RS15920	SM00823	Phosphopantetheine attachment site
CPY64_RS15920	SM00825	Beta-ketoacyl synthase
CPY64_RS15920	SM00826	CPY64_RS15920
CPY64_RS15920	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CPY64_RS15920	SM00829	Enoylreductase
CPY64_RS15920	SM01294	CPY64_RS15920
CPY64_RS15925	SM00825	Beta-ketoacyl synthase
CPY64_RS15940	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS16080	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS16105	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS16185	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CPY64_RS16295	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS16295	SM00895	CPY64_RS16295
CPY64_RS16300	SM00344	helix_turn_helix ASNC type
CPY64_RS16345	SM00267	diguanylate cyclase
CPY64_RS16390	SM00822	CPY64_RS16390
CPY64_RS16425	SM00749	bacterial OsmY and nodulation domain
CPY64_RS16435	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS16455	SM00965	Secretin and TonB N terminus short domain
CPY64_RS16475	SM00344	helix_turn_helix ASNC type
CPY64_RS16570	SM00829	Enoylreductase
CPY64_RS16575	SM00155	Phospholipase D. Active site motifs.
CPY64_RS16595	SM00834	Putative regulatory protein
CPY64_RS16650	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS16650	SM00866	CPY64_RS16650
CPY64_RS16655	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS16685	SM00422	helix_turn_helix, mercury resistance
CPY64_RS16695	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS16750	SM00849	Metallo-beta-lactamase superfamily
CPY64_RS16810	SM01236	CPY64_RS16810
CPY64_RS16830	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS16830	SM00895	CPY64_RS16830
CPY64_RS16875	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS16875	SM00895	CPY64_RS16875
CPY64_RS16895	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CPY64_RS16925	SM00052	Putative diguanylate phosphodiesterase
CPY64_RS16925	SM00267	diguanylate cyclase
CPY64_RS16965	SM01004	Delta-aminolevulinic acid dehydratase
CPY64_RS16980	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS16985	SM00903	Flavin reductase like domain
CPY64_RS17000	SM00662	RNA polymerases D
CPY64_RS17005	SM00363	S4 RNA-binding domain
CPY64_RS17005	SM01390	CPY64_RS17005
CPY64_RS17080	SM01374	CPY64_RS17080
CPY64_RS17085	SM00052	Putative diguanylate phosphodiesterase
CPY64_RS17085	SM00267	diguanylate cyclase
CPY64_RS17095	SM00327	von Willebrand factor (vWF) type A domain
CPY64_RS17100	SM00421	helix_turn_helix, Lux Regulon
CPY64_RS17110	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS17200	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS17215	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS17235	SM00322	K homology RNA-binding domain
CPY64_RS17250	SM01382	CPY64_RS17250
CPY64_RS17250	SM01383	CPY64_RS17250
CPY64_RS17270	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS17285	SM01403	CPY64_RS17285
CPY64_RS17295	SM00838	Elongation factor G C-terminus
CPY64_RS17295	SM00889	Elongation factor G, domain IV
CPY64_RS17310	SM00448	cheY-homologous receiver domain
CPY64_RS17310	SM00862	Transcriptional regulatory protein, C terminal
CPY64_RS17320	SM00387	Histidine kinase-like ATPases
CPY64_RS17320	SM01080	CPY64_RS17320
CPY64_RS17325	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS17340	SM00663	RNA polymerase I subunit A N-terminus
CPY64_RS17370	SM00649	Ribosomal protein L11/L12
CPY64_RS17375	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CPY64_RS17375	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CPY64_RS17415	SM00470	ParB-like nuclease domain
CPY64_RS17430	SM01228	CPY64_RS17430
CPY64_RS17445	SM00267	diguanylate cyclase
CPY64_RS17490	SM00869	Autotransporter beta-domain
CPY64_RS17520	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS17565	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS17570	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS17610	SM01060	CPY64_RS17610
CPY64_RS17620	SM01234	CPY64_RS17620
CPY64_RS17635	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS17635	SM00760	Bacterial dnaA protein helix-turn-helix domain
CPY64_RS17640	SM00480	DNA polymerase III beta subunit
CPY64_RS17645	SM00387	Histidine kinase-like ATPases
CPY64_RS17645	SM00433	TopoisomeraseII
CPY64_RS17650	SM00363	S4 RNA-binding domain
CPY64_RS17700	SM01130	CPY64_RS17700
CPY64_RS17715	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS17755	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS17765	SM00829	Enoylreductase
CPY64_RS17775	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS17775	SM00895	CPY64_RS17775
CPY64_RS17810	SM01007	Class II Aldolase and Adducin N-terminal domain
CPY64_RS17835	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS17855	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS17855	SM00866	CPY64_RS17855
CPY64_RS17875	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS17875	SM00895	CPY64_RS17875
CPY64_RS17895	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS17940	SM00346	helix_turn_helix isocitrate lyase regulation
CPY64_RS17960	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS17975	SM00347	helix_turn_helix multiple antibiotic resistance protein
CPY64_RS18080	SM00903	Flavin reductase like domain
CPY64_RS18090	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS18095	SM00903	Flavin reductase like domain
CPY64_RS18100	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS18115	SM00965	Secretin and TonB N terminus short domain
CPY64_RS18130	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS18135	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS18170	SM00965	Secretin and TonB N terminus short domain
CPY64_RS18185	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS18205	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS18245	SM00857	Resolvase, N terminal domain
CPY64_RS18280	SM00342	helix_turn_helix, arabinose operon control protein
CPY64_RS18345	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
CPY64_RS18375	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CPY64_RS18375	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CPY64_RS18375	SM00493	CPY64_RS18375
CPY64_RS18395	SM00878	Biotin carboxylase C-terminal domain
CPY64_RS18395	SM01209	CPY64_RS18395
CPY64_RS18420	SM00422	helix_turn_helix, mercury resistance
CPY64_RS18430	SM00849	Metallo-beta-lactamase superfamily
CPY64_RS18450	SM00836	DALR anticodon binding domain
CPY64_RS18450	SM01016	Arginyl tRNA synthetase N terminal dom
CPY64_RS18475	SM00917	LeuA allosteric (dimerisation) domain
CPY64_RS18565	SM00487	DEAD-like helicases superfamily
CPY64_RS18565	SM00490	helicase superfamily c-terminal domain
CPY64_RS18655	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS18715	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CPY64_RS18715	SM00895	CPY64_RS18715
CPY64_RS18740	SM00530	Helix-turn-helix XRE-family like proteins 
CPY64_RS18750	SM00052	Putative diguanylate phosphodiesterase
CPY64_RS18750	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS18750	SM00267	diguanylate cyclase
CPY64_RS18780	SM00870	CPY64_RS18780
CPY64_RS18795	SM00062	Bacterial periplasmic substrate-binding proteins
CPY64_RS18800	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS18805	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CPY64_RS18820	SM00100	Cyclic nucleotide-monophosphate binding domain
CPY64_RS18830	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS18850	SM00382	ATPases associated with a variety of cellular activities
CPY64_RS18860	SM00062	Bacterial periplasmic substrate-binding proteins
