AFA_RS00005 PF00308 Bacterial dnaA protein AFA_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix AFA_RS00005 PF11638 DnaA N-terminal domain AFA_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AFA_RS00010 PF02767 DNA polymerase III beta subunit, central domain AFA_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AFA_RS00015 PF00204 DNA gyrase B AFA_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus AFA_RS00015 PF01751 Toprim domain AFA_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS00020 PF00849 RNA pseudouridylate synthase AFA_RS00020 PF01479 S4 domain AFA_RS00025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS00025 PF03466 LysR substrate binding domain AFA_RS00030 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS00035 PF00171 Aldehyde dehydrogenase family AFA_RS00040 PF00732 GMC oxidoreductase AFA_RS00040 PF05199 GMC oxidoreductase AFA_RS00045 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS00050 PF00753 Metallo-beta-lactamase superfamily AFA_RS00055 PF04828 Glutathione-dependent formaldehyde-activating enzyme AFA_RS00060 PF00392 Bacterial regulatory proteins, gntR family AFA_RS00060 PF07729 FCD domain AFA_RS00065 PF06808 AFA_RS00065 AFA_RS00070 PF04290 AFA_RS00070 AFA_RS00075 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS00075 PF00175 Oxidoreductase NAD-binding domain AFA_RS00080 PF00355 Rieske [2Fe-2S] domain AFA_RS00085 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFA_RS00085 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AFA_RS00090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS00090 PF03466 LysR substrate binding domain AFA_RS00095 PF00596 Class II Aldolase and Adducin N-terminal domain AFA_RS00100 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS00105 PF13458 Periplasmic binding protein AFA_RS00110 PF02653 AFA_RS00110 AFA_RS00115 PF02653 AFA_RS00115 AFA_RS00120 PF00005 ABC transporter AFA_RS00120 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_RS00125 PF00501 AMP-binding enzyme AFA_RS00125 PF13193 AMP-binding enzyme C-terminal domain AFA_RS00135 PF12697 Alpha/beta hydrolase family AFA_RS00140 PF00392 Bacterial regulatory proteins, gntR family AFA_RS00140 PF07702 UTRA domain AFA_RS00145 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS00155 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS00160 PF00392 Bacterial regulatory proteins, gntR family AFA_RS00160 PF07729 FCD domain AFA_RS00165 PF00892 EamA-like transporter family AFA_RS00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS00170 PF03466 LysR substrate binding domain AFA_RS00175 PF13343 Bacterial extracellular solute-binding protein AFA_RS00180 PF00005 ABC transporter AFA_RS00180 PF08402 TOBE domain AFA_RS00185 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS00190 PF00155 Aminotransferase class I and II AFA_RS00195 PF13714 Phosphoenolpyruvate phosphomutase AFA_RS00200 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFA_RS00200 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFA_RS00205 PF00107 Zinc-binding dehydrogenase AFA_RS00205 PF08240 Alcohol dehydrogenase GroES-like domain AFA_RS00210 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS00215 PF07690 Major Facilitator Superfamily AFA_RS00220 PF13410 Glutathione S-transferase, C-terminal domain AFA_RS00220 PF13417 Glutathione S-transferase, N-terminal domain AFA_RS00225 PF06189 AFA_RS00225 AFA_RS00230 PF01614 Bacterial transcriptional regulator AFA_RS00230 PF09339 IclR helix-turn-helix domain AFA_RS00235 PF00884 Sulfatase AFA_RS00235 PF16347 AFA_RS00235 AFA_RS00240 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS00245 PF01047 MarR family AFA_RS00250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_RS00255 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFA_RS00260 PF01047 MarR family AFA_RS00265 PF03061 Thioesterase superfamily AFA_RS00270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFA_RS00275 PF07883 Cupin domain AFA_RS00280 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFA_RS00285 PF00795 Carbon-nitrogen hydrolase AFA_RS00290 PF04199 Putative cyclase AFA_RS00295 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS00295 PF00175 Oxidoreductase NAD-binding domain AFA_RS00295 PF00970 Oxidoreductase FAD-binding domain AFA_RS00300 PF00355 Rieske [2Fe-2S] domain AFA_RS00300 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_RS00305 PF00866 Ring hydroxylating beta subunit AFA_RS00310 PF00501 AMP-binding enzyme AFA_RS00310 PF13193 AMP-binding enzyme C-terminal domain AFA_RS00320 PF01796 AFA_RS00320 AFA_RS00320 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) AFA_RS00325 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS00330 PF07690 Major Facilitator Superfamily AFA_RS00335 PF13411 MerR HTH family regulatory protein AFA_RS00340 PF04290 AFA_RS00340 AFA_RS00345 PF06808 AFA_RS00345 AFA_RS00350 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS00360 PF13557 AFA_RS00360 AFA_RS00365 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS00375 PF01613 Flavin reductase like domain AFA_RS00380 PF13450 NAD(P)-binding Rossmann-like domain AFA_RS00385 PF12833 Helix-turn-helix domain AFA_RS00385 PF14525 AFA_RS00385 AFA_RS00390 PF01613 Flavin reductase like domain AFA_RS00395 PF00005 ABC transporter AFA_RS00405 PF02261 Aspartate decarboxylase AFA_RS00410 PF00005 ABC transporter AFA_RS00410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFA_RS00415 PF00005 ABC transporter AFA_RS00415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFA_RS00420 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS00425 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS00430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFA_RS00435 PF00817 impB/mucB/samB family AFA_RS00435 PF11799 impB/mucB/samB family C-terminal domain AFA_RS00440 PF04542 Sigma-70 region 2 AFA_RS00440 PF08281 Sigma-70, region 4 AFA_RS00445 PF04773 FecR protein AFA_RS00445 PF16220 AFA_RS00445 AFA_RS00450 PF00593 TonB dependent receptor AFA_RS00450 PF07660 Secretin and TonB N terminus short domain AFA_RS00450 PF07715 TonB-dependent Receptor Plug Domain AFA_RS00455 PF00144 Beta-lactamase AFA_RS00460 PF00202 Aminotransferase class-III AFA_RS00465 PF01381 Helix-turn-helix AFA_RS00470 PF05016 Plasmid stabilisation system protein AFA_RS00475 PF03180 NLPA lipoprotein AFA_RS00480 PF03180 NLPA lipoprotein AFA_RS00485 PF00005 ABC transporter AFA_RS00485 PF09383 NIL domain AFA_RS00490 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS00495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_RS00495 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS00500 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS00500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_RS00500 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS00505 PF00296 Luciferase-like monooxygenase AFA_RS00510 PF03180 NLPA lipoprotein AFA_RS00515 PF00296 Luciferase-like monooxygenase AFA_RS00520 PF03180 NLPA lipoprotein AFA_RS00525 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS00525 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS00530 PF04909 Amidohydrolase AFA_RS00535 PF00296 Luciferase-like monooxygenase AFA_RS00540 PF03358 NADPH-dependent FMN reductase AFA_RS00545 PF12973 ChrR Cupin-like domain AFA_RS00550 PF12833 Helix-turn-helix domain AFA_RS00550 PF14525 AFA_RS00550 AFA_RS00555 PF01925 AFA_RS00555 AFA_RS00560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS00560 PF03466 LysR substrate binding domain AFA_RS00565 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFA_RS00565 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFA_RS00570 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS00575 PF13531 Bacterial extracellular solute-binding protein AFA_RS00580 PF01274 Malate synthase AFA_RS00590 PF01048 Phosphorylase superfamily AFA_RS00590 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AFA_RS00595 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS00600 PF06808 AFA_RS00600 AFA_RS00605 PF04290 AFA_RS00605 AFA_RS00610 PF00856 SET domain AFA_RS00615 PF00205 Thiamine pyrophosphate enzyme, central domain AFA_RS00615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_RS00615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFA_RS00620 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS00625 PF04290 AFA_RS00625 AFA_RS00630 PF06808 AFA_RS00630 AFA_RS00640 PF02661 Fic/DOC family AFA_RS00645 PF01131 DNA topoisomerase AFA_RS00645 PF01751 Toprim domain AFA_RS00645 PF13342 AFA_RS00645 AFA_RS00650 PF09925 AFA_RS00650 AFA_RS00655 PF14345 AFA_RS00655 AFA_RS00655 PF14351 AFA_RS00655 AFA_RS00660 PF04361 AFA_RS00660 AFA_RS00665 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFA_RS00670 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFA_RS00670 PF00364 Biotin-requiring enzyme AFA_RS00670 PF02785 Biotin carboxylase C-terminal domain AFA_RS00670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFA_RS00675 PF01039 Carboxyl transferase domain AFA_RS00680 PF00108 Thiolase, N-terminal domain AFA_RS00680 PF02803 Thiolase, C-terminal domain AFA_RS00685 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AFA_RS00690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS00690 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS00690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_RS00695 PF13411 MerR HTH family regulatory protein AFA_RS00700 PF00753 Metallo-beta-lactamase superfamily AFA_RS00705 PF01053 Cys/Met metabolism PLP-dependent enzyme AFA_RS00710 PF01323 DSBA-like thioredoxin domain AFA_RS00715 PF05036 Sporulation related domain AFA_RS00720 PF00750 tRNA synthetases class I (R) AFA_RS00720 PF03485 Arginyl tRNA synthetase N terminal domain AFA_RS00720 PF05746 DALR anticodon binding domain AFA_RS00725 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) AFA_RS00730 PF08895 AFA_RS00730 AFA_RS00745 PF09234 Domain of unknown function (DUF1963) AFA_RS00750 PF00682 HMGL-like AFA_RS00750 PF08502 LeuA allosteric (dimerisation) domain AFA_RS00760 PF00309 AFA_RS00760 AFA_RS00760 PF04552 Sigma-54, DNA binding domain AFA_RS00760 PF04963 Sigma-54 factor, core binding domain AFA_RS00765 PF00593 TonB dependent receptor AFA_RS00765 PF07715 TonB-dependent Receptor Plug Domain AFA_RS00770 PF00694 Aconitase C-terminal domain AFA_RS00775 PF00330 Aconitase family (aconitate hydratase) AFA_RS00780 PF00682 HMGL-like AFA_RS00785 PF02515 CoA-transferase family III AFA_RS00790 PF06808 AFA_RS00790 AFA_RS00795 PF04290 AFA_RS00795 AFA_RS00800 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS00805 PF00857 Isochorismatase family AFA_RS00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS00810 PF03466 LysR substrate binding domain AFA_RS00815 PF04324 BFD-like [2Fe-2S] binding domain AFA_RS00820 PF00210 Ferritin-like domain AFA_RS00830 PF00009 Elongation factor Tu GTP binding domain AFA_RS00830 PF03144 Elongation factor Tu domain 2 AFA_RS00830 PF16658 AFA_RS00830 AFA_RS00835 PF01810 AFA_RS00835 AFA_RS00840 PF00270 DEAD/DEAH box helicase AFA_RS00840 PF00271 Helicase conserved C-terminal domain AFA_RS00845 PF04011 LemA family AFA_RS00850 PF04536 TLP18 AFA_RS00855 PF04536 TLP18 AFA_RS00860 PF11067 AFA_RS00860 AFA_RS00865 PF01926 50S ribosome-binding GTPase AFA_RS00865 PF11981 AFA_RS00865 AFA_RS00870 PF04343 AFA_RS00870 AFA_RS00875 PF04226 AFA_RS00875 AFA_RS00885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS00885 PF03466 LysR substrate binding domain AFA_RS00895 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS00900 PF04290 AFA_RS00900 AFA_RS00905 PF06808 AFA_RS00905 AFA_RS00910 PF01436 NHL repeat AFA_RS00915 PF02405 AFA_RS00915 AFA_RS00915 PF13466 STAS domain AFA_RS00920 PF00005 ABC transporter AFA_RS00925 PF02470 AFA_RS00925 AFA_RS00930 PF03886 Protein of unknown function (DUF330) AFA_RS00940 PF13419 Haloacid dehalogenase-like hydrolase AFA_RS00945 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS00950 PF04290 AFA_RS00950 AFA_RS00955 PF06808 AFA_RS00955 AFA_RS00970 PF00501 AMP-binding enzyme AFA_RS00970 PF13193 AMP-binding enzyme C-terminal domain AFA_RS00975 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS00980 PF00023 Ankyrin repeat AFA_RS00985 PF00392 Bacterial regulatory proteins, gntR family AFA_RS00985 PF07729 FCD domain AFA_RS00990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS00990 PF03466 LysR substrate binding domain AFA_RS00995 PF01266 FAD dependent oxidoreductase AFA_RS01000 PF01757 AFA_RS01000 AFA_RS01005 PF02646 AFA_RS01005 AFA_RS01010 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_RS01010 PF00563 EAL domain AFA_RS01010 PF00990 GGDEF domain AFA_RS01010 PF08448 PAS fold AFA_RS01015 PF00708 Acylphosphatase AFA_RS01020 PF01380 SIS domain AFA_RS01025 PF16868 AFA_RS01025 AFA_RS01030 PF06808 AFA_RS01030 AFA_RS01030 PF11874 AFA_RS01030 AFA_RS01035 PF00849 RNA pseudouridylate synthase AFA_RS01040 PF00710 Asparaginase AFA_RS01045 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS01050 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS01055 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_RS01060 PF00005 ABC transporter AFA_RS01065 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFA_RS01065 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFA_RS01070 PF01168 Alanine racemase, N-terminal domain AFA_RS01075 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS01080 PF00027 Cyclic nucleotide-binding domain AFA_RS01080 PF13545 Crp-like helix-turn-helix domain AFA_RS01085 PF00501 AMP-binding enzyme AFA_RS01090 PF00005 ABC transporter AFA_RS01090 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_RS01095 PF02653 AFA_RS01095 AFA_RS01100 PF02653 AFA_RS01100 AFA_RS01105 PF13458 Periplasmic binding protein AFA_RS01110 PF00005 ABC transporter AFA_RS01115 PF00501 AMP-binding enzyme AFA_RS01115 PF14535 AMP-binding enzyme C-terminal domain AFA_RS01120 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_RS01130 PF00682 HMGL-like AFA_RS01135 PF02481 DNA recombination-mediator protein A AFA_RS01140 PF01327 Polypeptide deformylase AFA_RS01145 PF00551 Formyl transferase AFA_RS01145 PF02911 Formyl transferase, C-terminal domain AFA_RS01150 PF00892 EamA-like transporter family AFA_RS01155 PF01425 Amidase AFA_RS01160 PF11010 AFA_RS01160 AFA_RS01165 PF06808 AFA_RS01165 AFA_RS01170 PF04290 AFA_RS01170 AFA_RS01175 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS01180 PF07286 Protein of unknown function (DUF1445) AFA_RS01185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS01185 PF03466 LysR substrate binding domain AFA_RS01190 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFA_RS01195 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AFA_RS01200 PF00313 'Cold-shock' DNA-binding domain AFA_RS01205 PF00483 Nucleotidyl transferase AFA_RS01210 PF03309 Type III pantothenate kinase AFA_RS01215 PF02237 Biotin protein ligase C terminal domain AFA_RS01215 PF03099 Biotin/lipoate A/B protein ligase family AFA_RS01220 PF03959 Serine hydrolase (FSH1) AFA_RS01225 PF00768 D-alanyl-D-alanine carboxypeptidase AFA_RS01225 PF07943 Penicillin-binding protein 5, C-terminal domain AFA_RS01230 PF01063 Aminotransferase class IV AFA_RS01235 PF04359 Protein of unknown function (DUF493) AFA_RS01240 PF03099 Biotin/lipoate A/B protein ligase family AFA_RS01245 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS01250 PF04055 Radical SAM superfamily AFA_RS01250 PF16881 AFA_RS01250 AFA_RS01260 PF03167 Uracil DNA glycosylase superfamily AFA_RS01295 PF00027 Cyclic nucleotide-binding domain AFA_RS01295 PF13545 Crp-like helix-turn-helix domain AFA_RS01305 PF10006 AFA_RS01305 AFA_RS01310 PF01136 AFA_RS01310 AFA_RS01315 PF01136 AFA_RS01315 AFA_RS01320 PF02036 SCP-2 sterol transfer family AFA_RS01325 PF04055 Radical SAM superfamily AFA_RS01325 PF13353 4Fe-4S single cluster domain AFA_RS01330 PF13597 Anaerobic ribonucleoside-triphosphate reductase AFA_RS01335 PF13597 Anaerobic ribonucleoside-triphosphate reductase AFA_RS01340 PF01230 HIT domain AFA_RS01345 PF00218 Indole-3-glycerol phosphate synthase AFA_RS01350 PF00591 Glycosyl transferase family, a/b domain AFA_RS01350 PF02885 Glycosyl transferase family, helical bundle domain AFA_RS01355 PF00117 Glutamine amidotransferase class-I AFA_RS01360 PF00425 chorismate binding enzyme AFA_RS01360 PF04715 Anthranilate synthase component I, N terminal region AFA_RS01365 PF13419 Haloacid dehalogenase-like hydrolase AFA_RS01370 PF00563 EAL domain AFA_RS01370 PF00990 GGDEF domain AFA_RS01375 PF00834 Ribulose-phosphate 3 epimerase family AFA_RS01380 PF04379 Protein of unknown function (DUF525) AFA_RS01385 PF03562 MltA specific insert domain AFA_RS01385 PF06725 3D domain AFA_RS01390 PF01494 FAD binding domain AFA_RS01395 PF10411 Disulfide bond isomerase protein N-terminus AFA_RS01395 PF13098 Thioredoxin-like domain AFA_RS01400 PF00486 Transcriptional regulatory protein, C terminal AFA_RS01400 PF00563 EAL domain AFA_RS01405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_RS01405 PF17200 AFA_RS01405 AFA_RS01410 PF00756 Putative esterase AFA_RS01410 PF11806 Domain of unknown function (DUF3327) AFA_RS01415 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS01420 PF00857 Isochorismatase family AFA_RS01425 PF00425 chorismate binding enzyme AFA_RS01430 PF08450 SMP-30/Gluconolaconase/LRE-like region AFA_RS01435 PF05977 Transmembrane secretion effector AFA_RS01440 PF00501 AMP-binding enzyme AFA_RS01440 PF00550 Phosphopantetheine attachment site AFA_RS01440 PF00668 Condensation domain AFA_RS01440 PF00975 Thioesterase domain AFA_RS01440 PF13193 AMP-binding enzyme C-terminal domain AFA_RS01445 PF00550 Phosphopantetheine attachment site AFA_RS01450 PF00501 AMP-binding enzyme AFA_RS01450 PF13193 AMP-binding enzyme C-terminal domain AFA_RS01455 PF01648 4'-phosphopantetheinyl transferase superfamily AFA_RS01460 PF00005 ABC transporter AFA_RS01465 PF00005 ABC transporter AFA_RS01470 PF02653 AFA_RS01470 AFA_RS01475 PF02653 AFA_RS01475 AFA_RS01480 PF13458 Periplasmic binding protein AFA_RS01485 PF12802 MarR family AFA_RS01490 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS01495 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS01500 PF00005 ABC transporter AFA_RS01505 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AFA_RS01510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFA_RS01510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFA_RS01515 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFA_RS01515 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain AFA_RS01525 PF01497 Periplasmic binding protein AFA_RS01530 PF00005 ABC transporter AFA_RS01535 PF01032 FecCD transport family AFA_RS01540 PF12146 Putative lysophospholipase AFA_RS01545 PF00271 Helicase conserved C-terminal domain AFA_RS01545 PF12513 Mitochondrial degradasome RNA helicase subunit C terminal AFA_RS01550 PF07690 Major Facilitator Superfamily AFA_RS01555 PF04657 AFA_RS01555 AFA_RS01560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS01560 PF03466 LysR substrate binding domain AFA_RS01565 PF04773 FecR protein AFA_RS01565 PF16220 AFA_RS01565 AFA_RS01565 PF16344 AFA_RS01565 AFA_RS01570 PF00571 CBS domain AFA_RS01570 PF03471 Transporter associated domain AFA_RS01570 PF03741 AFA_RS01570 AFA_RS01575 PF04116 AFA_RS01575 AFA_RS01580 PF00487 AFA_RS01580 AFA_RS01585 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFA_RS01585 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFA_RS01585 PF14518 Iron-containing redox enzyme AFA_RS01595 PF01063 Aminotransferase class IV AFA_RS01600 PF04235 AFA_RS01600 AFA_RS01605 PF00440 Bacterial regulatory proteins, tetR family AFA_RS01605 PF13977 Bacterial transcriptional repressor AFA_RS01610 PF13673 Acetyltransferase (GNAT) domain AFA_RS01615 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFA_RS01620 PF01177 Asp/Glu/Hydantoin racemase AFA_RS01625 PF01613 Flavin reductase like domain AFA_RS01630 PF01546 Peptidase family M20/M25/M40 AFA_RS01635 PF01979 Amidohydrolase family AFA_RS01640 PF01979 Amidohydrolase family AFA_RS01645 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS01650 PF00005 ABC transporter AFA_RS01655 PF09084 NMT1/THI5 like AFA_RS01660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS01660 PF03466 LysR substrate binding domain AFA_RS01665 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_RS01670 PF00005 ABC transporter AFA_RS01675 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS01680 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS01685 PF00701 Dihydrodipicolinate synthetase family AFA_RS01690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFA_RS01690 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFA_RS01695 PF00171 Aldehyde dehydrogenase family AFA_RS01700 PF13557 AFA_RS01700 AFA_RS01705 PF06433 Methylamine dehydrogenase heavy chain (MADH) AFA_RS01710 PF07291 AFA_RS01710 AFA_RS01715 PF13098 Thioredoxin-like domain AFA_RS01720 PF02975 Methylamine dehydrogenase, L chain AFA_RS01730 PF12833 Helix-turn-helix domain AFA_RS01730 PF14525 AFA_RS01730 AFA_RS01740 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFA_RS01745 PF00270 DEAD/DEAH box helicase AFA_RS01745 PF00271 Helicase conserved C-terminal domain AFA_RS01750 PF00580 UvrD/REP helicase N-terminal domain AFA_RS01750 PF13361 UvrD-like helicase C-terminal domain AFA_RS01765 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS01765 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFA_RS01770 PF00310 Glutamine amidotransferases class-II AFA_RS01770 PF01493 GXGXG motif AFA_RS01770 PF01645 Conserved region in glutamate synthase AFA_RS01770 PF04898 Glutamate synthase central domain AFA_RS01775 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS01780 PF03060 Nitronate monooxygenase AFA_RS01785 PF02515 CoA-transferase family III AFA_RS01790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFA_RS01790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFA_RS01795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS01810 PF00593 TonB dependent receptor AFA_RS01810 PF07715 TonB-dependent Receptor Plug Domain AFA_RS01815 PF04262 Glutamate-cysteine ligase AFA_RS01825 PF00196 Bacterial regulatory proteins, luxR family AFA_RS01830 PF00561 alpha/beta hydrolase fold AFA_RS01835 PF07021 Methionine biosynthesis protein MetW AFA_RS01840 PF07690 Major Facilitator Superfamily AFA_RS01845 PF03458 AFA_RS01845 AFA_RS01850 PF04172 AFA_RS01850 AFA_RS01855 PF03788 AFA_RS01855 AFA_RS01860 PF01042 Endoribonuclease L-PSP AFA_RS01865 PF01042 Endoribonuclease L-PSP AFA_RS01870 PF09830 ATP adenylyltransferase AFA_RS01875 PF00072 Response regulator receiver domain AFA_RS01875 PF12833 Helix-turn-helix domain AFA_RS01885 PF00486 Transcriptional regulatory protein, C terminal AFA_RS01890 PF00474 Sodium:solute symporter family AFA_RS01900 PF01810 AFA_RS01900 AFA_RS01905 PF01411 tRNA synthetases class II (A) AFA_RS01905 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFA_RS01910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS01910 PF03466 LysR substrate binding domain AFA_RS01915 PF02627 Carboxymuconolactone decarboxylase family AFA_RS01920 PF00202 Aminotransferase class-III AFA_RS01925 PF01380 SIS domain AFA_RS01925 PF01418 Helix-turn-helix domain, rpiR family AFA_RS01930 PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase AFA_RS01935 PF01923 Cobalamin adenosyltransferase AFA_RS01940 PF00583 Acetyltransferase (GNAT) family AFA_RS01945 PF11604 Copper binding periplasmic protein CusF AFA_RS01950 PF00004 ATPase family associated with various cellular activities (AAA) AFA_RS01950 PF07724 AAA domain (Cdc48 subfamily) AFA_RS01955 PF00227 Proteasome subunit AFA_RS01965 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFA_RS01970 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFA_RS01970 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFA_RS01975 PF01475 Ferric uptake regulator family AFA_RS01980 PF00005 ABC transporter AFA_RS01985 PF00950 AFA_RS01985 AFA_RS01990 PF01297 Periplasmic solute binding protein family AFA_RS01995 PF00589 Phage integrase family AFA_RS01995 PF02899 Phage integrase, N-terminal SAM-like domain AFA_RS02000 PF04340 Protein of unknown function, DUF484 AFA_RS02005 PF01678 Diaminopimelate epimerase AFA_RS02010 PF03279 AFA_RS02010 AFA_RS02015 PF03279 AFA_RS02015 AFA_RS02020 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFA_RS02020 PF02772 S-adenosylmethionine synthetase, central domain AFA_RS02020 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFA_RS02025 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFA_RS02025 PF05221 S-adenosyl-L-homocysteine hydrolase AFA_RS02030 PF04020 AFA_RS02030 AFA_RS02035 PF02219 Methylenetetrahydrofolate reductase AFA_RS02040 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFA_RS02045 PF01464 Transglycosylase SLT domain AFA_RS02045 PF14718 Soluble lytic murein transglycosylase L domain AFA_RS02050 PF01743 Poly A polymerase head domain AFA_RS02050 PF12627 Probable RNA and SrmB- binding site of polymerase A AFA_RS02055 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase AFA_RS02065 PF13649 Methyltransferase domain AFA_RS02070 PF01925 AFA_RS02070 AFA_RS02075 PF00311 Phosphoenolpyruvate carboxylase AFA_RS02080 PF00920 Dehydratase family AFA_RS02085 PF12973 ChrR Cupin-like domain AFA_RS02090 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS02095 PF04290 AFA_RS02095 AFA_RS02100 PF06808 AFA_RS02100 AFA_RS02105 PF01425 Amidase AFA_RS02110 PF00392 Bacterial regulatory proteins, gntR family AFA_RS02110 PF07729 FCD domain AFA_RS02115 PF02540 NAD synthase AFA_RS02120 PF01614 Bacterial transcriptional regulator AFA_RS02120 PF09339 IclR helix-turn-helix domain AFA_RS02125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS02125 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS02125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_RS02130 PF02515 CoA-transferase family III AFA_RS02135 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS02140 PF07883 Cupin domain AFA_RS02145 PF01594 AFA_RS02145 AFA_RS02155 PF02384 N-6 DNA Methylase AFA_RS02155 PF12161 HsdM N-terminal domain AFA_RS02160 PF01420 Type I restriction modification DNA specificity domain AFA_RS02165 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFA_RS02165 PF04851 Type III restriction enzyme, res subunit AFA_RS02165 PF11867 AFA_RS02165 AFA_RS02170 PF01863 Protein of unknown function DUF45 AFA_RS02175 PF04471 Restriction endonuclease AFA_RS02180 PF02417 AFA_RS02180 AFA_RS02185 PF00884 Sulfatase AFA_RS02190 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS02195 PF01047 MarR family AFA_RS02200 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS02200 PF00175 Oxidoreductase NAD-binding domain AFA_RS02200 PF00970 Oxidoreductase FAD-binding domain AFA_RS02205 PF00583 Acetyltransferase (GNAT) family AFA_RS02210 PF01565 FAD binding domain AFA_RS02210 PF09330 D-lactate dehydrogenase, membrane binding AFA_RS02215 PF01070 FMN-dependent dehydrogenase AFA_RS02220 PF00392 Bacterial regulatory proteins, gntR family AFA_RS02220 PF07729 FCD domain AFA_RS02225 PF02652 AFA_RS02225 AFA_RS02235 PF00392 Bacterial regulatory proteins, gntR family AFA_RS02235 PF07702 UTRA domain AFA_RS02240 PF01037 AsnC family AFA_RS02240 PF13412 Winged helix-turn-helix DNA-binding AFA_RS02245 PF00266 Aminotransferase class-V AFA_RS02250 PF00324 Amino acid permease AFA_RS02255 PF07969 Amidohydrolase family AFA_RS02260 PF00455 AFA_RS02260 AFA_RS02260 PF08220 DeoR-like helix-turn-helix domain AFA_RS02265 PF00005 ABC transporter AFA_RS02265 PF08402 TOBE domain AFA_RS02270 PF13416 Bacterial extracellular solute-binding protein AFA_RS02275 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS02280 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS02285 PF00149 Calcineurin-like phosphoesterase AFA_RS02290 PF00593 TonB dependent receptor AFA_RS02295 PF03741 AFA_RS02295 AFA_RS02300 PF13616 PPIC-type PPIASE domain AFA_RS02310 PF02639 AFA_RS02310 AFA_RS02315 PF12643 AFA_RS02315 AFA_RS02320 PF01966 HD domain AFA_RS02325 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS02330 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFA_RS02330 PF13378 Enolase C-terminal domain-like AFA_RS02335 PF01479 S4 domain AFA_RS02340 PF07690 Major Facilitator Superfamily AFA_RS02345 PF00440 Bacterial regulatory proteins, tetR family AFA_RS02350 PF01794 AFA_RS02350 AFA_RS02350 PF08022 AFA_RS02350 AFA_RS02355 PF01425 Amidase AFA_RS02360 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS02365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS02365 PF03466 LysR substrate binding domain AFA_RS02370 PF12833 Helix-turn-helix domain AFA_RS02370 PF12852 Cupin AFA_RS02375 PF02627 Carboxymuconolactone decarboxylase family AFA_RS02380 PF08803 Putative mono-oxygenase ydhR AFA_RS02385 PF00892 EamA-like transporter family AFA_RS02390 PF00183 Hsp90 protein AFA_RS02390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS02395 PF00593 TonB dependent receptor AFA_RS02395 PF07715 TonB-dependent Receptor Plug Domain AFA_RS02400 PF13640 2OG-Fe(II) oxygenase superfamily AFA_RS02405 PF01070 FMN-dependent dehydrogenase AFA_RS02410 PF01510 N-acetylmuramoyl-L-alanine amidase AFA_RS02420 PF01578 AFA_RS02420 AFA_RS02425 PF00448 SRP54-type protein, GTPase domain AFA_RS02425 PF02881 SRP54-type protein, helical bundle domain AFA_RS02425 PF02978 Signal peptide binding domain AFA_RS02435 PF01476 LysM domain AFA_RS02435 PF04972 BON domain AFA_RS02440 PF02597 ThiS family AFA_RS02445 PF00561 alpha/beta hydrolase fold AFA_RS02450 PF02390 Putative methyltransferase AFA_RS02470 PF01904 Protein of unknown function DUF72 AFA_RS02480 PF01381 Helix-turn-helix AFA_RS02485 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS02490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS02490 PF03466 LysR substrate binding domain AFA_RS02495 PF01699 Sodium/calcium exchanger protein AFA_RS02500 PF00072 Response regulator receiver domain AFA_RS02500 PF12833 Helix-turn-helix domain AFA_RS02505 PF01323 DSBA-like thioredoxin domain AFA_RS02510 PF00083 Sugar (and other) transporter AFA_RS02515 PF00596 Class II Aldolase and Adducin N-terminal domain AFA_RS02520 PF08761 dUTPase AFA_RS02520 PF13302 Acetyltransferase (GNAT) domain AFA_RS02530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFA_RS02535 PF07883 Cupin domain AFA_RS02540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS02540 PF03466 LysR substrate binding domain AFA_RS02545 PF01545 Cation efflux family AFA_RS02545 PF16916 AFA_RS02545 AFA_RS02550 PF01588 Putative tRNA binding domain AFA_RS02550 PF09334 tRNA synthetases class I (M) AFA_RS02560 PF10609 ParA/MinD ATPase like AFA_RS02565 PF01103 Surface antigen AFA_RS02565 PF17243 AFA_RS02565 AFA_RS02570 PF04357 AFA_RS02570 AFA_RS02575 PF00692 dUTPase AFA_RS02580 PF01276 Orn/Lys/Arg decarboxylase, major domain AFA_RS02580 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AFA_RS02580 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AFA_RS02585 PF03486 HI0933-like protein AFA_RS02590 PF01597 Glycine cleavage H-protein AFA_RS02595 PF00186 Dihydrofolate reductase AFA_RS02600 PF00303 Thymidylate synthase AFA_RS02605 PF02566 OsmC-like protein AFA_RS02610 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_RS02615 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AFA_RS02620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS02625 PF02630 SCO1/SenC AFA_RS02635 PF03232 AFA_RS02635 AFA_RS02640 PF00224 Pyruvate kinase, barrel domain AFA_RS02640 PF02887 Pyruvate kinase, alpha/beta domain AFA_RS02645 PF03928 Domain of unknown function (DUF336) AFA_RS02650 PF05161 MOFRL family AFA_RS02650 PF13660 Domain of unknown function (DUF4147) AFA_RS02655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_RS02655 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFA_RS02660 PF01261 Xylose isomerase-like TIM barrel AFA_RS02665 PF00205 Thiamine pyrophosphate enzyme, central domain AFA_RS02665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_RS02665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFA_RS02670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS02670 PF03466 LysR substrate binding domain AFA_RS02680 PF00860 Permease family AFA_RS02685 PF01361 Tautomerase enzyme AFA_RS02690 PF00596 Class II Aldolase and Adducin N-terminal domain AFA_RS02695 PF04115 Ureidoglycolate hydrolase AFA_RS02700 PF09349 OHCU decarboxylase AFA_RS02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS02705 PF03466 LysR substrate binding domain AFA_RS02710 PF00953 Glycosyl transferase family 4 AFA_RS02715 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFA_RS02715 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFA_RS02715 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFA_RS02720 PF01370 NAD dependent epimerase/dehydratase family AFA_RS02725 PF03023 AFA_RS02725 AFA_RS02730 PF00534 Glycosyl transferases group 1 AFA_RS02730 PF13439 Glycosyltransferase Family 4 AFA_RS02735 PF00534 Glycosyl transferases group 1 AFA_RS02735 PF13439 Glycosyltransferase Family 4 AFA_RS02740 PF00534 Glycosyl transferases group 1 AFA_RS02740 PF13439 Glycosyltransferase Family 4 AFA_RS02740 PF13477 Glycosyl transferase 4-like AFA_RS02745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFA_RS02745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFA_RS02745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFA_RS02745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFA_RS02750 PF01565 FAD binding domain AFA_RS02750 PF02913 FAD linked oxidases, C-terminal domain AFA_RS02755 PF01569 PAP2 superfamily AFA_RS02760 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFA_RS02760 PF09298 Fumarylacetoacetase N-terminal AFA_RS02765 PF04209 homogentisate 1,2-dioxygenase AFA_RS02770 PF10932 AFA_RS02770 AFA_RS02775 PF01494 FAD binding domain AFA_RS02780 PF00753 Metallo-beta-lactamase superfamily AFA_RS02785 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFA_RS02785 PF06827 Zinc finger found in FPG and IleRS AFA_RS02785 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFA_RS02790 PF13424 Tetratricopeptide repeat AFA_RS02790 PF13432 Tetratricopeptide repeat AFA_RS02790 PF14559 Tetratricopeptide repeat AFA_RS02795 PF03550 Outer membrane lipoprotein LolB AFA_RS02800 PF00288 GHMP kinases N terminal domain AFA_RS02800 PF08544 GHMP kinases C terminal AFA_RS02810 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFA_RS02810 PF14572 Phosphoribosyl synthetase-associated domain AFA_RS02815 PF01386 Ribosomal L25p family AFA_RS02815 PF14693 Ribosomal protein TL5, C-terminal domain AFA_RS02820 PF01195 Peptidyl-tRNA hydrolase AFA_RS02825 PF02517 CAAX protease self-immunity AFA_RS02830 PF01926 50S ribosome-binding GTPase AFA_RS02830 PF06071 Protein of unknown function (DUF933) AFA_RS02835 PF03783 Curli production assembly/transport component CsgG AFA_RS02840 PF16068 AFA_RS02840 AFA_RS02845 PF05643 Putative bacterial lipoprotein (DUF799) AFA_RS02850 PF02311 AraC-like ligand binding domain AFA_RS02850 PF12833 Helix-turn-helix domain AFA_RS02855 PF00892 EamA-like transporter family AFA_RS02860 PF00005 ABC transporter AFA_RS02865 PF13743 Thioredoxin AFA_RS02870 PF00484 Carbonic anhydrase AFA_RS02875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS02875 PF03466 LysR substrate binding domain AFA_RS02880 PF04115 Ureidoglycolate hydrolase AFA_RS02885 PF00005 ABC transporter AFA_RS02890 PF03379 AFA_RS02890 AFA_RS02895 PF01578 AFA_RS02895 AFA_RS02900 PF04995 AFA_RS02900 AFA_RS02905 PF03100 CcmE AFA_RS02910 PF01578 AFA_RS02910 AFA_RS02910 PF16327 AFA_RS02910 AFA_RS02915 PF08534 Redoxin AFA_RS02920 PF03918 Cytochrome C biogenesis protein AFA_RS02930 PF02683 AFA_RS02930 AFA_RS02935 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS02940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFA_RS02940 PF02805 Metal binding domain of Ada AFA_RS02940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFA_RS02940 PF12833 Helix-turn-helix domain AFA_RS02945 PF00403 Heavy-metal-associated domain AFA_RS02950 PF08816 Inhibitor of vertebrate lysozyme (Ivy) AFA_RS02955 PF13458 Periplasmic binding protein AFA_RS02960 PF02653 AFA_RS02960 AFA_RS02965 PF02653 AFA_RS02965 AFA_RS02970 PF00005 ABC transporter AFA_RS02970 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_RS02975 PF00005 ABC transporter AFA_RS02980 PF00034 Cytochrome c AFA_RS02980 PF03150 Di-haem cytochrome c peroxidase AFA_RS02985 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFA_RS02985 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFA_RS02990 PF02082 Transcriptional regulator AFA_RS02995 PF01152 Bacterial-like globin AFA_RS03000 PF00535 Glycosyl transferase family 2 AFA_RS03005 PF13231 AFA_RS03005 AFA_RS03010 PF04138 AFA_RS03010 AFA_RS03015 PF04794 YdjC-like protein AFA_RS03020 PF04273 Putative phosphatase (DUF442) AFA_RS03025 PF00582 Universal stress protein family AFA_RS03030 PF11390 AFA_RS03030 AFA_RS03035 PF02634 FdhD/NarQ family AFA_RS03040 PF00384 Molybdopterin oxidoreductase AFA_RS03040 PF01568 Molydopterin dinucleotide binding domain AFA_RS03040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFA_RS03040 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFA_RS03040 PF13187 4Fe-4S dicluster domain AFA_RS03040 PF13510 2Fe-2S iron-sulfur cluster binding domain AFA_RS03045 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFA_RS03045 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFA_RS03050 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AFA_RS03055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS03055 PF12727 PBP superfamily domain AFA_RS03060 PF04055 Radical SAM superfamily AFA_RS03060 PF06463 Molybdenum Cofactor Synthesis C AFA_RS03060 PF13353 4Fe-4S single cluster domain AFA_RS03065 PF12804 MobA-like NTP transferase domain AFA_RS03070 PF00994 Probable molybdopterin binding domain AFA_RS03070 PF03453 MoeA N-terminal region (domain I and II) AFA_RS03070 PF03454 MoeA C-terminal region (domain IV) AFA_RS03075 PF00994 Probable molybdopterin binding domain AFA_RS03080 PF02391 MoaE protein AFA_RS03085 PF02597 ThiS family AFA_RS03090 PF01967 MoaC family AFA_RS03095 PF00072 Response regulator receiver domain AFA_RS03095 PF00196 Bacterial regulatory proteins, luxR family AFA_RS03100 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS03100 PF00989 PAS fold AFA_RS03100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS03105 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS03110 PF04290 AFA_RS03110 AFA_RS03115 PF06808 AFA_RS03115 AFA_RS03120 PF08534 Redoxin AFA_RS03125 PF00083 Sugar (and other) transporter AFA_RS03125 PF07690 Major Facilitator Superfamily AFA_RS03135 PF04055 Radical SAM superfamily AFA_RS03135 PF06968 Biotin and Thiamin Synthesis associated domain AFA_RS03140 PF03061 Thioesterase superfamily AFA_RS03145 PF11697 AFA_RS03145 AFA_RS03150 PF00873 AcrB/AcrD/AcrF family AFA_RS03155 PF16576 AFA_RS03155 AFA_RS03160 PF00440 Bacterial regulatory proteins, tetR family AFA_RS03195 PF00563 EAL domain AFA_RS03195 PF00990 GGDEF domain AFA_RS03195 PF13426 PAS domain AFA_RS03200 PF00795 Carbon-nitrogen hydrolase AFA_RS03205 PF00571 CBS domain AFA_RS03205 PF03471 Transporter associated domain AFA_RS03210 PF02130 Uncharacterized protein family UPF0054 AFA_RS03215 PF02562 PhoH-like protein AFA_RS03220 PF00919 Uncharacterized protein family UPF0004 AFA_RS03220 PF01938 TRAM domain AFA_RS03220 PF04055 Radical SAM superfamily AFA_RS03225 PF11903 AFA_RS03225 AFA_RS03230 PF00557 Metallopeptidase family M24 AFA_RS03235 PF02355 Protein export membrane protein AFA_RS03235 PF07549 SecD/SecF GG Motif AFA_RS03240 PF02355 Protein export membrane protein AFA_RS03240 PF07549 SecD/SecF GG Motif AFA_RS03240 PF13721 SecD export protein N-terminal TM region AFA_RS03245 PF02699 Preprotein translocase subunit AFA_RS03250 PF01702 Queuine tRNA-ribosyltransferase AFA_RS03255 PF02547 Queuosine biosynthesis protein AFA_RS03260 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AFA_RS03265 PF14681 Uracil phosphoribosyltransferase AFA_RS03275 PF05957 AFA_RS03275 AFA_RS03280 PF07332 AFA_RS03280 AFA_RS03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS03290 PF03466 LysR substrate binding domain AFA_RS03295 PF00355 Rieske [2Fe-2S] domain AFA_RS03295 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_RS03300 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS03300 PF00175 Oxidoreductase NAD-binding domain AFA_RS03300 PF00970 Oxidoreductase FAD-binding domain AFA_RS03305 PF01370 NAD dependent epimerase/dehydratase family AFA_RS03315 PF06545 Protein of unknown function (DUF1116) AFA_RS03320 PF01425 Amidase AFA_RS03330 PF00083 Sugar (and other) transporter AFA_RS03335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS03335 PF03466 LysR substrate binding domain AFA_RS03340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_RS03345 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AFA_RS03350 PF01464 Transglycosylase SLT domain AFA_RS03355 PF00155 Aminotransferase class I and II AFA_RS03365 PF00390 Malic enzyme, N-terminal domain AFA_RS03365 PF01515 Phosphate acetyl/butaryl transferase AFA_RS03365 PF03949 Malic enzyme, NAD binding domain AFA_RS03370 PF01734 Patatin-like phospholipase AFA_RS03375 PF01337 Barstar (barnase inhibitor) AFA_RS03380 PF04452 RNA methyltransferase AFA_RS03385 PF00456 Transketolase, thiamine diphosphate binding domain AFA_RS03385 PF02779 Transketolase, pyrimidine binding domain AFA_RS03385 PF02780 Transketolase, C-terminal domain AFA_RS03390 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFA_RS03390 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFA_RS03395 PF00162 Phosphoglycerate kinase AFA_RS03400 PF15919 AFA_RS03400 AFA_RS03405 PF01370 NAD dependent epimerase/dehydratase family AFA_RS03410 PF00171 Aldehyde dehydrogenase family AFA_RS03415 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS03420 PF00994 Probable molybdopterin binding domain AFA_RS03425 PF01116 Fructose-bisphosphate aldolase class-II AFA_RS03430 PF01259 SAICAR synthetase AFA_RS03435 PF00731 AIR carboxylase AFA_RS03440 PF02222 ATP-grasp domain AFA_RS03445 PF01300 Telomere recombination AFA_RS03445 PF03481 Putative GTP-binding controlling metal-binding AFA_RS03450 PF12697 Alpha/beta hydrolase family AFA_RS03460 PF01575 MaoC like domain AFA_RS03465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS03465 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS03465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_RS03470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS03470 PF03466 LysR substrate binding domain AFA_RS03475 PF01019 Gamma-glutamyltranspeptidase AFA_RS03480 PF00551 Formyl transferase AFA_RS03485 PF01266 FAD dependent oxidoreductase AFA_RS03490 PF01613 Flavin reductase like domain AFA_RS03495 PF01243 Pyridoxamine 5'-phosphate oxidase AFA_RS03495 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AFA_RS03500 PF04752 AFA_RS03500 AFA_RS03505 PF00899 ThiF family AFA_RS03510 PF01063 Aminotransferase class IV AFA_RS03515 PF00425 chorismate binding enzyme AFA_RS03520 PF00005 ABC transporter AFA_RS03525 PF00535 Glycosyl transferase family 2 AFA_RS03535 PF00005 ABC transporter AFA_RS03535 PF12848 ABC transporter AFA_RS03540 PF00857 Isochorismatase family AFA_RS03545 PF05433 AFA_RS03545 AFA_RS03550 PF00355 Rieske [2Fe-2S] domain AFA_RS03550 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_RS03555 PF03776 Septum formation topological specificity factor MinE AFA_RS03560 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFA_RS03565 PF03775 Septum formation inhibitor MinC, C-terminal domain AFA_RS03565 PF05209 Septum formation inhibitor MinC, N-terminal domain AFA_RS03570 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFA_RS03570 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AFA_RS03575 PF01654 AFA_RS03575 AFA_RS03580 PF02322 AFA_RS03580 AFA_RS03585 PF00571 CBS domain AFA_RS03585 PF00654 Voltage gated chloride channel AFA_RS03595 PF00270 DEAD/DEAH box helicase AFA_RS03595 PF00271 Helicase conserved C-terminal domain AFA_RS03595 PF00570 HRDC domain AFA_RS03595 PF09382 RQC domain AFA_RS03595 PF16124 AFA_RS03595 AFA_RS03600 PF00317 Ribonucleotide reductase, all-alpha domain AFA_RS03600 PF02867 Ribonucleotide reductase, barrel domain AFA_RS03600 PF03477 ATP cone domain AFA_RS03605 PF00268 Ribonucleotide reductase, small chain AFA_RS03610 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS03615 PF00005 ABC transporter AFA_RS03615 PF12848 ABC transporter AFA_RS03615 PF16326 AFA_RS03615 AFA_RS03625 PF02381 MraZ protein AFA_RS03630 PF01795 MraW methylase family AFA_RS03635 PF04999 AFA_RS03635 AFA_RS03640 PF00905 Penicillin binding protein transpeptidase domain AFA_RS03640 PF03717 Penicillin-binding Protein dimerisation domain AFA_RS03645 PF01225 Mur ligase family, catalytic domain AFA_RS03645 PF02875 Mur ligase family, glutamate ligase domain AFA_RS03645 PF08245 Mur ligase middle domain AFA_RS03650 PF00953 Glycosyl transferase family 4 AFA_RS03650 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFA_RS03655 PF02875 Mur ligase family, glutamate ligase domain AFA_RS03655 PF08245 Mur ligase middle domain AFA_RS03660 PF01098 AFA_RS03660 AFA_RS03665 PF03033 Glycosyltransferase family 28 N-terminal domain AFA_RS03665 PF04101 Glycosyltransferase family 28 C-terminal domain AFA_RS03670 PF01225 Mur ligase family, catalytic domain AFA_RS03670 PF02875 Mur ligase family, glutamate ligase domain AFA_RS03670 PF08245 Mur ligase middle domain AFA_RS03675 PF01820 D-ala D-ala ligase N-terminus AFA_RS03675 PF07478 D-ala D-ala ligase C-terminus AFA_RS03680 PF03799 Cell division protein FtsQ AFA_RS03680 PF08478 POTRA domain, FtsQ-type AFA_RS03685 PF02491 SHS2 domain inserted in FTSA AFA_RS03685 PF14450 Cell division protein FtsA AFA_RS03690 PF00091 Tubulin/FtsZ family, GTPase domain AFA_RS03690 PF12327 FtsZ family, C-terminal domain AFA_RS03695 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AFA_RS03700 PF05258 AFA_RS03700 AFA_RS03705 PF01551 Peptidase family M23 AFA_RS03710 PF01043 SecA preprotein cross-linking domain AFA_RS03710 PF02810 SEC-C motif AFA_RS03710 PF07516 SecA Wing and Scaffold domain AFA_RS03710 PF07517 SecA DEAD-like domain AFA_RS03715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_RS03715 PF09130 Domain of unknown function (DUF1932) AFA_RS03720 PF00571 CBS domain AFA_RS03720 PF01769 Divalent cation transporter AFA_RS03720 PF03448 MgtE intracellular N domain AFA_RS03725 PF03061 Thioesterase superfamily AFA_RS03730 PF01546 Peptidase family M20/M25/M40 AFA_RS03730 PF07687 Peptidase dimerisation domain AFA_RS03735 PF00501 AMP-binding enzyme AFA_RS03735 PF13193 AMP-binding enzyme C-terminal domain AFA_RS03740 PF00459 Inositol monophosphatase family AFA_RS03745 PF01266 FAD dependent oxidoreductase AFA_RS03745 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AFA_RS03750 PF01055 Glycosyl hydrolases family 31 AFA_RS03760 PF00005 ABC transporter AFA_RS03760 PF09383 NIL domain AFA_RS03765 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS03770 PF03180 NLPA lipoprotein AFA_RS03775 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_RS03780 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS03785 PF00005 ABC transporter AFA_RS03795 PF00483 Nucleotidyl transferase AFA_RS03800 PF01636 Phosphotransferase enzyme family AFA_RS03805 PF04453 Organic solvent tolerance protein AFA_RS03810 PF00639 PPIC-type PPIASE domain AFA_RS03810 PF09312 SurA N-terminal domain AFA_RS03810 PF13616 PPIC-type PPIASE domain AFA_RS03815 PF00398 Ribosomal RNA adenine dimethylase AFA_RS03820 PF07670 Nucleoside recognition AFA_RS03825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_RS03830 PF01863 Protein of unknown function DUF45 AFA_RS03835 PF01553 Acyltransferase AFA_RS03840 PF13242 HAD-hyrolase-like AFA_RS03845 PF02092 AFA_RS03845 AFA_RS03845 PF05746 DALR anticodon binding domain AFA_RS03850 PF02091 Glycyl-tRNA synthetase alpha subunit AFA_RS03860 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS03865 PF05681 AFA_RS03865 AFA_RS03865 PF05683 Fumarase C-terminus AFA_RS03870 PF00440 Bacterial regulatory proteins, tetR family AFA_RS03875 PF07690 Major Facilitator Superfamily AFA_RS03880 PF07690 Major Facilitator Superfamily AFA_RS03890 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFA_RS03895 PF01743 Poly A polymerase head domain AFA_RS03895 PF12626 Polymerase A arginine-rich C-terminus AFA_RS03895 PF12627 Probable RNA and SrmB- binding site of polymerase A AFA_RS03900 PF12710 haloacid dehalogenase-like hydrolase AFA_RS03905 PF00308 Bacterial dnaA protein AFA_RS03910 PF00586 AIR synthase related protein, N-terminal domain AFA_RS03910 PF02769 AIR synthase related protein, C-terminal domain AFA_RS03915 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFA_RS03920 PF01715 IPP transferase AFA_RS03925 PF01119 DNA mismatch repair protein, C-terminal domain AFA_RS03925 PF08676 MutL C terminal dimerisation domain AFA_RS03925 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS03930 PF09335 AFA_RS03930 AFA_RS03935 PF02424 ApbE family AFA_RS03940 PF00175 Oxidoreductase NAD-binding domain AFA_RS03940 PF00258 Flavodoxin AFA_RS03940 PF00970 Oxidoreductase FAD-binding domain AFA_RS03940 PF03929 AFA_RS03940 AFA_RS03945 PF10029 AFA_RS03945 AFA_RS03950 PF13670 AFA_RS03950 AFA_RS03955 PF01520 N-acetylmuramoyl-L-alanine amidase AFA_RS03955 PF11741 AMIN domain AFA_RS03960 PF02367 Uncharacterised P-loop hydrolase UPF0079 AFA_RS03965 PF03547 AFA_RS03965 AFA_RS03970 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS03975 PF00390 Malic enzyme, N-terminal domain AFA_RS03975 PF01515 Phosphate acetyl/butaryl transferase AFA_RS03975 PF03949 Malic enzyme, NAD binding domain AFA_RS03980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS03980 PF03466 LysR substrate binding domain AFA_RS03985 PF00171 Aldehyde dehydrogenase family AFA_RS03990 PF00701 Dihydrodipicolinate synthetase family AFA_RS03995 PF00392 Bacterial regulatory proteins, gntR family AFA_RS03995 PF07729 FCD domain AFA_RS04000 PF06808 AFA_RS04000 AFA_RS04005 PF04290 AFA_RS04005 AFA_RS04010 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS04020 PF05232 AFA_RS04020 AFA_RS04025 PF01638 HxlR-like helix-turn-helix AFA_RS04030 PF13460 NADH(P)-binding AFA_RS04035 PF07366 SnoaL-like polyketide cyclase AFA_RS04040 PF07690 Major Facilitator Superfamily AFA_RS04045 PF04073 Aminoacyl-tRNA editing domain AFA_RS04050 PF00589 Phage integrase family AFA_RS04050 PF02899 Phage integrase, N-terminal SAM-like domain AFA_RS04055 PF13531 Bacterial extracellular solute-binding protein AFA_RS04060 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS04065 PF00005 ABC transporter AFA_RS04070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS04070 PF03459 TOBE domain AFA_RS04080 PF00580 UvrD/REP helicase N-terminal domain AFA_RS04080 PF12705 PD-(D/E)XK nuclease superfamily AFA_RS04080 PF13361 UvrD-like helicase C-terminal domain AFA_RS04090 PF12169 DNA polymerase III subunits gamma and tau domain III AFA_RS04090 PF12170 DNA polymerase III tau subunit V interacting with alpha AFA_RS04090 PF13177 DNA polymerase III, delta subunit AFA_RS04095 PF02575 YbaB/EbfC DNA-binding family AFA_RS04100 PF02132 RecR protein AFA_RS04100 PF13662 Toprim domain AFA_RS04105 PF13379 NMT1-like family AFA_RS04110 PF00005 ABC transporter AFA_RS04115 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS04120 PF00923 Transaldolase AFA_RS04125 PF00117 Glutamine amidotransferase class-I AFA_RS04125 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFA_RS04130 PF02142 MGS-like domain AFA_RS04130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFA_RS04130 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFA_RS04135 PF05118 Aspartyl/Asparaginyl beta-hydroxylase AFA_RS04140 PF00106 short chain dehydrogenase AFA_RS04145 PF00300 Histidine phosphatase superfamily (branch 1) AFA_RS04150 PF00860 Permease family AFA_RS04155 PF01272 Transcription elongation factor, GreA/GreB, C-term AFA_RS04155 PF03449 Transcription elongation factor, N-terminal AFA_RS04160 PF01985 CRS1 / YhbY (CRM) domain AFA_RS04165 PF01728 FtsJ-like methyltransferase AFA_RS04170 PF00004 ATPase family associated with various cellular activities (AAA) AFA_RS04170 PF01434 Peptidase family M41 AFA_RS04170 PF06480 FtsH Extracellular AFA_RS04175 PF00809 Pterin binding enzyme AFA_RS04180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFA_RS04180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFA_RS04180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFA_RS04180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFA_RS04185 PF13444 Acetyltransferase (GNAT) domain AFA_RS04190 PF02541 Ppx/GppA phosphatase family AFA_RS04195 PF02503 Polyphosphate kinase middle domain AFA_RS04195 PF13089 Polyphosphate kinase N-terminal domain AFA_RS04195 PF13090 Polyphosphate kinase C-terminal domain AFA_RS04200 PF12849 PBP superfamily domain AFA_RS04205 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS04210 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS04215 PF00005 ABC transporter AFA_RS04220 PF00501 AMP-binding enzyme AFA_RS04220 PF13193 AMP-binding enzyme C-terminal domain AFA_RS04230 PF03413 Peptidase propeptide and YPEB domain AFA_RS04235 PF00072 Response regulator receiver domain AFA_RS04235 PF00486 Transcriptional regulatory protein, C terminal AFA_RS04240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS04245 PF07681 AFA_RS04245 AFA_RS04250 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_RS04255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS04255 PF03466 LysR substrate binding domain AFA_RS04260 PF05232 AFA_RS04260 AFA_RS04275 PF00884 Sulfatase AFA_RS04280 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFA_RS04280 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_RS04285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS04285 PF03466 LysR substrate binding domain AFA_RS04290 PF02253 Phospholipase A1 AFA_RS04300 PF04341 AFA_RS04300 AFA_RS04305 PF00474 Sodium:solute symporter family AFA_RS04310 PF07848 PaaX-like protein AFA_RS04310 PF08223 PaaX-like protein C-terminal domain AFA_RS04315 PF13091 PLD-like domain AFA_RS04315 PF13396 AFA_RS04315 AFA_RS04330 PF01300 Telomere recombination AFA_RS04340 PF00701 Dihydrodipicolinate synthetase family AFA_RS04345 PF06804 NlpB/DapX lipoprotein AFA_RS04350 PF08281 Sigma-70, region 4 AFA_RS04355 PF16220 AFA_RS04355 AFA_RS04360 PF13500 AAA domain AFA_RS04365 PF00202 Aminotransferase class-III AFA_RS04370 PF00155 Aminotransferase class I and II AFA_RS04375 PF00067 Cytochrome P450 AFA_RS04380 PF03594 AFA_RS04380 AFA_RS04385 PF08007 Cupin superfamily protein AFA_RS04390 PF00488 MutS domain V AFA_RS04390 PF01624 MutS domain I AFA_RS04390 PF05188 MutS domain II AFA_RS04390 PF05190 MutS family domain IV AFA_RS04390 PF05192 MutS domain III AFA_RS04400 PF00593 TonB dependent receptor AFA_RS04400 PF07715 TonB-dependent Receptor Plug Domain AFA_RS04405 PF16576 AFA_RS04405 AFA_RS04410 PF00005 ABC transporter AFA_RS04410 PF02687 AFA_RS04410 AFA_RS04410 PF12704 MacB-like periplasmic core domain AFA_RS04415 PF02321 Outer membrane efflux protein AFA_RS04420 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFA_RS04425 PF00005 ABC transporter AFA_RS04425 PF00664 ABC transporter transmembrane region AFA_RS04430 PF01019 Gamma-glutamyltranspeptidase AFA_RS04435 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS04440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS04440 PF03466 LysR substrate binding domain AFA_RS04445 PF00296 Luciferase-like monooxygenase AFA_RS04450 PF13649 Methyltransferase domain AFA_RS04455 PF00924 Mechanosensitive ion channel AFA_RS04460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS04460 PF03466 LysR substrate binding domain AFA_RS04465 PF00698 Acyl transferase domain AFA_RS04470 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AFA_RS04475 PF10620 AFA_RS04475 AFA_RS04480 PF06833 Malonate decarboxylase gamma subunit (MdcE) AFA_RS04485 PF01039 Carboxyl transferase domain AFA_RS04490 PF06857 AFA_RS04490 AFA_RS04495 PF16957 AFA_RS04495 AFA_RS04500 PF01425 Amidase AFA_RS04505 PF02667 AFA_RS04505 AFA_RS04510 PF01614 Bacterial transcriptional regulator AFA_RS04510 PF09339 IclR helix-turn-helix domain AFA_RS04515 PF00588 SpoU rRNA Methylase family AFA_RS04520 PF00459 Inositol monophosphatase family AFA_RS04525 PF00571 CBS domain AFA_RS04525 PF03471 Transporter associated domain AFA_RS04525 PF03741 AFA_RS04525 AFA_RS04530 PF02673 AFA_RS04530 AFA_RS04535 PF00149 Calcineurin-like phosphoesterase AFA_RS04540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFA_RS04545 PF13181 Tetratricopeptide repeat AFA_RS04550 PF01406 tRNA synthetases class I (C) catalytic domain AFA_RS04550 PF09190 DALR domain AFA_RS04555 PF00730 HhH-GPD superfamily base excision DNA repair protein AFA_RS04560 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AFA_RS04565 PF01171 PP-loop family AFA_RS04565 PF09179 TilS substrate binding domain AFA_RS04570 PF00696 Amino acid kinase family AFA_RS04570 PF13840 ACT domain AFA_RS04585 PF01145 SPFH domain / Band 7 family AFA_RS04595 PF12833 Helix-turn-helix domain AFA_RS04595 PF14525 AFA_RS04595 AFA_RS04600 PF00795 Carbon-nitrogen hydrolase AFA_RS04610 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_RS04620 PF13343 Bacterial extracellular solute-binding protein AFA_RS04625 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS04630 PF00005 ABC transporter AFA_RS04630 PF08402 TOBE domain AFA_RS04635 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFA_RS04635 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AFA_RS04640 PF12769 Domain of unknown function (DUF3814) AFA_RS04645 PF02233 NAD(P) transhydrogenase beta subunit AFA_RS04670 PF01070 FMN-dependent dehydrogenase AFA_RS04675 PF13409 Glutathione S-transferase, N-terminal domain AFA_RS04675 PF13410 Glutathione S-transferase, C-terminal domain AFA_RS04680 PF03358 NADPH-dependent FMN reductase AFA_RS04685 PF03061 Thioesterase superfamily AFA_RS04690 PF11720 Peptidase inhibitor I78 family AFA_RS04695 PF02245 Methylpurine-DNA glycosylase (MPG) AFA_RS04700 PF00962 Adenosine/AMP deaminase AFA_RS04705 PF04241 AFA_RS04705 AFA_RS04710 PF01544 CorA-like Mg2+ transporter protein AFA_RS04715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS04715 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS04725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFA_RS04730 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS04735 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS04740 PF00005 ABC transporter AFA_RS04740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFA_RS04745 PF06676 AFA_RS04745 AFA_RS04750 PF00158 Sigma-54 interaction domain AFA_RS04750 PF01590 GAF domain AFA_RS04750 PF02954 Bacterial regulatory protein, Fis family AFA_RS04755 PF00171 Aldehyde dehydrogenase family AFA_RS04760 PF00465 Iron-containing alcohol dehydrogenase AFA_RS04765 PF01132 Elongation factor P (EF-P) OB domain AFA_RS04765 PF08207 Elongation factor P (EF-P) KOW-like domain AFA_RS04765 PF09285 Elongation factor P, C-terminal AFA_RS04770 PF10093 AFA_RS04770 AFA_RS04775 PF11062 AFA_RS04775 AFA_RS04780 PF06808 AFA_RS04780 AFA_RS04785 PF04290 AFA_RS04785 AFA_RS04790 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS04795 PF00330 Aconitase family (aconitate hydratase) AFA_RS04795 PF06434 Aconitate hydratase 2 N-terminus AFA_RS04795 PF11791 Aconitate B N-terminal domain AFA_RS04800 PF14542 GCN5-related N-acetyl-transferase AFA_RS04810 PF00285 Citrate synthase AFA_RS04815 PF13714 Phosphoenolpyruvate phosphomutase AFA_RS04820 PF00158 Sigma-54 interaction domain AFA_RS04820 PF00989 PAS fold AFA_RS04820 PF02954 Bacterial regulatory protein, Fis family AFA_RS04820 PF06506 Propionate catabolism activator AFA_RS04825 PF07690 Major Facilitator Superfamily AFA_RS04830 PF13560 Helix-turn-helix domain AFA_RS04835 PF00056 lactate/malate dehydrogenase, NAD binding domain AFA_RS04835 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFA_RS04840 PF00392 Bacterial regulatory proteins, gntR family AFA_RS04840 PF07702 UTRA domain AFA_RS04845 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFA_RS04850 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFA_RS04855 PF00890 FAD binding domain AFA_RS04855 PF02910 Fumarate reductase flavoprotein C-term AFA_RS04860 PF13085 2Fe-2S iron-sulfur cluster binding domain AFA_RS04860 PF13534 4Fe-4S dicluster domain AFA_RS04865 PF03937 Flavinator of succinate dehydrogenase AFA_RS04870 PF00285 Citrate synthase AFA_RS04875 PF00392 Bacterial regulatory proteins, gntR family AFA_RS04875 PF07729 FCD domain AFA_RS04880 PF02652 AFA_RS04880 AFA_RS04885 PF00390 Malic enzyme, N-terminal domain AFA_RS04885 PF01515 Phosphate acetyl/butaryl transferase AFA_RS04885 PF03949 Malic enzyme, NAD binding domain AFA_RS04890 PF00676 Dehydrogenase E1 component AFA_RS04890 PF02779 Transketolase, pyrimidine binding domain AFA_RS04890 PF16078 AFA_RS04890 AFA_RS04890 PF16870 AFA_RS04890 AFA_RS04895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFA_RS04895 PF00364 Biotin-requiring enzyme AFA_RS04895 PF02817 e3 binding domain AFA_RS04900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFA_RS04900 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS04905 PF03969 AFG1-like ATPase AFA_RS04910 PF00579 tRNA synthetases class I (W and Y) AFA_RS04915 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_RS04925 PF00575 S1 RNA binding domain AFA_RS04925 PF09371 Tex-like protein N-terminal domain AFA_RS04925 PF12836 Helix-hairpin-helix motif AFA_RS04925 PF16921 AFA_RS04925 AFA_RS04930 PF13307 Helicase C-terminal domain AFA_RS04935 PF00916 AFA_RS04935 AFA_RS04940 PF06249 Ethanolamine utilisation protein EutQ AFA_RS04945 PF01266 FAD dependent oxidoreductase AFA_RS04950 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS04955 PF04290 AFA_RS04955 AFA_RS04960 PF06808 AFA_RS04960 AFA_RS04965 PF00440 Bacterial regulatory proteins, tetR family AFA_RS04970 PF13525 Outer membrane lipoprotein AFA_RS04975 PF00849 RNA pseudouridylate synthase AFA_RS04975 PF01479 S4 domain AFA_RS04980 PF02578 Multi-copper polyphenol oxidoreductase laccase AFA_RS04985 PF07167 AFA_RS04985 AFA_RS04990 PF00106 short chain dehydrogenase AFA_RS04995 PF05233 AFA_RS04995 AFA_RS04995 PF07879 AFA_RS04995 AFA_RS05000 PF04339 AFA_RS05000 AFA_RS05015 PF10721 AFA_RS05015 AFA_RS05020 PF00959 Phage lysozyme AFA_RS05050 PF01464 Transglycosylase SLT domain AFA_RS05080 PF04079 Putative transcriptional regulators (Ypuh-like) AFA_RS05085 PF00849 RNA pseudouridylate synthase AFA_RS05085 PF01479 S4 domain AFA_RS05090 PF02576 Uncharacterised BCR, YhbC family COG0779 AFA_RS05090 PF17384 AFA_RS05090 AFA_RS05095 PF00575 S1 RNA binding domain AFA_RS05095 PF08529 NusA N-terminal domain AFA_RS05095 PF13184 NusA-like KH domain AFA_RS05095 PF14520 Helix-hairpin-helix domain AFA_RS05100 PF00009 Elongation factor Tu GTP binding domain AFA_RS05100 PF04760 Translation initiation factor IF-2, N-terminal region AFA_RS05100 PF08364 AFA_RS05100 AFA_RS05100 PF11987 Translation-initiation factor 2 AFA_RS05105 PF02033 Ribosome-binding factor A AFA_RS05110 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFA_RS05110 PF16198 AFA_RS05110 AFA_RS05115 PF00009 Elongation factor Tu GTP binding domain AFA_RS05115 PF00679 Elongation factor G C-terminus AFA_RS05115 PF03144 Elongation factor Tu domain 2 AFA_RS05120 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS05125 PF07849 AFA_RS05125 AFA_RS05130 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS05135 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS05140 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_RS05145 PF03641 Possible lysine decarboxylase AFA_RS05150 PF00476 DNA polymerase family A AFA_RS05150 PF01367 5'-3' exonuclease, C-terminal SAM fold AFA_RS05150 PF01612 3'-5' exonuclease AFA_RS05150 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFA_RS05155 PF02690 AFA_RS05155 AFA_RS05160 PF01435 Peptidase family M48 AFA_RS05165 PF00892 EamA-like transporter family AFA_RS05170 PF00581 Rhodanese-like domain AFA_RS05175 PF02609 Exonuclease VII small subunit AFA_RS05180 PF00348 Polyprenyl synthetase AFA_RS05185 PF02779 Transketolase, pyrimidine binding domain AFA_RS05185 PF02780 Transketolase, C-terminal domain AFA_RS05185 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFA_RS05190 PF02649 Type I GTP cyclohydrolase folE2 AFA_RS05195 PF01250 Ribosomal protein S6 AFA_RS05205 PF01084 Ribosomal protein S18 AFA_RS05210 PF01281 Ribosomal protein L9, N-terminal domain AFA_RS05210 PF03948 Ribosomal protein L9, C-terminal domain AFA_RS05215 PF00772 DnaB-like helicase N terminal domain AFA_RS05215 PF03796 DnaB-like helicase C terminal domain AFA_RS05220 PF13593 SBF-like CPA transporter family (DUF4137) AFA_RS05225 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AFA_RS05230 PF02562 PhoH-like protein AFA_RS05230 PF13638 PIN domain AFA_RS05235 PF00578 AhpC/TSA family AFA_RS05240 PF04430 Protein of unknown function (DUF498/DUF598) AFA_RS05245 PF00155 Aminotransferase class I and II AFA_RS05250 PF00742 Homoserine dehydrogenase AFA_RS05250 PF01842 ACT domain AFA_RS05250 PF03447 Homoserine dehydrogenase, NAD binding domain AFA_RS05255 PF00291 Pyridoxal-phosphate dependent enzyme AFA_RS05255 PF14821 Threonine synthase N terminus AFA_RS05265 PF13302 Acetyltransferase (GNAT) domain AFA_RS05270 PF01593 Flavin containing amine oxidoreductase AFA_RS05275 PF00494 Squalene/phytoene synthase AFA_RS05280 PF00494 Squalene/phytoene synthase AFA_RS05285 PF00842 Alanine racemase, C-terminal domain AFA_RS05285 PF01168 Alanine racemase, N-terminal domain AFA_RS05290 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS05295 PF05362 Lon protease (S16) C-terminal proteolytic domain AFA_RS05295 PF13481 AAA domain AFA_RS05300 PF01925 AFA_RS05300 AFA_RS05305 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family AFA_RS05310 PF13416 Bacterial extracellular solute-binding protein AFA_RS05315 PF00005 ABC transporter AFA_RS05315 PF08402 TOBE domain AFA_RS05320 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS05325 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS05330 PF03960 ArsC family AFA_RS05335 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AFA_RS05340 PF01895 PhoU domain AFA_RS05345 PF00563 EAL domain AFA_RS05350 PF04362 Bacterial Fe(2+) trafficking AFA_RS05355 PF00696 Amino acid kinase family AFA_RS05355 PF13508 Acetyltransferase (GNAT) domain AFA_RS05360 PF00270 DEAD/DEAH box helicase AFA_RS05360 PF00271 Helicase conserved C-terminal domain AFA_RS05360 PF04408 Helicase associated domain (HA2) AFA_RS05360 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AFA_RS05360 PF11898 AFA_RS05360 AFA_RS05365 PF01336 OB-fold nucleic acid binding domain AFA_RS05365 PF02811 PHP domain AFA_RS05365 PF07733 Bacterial DNA polymerase III alpha subunit AFA_RS05365 PF14579 Helix-hairpin-helix motif AFA_RS05370 PF00534 Glycosyl transferases group 1 AFA_RS05370 PF13439 Glycosyltransferase Family 4 AFA_RS05375 PF01522 Polysaccharide deacetylase AFA_RS05380 PF00535 Glycosyl transferase family 2 AFA_RS05385 PF01522 Polysaccharide deacetylase AFA_RS05390 PF00534 Glycosyl transferases group 1 AFA_RS05390 PF13439 Glycosyltransferase Family 4 AFA_RS05395 PF00534 Glycosyl transferases group 1 AFA_RS05395 PF13439 Glycosyltransferase Family 4 AFA_RS05400 PF03692 AFA_RS05400 AFA_RS05405 PF02698 DUF218 domain AFA_RS05410 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFA_RS05415 PF00005 ABC transporter AFA_RS05415 PF00664 ABC transporter transmembrane region AFA_RS05425 PF13671 AAA domain AFA_RS05430 PF10150 Ribonuclease E/G family AFA_RS05435 PF04886 AFA_RS05435 AFA_RS05465 PF01266 FAD dependent oxidoreductase AFA_RS05475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS05475 PF03466 LysR substrate binding domain AFA_RS05480 PF01593 Flavin containing amine oxidoreductase AFA_RS05485 PF00392 Bacterial regulatory proteins, gntR family AFA_RS05485 PF07729 FCD domain AFA_RS05490 PF01565 FAD binding domain AFA_RS05490 PF02913 FAD linked oxidases, C-terminal domain AFA_RS05495 PF01565 FAD binding domain AFA_RS05500 PF02754 AFA_RS05500 AFA_RS05500 PF13183 4Fe-4S dicluster domain AFA_RS05505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFA_RS05510 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFA_RS05515 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AFA_RS05520 PF04909 Amidohydrolase AFA_RS05525 PF03737 Demethylmenaquinone methyltransferase AFA_RS05530 PF04909 Amidohydrolase AFA_RS05535 PF07690 Major Facilitator Superfamily AFA_RS05540 PF04303 PrpF protein AFA_RS05545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS05545 PF03466 LysR substrate binding domain AFA_RS05550 PF07690 Major Facilitator Superfamily AFA_RS05555 PF00171 Aldehyde dehydrogenase family AFA_RS05560 PF01565 FAD binding domain AFA_RS05560 PF02913 FAD linked oxidases, C-terminal domain AFA_RS05570 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS05575 PF01494 FAD binding domain AFA_RS05590 PF06674 AFA_RS05590 AFA_RS05600 PF01124 MAPEG family AFA_RS05605 PF01594 AFA_RS05605 AFA_RS05610 PF02690 AFA_RS05610 AFA_RS05625 PF13609 Gram-negative porin AFA_RS05635 PF00892 EamA-like transporter family AFA_RS05640 PF01734 Patatin-like phospholipase AFA_RS05640 PF12536 AFA_RS05640 AFA_RS05645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS05645 PF03466 LysR substrate binding domain AFA_RS05650 PF03601 AFA_RS05650 AFA_RS05655 PF04247 AFA_RS05655 AFA_RS05660 PF00753 Metallo-beta-lactamase superfamily AFA_RS05665 PF01022 Bacterial regulatory protein, arsR family AFA_RS05670 PF04143 AFA_RS05670 AFA_RS05675 PF04143 AFA_RS05675 AFA_RS05680 PF13411 MerR HTH family regulatory protein AFA_RS05685 PF00122 E1-E2 ATPase AFA_RS05685 PF00702 haloacid dehalogenase-like hydrolase AFA_RS05690 PF00916 AFA_RS05690 AFA_RS05690 PF01740 STAS domain AFA_RS05695 PF03781 Sulfatase-modifying factor enzyme 1 AFA_RS05700 PF00884 Sulfatase AFA_RS05705 PF05154 AFA_RS05705 AFA_RS05710 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFA_RS05710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFA_RS05715 PF01266 FAD dependent oxidoreductase AFA_RS05715 PF16901 AFA_RS05715 AFA_RS05720 PF00877 NlpC/P60 family AFA_RS05725 PF05247 Flagellar transcriptional activator (FlhD) AFA_RS05730 PF05280 Flagellar transcriptional activator (FlhC) AFA_RS05735 PF01618 AFA_RS05735 AFA_RS05740 PF00691 OmpA family AFA_RS05740 PF13677 AFA_RS05740 AFA_RS05745 PF01584 CheW-like domain AFA_RS05745 PF01627 Hpt domain AFA_RS05745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS05745 PF02895 Signal transducing histidine kinase, homodimeric domain AFA_RS05745 PF09078 CheY binding AFA_RS05750 PF01584 CheW-like domain AFA_RS05755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_RS05755 PF00672 HAMP domain AFA_RS05755 PF02203 Tar ligand binding domain homologue AFA_RS05760 PF01739 CheR methyltransferase, SAM binding domain AFA_RS05760 PF03705 CheR methyltransferase, all-alpha domain AFA_RS05765 PF00072 Response regulator receiver domain AFA_RS05765 PF01339 CheB methylesterase AFA_RS05770 PF00072 Response regulator receiver domain AFA_RS05775 PF04344 Chemotaxis phosphatase, CheZ AFA_RS05780 PF01312 FlhB HrpN YscU SpaS Family AFA_RS05785 PF00771 FHIPEP family AFA_RS05790 PF00448 SRP54-type protein, GTPase domain AFA_RS05795 PF07804 HipA-like C-terminal domain AFA_RS05795 PF13657 HipA N-terminal domain AFA_RS05800 PF01381 Helix-turn-helix AFA_RS05805 PF05130 FlgN protein AFA_RS05810 PF04316 Anti-sigma-28 factor, FlgM AFA_RS05815 PF13144 SAF-like AFA_RS05820 PF00460 Flagella basal body rod protein AFA_RS05825 PF00460 Flagella basal body rod protein AFA_RS05825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFA_RS05830 PF03963 AFA_RS05830 AFA_RS05830 PF13860 FlgD Ig-like domain AFA_RS05830 PF13861 FlgD Tudor-like domain AFA_RS05835 PF00460 Flagella basal body rod protein AFA_RS05835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFA_RS05835 PF07559 Flagellar basal body protein FlaE AFA_RS05840 PF00460 Flagella basal body rod protein AFA_RS05840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFA_RS05845 PF00460 Flagella basal body rod protein AFA_RS05845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFA_RS05850 PF02107 AFA_RS05850 AFA_RS05855 PF02119 AFA_RS05855 AFA_RS05860 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AFA_RS05860 PF10135 AFA_RS05860 AFA_RS05865 PF00460 Flagella basal body rod protein AFA_RS05865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFA_RS05870 PF00669 Bacterial flagellin N-terminal helical region AFA_RS05875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_RS05875 PF00672 HAMP domain AFA_RS05885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_RS05885 PF02203 Tar ligand binding domain homologue AFA_RS05890 PF00027 Cyclic nucleotide-binding domain AFA_RS05890 PF00571 CBS domain AFA_RS05890 PF03445 AFA_RS05890 AFA_RS05890 PF10335 AFA_RS05890 AFA_RS05895 PF00929 Exonuclease AFA_RS05900 PF01311 AFA_RS05900 AFA_RS05905 PF01313 AFA_RS05905 AFA_RS05910 PF00813 AFA_RS05910 AFA_RS05915 PF04347 AFA_RS05915 AFA_RS05920 PF01052 Surface presentation of antigens (SPOA) AFA_RS05925 PF01052 Surface presentation of antigens (SPOA) AFA_RS05925 PF02154 Flagellar motor switch protein FliM AFA_RS05930 PF03748 AFA_RS05930 AFA_RS05935 PF02120 Flagellar hook-length control protein FliK AFA_RS05940 PF02050 Flagellar FliJ protein AFA_RS05945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFA_RS05950 PF02108 AFA_RS05950 AFA_RS05955 PF01706 FliG C-terminal domain AFA_RS05955 PF14841 FliG middle domain AFA_RS05955 PF14842 FliG N-terminal domain AFA_RS05960 PF01514 Secretory protein of YscJ/FliF family AFA_RS05960 PF08345 AFA_RS05960 AFA_RS05965 PF02049 AFA_RS05965 AFA_RS05970 PF01312 FlhB HrpN YscU SpaS Family AFA_RS05975 PF02120 Flagellar hook-length control protein FliK AFA_RS05980 PF05400 Flagellar protein FliT AFA_RS05985 PF02561 Flagellar protein FliS AFA_RS05990 PF02465 AFA_RS05990 AFA_RS05990 PF07195 AFA_RS05990 AFA_RS05995 PF03646 FlaG protein AFA_RS06000 PF04539 Sigma-70 region 3 AFA_RS06000 PF04542 Sigma-70 region 2 AFA_RS06000 PF04545 Sigma-70, region 4 AFA_RS06005 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AFA_RS06010 PF00669 Bacterial flagellin N-terminal helical region AFA_RS06010 PF00700 Bacterial flagellin C-terminal helical region AFA_RS06010 PF08884 Flagellin D3 domain AFA_RS06015 PF05787 Bacterial protein of unknown function (DUF839) AFA_RS06025 PF07520 AFA_RS06025 AFA_RS06030 PF10139 AFA_RS06030 AFA_RS06040 PF00092 von Willebrand factor type A domain AFA_RS06045 PF00005 ABC transporter AFA_RS06050 PF02687 AFA_RS06050 AFA_RS06055 PF03781 Sulfatase-modifying factor enzyme 1 AFA_RS06070 PF13519 von Willebrand factor type A domain AFA_RS06075 PF04286 AFA_RS06075 AFA_RS06080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_RS06080 PF08447 PAS fold AFA_RS06085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_RS06085 PF08447 PAS fold AFA_RS06095 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFA_RS06095 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFA_RS06100 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS06110 PF02447 AFA_RS06110 AFA_RS06120 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS06125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS06125 PF03466 LysR substrate binding domain AFA_RS06130 PF03831 PhnA protein AFA_RS06130 PF08274 PhnA Zinc-Ribbon AFA_RS06135 PF04542 Sigma-70 region 2 AFA_RS06135 PF08281 Sigma-70, region 4 AFA_RS06140 PF04773 FecR protein AFA_RS06140 PF16220 AFA_RS06140 AFA_RS06145 PF07715 TonB-dependent Receptor Plug Domain AFA_RS06150 PF03150 Di-haem cytochrome c peroxidase AFA_RS06155 PF00465 Iron-containing alcohol dehydrogenase AFA_RS06160 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS06165 PF06808 AFA_RS06165 AFA_RS06170 PF04290 AFA_RS06170 AFA_RS06175 PF00924 Mechanosensitive ion channel AFA_RS06180 PF00324 Amino acid permease AFA_RS06185 PF00230 Major intrinsic protein AFA_RS06190 PF11804 AFA_RS06190 AFA_RS06195 PF12365 AFA_RS06195 AFA_RS06200 PF03929 AFA_RS06200 AFA_RS06210 PF07158 AFA_RS06210 AFA_RS06215 PF00857 Isochorismatase family AFA_RS06220 PF04143 AFA_RS06220 AFA_RS06225 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS06225 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding AFA_RS06235 PF08770 Sulphur oxidation protein SoxZ AFA_RS06240 PF13501 Sulfur oxidation protein SoxY AFA_RS06245 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS06250 PF00313 'Cold-shock' DNA-binding domain AFA_RS06270 PF13245 Part of AAA domain AFA_RS06270 PF13538 UvrD-like helicase C-terminal domain AFA_RS06275 PF00069 Protein kinase domain AFA_RS06285 PF06067 AFA_RS06285 AFA_RS06295 PF01170 Putative RNA methylase family UPF0020 AFA_RS06300 PF00145 C-5 cytosine-specific DNA methylase AFA_RS06305 PF09665 AFA_RS06305 AFA_RS06310 PF01381 Helix-turn-helix AFA_RS06320 PF10074 AFA_RS06320 AFA_RS06335 PF04610 AFA_RS06335 AFA_RS06340 PF04335 VirB8 protein AFA_RS06345 PF03524 Conjugal transfer protein AFA_RS06350 PF03743 Bacterial conjugation TrbI-like protein AFA_RS06355 PF10038 AFA_RS06355 AFA_RS06370 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS06370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS06370 PF08521 AFA_RS06370 AFA_RS06375 PF00072 Response regulator receiver domain AFA_RS06375 PF00486 Transcriptional regulatory protein, C terminal AFA_RS06380 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_RS06385 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AFA_RS06390 PF00034 Cytochrome c AFA_RS06395 PF00034 Cytochrome c AFA_RS06400 PF00149 Calcineurin-like phosphoesterase AFA_RS06405 PF00593 TonB dependent receptor AFA_RS06405 PF07660 Secretin and TonB N terminus short domain AFA_RS06405 PF07715 TonB-dependent Receptor Plug Domain AFA_RS06410 PF04773 FecR protein AFA_RS06410 PF16220 AFA_RS06410 AFA_RS06410 PF16344 AFA_RS06410 AFA_RS06415 PF04542 Sigma-70 region 2 AFA_RS06415 PF08281 Sigma-70, region 4 AFA_RS06420 PF00266 Aminotransferase class-V AFA_RS06425 PF02321 Outer membrane efflux protein AFA_RS06430 PF01914 AFA_RS06430 AFA_RS06435 PF01979 Amidohydrolase family AFA_RS06440 PF17090 AFA_RS06440 AFA_RS06445 PF13437 HlyD family secretion protein AFA_RS06445 PF13533 Biotin-lipoyl like AFA_RS06450 PF04632 AFA_RS06450 AFA_RS06455 PF00860 Permease family AFA_RS06460 PF12710 haloacid dehalogenase-like hydrolase AFA_RS06465 PF03729 AFA_RS06465 AFA_RS06470 PF04314 Protein of unknown function (DUF461) AFA_RS06475 PF02630 SCO1/SenC AFA_RS06485 PF01645 Conserved region in glutamate synthase AFA_RS06490 PF04632 AFA_RS06490 AFA_RS06495 PF01047 MarR family AFA_RS06500 PF02464 Competence-damaged protein AFA_RS06505 PF00330 Aconitase family (aconitate hydratase) AFA_RS06505 PF00694 Aconitase C-terminal domain AFA_RS06510 PF00392 Bacterial regulatory proteins, gntR family AFA_RS06510 PF07729 FCD domain AFA_RS06515 PF04303 PrpF protein AFA_RS06520 PF12833 Helix-turn-helix domain AFA_RS06520 PF14525 AFA_RS06520 AFA_RS06525 PF13458 Periplasmic binding protein AFA_RS06530 PF00355 Rieske [2Fe-2S] domain AFA_RS06530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_RS06535 PF00866 Ring hydroxylating beta subunit AFA_RS06540 PF00857 Isochorismatase family AFA_RS06545 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS06550 PF01593 Flavin containing amine oxidoreductase AFA_RS06555 PF00171 Aldehyde dehydrogenase family AFA_RS06560 PF00106 short chain dehydrogenase AFA_RS06565 PF00501 AMP-binding enzyme AFA_RS06570 PF02627 Carboxymuconolactone decarboxylase family AFA_RS06580 PF00924 Mechanosensitive ion channel AFA_RS06580 PF12607 AFA_RS06580 AFA_RS06585 PF00924 Mechanosensitive ion channel AFA_RS06590 PF00083 Sugar (and other) transporter AFA_RS06595 PF00266 Aminotransferase class-V AFA_RS06605 PF01381 Helix-turn-helix AFA_RS06605 PF07883 Cupin domain AFA_RS06610 PF00072 Response regulator receiver domain AFA_RS06610 PF01966 HD domain AFA_RS06615 PF00072 Response regulator receiver domain AFA_RS06615 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS06615 PF00989 PAS fold AFA_RS06615 PF01627 Hpt domain AFA_RS06615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS06615 PF03707 AFA_RS06615 AFA_RS06620 PF00571 CBS domain AFA_RS06620 PF01769 Divalent cation transporter AFA_RS06620 PF03448 MgtE intracellular N domain AFA_RS06630 PF06965 Na+/H+ antiporter 1 AFA_RS06635 PF02580 D-Tyr-tRNA(Tyr) deacylase AFA_RS06640 PF00893 Small Multidrug Resistance protein AFA_RS06645 PF09335 AFA_RS06645 AFA_RS06650 PF00583 Acetyltransferase (GNAT) family AFA_RS06660 PF01435 Peptidase family M48 AFA_RS06665 PF08332 Calcium/calmodulin dependent protein kinase II Association AFA_RS06690 PF01555 DNA methylase AFA_RS06700 PF04381 Putative exonuclease, RdgC AFA_RS06710 PF00436 Single-strand binding protein family AFA_RS06715 PF09588 YqaJ-like viral recombinase domain AFA_RS06720 PF04404 AFA_RS06720 AFA_RS06775 PF14213 AFA_RS06775 AFA_RS06810 PF05772 NinB protein AFA_RS06815 PF16786 AFA_RS06815 AFA_RS06830 PF06356 AFA_RS06830 AFA_RS06855 PF10045 AFA_RS06855 AFA_RS06860 PF17289 AFA_RS06860 AFA_RS06870 PF06381 AFA_RS06870 AFA_RS06875 PF04233 AFA_RS06875 AFA_RS06900 PF07799 AFA_RS06900 AFA_RS06925 PF02368 Bacterial Ig-like domain (group 2) AFA_RS06970 PF13472 GDSL-like Lipase/Acylhydrolase family AFA_RS06980 PF00959 Phage lysozyme AFA_RS06985 PF10721 AFA_RS06985 AFA_RS07000 PF02586 Uncharacterised ACR, COG2135 AFA_RS07010 PF00589 Phage integrase family AFA_RS07035 PF00717 Peptidase S24-like AFA_RS07055 PF06356 AFA_RS07055 AFA_RS07070 PF13554 Bacteriophage related domain of unknown function AFA_RS07085 PF09718 AFA_RS07085 AFA_RS07090 PF05939 AFA_RS07090 AFA_RS07095 PF05100 AFA_RS07095 AFA_RS07100 PF00877 NlpC/P60 family AFA_RS07100 PF14464 Prokaryotic homologs of the JAB domain AFA_RS07105 PF06805 AFA_RS07105 AFA_RS07110 PF09327 AFA_RS07110 AFA_RS07110 PF13550 AFA_RS07110 AFA_RS07150 PF00959 Phage lysozyme AFA_RS07155 PF10721 AFA_RS07155 AFA_RS07175 PF04342 AFA_RS07175 AFA_RS07180 PF03724 META domain AFA_RS07180 PF14302 AFA_RS07180 AFA_RS07185 PF04391 AFA_RS07185 AFA_RS07190 PF13458 Periplasmic binding protein AFA_RS07195 PF13031 AFA_RS07195 AFA_RS07200 PF12843 AFA_RS07200 AFA_RS07205 PF00990 GGDEF domain AFA_RS07215 PF03473 MOSC domain AFA_RS07215 PF03476 MOSC N-terminal beta barrel domain AFA_RS07220 PF01037 AsnC family AFA_RS07220 PF13412 Winged helix-turn-helix DNA-binding AFA_RS07225 PF01053 Cys/Met metabolism PLP-dependent enzyme AFA_RS07235 PF00293 NUDIX domain AFA_RS07240 PF04304 AFA_RS07240 AFA_RS07245 PF02627 Carboxymuconolactone decarboxylase family AFA_RS07250 PF00764 Arginosuccinate synthase AFA_RS07255 PF00149 Calcineurin-like phosphoesterase AFA_RS07260 PF00005 ABC transporter AFA_RS07260 PF08402 TOBE domain AFA_RS07265 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS07270 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS07275 PF13343 Bacterial extracellular solute-binding protein AFA_RS07280 PF00356 Bacterial regulatory proteins, lacI family AFA_RS07280 PF13377 Periplasmic binding protein-like domain AFA_RS07285 PF00117 Glutamine amidotransferase class-I AFA_RS07290 PF09604 AFA_RS07290 AFA_RS07295 PF03814 AFA_RS07295 AFA_RS07300 PF02669 AFA_RS07300 AFA_RS07305 PF00122 E1-E2 ATPase AFA_RS07305 PF00702 haloacid dehalogenase-like hydrolase AFA_RS07310 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS07310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS07310 PF02702 Osmosensitive K+ channel His kinase sensor domain AFA_RS07310 PF13493 Domain of unknown function (DUF4118) AFA_RS07315 PF00072 Response regulator receiver domain AFA_RS07315 PF00486 Transcriptional regulatory protein, C terminal AFA_RS07320 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFA_RS07320 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFA_RS07325 PF12112 Protein of unknown function (DUF3579) AFA_RS07330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFA_RS07330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFA_RS07335 PF01649 Ribosomal protein S20 AFA_RS07340 PF03023 AFA_RS07340 AFA_RS07345 PF00106 short chain dehydrogenase AFA_RS07350 PF00406 Adenylate kinase AFA_RS07350 PF05191 Adenylate kinase, active site lid AFA_RS07355 PF02348 Cytidylyltransferase AFA_RS07360 PF03966 Trm112p-like protein AFA_RS07365 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AFA_RS07370 PF02472 Biopolymer transport protein ExbD/TolR AFA_RS07375 PF01618 AFA_RS07375 AFA_RS07380 PF02601 AFA_RS07380 AFA_RS07380 PF13742 AFA_RS07380 AFA_RS07385 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFA_RS07385 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFA_RS07390 PF00210 Ferritin-like domain AFA_RS07395 PF00108 Thiolase, N-terminal domain AFA_RS07395 PF02803 Thiolase, C-terminal domain AFA_RS07400 PF02643 Uncharacterized ACR, COG1430 AFA_RS07405 PF00313 'Cold-shock' DNA-binding domain AFA_RS07410 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFA_RS07415 PF00004 ATPase family associated with various cellular activities (AAA) AFA_RS07415 PF02861 Clp amino terminal domain AFA_RS07415 PF07724 AAA domain (Cdc48 subfamily) AFA_RS07415 PF10431 C-terminal, D2-small domain, of ClpB protein AFA_RS07420 PF04403 AFA_RS07420 AFA_RS07425 PF02470 AFA_RS07425 AFA_RS07430 PF03886 Protein of unknown function (DUF330) AFA_RS07435 PF00171 Aldehyde dehydrogenase family AFA_RS07435 PF01619 Proline dehydrogenase AFA_RS07435 PF14850 DNA-binding domain of Proline dehydrogenase AFA_RS07440 PF13458 Periplasmic binding protein AFA_RS07445 PF02653 AFA_RS07445 AFA_RS07450 PF02653 AFA_RS07450 AFA_RS07455 PF00005 ABC transporter AFA_RS07455 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_RS07460 PF00005 ABC transporter AFA_RS07460 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_RS07470 PF00106 short chain dehydrogenase AFA_RS07475 PF01988 AFA_RS07475 AFA_RS07480 PF01965 DJ-1/PfpI family AFA_RS07485 PF04471 Restriction endonuclease AFA_RS07490 PF05971 Protein of unknown function (DUF890) AFA_RS07495 PF00692 dUTPase AFA_RS07500 PF02441 Flavoprotein AFA_RS07500 PF04127 DNA / pantothenate metabolism flavoprotein AFA_RS07505 PF01252 AFA_RS07505 AFA_RS07510 PF00133 tRNA synthetases class I (I, L, M and V) AFA_RS07510 PF06827 Zinc finger found in FPG and IleRS AFA_RS07510 PF08264 Anticodon-binding domain of tRNA AFA_RS07515 PF01687 Riboflavin kinase AFA_RS07515 PF06574 FAD synthetase AFA_RS07520 PF00551 Formyl transferase AFA_RS07525 PF01189 NOL1/NOP2/sun family AFA_RS07530 PF00487 AFA_RS07530 AFA_RS07535 PF00580 UvrD/REP helicase N-terminal domain AFA_RS07535 PF13361 UvrD-like helicase C-terminal domain AFA_RS07540 PF00174 Oxidoreductase molybdopterin binding domain AFA_RS07540 PF03404 Mo-co oxidoreductase dimerisation domain AFA_RS07545 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS07550 PF09423 PhoD-like phosphatase AFA_RS07560 PF00005 ABC transporter AFA_RS07560 PF12848 ABC transporter AFA_RS07565 PF05175 Methyltransferase small domain AFA_RS07570 PF01546 Peptidase family M20/M25/M40 AFA_RS07570 PF07687 Peptidase dimerisation domain AFA_RS07575 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_RS07575 PF14602 Hexapeptide repeat of succinyl-transferase AFA_RS07575 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AFA_RS07585 PF02311 AraC-like ligand binding domain AFA_RS07585 PF12833 Helix-turn-helix domain AFA_RS07590 PF01925 AFA_RS07590 AFA_RS07595 PF02080 TrkA-C domain AFA_RS07595 PF03600 Citrate transporter AFA_RS07600 PF03061 Thioesterase superfamily AFA_RS07610 PF06476 AFA_RS07610 AFA_RS07615 PF01223 DNA/RNA non-specific endonuclease AFA_RS07630 PF01758 Sodium Bile acid symporter family AFA_RS07635 PF02293 AmiS/UreI family transporter AFA_RS07640 PF13411 MerR HTH family regulatory protein AFA_RS07645 PF07690 Major Facilitator Superfamily AFA_RS07660 PF02515 CoA-transferase family III AFA_RS07665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFA_RS07665 PF05697 Bacterial trigger factor protein (TF) AFA_RS07665 PF05698 Bacterial trigger factor protein (TF) C-terminus AFA_RS07670 PF00574 Clp protease AFA_RS07675 PF06689 ClpX C4-type zinc finger AFA_RS07675 PF07724 AAA domain (Cdc48 subfamily) AFA_RS07675 PF10431 C-terminal, D2-small domain, of ClpB protein AFA_RS07680 PF00004 ATPase family associated with various cellular activities (AAA) AFA_RS07680 PF02190 ATP-dependent protease La (LON) domain AFA_RS07680 PF05362 Lon protease (S16) C-terminal proteolytic domain AFA_RS07685 PF00717 Peptidase S24-like AFA_RS07685 PF01726 LexA DNA binding domain AFA_RS07690 PF13302 Acetyltransferase (GNAT) domain AFA_RS07695 PF00155 Aminotransferase class I and II AFA_RS07700 PF00271 Helicase conserved C-terminal domain AFA_RS07700 PF02151 UvrB/uvrC motif AFA_RS07700 PF04851 Type III restriction enzyme, res subunit AFA_RS07700 PF12344 Ultra-violet resistance protein B AFA_RS07705 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFA_RS07710 PF02082 Transcriptional regulator AFA_RS07715 PF00266 Aminotransferase class-V AFA_RS07720 PF01592 NifU-like N terminal domain AFA_RS07725 PF01521 Iron-sulphur cluster biosynthesis AFA_RS07735 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS07740 PF00152 tRNA synthetases class II (D, K and N) AFA_RS07740 PF01336 OB-fold nucleic acid binding domain AFA_RS07745 PF00106 short chain dehydrogenase AFA_RS07755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_RS07760 PF01176 Translation initiation factor 1A / IF-1 AFA_RS07765 PF00892 EamA-like transporter family AFA_RS07770 PF01758 Sodium Bile acid symporter family AFA_RS07775 PF00892 EamA-like transporter family AFA_RS07780 PF01368 DHH family AFA_RS07780 PF02272 DHHA1 domain AFA_RS07790 PF02687 AFA_RS07790 AFA_RS07790 PF12704 MacB-like periplasmic core domain AFA_RS07795 PF00005 ABC transporter AFA_RS07800 PF01026 TatD related DNase AFA_RS07805 PF00753 Metallo-beta-lactamase superfamily AFA_RS07805 PF03772 AFA_RS07805 AFA_RS07805 PF13567 AFA_RS07805 AFA_RS07810 PF12697 Alpha/beta hydrolase family AFA_RS07815 PF02811 PHP domain AFA_RS07820 PF01272 Transcription elongation factor, GreA/GreB, C-term AFA_RS07820 PF03449 Transcription elongation factor, N-terminal AFA_RS07825 PF02769 AIR synthase related protein, C-terminal domain AFA_RS07825 PF13507 CobB/CobQ-like glutamine amidotransferase domain AFA_RS07830 PF00478 IMP dehydrogenase / GMP reductase domain AFA_RS07830 PF00571 CBS domain AFA_RS07835 PF12697 Alpha/beta hydrolase family AFA_RS07840 PF00117 Glutamine amidotransferase class-I AFA_RS07840 PF00958 GMP synthase C terminal domain AFA_RS07840 PF02540 NAD synthase AFA_RS07845 PF00589 Phage integrase family AFA_RS07845 PF13356 Domain of unknown function (DUF4102) AFA_RS07850 PF05930 Prophage CP4-57 regulatory protein (AlpA) AFA_RS07855 PF13481 AAA domain AFA_RS07860 PF06504 AFA_RS07860 AFA_RS07880 PF04610 AFA_RS07880 AFA_RS07890 PF12703 AFA_RS07890 AFA_RS07900 PF01758 Sodium Bile acid symporter family AFA_RS07905 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFA_RS07910 PF03358 NADPH-dependent FMN reductase AFA_RS07915 PF12840 Helix-turn-helix domain AFA_RS07920 PF00239 Resolvase, N terminal domain AFA_RS07920 PF02796 Helix-turn-helix domain of resolvase AFA_RS07930 PF04986 AFA_RS07930 AFA_RS07930 PF14319 AFA_RS07930 AFA_RS07940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFA_RS07945 PF00809 Pterin binding enzyme AFA_RS07955 PF03403 Platelet-activating factor acetylhydrolase, isoform II AFA_RS07960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS07960 PF03466 LysR substrate binding domain AFA_RS07965 PF01717 Cobalamin-independent synthase, Catalytic domain AFA_RS07965 PF08267 Cobalamin-independent synthase, N-terminal domain AFA_RS07975 PF08908 AFA_RS07975 AFA_RS07980 PF01717 Cobalamin-independent synthase, Catalytic domain AFA_RS07985 PF00440 Bacterial regulatory proteins, tetR family AFA_RS07990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS07990 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS07995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_RS08000 PF08279 HTH domain AFA_RS08000 PF13280 AFA_RS08000 AFA_RS08005 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFA_RS08005 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFA_RS08010 PF02649 Type I GTP cyclohydrolase folE2 AFA_RS08015 PF01809 AFA_RS08015 AFA_RS08020 PF02657 Fe-S metabolism associated domain AFA_RS08025 PF01979 Amidohydrolase family AFA_RS08030 PF01475 Ferric uptake regulator family AFA_RS08035 PF01502 Phosphoribosyl-AMP cyclohydrolase AFA_RS08040 PF08543 Phosphomethylpyrimidine kinase AFA_RS08045 PF00293 NUDIX domain AFA_RS08050 PF14552 Tautomerase enzyme AFA_RS08060 PF01292 Prokaryotic cytochrome b561 AFA_RS08065 PF03060 Nitronate monooxygenase AFA_RS08070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS08070 PF03466 LysR substrate binding domain AFA_RS08075 PF02311 AraC-like ligand binding domain AFA_RS08075 PF12833 Helix-turn-helix domain AFA_RS08090 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_RS08095 PF00043 Glutathione S-transferase, C-terminal domain AFA_RS08095 PF02798 Glutathione S-transferase, N-terminal domain AFA_RS08100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS08100 PF03466 LysR substrate binding domain AFA_RS08105 PF04234 CopC domain AFA_RS08105 PF05425 AFA_RS08105 AFA_RS08110 PF07987 Domain of unkown function (DUF1775) AFA_RS08120 PF02798 Glutathione S-transferase, N-terminal domain AFA_RS08125 PF00574 Clp protease AFA_RS08130 PF04575 AFA_RS08130 AFA_RS08140 PF00593 TonB dependent receptor AFA_RS08140 PF07715 TonB-dependent Receptor Plug Domain AFA_RS08145 PF12833 Helix-turn-helix domain AFA_RS08150 PF00891 O-methyltransferase AFA_RS08155 PF07690 Major Facilitator Superfamily AFA_RS08160 PF00581 Rhodanese-like domain AFA_RS08160 PF00899 ThiF family AFA_RS08165 PF14464 Prokaryotic homologs of the JAB domain AFA_RS08170 PF02597 ThiS family AFA_RS08175 PF02515 CoA-transferase family III AFA_RS08180 PF00501 AMP-binding enzyme AFA_RS08180 PF13193 AMP-binding enzyme C-terminal domain AFA_RS08185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS08185 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS08185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_RS08190 PF07690 Major Facilitator Superfamily AFA_RS08200 PF02635 DsrE/DsrF-like family AFA_RS08205 PF02627 Carboxymuconolactone decarboxylase family AFA_RS08210 PF01022 Bacterial regulatory protein, arsR family AFA_RS08215 PF11127 Protein of unknown function (DUF2892) AFA_RS08225 PF02311 AraC-like ligand binding domain AFA_RS08225 PF12833 Helix-turn-helix domain AFA_RS08230 PF00682 HMGL-like AFA_RS08230 PF08502 LeuA allosteric (dimerisation) domain AFA_RS08235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS08235 PF03466 LysR substrate binding domain AFA_RS08240 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFA_RS08240 PF13378 Enolase C-terminal domain-like AFA_RS08245 PF00775 Dioxygenase AFA_RS08245 PF04444 Catechol dioxygenase N terminus AFA_RS08250 PF01144 Coenzyme A transferase AFA_RS08255 PF01144 Coenzyme A transferase AFA_RS08260 PF00561 alpha/beta hydrolase fold AFA_RS08265 PF02426 Muconolactone delta-isomerase AFA_RS08270 PF03594 AFA_RS08270 AFA_RS08275 PF01926 50S ribosome-binding GTPase AFA_RS08280 PF01926 50S ribosome-binding GTPase AFA_RS08285 PF02535 AFA_RS08285 AFA_RS08295 PF00005 ABC transporter AFA_RS08300 PF00850 Histone deacetylase domain AFA_RS08305 PF00196 Bacterial regulatory proteins, luxR family AFA_RS08310 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFA_RS08310 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFA_RS08330 PF02585 GlcNAc-PI de-N-acetylase AFA_RS08335 PF05940 AFA_RS08335 AFA_RS08340 PF01047 MarR family AFA_RS08345 PF01494 FAD binding domain AFA_RS08350 PF07690 Major Facilitator Superfamily AFA_RS08360 PF01168 Alanine racemase, N-terminal domain AFA_RS08365 PF00155 Aminotransferase class I and II AFA_RS08365 PF00392 Bacterial regulatory proteins, gntR family AFA_RS08370 PF00892 EamA-like transporter family AFA_RS08375 PF12802 MarR family AFA_RS08380 PF08774 VRR-NUC domain AFA_RS08385 PF06733 DEAD_2 AFA_RS08385 PF13307 Helicase C-terminal domain AFA_RS08390 PF01266 FAD dependent oxidoreductase AFA_RS08395 PF00890 FAD binding domain AFA_RS08400 PF02445 Quinolinate synthetase A protein AFA_RS08405 PF00248 Aldo/keto reductase family AFA_RS08410 PF03692 AFA_RS08410 AFA_RS08420 PF03006 AFA_RS08420 AFA_RS08425 PF07411 Domain of unknown function (DUF1508) AFA_RS08430 PF01037 AsnC family AFA_RS08430 PF09339 IclR helix-turn-helix domain AFA_RS08430 PF13404 AsnC-type helix-turn-helix domain AFA_RS08435 PF07690 Major Facilitator Superfamily AFA_RS08440 PF01425 Amidase AFA_RS08450 PF01042 Endoribonuclease L-PSP AFA_RS08455 PF04828 Glutathione-dependent formaldehyde-activating enzyme AFA_RS08460 PF08212 Lipocalin-like domain AFA_RS08465 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_RS08470 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS08475 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS08480 PF00005 ABC transporter AFA_RS08505 PF00158 Sigma-54 interaction domain AFA_RS08505 PF02830 V4R domain AFA_RS08505 PF02954 Bacterial regulatory protein, Fis family AFA_RS08505 PF06505 AFA_RS08505 AFA_RS08510 PF06099 AFA_RS08510 AFA_RS08515 PF02332 Methane/Phenol/Toluene Hydroxylase AFA_RS08520 PF02406 MmoB/DmpM family AFA_RS08525 PF02332 Methane/Phenol/Toluene Hydroxylase AFA_RS08525 PF04945 YHS domain AFA_RS08530 PF04663 Phenol hydroxylase conserved region AFA_RS08535 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS08535 PF00175 Oxidoreductase NAD-binding domain AFA_RS08535 PF00970 Oxidoreductase FAD-binding domain AFA_RS08540 PF00355 Rieske [2Fe-2S] domain AFA_RS08540 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_RS08545 PF03061 Thioesterase superfamily AFA_RS08550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS08550 PF03466 LysR substrate binding domain AFA_RS08555 PF00355 Rieske [2Fe-2S] domain AFA_RS08555 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_RS08560 PF00866 Ring hydroxylating beta subunit AFA_RS08565 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS08565 PF00175 Oxidoreductase NAD-binding domain AFA_RS08565 PF00970 Oxidoreductase FAD-binding domain AFA_RS08570 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS08575 PF07690 Major Facilitator Superfamily AFA_RS08585 PF01810 AFA_RS08585 AFA_RS08590 PF08308 AFA_RS08590 AFA_RS08595 PF00356 Bacterial regulatory proteins, lacI family AFA_RS08595 PF13377 Periplasmic binding protein-like domain AFA_RS08600 PF01925 AFA_RS08600 AFA_RS08605 PF01979 Amidohydrolase family AFA_RS08610 PF00860 Permease family AFA_RS08625 PF01145 SPFH domain / Band 7 family AFA_RS08630 PF01957 NfeD-like C-terminal, partner-binding AFA_RS08635 PF13649 Methyltransferase domain AFA_RS08640 PF14903 AFA_RS08640 AFA_RS08645 PF03891 AFA_RS08645 AFA_RS08655 PF00294 pfkB family carbohydrate kinase AFA_RS08660 PF03891 AFA_RS08660 AFA_RS08665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFA_RS08665 PF02824 TGS domain AFA_RS08665 PF03129 Anticodon binding domain AFA_RS08665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFA_RS08670 PF00707 Translation initiation factor IF-3, C-terminal domain AFA_RS08670 PF05198 Translation initiation factor IF-3, N-terminal domain AFA_RS08675 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AFA_RS08675 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AFA_RS08680 PF03610 PTS system fructose IIA component AFA_RS08685 PF00381 PTS HPr component phosphorylation site AFA_RS08690 PF00391 PEP-utilising enzyme, mobile domain AFA_RS08690 PF02896 PEP-utilising enzyme, TIM barrel domain AFA_RS08690 PF05524 PEP-utilising enzyme, N-terminal AFA_RS08700 PF04380 AFA_RS08700 AFA_RS08705 PF07690 Major Facilitator Superfamily AFA_RS08710 PF13599 Pentapeptide repeats (9 copies) AFA_RS08715 PF01078 Magnesium chelatase, subunit ChlI AFA_RS08715 PF13335 AFA_RS08715 AFA_RS08715 PF13541 Subunit ChlI of Mg-chelatase AFA_RS08720 PF01632 Ribosomal protein L35 AFA_RS08725 PF00453 Ribosomal protein L20 AFA_RS08730 PF01409 tRNA synthetases class II core domain (F) AFA_RS08730 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFA_RS08735 PF01588 Putative tRNA binding domain AFA_RS08735 PF03147 Ferredoxin-fold anticodon binding domain AFA_RS08735 PF03483 B3/4 domain AFA_RS08735 PF03484 tRNA synthetase B5 domain AFA_RS08740 PF00216 Bacterial DNA-binding protein AFA_RS08745 PF13411 MerR HTH family regulatory protein AFA_RS08750 PF04305 AFA_RS08750 AFA_RS08755 PF04542 Sigma-70 region 2 AFA_RS08755 PF10099 AFA_RS08755 AFA_RS08760 PF00005 ABC transporter AFA_RS08760 PF00664 ABC transporter transmembrane region AFA_RS08765 PF02082 Transcriptional regulator AFA_RS08770 PF01458 Uncharacterized protein family (UPF0051) AFA_RS08775 PF00005 ABC transporter AFA_RS08780 PF01458 Uncharacterized protein family (UPF0051) AFA_RS08785 PF00266 Aminotransferase class-V AFA_RS08790 PF01592 NifU-like N terminal domain AFA_RS08795 PF01883 Domain of unknown function DUF59 AFA_RS08800 PF00196 Bacterial regulatory proteins, luxR family AFA_RS08810 PF03783 Curli production assembly/transport component CsgG AFA_RS08815 PF10614 AFA_RS08815 AFA_RS08820 PF10627 AFA_RS08820 AFA_RS08825 PF13994 AFA_RS08825 AFA_RS08830 PF00535 Glycosyl transferase family 2 AFA_RS08835 PF01522 Polysaccharide deacetylase AFA_RS08835 PF14883 Hypothetical glycosyl hydrolase family 13 AFA_RS08855 PF00313 'Cold-shock' DNA-binding domain AFA_RS08860 PF04972 BON domain AFA_RS08870 PF07661 AFA_RS08870 AFA_RS08890 PF01380 SIS domain AFA_RS08890 PF01418 Helix-turn-helix domain, rpiR family AFA_RS08895 PF00291 Pyridoxal-phosphate dependent enzyme AFA_RS08900 PF01546 Peptidase family M20/M25/M40 AFA_RS08900 PF07687 Peptidase dimerisation domain AFA_RS08905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFA_RS08910 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS08915 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS08915 PF12911 AFA_RS08915 AFA_RS08920 PF00005 ABC transporter AFA_RS08920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFA_RS08925 PF00795 Carbon-nitrogen hydrolase AFA_RS08930 PF01546 Peptidase family M20/M25/M40 AFA_RS08930 PF07687 Peptidase dimerisation domain AFA_RS08935 PF07171 MlrC C-terminus AFA_RS08935 PF07364 Protein of unknown function (DUF1485) AFA_RS08955 PF08857 Putative ParB-like nuclease AFA_RS08970 PF00593 TonB dependent receptor AFA_RS08970 PF07715 TonB-dependent Receptor Plug Domain AFA_RS08980 PF00107 Zinc-binding dehydrogenase AFA_RS08980 PF08240 Alcohol dehydrogenase GroES-like domain AFA_RS08985 PF12833 Helix-turn-helix domain AFA_RS08985 PF12852 Cupin AFA_RS08990 PF01266 FAD dependent oxidoreductase AFA_RS09000 PF07883 Cupin domain AFA_RS09000 PF12844 Helix-turn-helix domain AFA_RS09005 PF03781 Sulfatase-modifying factor enzyme 1 AFA_RS09020 PF02386 Cation transport protein AFA_RS09025 PF02080 TrkA-C domain AFA_RS09025 PF02254 TrkA-N domain AFA_RS09030 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFA_RS09035 PF03061 Thioesterase superfamily AFA_RS09040 PF09424 Yqey-like protein AFA_RS09045 PF02811 PHP domain AFA_RS09045 PF07733 Bacterial DNA polymerase III alpha subunit AFA_RS09045 PF14579 Helix-hairpin-helix motif AFA_RS09060 PF03942 AFA_RS09060 AFA_RS09070 PF05742 AFA_RS09070 AFA_RS09075 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AFA_RS09080 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS09085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS09085 PF03466 LysR substrate binding domain AFA_RS09090 PF00768 D-alanyl-D-alanine carboxypeptidase AFA_RS09095 PF06366 AFA_RS09095 AFA_RS09100 PF01618 AFA_RS09100 AFA_RS09105 PF00691 OmpA family AFA_RS09105 PF13677 AFA_RS09105 AFA_RS09110 PF00474 Sodium:solute symporter family AFA_RS09115 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS09120 PF00296 Luciferase-like monooxygenase AFA_RS09125 PF00106 short chain dehydrogenase AFA_RS09130 PF00677 Lumazine binding domain AFA_RS09135 PF13521 AAA domain AFA_RS09140 PF00206 Lyase AFA_RS09140 PF10415 Fumarase C C-terminus AFA_RS09145 PF00375 Sodium:dicarboxylate symporter family AFA_RS09150 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS09150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS09155 PF00072 Response regulator receiver domain AFA_RS09155 PF00158 Sigma-54 interaction domain AFA_RS09155 PF02954 Bacterial regulatory protein, Fis family AFA_RS09160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS09160 PF03466 LysR substrate binding domain AFA_RS09165 PF00890 FAD binding domain AFA_RS09175 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS09180 PF00384 Molybdopterin oxidoreductase AFA_RS09180 PF01568 Molydopterin dinucleotide binding domain AFA_RS09185 PF03916 AFA_RS09185 AFA_RS09190 PF13247 4Fe-4S dicluster domain AFA_RS09195 PF00593 TonB dependent receptor AFA_RS09195 PF07715 TonB-dependent Receptor Plug Domain AFA_RS09200 PF09723 AFA_RS09200 AFA_RS09205 PF03069 Acetamidase/Formamidase family AFA_RS09210 PF01979 Amidohydrolase family AFA_RS09215 PF00860 Permease family AFA_RS09220 PF00011 Hsp20/alpha crystallin family AFA_RS09225 PF01546 Peptidase family M20/M25/M40 AFA_RS09225 PF07687 Peptidase dimerisation domain AFA_RS09230 PF02311 AraC-like ligand binding domain AFA_RS09230 PF12833 Helix-turn-helix domain AFA_RS09235 PF07690 Major Facilitator Superfamily AFA_RS09240 PF07690 Major Facilitator Superfamily AFA_RS09245 PF07859 alpha/beta hydrolase fold AFA_RS09250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_RS09255 PF01494 FAD binding domain AFA_RS09260 PF01047 MarR family AFA_RS09265 PF00293 NUDIX domain AFA_RS09265 PF09297 NADH pyrophosphatase zinc ribbon domain AFA_RS09270 PF03755 AFA_RS09270 AFA_RS09270 PF08340 AFA_RS09270 AFA_RS09275 PF00149 Calcineurin-like phosphoesterase AFA_RS09280 PF13514 AAA domain AFA_RS09285 PF01138 3' exoribonuclease family, domain 1 AFA_RS09285 PF03725 3' exoribonuclease family, domain 2 AFA_RS09290 PF01725 Ham1 family AFA_RS09295 PF04055 Radical SAM superfamily AFA_RS09295 PF06969 HemN C-terminal domain AFA_RS09300 PF00120 Glutamine synthetase, catalytic domain AFA_RS09300 PF03951 Glutamine synthetase, beta-Grasp domain AFA_RS09305 PF13673 Acetyltransferase (GNAT) domain AFA_RS09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS09310 PF03466 LysR substrate binding domain AFA_RS09315 PF07690 Major Facilitator Superfamily AFA_RS09320 PF00462 Glutaredoxin AFA_RS09320 PF07291 AFA_RS09320 AFA_RS09325 PF00005 ABC transporter AFA_RS09330 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS09335 PF13343 Bacterial extracellular solute-binding protein AFA_RS09340 PF00175 Oxidoreductase NAD-binding domain AFA_RS09340 PF00970 Oxidoreductase FAD-binding domain AFA_RS09345 PF01042 Endoribonuclease L-PSP AFA_RS09350 PF00270 DEAD/DEAH box helicase AFA_RS09350 PF00271 Helicase conserved C-terminal domain AFA_RS09350 PF17191 AFA_RS09350 AFA_RS09355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS09355 PF03466 LysR substrate binding domain AFA_RS09360 PF00210 Ferritin-like domain AFA_RS09365 PF13458 Periplasmic binding protein AFA_RS09370 PF00005 ABC transporter AFA_RS09370 PF08402 TOBE domain AFA_RS09375 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS09380 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS09385 PF13416 Bacterial extracellular solute-binding protein AFA_RS09390 PF03807 NADP oxidoreductase coenzyme F420-dependent AFA_RS09390 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFA_RS09395 PF13458 Periplasmic binding protein AFA_RS09400 PF02653 AFA_RS09400 AFA_RS09405 PF02653 AFA_RS09405 AFA_RS09405 PF11862 AFA_RS09405 AFA_RS09410 PF00005 ABC transporter AFA_RS09410 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_RS09415 PF00005 ABC transporter AFA_RS09425 PF02798 Glutathione S-transferase, N-terminal domain AFA_RS09425 PF14497 Glutathione S-transferase, C-terminal domain AFA_RS09430 PF00326 Prolyl oligopeptidase family AFA_RS09435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFA_RS09435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFA_RS09440 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS09445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFA_RS09445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFA_RS09450 PF00206 Lyase AFA_RS09450 PF10415 Fumarase C C-terminus AFA_RS09455 PF07995 Glucose / Sorbosone dehydrogenase AFA_RS09460 PF08241 Methyltransferase domain AFA_RS09465 PF00582 Universal stress protein family AFA_RS09470 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS09475 PF07690 Major Facilitator Superfamily AFA_RS09480 PF12796 Ankyrin repeats (3 copies) AFA_RS09485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS09485 PF03466 LysR substrate binding domain AFA_RS09490 PF13663 AFA_RS09490 AFA_RS09495 PF00122 E1-E2 ATPase AFA_RS09495 PF00403 Heavy-metal-associated domain AFA_RS09495 PF00702 haloacid dehalogenase-like hydrolase AFA_RS09500 PF11071 AFA_RS09500 AFA_RS09505 PF00589 Phage integrase family AFA_RS09510 PF11740 AFA_RS09510 AFA_RS09515 PF07731 Multicopper oxidase AFA_RS09515 PF07732 Multicopper oxidase AFA_RS09520 PF02222 ATP-grasp domain AFA_RS09530 PF03976 Polyphosphate kinase 2 (PPK2) AFA_RS09535 PF07514 Putative helicase AFA_RS09535 PF07515 Protein of unknown function (DUF1528) AFA_RS09555 PF01464 Transglycosylase SLT domain AFA_RS09560 PF11072 AFA_RS09560 AFA_RS09565 PF12696 TraM recognition site of TraD and TraG AFA_RS09570 PF14348 AFA_RS09570 AFA_RS09575 PF09686 AFA_RS09575 AFA_RS09580 PF11660 AFA_RS09580 AFA_RS09585 PF11190 AFA_RS09585 AFA_RS09590 PF11990 AFA_RS09590 AFA_RS09595 PF11444 AFA_RS09595 AFA_RS09600 PF11920 AFA_RS09600 AFA_RS09615 PF11130 AFA_RS09615 AFA_RS09620 PF07511 AFA_RS09620 AFA_RS09625 PF06834 AFA_RS09625 AFA_RS09640 PF07916 AFA_RS09640 AFA_RS09655 PF00589 Phage integrase family AFA_RS09665 PF00069 Protein kinase domain AFA_RS09675 PF02452 PemK-like protein AFA_RS09680 PF11455 AFA_RS09680 AFA_RS09690 PF10263 AFA_RS09690 AFA_RS09695 PF03703 AFA_RS09695 AFA_RS09700 PF10411 Disulfide bond isomerase protein N-terminus AFA_RS09700 PF13098 Thioredoxin-like domain AFA_RS09715 PF00816 H-NS histone family AFA_RS09720 PF12705 PD-(D/E)XK nuclease superfamily AFA_RS09725 PF00580 UvrD/REP helicase N-terminal domain AFA_RS09725 PF13361 UvrD-like helicase C-terminal domain AFA_RS09740 PF00271 Helicase conserved C-terminal domain AFA_RS09745 PF00271 Helicase conserved C-terminal domain AFA_RS09760 PF04002 RadC-like JAB domain AFA_RS09790 PF11679 AFA_RS09790 AFA_RS09795 PF12101 AFA_RS09795 AFA_RS09805 PF00350 Dynamin family AFA_RS09805 PF01381 Helix-turn-helix AFA_RS09815 PF00270 DEAD/DEAH box helicase AFA_RS09815 PF00271 Helicase conserved C-terminal domain AFA_RS09830 PF00436 Single-strand binding protein family AFA_RS09840 PF08900 AFA_RS09840 AFA_RS09860 PF11198 AFA_RS09860 AFA_RS09870 PF13614 AAA domain AFA_RS09875 PF00691 OmpA family AFA_RS09875 PF16234 AFA_RS09875 AFA_RS09885 PF03704 Bacterial transcriptional activator domain AFA_RS09885 PF13191 AAA ATPase domain AFA_RS09890 PF05036 Sporulation related domain AFA_RS09890 PF14331 AFA_RS09890 AFA_RS09895 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) AFA_RS09900 PF05936 AFA_RS09900 AFA_RS09905 PF12790 Type VI secretion lipoprotein AFA_RS09910 PF13665 AFA_RS09910 AFA_RS09915 PF12059 AFA_RS09915 AFA_RS09920 PF00805 Pentapeptide repeats (8 copies) AFA_RS09920 PF13599 Pentapeptide repeats (9 copies) AFA_RS09925 PF00805 Pentapeptide repeats (8 copies) AFA_RS09925 PF09937 AFA_RS09925 AFA_RS09925 PF13599 Pentapeptide repeats (9 copies) AFA_RS09930 PF05954 Phage late control gene D protein (GPD) AFA_RS09935 PF00004 ATPase family associated with various cellular activities (AAA) AFA_RS09935 PF02861 Clp amino terminal domain AFA_RS09935 PF07724 AAA domain (Cdc48 subfamily) AFA_RS09935 PF10431 C-terminal, D2-small domain, of ClpB protein AFA_RS09940 PF06996 AFA_RS09940 AFA_RS09945 PF05947 AFA_RS09945 AFA_RS09950 PF04965 Gene 25-like lysozyme AFA_RS09955 PF05638 Protein of unknown function (DUF796) AFA_RS09960 PF05943 AFA_RS09960 AFA_RS09965 PF05591 AFA_RS09965 AFA_RS09970 PF06812 AFA_RS09970 AFA_RS09970 PF16989 AFA_RS09970 AFA_RS09975 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS09980 PF04463 AFA_RS09980 AFA_RS09990 PF06355 Aegerolysin AFA_RS09995 PF00583 Acetyltransferase (GNAT) family AFA_RS10000 PF00589 Phage integrase family AFA_RS10005 PF07653 Variant SH3 domain AFA_RS10015 PF01292 Prokaryotic cytochrome b561 AFA_RS10020 PF04264 YceI-like domain AFA_RS10025 PF04264 YceI-like domain AFA_RS10030 PF03960 ArsC family AFA_RS10035 PF00043 Glutathione S-transferase, C-terminal domain AFA_RS10035 PF02798 Glutathione S-transferase, N-terminal domain AFA_RS10040 PF11738 Protein of unknown function (DUF3298) AFA_RS10045 PF03358 NADPH-dependent FMN reductase AFA_RS10045 PF10982 Protein of unknown function (DUF2789) AFA_RS10050 PF12796 Ankyrin repeats (3 copies) AFA_RS10055 PF01026 TatD related DNase AFA_RS10060 PF13177 DNA polymerase III, delta subunit AFA_RS10070 PF02618 YceG-like family AFA_RS10075 PF01571 Aminomethyltransferase folate-binding domain AFA_RS10080 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_RS10080 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFA_RS10085 PF16113 AFA_RS10085 AFA_RS10090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS10090 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS10090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_RS10095 PF01424 R3H domain AFA_RS10095 PF03658 RnfH family Ubiquitin AFA_RS10100 PF03364 Polyketide cyclase / dehydrase and lipid transport AFA_RS10105 PF01668 SmpB protein AFA_RS10110 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS10120 PF00391 PEP-utilising enzyme, mobile domain AFA_RS10120 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFA_RS10120 PF02896 PEP-utilising enzyme, TIM barrel domain AFA_RS10125 PF03618 AFA_RS10125 AFA_RS10130 PF01425 Amidase AFA_RS10135 PF00588 SpoU rRNA Methylase family AFA_RS10140 PF01351 Ribonuclease HII AFA_RS10145 PF02684 AFA_RS10145 AFA_RS10150 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_RS10150 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AFA_RS10155 PF07977 FabA-like domain AFA_RS10160 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_RS10160 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AFA_RS10160 PF14602 Hexapeptide repeat of succinyl-transferase AFA_RS10165 PF03938 Outer membrane protein (OmpH-like) AFA_RS10170 PF01103 Surface antigen AFA_RS10170 PF07244 Surface antigen variable number repeat AFA_RS10175 PF02163 Peptidase family M50 AFA_RS10175 PF13180 PDZ domain AFA_RS10180 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFA_RS10180 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AFA_RS10180 PF13288 DXP reductoisomerase C-terminal domain AFA_RS10185 PF01148 Cytidylyltransferase family AFA_RS10190 PF01255 Putative undecaprenyl diphosphate synthase AFA_RS10195 PF01765 Ribosome recycling factor AFA_RS10200 PF00696 Amino acid kinase family AFA_RS10205 PF00889 Elongation factor TS AFA_RS10210 PF00318 Ribosomal protein S2 AFA_RS10215 PF00557 Metallopeptidase family M24 AFA_RS10220 PF01909 Nucleotidyltransferase domain AFA_RS10220 PF01966 HD domain AFA_RS10220 PF08335 GlnD PII-uridylyltransferase AFA_RS10225 PF01914 AFA_RS10225 AFA_RS10230 PF02600 Disulfide bond formation protein DsbB AFA_RS10235 PF08020 Protein of unknown function (DUF1706) AFA_RS10240 PF00156 Phosphoribosyl transferase domain AFA_RS10240 PF13522 Glutamine amidotransferase domain AFA_RS10245 PF02674 AFA_RS10245 AFA_RS10250 PF05036 Sporulation related domain AFA_RS10255 PF02875 Mur ligase family, glutamate ligase domain AFA_RS10255 PF08245 Mur ligase middle domain AFA_RS10260 PF00364 Biotin-requiring enzyme AFA_RS10260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFA_RS10260 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS10265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFA_RS10265 PF00364 Biotin-requiring enzyme AFA_RS10265 PF02817 e3 binding domain AFA_RS10270 PF00456 Transketolase, thiamine diphosphate binding domain AFA_RS10275 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS10275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS10275 PF08448 PAS fold AFA_RS10275 PF13188 PAS domain AFA_RS10280 PF00072 Response regulator receiver domain AFA_RS10280 PF00196 Bacterial regulatory proteins, luxR family AFA_RS10285 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFA_RS10285 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFA_RS10290 PF01432 Peptidase family M3 AFA_RS10295 PF02630 SCO1/SenC AFA_RS10300 PF00009 Elongation factor Tu GTP binding domain AFA_RS10300 PF00679 Elongation factor G C-terminus AFA_RS10300 PF03144 Elongation factor Tu domain 2 AFA_RS10300 PF03764 Elongation factor G, domain IV AFA_RS10300 PF14492 Elongation Factor G, domain II AFA_RS10305 PF13472 GDSL-like Lipase/Acylhydrolase family AFA_RS10310 PF12840 Helix-turn-helix domain AFA_RS10315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFA_RS10315 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS10320 PF13411 MerR HTH family regulatory protein AFA_RS10325 PF06808 AFA_RS10325 AFA_RS10330 PF04290 AFA_RS10330 AFA_RS10335 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS10340 PF01220 Dehydroquinase class II AFA_RS10345 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS10350 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS10355 PF12697 Alpha/beta hydrolase family AFA_RS10360 PF02515 CoA-transferase family III AFA_RS10365 PF01614 Bacterial transcriptional regulator AFA_RS10365 PF09339 IclR helix-turn-helix domain AFA_RS10370 PF00108 Thiolase, N-terminal domain AFA_RS10370 PF02803 Thiolase, C-terminal domain AFA_RS10375 PF01796 AFA_RS10375 AFA_RS10380 PF00561 alpha/beta hydrolase fold AFA_RS10385 PF00881 Nitroreductase family AFA_RS10390 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AFA_RS10395 PF02321 Outer membrane efflux protein AFA_RS10400 PF00873 AcrB/AcrD/AcrF family AFA_RS10405 PF16576 AFA_RS10405 AFA_RS10410 PF00005 ABC transporter AFA_RS10415 PF02653 AFA_RS10415 AFA_RS10420 PF04392 ABC transporter substrate binding protein AFA_RS10430 PF00108 Thiolase, N-terminal domain AFA_RS10430 PF02803 Thiolase, C-terminal domain AFA_RS10435 PF00108 Thiolase, N-terminal domain AFA_RS10435 PF02803 Thiolase, C-terminal domain AFA_RS10440 PF00582 Universal stress protein family AFA_RS10445 PF13714 Phosphoenolpyruvate phosphomutase AFA_RS10450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS10450 PF03466 LysR substrate binding domain AFA_RS10455 PF01276 Orn/Lys/Arg decarboxylase, major domain AFA_RS10455 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AFA_RS10455 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AFA_RS10465 PF03372 Endonuclease/Exonuclease/phosphatase family AFA_RS10475 PF00625 Guanylate kinase AFA_RS10480 PF01192 RNA polymerase Rpb6 AFA_RS10485 PF02824 TGS domain AFA_RS10485 PF04607 Region found in RelA / SpoT proteins AFA_RS10485 PF13291 ACT domain AFA_RS10485 PF13328 HD domain AFA_RS10490 PF05437 AFA_RS10490 AFA_RS10495 PF03591 AFA_RS10495 AFA_RS10500 PF01551 Peptidase family M23 AFA_RS10505 PF00639 PPIC-type PPIASE domain AFA_RS10505 PF13624 SurA N-terminal domain AFA_RS10510 PF03009 Glycerophosphoryl diester phosphodiesterase family AFA_RS10515 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ AFA_RS10520 PF00849 RNA pseudouridylate synthase AFA_RS10520 PF01479 S4 domain AFA_RS10525 PF04345 Chorismate lyase AFA_RS10530 PF07690 Major Facilitator Superfamily AFA_RS10535 PF00248 Aldo/keto reductase family AFA_RS10540 PF00543 Nitrogen regulatory protein P-II AFA_RS10545 PF00924 Mechanosensitive ion channel AFA_RS10550 PF00206 Lyase AFA_RS10550 PF14698 Argininosuccinate lyase C-terminal AFA_RS10555 PF13166 AFA_RS10555 AFA_RS10560 PF01804 Penicillin amidase AFA_RS10565 PF01266 FAD dependent oxidoreductase AFA_RS10570 PF00440 Bacterial regulatory proteins, tetR family AFA_RS10570 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFA_RS10575 PF05958 tRNA (Uracil-5-)-methyltransferase AFA_RS10580 PF01476 LysM domain AFA_RS10580 PF01551 Peptidase family M23 AFA_RS10585 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AFA_RS10590 PF01975 Survival protein SurE AFA_RS10595 PF02660 AFA_RS10595 AFA_RS10600 PF00814 Glycoprotease family AFA_RS10605 PF00860 Permease family AFA_RS10610 PF00085 Thioredoxin AFA_RS10615 PF09630 Domain of unknown function (DUF2024) AFA_RS10620 PF08534 Redoxin AFA_RS10625 PF01205 Uncharacterized protein family UPF0029 AFA_RS10625 PF09186 Domain of unknown function (DUF1949) AFA_RS10630 PF00005 ABC transporter AFA_RS10630 PF12848 ABC transporter AFA_RS10635 PF02016 LD-carboxypeptidase AFA_RS10640 PF14437 AFA_RS10640 AFA_RS10645 PF00005 ABC transporter AFA_RS10650 PF01061 AFA_RS10650 AFA_RS10655 PF08269 Cache domain AFA_RS10660 PF06808 AFA_RS10660 AFA_RS10665 PF04290 AFA_RS10665 AFA_RS10670 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS10675 PF01266 FAD dependent oxidoreductase AFA_RS10680 PF12680 SnoaL-like domain AFA_RS10685 PF05690 Thiazole biosynthesis protein ThiG AFA_RS10690 PF00205 Thiamine pyrophosphate enzyme, central domain AFA_RS10690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_RS10690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFA_RS10695 PF07728 AAA domain (dynein-related subfamily) AFA_RS10695 PF12556 AFA_RS10695 AFA_RS10700 PF06213 AFA_RS10700 AFA_RS10700 PF11775 AFA_RS10700 AFA_RS10705 PF01614 Bacterial transcriptional regulator AFA_RS10705 PF09339 IclR helix-turn-helix domain AFA_RS10710 PF01515 Phosphate acetyl/butaryl transferase AFA_RS10715 PF01925 AFA_RS10715 AFA_RS10720 PF00583 Acetyltransferase (GNAT) family AFA_RS10725 PF04461 Protein of unknown function (DUF520) AFA_RS10730 PF00501 AMP-binding enzyme AFA_RS10730 PF13193 AMP-binding enzyme C-terminal domain AFA_RS10735 PF02537 AFA_RS10735 AFA_RS10740 PF00117 Glutamine amidotransferase class-I AFA_RS10745 PF02311 AraC-like ligand binding domain AFA_RS10745 PF12833 Helix-turn-helix domain AFA_RS10750 PF13593 SBF-like CPA transporter family (DUF4137) AFA_RS10760 PF00578 AhpC/TSA family AFA_RS10760 PF01790 AFA_RS10760 AFA_RS10765 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFA_RS10770 PF06808 AFA_RS10770 AFA_RS10775 PF04290 AFA_RS10775 AFA_RS10780 PF01416 tRNA pseudouridine synthase AFA_RS10785 PF01476 LysM domain AFA_RS10790 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFA_RS10790 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFA_RS10795 PF00180 Isocitrate/isopropylmalate dehydrogenase AFA_RS10800 PF00694 Aconitase C-terminal domain AFA_RS10805 PF00330 Aconitase family (aconitate hydratase) AFA_RS10810 PF02627 Carboxymuconolactone decarboxylase family AFA_RS10815 PF03928 Domain of unknown function (DUF336) AFA_RS10820 PF00072 Response regulator receiver domain AFA_RS10820 PF00196 Bacterial regulatory proteins, luxR family AFA_RS10825 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS10830 PF01435 Peptidase family M48 AFA_RS10835 PF01264 Chorismate synthase AFA_RS10840 PF02696 AFA_RS10840 AFA_RS10845 PF09842 AFA_RS10845 AFA_RS10850 PF03631 AFA_RS10850 AFA_RS10855 PF00571 CBS domain AFA_RS10860 PF01207 Dihydrouridine synthase (Dus) AFA_RS10865 PF01636 Phosphotransferase enzyme family AFA_RS10880 PF00482 Type II secretion system (T2SS), protein F AFA_RS10885 PF00482 Type II secretion system (T2SS), protein F AFA_RS10890 PF00437 Type II/IV secretion system protein AFA_RS10890 PF00498 FHA domain AFA_RS10895 PF00263 AFA_RS10895 AFA_RS10895 PF13629 AFA_RS10895 AFA_RS10900 PF08666 SAF domain AFA_RS10900 PF16976 AFA_RS10900 AFA_RS10925 PF00593 TonB dependent receptor AFA_RS10925 PF07715 TonB-dependent Receptor Plug Domain AFA_RS10930 PF04773 FecR protein AFA_RS10930 PF16220 AFA_RS10930 AFA_RS10930 PF16344 AFA_RS10930 AFA_RS10935 PF04542 Sigma-70 region 2 AFA_RS10935 PF08281 Sigma-70, region 4 AFA_RS10940 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFA_RS10945 PF00719 Inorganic pyrophosphatase AFA_RS10950 PF07219 AFA_RS10950 AFA_RS10950 PF13181 Tetratricopeptide repeat AFA_RS10955 PF04375 AFA_RS10955 AFA_RS10960 PF02602 Uroporphyrinogen-III synthase HemD AFA_RS10965 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFA_RS10965 PF03900 Porphobilinogen deaminase, C-terminal domain AFA_RS10970 PF03741 AFA_RS10970 AFA_RS10975 PF00549 CoA-ligase AFA_RS10975 PF02629 CoA binding domain AFA_RS10980 PF00549 CoA-ligase AFA_RS10980 PF08442 ATP-grasp domain AFA_RS10985 PF11136 AFA_RS10985 AFA_RS10990 PF01717 Cobalamin-independent synthase, Catalytic domain AFA_RS10990 PF08267 Cobalamin-independent synthase, N-terminal domain AFA_RS10995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS10995 PF03466 LysR substrate binding domain AFA_RS11000 PF02631 RecX family AFA_RS11005 PF00154 recA bacterial DNA recombination protein AFA_RS11010 PF00072 Response regulator receiver domain AFA_RS11010 PF00486 Transcriptional regulatory protein, C terminal AFA_RS11015 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS11015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS11015 PF08521 AFA_RS11015 AFA_RS11020 PF00083 Sugar (and other) transporter AFA_RS11025 PF04381 Putative exonuclease, RdgC AFA_RS11030 PF12625 AFA_RS11030 AFA_RS11030 PF12833 Helix-turn-helix domain AFA_RS11035 PF00501 AMP-binding enzyme AFA_RS11035 PF13193 AMP-binding enzyme C-terminal domain AFA_RS11040 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS11045 PF04341 AFA_RS11045 AFA_RS11050 PF00474 Sodium:solute symporter family AFA_RS11055 PF00171 Aldehyde dehydrogenase family AFA_RS11060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFA_RS11060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFA_RS11075 PF00905 Penicillin binding protein transpeptidase domain AFA_RS11075 PF00912 Transglycosylase AFA_RS11075 PF06832 AFA_RS11075 AFA_RS11080 PF00207 Alpha-2-macroglobulin family AFA_RS11080 PF01835 MG2 domain AFA_RS11080 PF07703 Alpha-2-macroglobulin family N-terminal region AFA_RS11080 PF11974 Alpha-2-macroglobulin MG1 domain AFA_RS11090 PF03060 Nitronate monooxygenase AFA_RS11095 PF04055 Radical SAM superfamily AFA_RS11095 PF06969 HemN C-terminal domain AFA_RS11100 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFA_RS11100 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFA_RS11100 PF04039 AFA_RS11100 AFA_RS11100 PF13244 AFA_RS11100 AFA_RS11105 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFA_RS11110 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFA_RS11115 PF01899 AFA_RS11115 AFA_RS11120 PF04066 AFA_RS11120 AFA_RS11125 PF03334 AFA_RS11125 AFA_RS11135 PF02705 AFA_RS11135 AFA_RS11140 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS11140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS11145 PF00072 Response regulator receiver domain AFA_RS11145 PF00486 Transcriptional regulatory protein, C terminal AFA_RS11150 PF02472 Biopolymer transport protein ExbD/TolR AFA_RS11155 PF01618 AFA_RS11155 AFA_RS11160 PF03544 Gram-negative bacterial TonB protein C-terminal AFA_RS11160 PF16031 AFA_RS11160 AFA_RS11165 PF00005 ABC transporter AFA_RS11165 PF12857 AFA_RS11165 AFA_RS11170 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS11175 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS11180 PF13531 Bacterial extracellular solute-binding protein AFA_RS11185 PF13649 Methyltransferase domain AFA_RS11195 PF00313 'Cold-shock' DNA-binding domain AFA_RS11215 PF00216 Bacterial DNA-binding protein AFA_RS11220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFA_RS11225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS11230 PF02239 Cytochrome D1 heme domain AFA_RS11240 PF13404 AsnC-type helix-turn-helix domain AFA_RS11250 PF04055 Radical SAM superfamily AFA_RS11250 PF13186 Iron-sulfur cluster-binding domain AFA_RS11250 PF13353 4Fe-4S single cluster domain AFA_RS11260 PF10414 Sirohaem synthase dimerisation region AFA_RS11260 PF13241 Putative NAD(P)-binding AFA_RS11260 PF14824 Sirohaem biosynthesis protein central AFA_RS11265 PF00034 Cytochrome c AFA_RS11270 PF02239 Cytochrome D1 heme domain AFA_RS11270 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS11275 PF00392 Bacterial regulatory proteins, gntR family AFA_RS11280 PF01053 Cys/Met metabolism PLP-dependent enzyme AFA_RS11285 PF00588 SpoU rRNA Methylase family AFA_RS11285 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFA_RS11290 PF00575 S1 RNA binding domain AFA_RS11290 PF00773 RNB domain AFA_RS11290 PF08206 Ribonuclease B OB domain AFA_RS11300 PF00403 Heavy-metal-associated domain AFA_RS11320 PF04954 Siderophore-interacting protein AFA_RS11320 PF08021 Siderophore-interacting FAD-binding domain AFA_RS11325 PF03551 Transcriptional regulator PadR-like family AFA_RS11335 PF00890 FAD binding domain AFA_RS11335 PF04820 Tryptophan halogenase AFA_RS11340 PF01478 Type IV leader peptidase family AFA_RS11345 PF13598 AFA_RS11345 AFA_RS11350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS11350 PF03466 LysR substrate binding domain AFA_RS11355 PF00005 ABC transporter AFA_RS11360 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS11365 PF13419 Haloacid dehalogenase-like hydrolase AFA_RS11370 PF13343 Bacterial extracellular solute-binding protein AFA_RS11375 PF01266 FAD dependent oxidoreductase AFA_RS11380 PF00583 Acetyltransferase (GNAT) family AFA_RS11390 PF01738 Dienelactone hydrolase family AFA_RS11395 PF12843 AFA_RS11395 AFA_RS11400 PF02798 Glutathione S-transferase, N-terminal domain AFA_RS11400 PF14497 Glutathione S-transferase, C-terminal domain AFA_RS11405 PF02566 OsmC-like protein AFA_RS11410 PF02678 Pirin AFA_RS11410 PF05726 Pirin C-terminal cupin domain AFA_RS11415 PF13532 2OG-Fe(II) oxygenase superfamily AFA_RS11420 PF00795 Carbon-nitrogen hydrolase AFA_RS11425 PF07690 Major Facilitator Superfamily AFA_RS11430 PF07690 Major Facilitator Superfamily AFA_RS11435 PF02311 AraC-like ligand binding domain AFA_RS11435 PF12833 Helix-turn-helix domain AFA_RS11440 PF03594 AFA_RS11440 AFA_RS11445 PF11450 AFA_RS11445 AFA_RS11450 PF03746 LamB/YcsF family AFA_RS11455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS11455 PF03466 LysR substrate binding domain AFA_RS11460 PF00941 FAD binding domain in molybdopterin dehydrogenase AFA_RS11460 PF01799 [2Fe-2S] binding domain AFA_RS11460 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFA_RS11465 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_RS11465 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFA_RS11470 PF02625 XdhC and CoxI family AFA_RS11470 PF13478 XdhC Rossmann domain AFA_RS11475 PF01979 Amidohydrolase family AFA_RS11480 PF04191 Phospholipid methyltransferase AFA_RS11485 PF00072 Response regulator receiver domain AFA_RS11485 PF00486 Transcriptional regulatory protein, C terminal AFA_RS11490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS11495 PF00140 Sigma-70 factor, region 1 AFA_RS11495 PF03979 Sigma-70 factor, region 1 AFA_RS11495 PF04539 Sigma-70 region 3 AFA_RS11495 PF04542 Sigma-70 region 2 AFA_RS11495 PF04545 Sigma-70, region 4 AFA_RS11495 PF04546 Sigma-70, non-essential region AFA_RS11500 PF01807 CHC2 zinc finger AFA_RS11500 PF08275 DNA primase catalytic core, N-terminal domain AFA_RS11500 PF08278 DNA primase DnaG DnaB-binding AFA_RS11500 PF10410 DnaB-helicase binding domain of primase AFA_RS11500 PF13662 Toprim domain AFA_RS11505 PF01165 Ribosomal protein S21 AFA_RS11510 PF00156 Phosphoribosyl transferase domain AFA_RS11515 PF00709 Adenylosuccinate synthetase AFA_RS11520 PF13393 Histidyl-tRNA synthetase AFA_RS11525 PF01145 SPFH domain / Band 7 family AFA_RS11530 PF01145 SPFH domain / Band 7 family AFA_RS11530 PF12221 AFA_RS11530 AFA_RS11535 PF01926 50S ribosome-binding GTPase AFA_RS11535 PF13167 AFA_RS11535 AFA_RS11535 PF16360 AFA_RS11535 AFA_RS11540 PF17209 AFA_RS11540 AFA_RS11545 PF00155 Aminotransferase class I and II AFA_RS11550 PF01926 50S ribosome-binding GTPase AFA_RS11550 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFA_RS11555 PF13360 PQQ-like domain AFA_RS11560 PF09976 Tetratricopeptide repeat AFA_RS11565 PF03129 Anticodon binding domain AFA_RS11565 PF13393 Histidyl-tRNA synthetase AFA_RS11570 PF04551 GcpE protein AFA_RS11575 PF13413 Helix-turn-helix domain AFA_RS11580 PF04055 Radical SAM superfamily AFA_RS11585 PF00334 Nucleoside diphosphate kinase AFA_RS11590 PF00133 tRNA synthetases class I (I, L, M and V) AFA_RS11590 PF08264 Anticodon-binding domain of tRNA AFA_RS11590 PF10458 Valyl tRNA synthetase tRNA binding arm AFA_RS11595 PF13847 Methyltransferase domain AFA_RS11600 PF01746 tRNA (Guanine-1)-methyltransferase AFA_RS11605 PF01782 RimM N-terminal domain AFA_RS11610 PF00886 Ribosomal protein S16 AFA_RS11615 PF01206 Sulfurtransferase TusA AFA_RS11620 PF01411 tRNA synthetases class II (A) AFA_RS11620 PF02272 DHHA1 domain AFA_RS11620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFA_RS11625 PF01522 Polysaccharide deacetylase AFA_RS11630 PF00392 Bacterial regulatory proteins, gntR family AFA_RS11630 PF07729 FCD domain AFA_RS11635 PF00576 HIUase/Transthyretin family AFA_RS11640 PF06181 AFA_RS11640 AFA_RS11655 PF03524 Conjugal transfer protein AFA_RS11655 PF10671 Toxin co-regulated pilus biosynthesis protein Q AFA_RS11660 PF13416 Bacterial extracellular solute-binding protein AFA_RS11665 PF01266 FAD dependent oxidoreductase AFA_RS11670 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS11670 PF00175 Oxidoreductase NAD-binding domain AFA_RS11670 PF00970 Oxidoreductase FAD-binding domain AFA_RS11675 PF00521 DNA gyrase/topoisomerase IV, subunit A AFA_RS11675 PF03989 DNA gyrase C-terminal domain, beta-propeller AFA_RS11680 PF00204 DNA gyrase B AFA_RS11680 PF00986 DNA gyrase B subunit, carboxyl terminus AFA_RS11680 PF01751 Toprim domain AFA_RS11680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS11685 PF00085 Thioredoxin AFA_RS11690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFA_RS11690 PF07497 Rho termination factor, RNA-binding domain AFA_RS11690 PF07498 Rho termination factor, N-terminal domain AFA_RS11695 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFA_RS11695 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFA_RS11700 PF13354 Beta-lactamase enzyme family AFA_RS11705 PF05170 AFA_RS11705 AFA_RS11705 PF13116 AFA_RS11705 AFA_RS11705 PF13502 AFA_RS11705 AFA_RS11710 PF03710 Glutamate-ammonia ligase adenylyltransferase AFA_RS11710 PF08335 GlnD PII-uridylyltransferase AFA_RS11715 PF02677 AFA_RS11715 AFA_RS11720 PF00004 ATPase family associated with various cellular activities (AAA) AFA_RS11720 PF02861 Clp amino terminal domain AFA_RS11720 PF07724 AAA domain (Cdc48 subfamily) AFA_RS11720 PF10431 C-terminal, D2-small domain, of ClpB protein AFA_RS11725 PF00027 Cyclic nucleotide-binding domain AFA_RS11725 PF13545 Crp-like helix-turn-helix domain AFA_RS11735 PF05751 AFA_RS11735 AFA_RS11740 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AFA_RS11740 PF12801 AFA_RS11740 AFA_RS11740 PF13746 4Fe-4S dicluster domain AFA_RS11745 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS11745 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AFA_RS11750 PF05545 AFA_RS11750 AFA_RS11755 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AFA_RS11760 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_RS11765 PF03597 AFA_RS11765 AFA_RS11770 PF00122 E1-E2 ATPase AFA_RS11780 PF00463 Isocitrate lyase family AFA_RS11785 PF14489 QueF-like protein AFA_RS11785 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AFA_RS11790 PF07690 Major Facilitator Superfamily AFA_RS11795 PF01066 CDP-alcohol phosphatidyltransferase AFA_RS11800 PF01541 GIY-YIG catalytic domain AFA_RS11800 PF02151 UvrB/uvrC motif AFA_RS11800 PF08459 UvrC Helix-hairpin-helix N-terminal AFA_RS11800 PF14520 Helix-hairpin-helix domain AFA_RS11805 PF00933 Glycosyl hydrolase family 3 N terminal domain AFA_RS11810 PF01648 4'-phosphopantetheinyl transferase superfamily AFA_RS11815 PF00501 AMP-binding enzyme AFA_RS11815 PF14535 AMP-binding enzyme C-terminal domain AFA_RS11820 PF03061 Thioesterase superfamily AFA_RS11825 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS11830 PF00171 Aldehyde dehydrogenase family AFA_RS11835 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS11835 PF00175 Oxidoreductase NAD-binding domain AFA_RS11835 PF00970 Oxidoreductase FAD-binding domain AFA_RS11840 PF01883 Domain of unknown function DUF59 AFA_RS11845 PF05138 Phenylacetic acid catabolic protein AFA_RS11850 PF06243 Phenylacetic acid degradation B AFA_RS11855 PF05138 Phenylacetic acid catabolic protein AFA_RS11860 PF00929 Exonuclease AFA_RS11865 PF01435 Peptidase family M48 AFA_RS11865 PF16491 AFA_RS11865 AFA_RS11870 PF03193 Protein of unknown function, DUF258 AFA_RS11875 PF00293 NUDIX domain AFA_RS11880 PF01245 Ribosomal protein L19 AFA_RS11895 PF00578 AhpC/TSA family AFA_RS11895 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFA_RS11900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS11900 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS11900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_RS11900 PF12418 AFA_RS11900 AFA_RS11900 PF12806 AFA_RS11900 AFA_RS11905 PF00766 Electron transfer flavoprotein FAD-binding domain AFA_RS11905 PF01012 Electron transfer flavoprotein domain AFA_RS11910 PF01012 Electron transfer flavoprotein domain AFA_RS11915 PF00850 Histone deacetylase domain AFA_RS11920 PF13406 Transglycosylase SLT domain AFA_RS11925 PF00291 Pyridoxal-phosphate dependent enzyme AFA_RS11930 PF12836 Helix-hairpin-helix motif AFA_RS11935 PF01370 NAD dependent epimerase/dehydratase family AFA_RS11940 PF00294 pfkB family carbohydrate kinase AFA_RS11950 PF06305 AFA_RS11950 AFA_RS11955 PF00216 Bacterial DNA-binding protein AFA_RS11960 PF00575 S1 RNA binding domain AFA_RS11965 PF02224 Cytidylate kinase AFA_RS11970 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFA_RS11975 PF02153 Prephenate dehydrogenase AFA_RS11980 PF00800 Prephenate dehydratase AFA_RS11980 PF01817 Chorismate mutase type II AFA_RS11980 PF01842 ACT domain AFA_RS11985 PF00266 Aminotransferase class-V AFA_RS11990 PF00521 DNA gyrase/topoisomerase IV, subunit A AFA_RS11990 PF03989 DNA gyrase C-terminal domain, beta-propeller AFA_RS11995 PF00691 OmpA family AFA_RS12000 PF13489 Methyltransferase domain AFA_RS12005 PF13419 Haloacid dehalogenase-like hydrolase AFA_RS12010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS12010 PF03466 LysR substrate binding domain AFA_RS12020 PF00037 4Fe-4S binding domain AFA_RS12020 PF11953 Domain of unknown function (DUF3470) AFA_RS12025 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AFA_RS12030 PF00593 TonB dependent receptor AFA_RS12030 PF07715 TonB-dependent Receptor Plug Domain AFA_RS12045 PF00199 Catalase AFA_RS12045 PF06628 Catalase-related immune-responsive AFA_RS12050 PF00149 Calcineurin-like phosphoesterase AFA_RS12055 PF08713 DNA alkylation repair enzyme AFA_RS12060 PF01047 MarR family AFA_RS12065 PF00155 Aminotransferase class I and II AFA_RS12070 PF00440 Bacterial regulatory proteins, tetR family AFA_RS12075 PF01575 MaoC like domain AFA_RS12080 PF00583 Acetyltransferase (GNAT) family AFA_RS12085 PF01810 AFA_RS12085 AFA_RS12090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS12090 PF03466 LysR substrate binding domain AFA_RS12095 PF00155 Aminotransferase class I and II AFA_RS12095 PF00392 Bacterial regulatory proteins, gntR family AFA_RS12100 PF04299 Putative FMN-binding domain AFA_RS12105 PF02798 Glutathione S-transferase, N-terminal domain AFA_RS12105 PF14497 Glutathione S-transferase, C-terminal domain AFA_RS12120 PF00816 H-NS histone family AFA_RS12125 PF07424 AFA_RS12125 AFA_RS12130 PF01464 Transglycosylase SLT domain AFA_RS12145 PF05101 AFA_RS12145 AFA_RS12150 PF03135 AFA_RS12150 AFA_RS12160 PF07996 Type IV secretion system proteins AFA_RS12165 PF04610 AFA_RS12165 AFA_RS12175 PF04335 VirB8 protein AFA_RS12180 PF03524 Conjugal transfer protein AFA_RS12185 PF03743 Bacterial conjugation TrbI-like protein AFA_RS12190 PF00437 Type II/IV secretion system protein AFA_RS12230 PF10412 Type IV secretion-system coupling protein DNA-binding domain AFA_RS12235 PF08751 TrwC relaxase AFA_RS12235 PF13604 AAA domain AFA_RS12245 PF12441 AFA_RS12245 AFA_RS12250 PF04365 Protein of unknown function (DUF497) AFA_RS12255 PF00436 Single-strand binding protein family AFA_RS12260 PF03230 Antirestriction protein AFA_RS12280 PF02195 ParB-like nuclease domain AFA_RS12285 PF02384 N-6 DNA Methylase AFA_RS12285 PF12161 HsdM N-terminal domain AFA_RS12290 PF01420 Type I restriction modification DNA specificity domain AFA_RS12295 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFA_RS12295 PF04851 Type III restriction enzyme, res subunit AFA_RS12300 PF01610 AFA_RS12300 AFA_RS12300 PF13542 AFA_RS12300 AFA_RS12300 PF14690 AFA_RS12300 AFA_RS12305 PF01526 AFA_RS12305 AFA_RS12305 PF13700 AFA_RS12305 AFA_RS12310 PF00239 Resolvase, N terminal domain AFA_RS12310 PF02796 Helix-turn-helix domain of resolvase AFA_RS12315 PF02321 Outer membrane efflux protein AFA_RS12320 PF01322 Cytochrome C' AFA_RS12325 PF00005 ABC transporter AFA_RS12330 PF02687 AFA_RS12330 AFA_RS12330 PF12704 MacB-like periplasmic core domain AFA_RS12335 PF16576 AFA_RS12335 AFA_RS12340 PF00440 Bacterial regulatory proteins, tetR family AFA_RS12340 PF08359 YsiA-like protein, C-terminal region AFA_RS12345 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AFA_RS12350 PF00313 'Cold-shock' DNA-binding domain AFA_RS12360 PF01926 50S ribosome-binding GTPase AFA_RS12370 PF15943 AFA_RS12370 AFA_RS12375 PF00589 Phage integrase family AFA_RS12375 PF12167 AFA_RS12375 AFA_RS12375 PF14659 Phage integrase, N-terminal SAM-like domain AFA_RS12385 PF00375 Sodium:dicarboxylate symporter family AFA_RS12390 PF01810 AFA_RS12390 AFA_RS12400 PF05014 Nucleoside 2-deoxyribosyltransferase AFA_RS12405 PF01380 SIS domain AFA_RS12410 PF04341 AFA_RS12410 AFA_RS12415 PF00474 Sodium:solute symporter family AFA_RS12420 PF00072 Response regulator receiver domain AFA_RS12420 PF00196 Bacterial regulatory proteins, luxR family AFA_RS12425 PF00072 Response regulator receiver domain AFA_RS12425 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS12425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS12425 PF12860 AFA_RS12425 AFA_RS12430 PF01747 ATP-sulfurylase AFA_RS12430 PF14306 PUA-like domain AFA_RS12435 PF07690 Major Facilitator Superfamily AFA_RS12440 PF00144 Beta-lactamase AFA_RS12445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS12445 PF03466 LysR substrate binding domain AFA_RS12450 PF01564 Spermine/spermidine synthase AFA_RS12450 PF02675 S-adenosylmethionine decarboxylase AFA_RS12455 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS12455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS12460 PF00072 Response regulator receiver domain AFA_RS12460 PF12728 Helix-turn-helix domain AFA_RS12465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFA_RS12465 PF08447 PAS fold AFA_RS12470 PF01169 AFA_RS12470 AFA_RS12475 PF13231 AFA_RS12475 AFA_RS12480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS12480 PF03466 LysR substrate binding domain AFA_RS12485 PF02525 Flavodoxin-like fold AFA_RS12490 PF00925 GTP cyclohydrolase II AFA_RS12500 PF01292 Prokaryotic cytochrome b561 AFA_RS12505 PF03109 AFA_RS12505 AFA_RS12510 PF04228 AFA_RS12510 AFA_RS12520 PF00543 Nitrogen regulatory protein P-II AFA_RS12525 PF00909 Ammonium Transporter Family AFA_RS12530 PF01322 Cytochrome C' AFA_RS12535 PF00206 Lyase AFA_RS12535 PF08328 Adenylosuccinate lyase C-terminal AFA_RS12540 PF13410 Glutathione S-transferase, C-terminal domain AFA_RS12540 PF13417 Glutathione S-transferase, N-terminal domain AFA_RS12545 PF12833 Helix-turn-helix domain AFA_RS12550 PF07859 alpha/beta hydrolase fold AFA_RS12555 PF01925 AFA_RS12555 AFA_RS12560 PF03054 tRNA methyl transferase AFA_RS12565 PF01565 FAD binding domain AFA_RS12565 PF02913 FAD linked oxidases, C-terminal domain AFA_RS12570 PF00793 DAHP synthetase I family AFA_RS12575 PF04328 AFA_RS12575 AFA_RS12580 PF02554 AFA_RS12580 AFA_RS12580 PF13722 AFA_RS12580 AFA_RS12585 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_RS12590 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS12595 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS12600 PF00005 ABC transporter AFA_RS12605 PF09998 AFA_RS12605 AFA_RS12615 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AFA_RS12620 PF06339 AFA_RS12620 AFA_RS12625 PF00202 Aminotransferase class-III AFA_RS12630 PF00583 Acetyltransferase (GNAT) family AFA_RS12635 PF01047 MarR family AFA_RS12645 PF00892 EamA-like transporter family AFA_RS12650 PF01523 Putative modulator of DNA gyrase AFA_RS12655 PF00816 H-NS histone family AFA_RS12660 PF13590 Domain of unknown function (DUF4136) AFA_RS12665 PF01433 Peptidase family M1 AFA_RS12665 PF11940 Domain of unknown function (DUF3458) AFA_RS12665 PF17432 AFA_RS12665 AFA_RS12670 PF00316 Fructose-1-6-bisphosphatase AFA_RS12675 PF00107 Zinc-binding dehydrogenase AFA_RS12675 PF08240 Alcohol dehydrogenase GroES-like domain AFA_RS12680 PF00892 EamA-like transporter family AFA_RS12685 PF00180 Isocitrate/isopropylmalate dehydrogenase AFA_RS12690 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFA_RS12695 PF05872 AFA_RS12695 AFA_RS12700 PF01709 Transcriptional regulator AFA_RS12705 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFA_RS12705 PF02843 Phosphoribosylglycinamide synthetase, C domain AFA_RS12705 PF02844 Phosphoribosylglycinamide synthetase, N domain AFA_RS12710 PF01218 Coproporphyrinogen III oxidase AFA_RS12715 PF01467 Cytidylyltransferase AFA_RS12720 PF02410 Oligomerisation domain AFA_RS12725 PF02590 Predicted SPOUT methyltransferase AFA_RS12730 PF02545 Maf-like protein AFA_RS12735 PF13098 Thioredoxin-like domain AFA_RS12745 PF06629 AFA_RS12745 AFA_RS12750 PF01253 Translation initiation factor SUI1 AFA_RS12755 PF06097 AFA_RS12755 AFA_RS12760 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_RS12760 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFA_RS12765 PF02798 Glutathione S-transferase, N-terminal domain AFA_RS12770 PF02401 LytB protein AFA_RS12775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFA_RS12780 PF04002 RadC-like JAB domain AFA_RS12785 PF01197 Ribosomal protein L31 AFA_RS12795 PF01554 MatE AFA_RS12800 PF00005 ABC transporter AFA_RS12805 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS12810 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFA_RS12815 PF02353 Mycolic acid cyclopropane synthetase AFA_RS12820 PF07690 Major Facilitator Superfamily AFA_RS12825 PF00830 Ribosomal L28 family AFA_RS12830 PF00471 Ribosomal protein L33 AFA_RS12835 PF00133 tRNA synthetases class I (I, L, M and V) AFA_RS12835 PF08264 Anticodon-binding domain of tRNA AFA_RS12835 PF09334 tRNA synthetases class I (M) AFA_RS12835 PF13603 Leucyl-tRNA synthetase, Domain 2 AFA_RS12840 PF04390 Lipopolysaccharide-assembly AFA_RS12845 PF06144 DNA polymerase III, delta subunit AFA_RS12850 PF00171 Aldehyde dehydrogenase family AFA_RS12855 PF03653 AFA_RS12855 AFA_RS12860 PF01170 Putative RNA methylase family UPF0020 AFA_RS12860 PF02926 THUMP domain AFA_RS12865 PF06271 AFA_RS12865 AFA_RS12870 PF01430 Hsp33 protein AFA_RS12880 PF04977 Septum formation initiator AFA_RS12885 PF00113 Enolase, C-terminal TIM barrel domain AFA_RS12885 PF03952 Enolase, N-terminal domain AFA_RS12890 PF12802 MarR family AFA_RS12895 PF07690 Major Facilitator Superfamily AFA_RS12900 PF00106 short chain dehydrogenase AFA_RS12905 PF07045 Protein of unknown function (DUF1330) AFA_RS12910 PF00793 DAHP synthetase I family AFA_RS12915 PF00117 Glutamine amidotransferase class-I AFA_RS12915 PF06418 CTP synthase N-terminus AFA_RS12920 PF00557 Metallopeptidase family M24 AFA_RS12920 PF01321 Creatinase/Prolidase N-terminal domain AFA_RS12920 PF16188 AFA_RS12920 AFA_RS12920 PF16189 AFA_RS12920 AFA_RS12925 PF01144 Coenzyme A transferase AFA_RS12930 PF01144 Coenzyme A transferase AFA_RS12935 PF13279 Thioesterase-like superfamily AFA_RS12940 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase AFA_RS12940 PF13450 NAD(P)-binding Rossmann-like domain AFA_RS12945 PF00892 EamA-like transporter family AFA_RS12950 PF00501 AMP-binding enzyme AFA_RS12950 PF13193 AMP-binding enzyme C-terminal domain AFA_RS12950 PF16177 AFA_RS12950 AFA_RS12955 PF11700 AFA_RS12955 AFA_RS12960 PF00877 NlpC/P60 family AFA_RS12965 PF10087 AFA_RS12965 AFA_RS12970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS12970 PF03466 LysR substrate binding domain AFA_RS12975 PF00171 Aldehyde dehydrogenase family AFA_RS12980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS12980 PF03466 LysR substrate binding domain AFA_RS12985 PF00593 TonB dependent receptor AFA_RS12985 PF07715 TonB-dependent Receptor Plug Domain AFA_RS12990 PF01497 Periplasmic binding protein AFA_RS12995 PF01032 FecCD transport family AFA_RS13000 PF00005 ABC transporter AFA_RS13005 PF00296 Luciferase-like monooxygenase AFA_RS13010 PF00440 Bacterial regulatory proteins, tetR family AFA_RS13015 PF03739 AFA_RS13015 AFA_RS13020 PF00883 Cytosol aminopeptidase family, catalytic domain AFA_RS13020 PF02789 Cytosol aminopeptidase family, N-terminal domain AFA_RS13025 PF04364 DNA polymerase III chi subunit, HolC AFA_RS13030 PF01027 Inhibitor of apoptosis-promoting Bax1 AFA_RS13035 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_RS13040 PF00892 EamA-like transporter family AFA_RS13045 PF13470 AFA_RS13045 AFA_RS13050 PF02565 Recombination protein O C terminal AFA_RS13050 PF11967 Recombination protein O N terminal AFA_RS13055 PF01926 50S ribosome-binding GTPase AFA_RS13055 PF07650 KH domain AFA_RS13060 PF00035 Double-stranded RNA binding motif AFA_RS13060 PF14622 Ribonuclease-III-like AFA_RS13065 PF00717 Peptidase S24-like AFA_RS13065 PF10502 Signal peptidase, peptidase S26 AFA_RS13070 PF00009 Elongation factor Tu GTP binding domain AFA_RS13070 PF00679 Elongation factor G C-terminus AFA_RS13070 PF03144 Elongation factor Tu domain 2 AFA_RS13070 PF06421 GTP-binding protein LepA C-terminus AFA_RS13075 PF13180 PDZ domain AFA_RS13075 PF13365 Trypsin-like peptidase domain AFA_RS13080 PF03888 MucB/RseB family AFA_RS13080 PF17188 AFA_RS13080 AFA_RS13085 PF03872 Anti sigma-E protein RseA, N-terminal domain AFA_RS13090 PF04542 Sigma-70 region 2 AFA_RS13090 PF08281 Sigma-70, region 4 AFA_RS13100 PF00109 Beta-ketoacyl synthase, N-terminal domain AFA_RS13100 PF02801 Beta-ketoacyl synthase, C-terminal domain AFA_RS13105 PF00550 Phosphopantetheine attachment site AFA_RS13110 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS13115 PF00698 Acyl transferase domain AFA_RS13120 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFA_RS13120 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFA_RS13125 PF02504 Fatty acid synthesis protein AFA_RS13130 PF01783 Ribosomal L32p protein family AFA_RS13135 PF02620 AFA_RS13135 AFA_RS13140 PF02545 Maf-like protein AFA_RS13150 PF01471 Putative peptidoglycan binding domain AFA_RS13150 PF01510 N-acetylmuramoyl-L-alanine amidase AFA_RS13155 PF01794 AFA_RS13155 AFA_RS13160 PF00174 Oxidoreductase molybdopterin binding domain AFA_RS13165 PF13419 Haloacid dehalogenase-like hydrolase AFA_RS13170 PF00849 RNA pseudouridylate synthase AFA_RS13170 PF01479 S4 domain AFA_RS13175 PF00575 S1 RNA binding domain AFA_RS13175 PF10150 Ribonuclease E/G family AFA_RS13180 PF01039 Carboxyl transferase domain AFA_RS13185 PF00290 Tryptophan synthase alpha chain AFA_RS13190 PF00291 Pyridoxal-phosphate dependent enzyme AFA_RS13195 PF02824 TGS domain AFA_RS13195 PF04607 Region found in RelA / SpoT proteins AFA_RS13195 PF13291 ACT domain AFA_RS13195 PF13328 HD domain AFA_RS13200 PF03358 NADPH-dependent FMN reductase AFA_RS13205 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AFA_RS13210 PF00037 4Fe-4S binding domain AFA_RS13210 PF11953 Domain of unknown function (DUF3470) AFA_RS13215 PF06850 AFA_RS13215 AFA_RS13220 PF04060 Putative Fe-S cluster AFA_RS13220 PF14697 4Fe-4S dicluster domain AFA_RS13225 PF00633 Helix-hairpin-helix motif AFA_RS13225 PF00730 HhH-GPD superfamily base excision DNA repair protein AFA_RS13225 PF10576 Iron-sulfur binding domain of endonuclease III AFA_RS13230 PF00005 ABC transporter AFA_RS13235 PF03922 OmpW family AFA_RS13240 PF00005 ABC transporter AFA_RS13245 PF00005 ABC transporter AFA_RS13245 PF02653 AFA_RS13245 AFA_RS13245 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_RS13250 PF02653 AFA_RS13250 AFA_RS13255 PF13458 Periplasmic binding protein AFA_RS13260 PF01641 SelR domain AFA_RS13265 PF04279 AFA_RS13265 AFA_RS13270 PF01722 BolA-like protein AFA_RS13275 PF00639 PPIC-type PPIASE domain AFA_RS13280 PF00533 BRCA1 C Terminus (BRCT) domain AFA_RS13280 PF01653 NAD-dependent DNA ligase adenylation domain AFA_RS13280 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFA_RS13280 PF03120 NAD-dependent DNA ligase OB-fold domain AFA_RS13280 PF12826 Helix-hairpin-helix motif AFA_RS13280 PF14520 Helix-hairpin-helix domain AFA_RS13285 PF04354 ZipA, C-terminal FtsZ-binding domain AFA_RS13290 PF02463 RecF/RecN/SMC N terminal domain AFA_RS13290 PF06470 SMC proteins Flexible Hinge Domain AFA_RS13295 PF07690 Major Facilitator Superfamily AFA_RS13300 PF03167 Uracil DNA glycosylase superfamily AFA_RS13305 PF00583 Acetyltransferase (GNAT) family AFA_RS13305 PF00814 Glycoprotease family AFA_RS13310 PF00072 Response regulator receiver domain AFA_RS13310 PF00486 Transcriptional regulatory protein, C terminal AFA_RS13315 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS13315 PF00672 HAMP domain AFA_RS13315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS13315 PF16524 AFA_RS13315 AFA_RS13320 PF02542 YgbB family AFA_RS13325 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFA_RS13330 PF00270 DEAD/DEAH box helicase AFA_RS13330 PF00271 Helicase conserved C-terminal domain AFA_RS13330 PF02559 CarD-like/TRCF domain AFA_RS13330 PF03461 TRCF domain AFA_RS13340 PF12710 haloacid dehalogenase-like hydrolase AFA_RS13340 PF13284 AFA_RS13340 AFA_RS13345 PF03060 Nitronate monooxygenase AFA_RS13350 PF10993 AFA_RS13350 AFA_RS13355 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFA_RS13360 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFA_RS13360 PF01059 AFA_RS13360 AFA_RS13365 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFA_RS13365 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFA_RS13370 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFA_RS13375 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFA_RS13380 PF12838 4Fe-4S dicluster domain AFA_RS13385 PF00146 NADH dehydrogenase AFA_RS13390 PF00384 Molybdopterin oxidoreductase AFA_RS13390 PF01568 Molydopterin dinucleotide binding domain AFA_RS13390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFA_RS13390 PF13510 2Fe-2S iron-sulfur cluster binding domain AFA_RS13395 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFA_RS13395 PF10531 SLBB domain AFA_RS13395 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFA_RS13400 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AFA_RS13405 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFA_RS13410 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFA_RS13415 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFA_RS13420 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFA_RS13425 PF13609 Gram-negative porin AFA_RS13435 PF03840 Preprotein translocase SecG subunit AFA_RS13440 PF00121 Triosephosphate isomerase AFA_RS13445 PF00107 Zinc-binding dehydrogenase AFA_RS13445 PF08240 Alcohol dehydrogenase GroES-like domain AFA_RS13465 PF00013 KH domain AFA_RS13465 PF00575 S1 RNA binding domain AFA_RS13465 PF01138 3' exoribonuclease family, domain 1 AFA_RS13465 PF03725 3' exoribonuclease family, domain 2 AFA_RS13465 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFA_RS13470 PF00312 Ribosomal protein S15 AFA_RS13475 PF01066 CDP-alcohol phosphatidyltransferase AFA_RS13480 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFA_RS13480 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AFA_RS13485 PF10369 Small subunit of acetolactate synthase AFA_RS13485 PF13710 ACT domain AFA_RS13490 PF00205 Thiamine pyrophosphate enzyme, central domain AFA_RS13490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFA_RS13490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFA_RS13495 PF12805 AFA_RS13495 AFA_RS13495 PF13515 AFA_RS13495 AFA_RS13500 PF03883 AFA_RS13500 AFA_RS13505 PF00106 short chain dehydrogenase AFA_RS13515 PF00144 Beta-lactamase AFA_RS13515 PF11954 AFA_RS13515 AFA_RS13530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFA_RS13530 PF02403 Seryl-tRNA synthetase N-terminal domain AFA_RS13535 PF00004 ATPase family associated with various cellular activities (AAA) AFA_RS13535 PF12002 MgsA AAA+ ATPase C terminal AFA_RS13535 PF16193 AFA_RS13535 AFA_RS13540 PF03548 Outer membrane lipoprotein carrier protein LolA AFA_RS13545 PF01580 FtsK/SpoIIIE family AFA_RS13545 PF09397 Ftsk gamma domain AFA_RS13545 PF13491 AFA_RS13545 AFA_RS13550 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS13555 PF01713 Smr domain AFA_RS13560 PF14559 Tetratricopeptide repeat AFA_RS13570 PF07690 Major Facilitator Superfamily AFA_RS13575 PF01613 Flavin reductase like domain AFA_RS13580 PF07876 Stress responsive A/B Barrel Domain AFA_RS13585 PF07848 PaaX-like protein AFA_RS13585 PF08223 PaaX-like protein C-terminal domain AFA_RS13590 PF00135 Carboxylesterase family AFA_RS13595 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS13600 PF00180 Isocitrate/isopropylmalate dehydrogenase AFA_RS13605 PF08897 AFA_RS13605 AFA_RS13610 PF00034 Cytochrome c AFA_RS13620 PF00004 ATPase family associated with various cellular activities (AAA) AFA_RS13625 PF13302 Acetyltransferase (GNAT) domain AFA_RS13630 PF05762 VWA domain containing CoxE-like protein AFA_RS13635 PF11180 AFA_RS13635 AFA_RS13640 PF00158 Sigma-54 interaction domain AFA_RS13640 PF02954 Bacterial regulatory protein, Fis family AFA_RS13645 PF13400 AFA_RS13645 AFA_RS13650 PF12266 AFA_RS13650 AFA_RS13655 PF14559 Tetratricopeptide repeat AFA_RS13660 PF00482 Type II secretion system (T2SS), protein F AFA_RS13665 PF00482 Type II secretion system (T2SS), protein F AFA_RS13670 PF00437 Type II/IV secretion system protein AFA_RS13680 PF00263 AFA_RS13680 AFA_RS13680 PF13629 AFA_RS13680 AFA_RS13685 PF08666 SAF domain AFA_RS13685 PF16976 AFA_RS13685 AFA_RS13690 PF07811 AFA_RS13690 AFA_RS13695 PF07811 AFA_RS13695 AFA_RS13700 PF01478 Type IV leader peptidase family AFA_RS13705 PF04964 AFA_RS13705 AFA_RS13710 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AFA_RS13710 PF08479 POTRA domain, ShlB-type AFA_RS13715 PF15984 AFA_RS13715 AFA_RS13720 PF01047 MarR family AFA_RS13725 PF15984 AFA_RS13725 AFA_RS13735 PF12802 MarR family AFA_RS13740 PF00675 Insulinase (Peptidase family M16) AFA_RS13740 PF05193 Peptidase M16 inactive domain AFA_RS13745 PF00226 DnaJ domain AFA_RS13745 PF00684 DnaJ central domain AFA_RS13745 PF01556 DnaJ C terminal domain AFA_RS13750 PF00012 Hsp70 protein AFA_RS13755 PF01025 GrpE AFA_RS13760 PF00762 Ferrochelatase AFA_RS13765 PF01628 HrcA protein C terminal domain AFA_RS13765 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AFA_RS13770 PF01513 ATP-NAD kinase AFA_RS13775 PF02463 RecF/RecN/SMC N terminal domain AFA_RS13780 PF01475 Ferric uptake regulator family AFA_RS13785 PF04355 SmpA / OmlA family AFA_RS13790 PF01113 Dihydrodipicolinate reductase, N-terminus AFA_RS13790 PF05173 Dihydrodipicolinate reductase, C-terminus AFA_RS13795 PF00392 Bacterial regulatory proteins, gntR family AFA_RS13795 PF07729 FCD domain AFA_RS13800 PF01565 FAD binding domain AFA_RS13800 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFA_RS13820 PF00563 EAL domain AFA_RS13820 PF00990 GGDEF domain AFA_RS13820 PF01590 GAF domain AFA_RS13820 PF13426 PAS domain AFA_RS13825 PF05163 DinB family AFA_RS13830 PF00593 TonB dependent receptor AFA_RS13830 PF07715 TonB-dependent Receptor Plug Domain AFA_RS13835 PF07690 Major Facilitator Superfamily AFA_RS13840 PF12833 Helix-turn-helix domain AFA_RS13850 PF00756 Putative esterase AFA_RS13855 PF00171 Aldehyde dehydrogenase family AFA_RS13860 PF00171 Aldehyde dehydrogenase family AFA_RS13860 PF01619 Proline dehydrogenase AFA_RS13860 PF14850 DNA-binding domain of Proline dehydrogenase AFA_RS13865 PF01037 AsnC family AFA_RS13865 PF13412 Winged helix-turn-helix DNA-binding AFA_RS13870 PF01381 Helix-turn-helix AFA_RS13870 PF07883 Cupin domain AFA_RS13875 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFA_RS13880 PF00083 Sugar (and other) transporter AFA_RS13880 PF07690 Major Facilitator Superfamily AFA_RS13885 PF00270 DEAD/DEAH box helicase AFA_RS13885 PF00271 Helicase conserved C-terminal domain AFA_RS13885 PF03880 DbpA RNA binding domain AFA_RS13890 PF05973 AFA_RS13890 AFA_RS13895 PF01381 Helix-turn-helix AFA_RS13900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS13900 PF03466 LysR substrate binding domain AFA_RS13905 PF00355 Rieske [2Fe-2S] domain AFA_RS13905 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_RS13910 PF00866 Ring hydroxylating beta subunit AFA_RS13915 PF00355 Rieske [2Fe-2S] domain AFA_RS13920 PF00106 short chain dehydrogenase AFA_RS13925 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS13925 PF14759 Reductase C-terminal AFA_RS13930 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFA_RS13935 PF12697 Alpha/beta hydrolase family AFA_RS13940 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFA_RS13945 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFA_RS13945 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AFA_RS13950 PF00682 HMGL-like AFA_RS13950 PF07836 DmpG-like communication domain AFA_RS13955 PF07690 Major Facilitator Superfamily AFA_RS13970 PF01425 Amidase AFA_RS13975 PF00155 Aminotransferase class I and II AFA_RS13975 PF00392 Bacterial regulatory proteins, gntR family AFA_RS13980 PF07690 Major Facilitator Superfamily AFA_RS13990 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AFA_RS13995 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS14000 PF11339 AFA_RS14000 AFA_RS14005 PF00108 Thiolase, N-terminal domain AFA_RS14005 PF02803 Thiolase, C-terminal domain AFA_RS14010 PF00106 short chain dehydrogenase AFA_RS14015 PF09361 AFA_RS14015 AFA_RS14020 PF12698 ABC-2 family transporter protein AFA_RS14025 PF00005 ABC transporter AFA_RS14025 PF12698 ABC-2 family transporter protein AFA_RS14030 PF16576 AFA_RS14030 AFA_RS14035 PF02321 Outer membrane efflux protein AFA_RS14040 PF07167 AFA_RS14040 AFA_RS14040 PF12551 AFA_RS14040 AFA_RS14045 PF00440 Bacterial regulatory proteins, tetR family AFA_RS14045 PF16859 AFA_RS14045 AFA_RS14050 PF02592 AFA_RS14050 AFA_RS14055 PF06508 Queuosine biosynthesis protein QueC AFA_RS14060 PF00464 Serine hydroxymethyltransferase AFA_RS14065 PF00266 Aminotransferase class-V AFA_RS14070 PF00155 Aminotransferase class I and II AFA_RS14070 PF00392 Bacterial regulatory proteins, gntR family AFA_RS14075 PF00464 Serine hydroxymethyltransferase AFA_RS14080 PF11583 P-aminobenzoate N-oxygenase AurF AFA_RS14085 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS14085 PF00175 Oxidoreductase NAD-binding domain AFA_RS14090 PF00117 Glutamine amidotransferase class-I AFA_RS14095 PF08543 Phosphomethylpyrimidine kinase AFA_RS14100 PF02028 BCCT family transporter AFA_RS14105 PF00376 MerR family regulatory protein AFA_RS14105 PF09278 MerR, DNA binding AFA_RS14110 PF16576 AFA_RS14110 AFA_RS14115 PF00873 AcrB/AcrD/AcrF family AFA_RS14120 PF02321 Outer membrane efflux protein AFA_RS14130 PF03861 ANTAR domain AFA_RS14135 PF13433 Periplasmic binding protein domain AFA_RS14140 PF02293 AmiS/UreI family transporter AFA_RS14145 PF00892 EamA-like transporter family AFA_RS14155 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS14160 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO AFA_RS14165 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_RS14170 PF00155 Aminotransferase class I and II AFA_RS14170 PF00392 Bacterial regulatory proteins, gntR family AFA_RS14175 PF13924 AFA_RS14175 AFA_RS14180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS14180 PF03466 LysR substrate binding domain AFA_RS14185 PF00202 Aminotransferase class-III AFA_RS14190 PF01177 Asp/Glu/Hydantoin racemase AFA_RS14195 PF13385 Concanavalin A-like lectin/glucanases superfamily AFA_RS14205 PF04185 Phosphoesterase family AFA_RS14205 PF05506 AFA_RS14205 AFA_RS14220 PF00691 OmpA family AFA_RS14220 PF04355 SmpA / OmlA family AFA_RS14225 PF03895 YadA-like C-terminal region AFA_RS14225 PF05658 Head domain of trimeric autotransporter adhesin AFA_RS14225 PF05662 Coiled stalk of trimeric autotransporter adhesin AFA_RS14225 PF13018 AFA_RS14225 AFA_RS14230 PF00563 EAL domain AFA_RS14235 PF00239 Resolvase, N terminal domain AFA_RS14240 PF00482 Type II secretion system (T2SS), protein F AFA_RS14245 PF00437 Type II/IV secretion system protein AFA_RS14250 PF00263 AFA_RS14250 AFA_RS14250 PF03958 Bacterial type II/III secretion system short domain AFA_RS14255 PF01203 AFA_RS14255 AFA_RS14260 PF04612 Type II secretion system (T2SS), protein M AFA_RS14265 PF12693 GspL periplasmic domain AFA_RS14270 PF03934 Type II secretion system (T2SS), protein K AFA_RS14275 PF07963 Prokaryotic N-terminal methylation motif AFA_RS14280 PF02501 Type II secretion system (T2SS), protein I AFA_RS14280 PF07963 Prokaryotic N-terminal methylation motif AFA_RS14285 PF07963 Prokaryotic N-terminal methylation motif AFA_RS14290 PF07963 Prokaryotic N-terminal methylation motif AFA_RS14290 PF08334 Type II secretion system (T2SS), protein G AFA_RS14300 PF00571 CBS domain AFA_RS14300 PF04982 AFA_RS14300 AFA_RS14305 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_RS14305 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal AFA_RS14310 PF01925 AFA_RS14310 AFA_RS14315 PF00206 Lyase AFA_RS14315 PF10415 Fumarase C C-terminus AFA_RS14320 PF01047 MarR family AFA_RS14325 PF11161 AFA_RS14325 AFA_RS14330 PF00293 NUDIX domain AFA_RS14330 PF14803 Nudix N-terminal AFA_RS14335 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AFA_RS14340 PF04376 AFA_RS14340 AFA_RS14340 PF04377 AFA_RS14340 AFA_RS14345 PF01180 Dihydroorotate dehydrogenase AFA_RS14350 PF09361 AFA_RS14350 AFA_RS14355 PF01614 Bacterial transcriptional regulator AFA_RS14355 PF09339 IclR helix-turn-helix domain AFA_RS14360 PF00994 Probable molybdopterin binding domain AFA_RS14365 PF07264 Etoposide-induced protein 2 AFA_RS14370 PF00085 Thioredoxin AFA_RS14375 PF00270 DEAD/DEAH box helicase AFA_RS14375 PF00271 Helicase conserved C-terminal domain AFA_RS14380 PF05437 AFA_RS14380 AFA_RS14385 PF03591 AFA_RS14385 AFA_RS14390 PF10276 Zinc-finger domain AFA_RS14395 PF00561 alpha/beta hydrolase fold AFA_RS14400 PF01435 Peptidase family M48 AFA_RS14400 PF14559 Tetratricopeptide repeat AFA_RS14405 PF09678 AFA_RS14405 AFA_RS14420 PF01494 FAD binding domain AFA_RS14425 PF01207 Dihydrouridine synthase (Dus) AFA_RS14430 PF02954 Bacterial regulatory protein, Fis family AFA_RS14435 PF01808 AICARFT/IMPCHase bienzyme AFA_RS14435 PF02142 MGS-like domain AFA_RS14440 PF02075 Crossover junction endodeoxyribonuclease RuvC AFA_RS14445 PF01330 RuvA N terminal domain AFA_RS14445 PF07499 RuvA, C-terminal domain AFA_RS14445 PF14520 Helix-hairpin-helix domain AFA_RS14450 PF00291 Pyridoxal-phosphate dependent enzyme AFA_RS14455 PF05491 Holliday junction DNA helicase ruvB C-terminus AFA_RS14455 PF05496 Holliday junction DNA helicase ruvB N-terminus AFA_RS14465 PF01979 Amidohydrolase family AFA_RS14470 PF02201 SWIB/MDM2 domain AFA_RS14475 PF00875 DNA photolyase AFA_RS14475 PF03441 FAD binding domain of DNA photolyase AFA_RS14520 PF00581 Rhodanese-like domain AFA_RS14525 PF04143 AFA_RS14525 AFA_RS14535 PF01625 Peptide methionine sulfoxide reductase AFA_RS14540 PF01790 AFA_RS14540 AFA_RS14550 PF05164 Cell division protein ZapA AFA_RS14560 PF07331 AFA_RS14560 AFA_RS14565 PF01970 AFA_RS14565 AFA_RS14570 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS14575 PF00005 ABC transporter AFA_RS14575 PF08402 TOBE domain AFA_RS14580 PF13343 Bacterial extracellular solute-binding protein AFA_RS14585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_RS14585 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFA_RS14590 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS14590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS14590 PF08521 AFA_RS14590 AFA_RS14595 PF00072 Response regulator receiver domain AFA_RS14595 PF00486 Transcriptional regulatory protein, C terminal AFA_RS14600 PF00293 NUDIX domain AFA_RS14605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFA_RS14605 PF03129 Anticodon binding domain AFA_RS14605 PF04073 Aminoacyl-tRNA editing domain AFA_RS14610 PF03061 Thioesterase superfamily AFA_RS14615 PF01618 AFA_RS14615 AFA_RS14620 PF02472 Biopolymer transport protein ExbD/TolR AFA_RS14625 PF13103 TonB C terminal AFA_RS14630 PF04052 TolB amino-terminal domain AFA_RS14630 PF07676 WD40-like Beta Propeller Repeat AFA_RS14635 PF00691 OmpA family AFA_RS14640 PF13525 Outer membrane lipoprotein AFA_RS14645 PF12697 Alpha/beta hydrolase family AFA_RS14650 PF04314 Protein of unknown function (DUF461) AFA_RS14655 PF03061 Thioesterase superfamily AFA_RS14660 PF01554 MatE AFA_RS14665 PF02608 Basic membrane protein AFA_RS14670 PF02653 AFA_RS14670 AFA_RS14675 PF02653 AFA_RS14675 AFA_RS14680 PF00005 ABC transporter AFA_RS14685 PF01679 AFA_RS14685 AFA_RS14690 PF16654 AFA_RS14690 AFA_RS14695 PF01810 AFA_RS14695 AFA_RS14700 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AFA_RS14700 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AFA_RS14705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS14705 PF03466 LysR substrate binding domain AFA_RS14715 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS14715 PF13192 Thioredoxin domain AFA_RS14720 PF00578 AhpC/TSA family AFA_RS14720 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFA_RS14725 PF00155 Aminotransferase class I and II AFA_RS14725 PF00392 Bacterial regulatory proteins, gntR family AFA_RS14730 PF00892 EamA-like transporter family AFA_RS14735 PF01507 Phosphoadenosine phosphosulfate reductase family AFA_RS14740 PF01507 Phosphoadenosine phosphosulfate reductase family AFA_RS14745 PF00009 Elongation factor Tu GTP binding domain AFA_RS14750 PF00324 Amino acid permease AFA_RS14755 PF00171 Aldehyde dehydrogenase family AFA_RS14760 PF01266 FAD dependent oxidoreductase AFA_RS14765 PF07063 Domain of unknown function (DUF1338) AFA_RS14770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS14770 PF03466 LysR substrate binding domain AFA_RS14775 PF00871 Acetokinase family AFA_RS14780 PF01515 Phosphate acetyl/butaryl transferase AFA_RS14785 PF07080 Protein of unknown function (DUF1348) AFA_RS14790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS14790 PF03466 LysR substrate binding domain AFA_RS14795 PF02678 Pirin AFA_RS14800 PF00990 GGDEF domain AFA_RS14805 PF01425 Amidase AFA_RS14815 PF00166 Chaperonin 10 Kd subunit AFA_RS14820 PF00118 TCP-1/cpn60 chaperonin family AFA_RS14825 PF01219 Prokaryotic diacylglycerol kinase AFA_RS14830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFA_RS14835 PF02515 CoA-transferase family III AFA_RS14840 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS14845 PF01614 Bacterial transcriptional regulator AFA_RS14845 PF09339 IclR helix-turn-helix domain AFA_RS14850 PF02464 Competence-damaged protein AFA_RS14855 PF04608 Phosphatidylglycerophosphatase A AFA_RS14860 PF00586 AIR synthase related protein, N-terminal domain AFA_RS14860 PF02769 AIR synthase related protein, C-terminal domain AFA_RS14865 PF01029 NusB family AFA_RS14870 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFA_RS14875 PF00925 GTP cyclohydrolase II AFA_RS14875 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFA_RS14880 PF01614 Bacterial transcriptional regulator AFA_RS14880 PF09339 IclR helix-turn-helix domain AFA_RS14885 PF01928 CYTH domain AFA_RS14885 PF05235 CHAD domain AFA_RS14890 PF00448 SRP54-type protein, GTPase domain AFA_RS14890 PF02881 SRP54-type protein, helical bundle domain AFA_RS14895 PF03602 Conserved hypothetical protein 95 AFA_RS14900 PF01467 Cytidylyltransferase AFA_RS14905 PF00037 4Fe-4S binding domain AFA_RS14910 PF03476 MOSC N-terminal beta barrel domain AFA_RS14915 PF05170 AFA_RS14915 AFA_RS14920 PF01053 Cys/Met metabolism PLP-dependent enzyme AFA_RS14925 PF06078 Bacterial protein of unknown function (DUF937) AFA_RS14930 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFA_RS14935 PF07238 PilZ domain AFA_RS14935 PF07317 Flagellar regulator YcgR AFA_RS14940 PF12804 MobA-like NTP transferase domain AFA_RS14945 PF03797 Autotransporter beta-domain AFA_RS14950 PF00857 Isochorismatase family AFA_RS14960 PF00561 alpha/beta hydrolase fold AFA_RS14965 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFA_RS14970 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS14970 PF01799 [2Fe-2S] binding domain AFA_RS14975 PF00034 Cytochrome c AFA_RS14975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS14980 PF06041 Bacterial protein of unknown function (DUF924) AFA_RS14985 PF00005 ABC transporter AFA_RS14990 PF00005 ABC transporter AFA_RS14995 PF02653 AFA_RS14995 AFA_RS15000 PF13458 Periplasmic binding protein AFA_RS15005 PF01804 Penicillin amidase AFA_RS15010 PF00990 GGDEF domain AFA_RS15015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS15015 PF03466 LysR substrate binding domain AFA_RS15020 PF00884 Sulfatase AFA_RS15025 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS15030 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS15035 PF12706 Beta-lactamase superfamily domain AFA_RS15040 PF00392 Bacterial regulatory proteins, gntR family AFA_RS15040 PF07702 UTRA domain AFA_RS15045 PF03704 Bacterial transcriptional activator domain AFA_RS15045 PF13191 AAA ATPase domain AFA_RS15050 PF13091 PLD-like domain AFA_RS15055 PF00892 EamA-like transporter family AFA_RS15060 PF01256 Carbohydrate kinase AFA_RS15060 PF03853 YjeF-related protein N-terminus AFA_RS15065 PF02625 XdhC and CoxI family AFA_RS15065 PF13478 XdhC Rossmann domain AFA_RS15070 PF06808 AFA_RS15070 AFA_RS15075 PF04290 AFA_RS15075 AFA_RS15080 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS15080 PF01799 [2Fe-2S] binding domain AFA_RS15080 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) AFA_RS15085 PF00941 FAD binding domain in molybdopterin dehydrogenase AFA_RS15090 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_RS15090 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFA_RS15095 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS15100 PF00355 Rieske [2Fe-2S] domain AFA_RS15105 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFA_RS15105 PF14759 Reductase C-terminal AFA_RS15110 PF00355 Rieske [2Fe-2S] domain AFA_RS15110 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFA_RS15115 PF00866 Ring hydroxylating beta subunit AFA_RS15120 PF00857 Isochorismatase family AFA_RS15130 PF00561 alpha/beta hydrolase fold AFA_RS15135 PF04909 Amidohydrolase AFA_RS15140 PF01047 MarR family AFA_RS15145 PF00005 ABC transporter AFA_RS15150 PF01032 FecCD transport family AFA_RS15155 PF01497 Periplasmic binding protein AFA_RS15160 PF00593 TonB dependent receptor AFA_RS15160 PF07715 TonB-dependent Receptor Plug Domain AFA_RS15165 PF02667 AFA_RS15165 AFA_RS15180 PF00929 Exonuclease AFA_RS15185 PF00873 AcrB/AcrD/AcrF family AFA_RS15190 PF16576 AFA_RS15190 AFA_RS15195 PF00075 RNase H AFA_RS15200 PF08241 Methyltransferase domain AFA_RS15205 PF00753 Metallo-beta-lactamase superfamily AFA_RS15205 PF16123 AFA_RS15205 AFA_RS15210 PF01464 Transglycosylase SLT domain AFA_RS15210 PF01476 LysM domain AFA_RS15215 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS15220 PF00072 Response regulator receiver domain AFA_RS15220 PF00158 Sigma-54 interaction domain AFA_RS15220 PF02954 Bacterial regulatory protein, Fis family AFA_RS15225 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS15225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS15225 PF02743 Cache domain AFA_RS15230 PF00375 Sodium:dicarboxylate symporter family AFA_RS15235 PF13410 Glutathione S-transferase, C-terminal domain AFA_RS15235 PF13417 Glutathione S-transferase, N-terminal domain AFA_RS15240 PF00581 Rhodanese-like domain AFA_RS15245 PF04307 AFA_RS15245 AFA_RS15250 PF13767 AFA_RS15250 AFA_RS15255 PF04214 AFA_RS15255 AFA_RS15260 PF04073 Aminoacyl-tRNA editing domain AFA_RS15265 PF05995 Cysteine dioxygenase type I AFA_RS15270 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS15275 PF13380 CoA binding domain AFA_RS15275 PF13549 ATP-grasp domain AFA_RS15275 PF13607 Succinyl-CoA ligase like flavodoxin domain AFA_RS15280 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS15285 PF00107 Zinc-binding dehydrogenase AFA_RS15290 PF02515 CoA-transferase family III AFA_RS15295 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS15300 PF01614 Bacterial transcriptional regulator AFA_RS15300 PF09339 IclR helix-turn-helix domain AFA_RS15305 PF10649 AFA_RS15305 AFA_RS15310 PF08240 Alcohol dehydrogenase GroES-like domain AFA_RS15310 PF13602 Zinc-binding dehydrogenase AFA_RS15315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFA_RS15320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS15320 PF03466 LysR substrate binding domain AFA_RS15335 PF04185 Phosphoesterase family AFA_RS15335 PF05506 AFA_RS15335 AFA_RS15340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS15340 PF03466 LysR substrate binding domain AFA_RS15345 PF13419 Haloacid dehalogenase-like hydrolase AFA_RS15350 PF00465 Iron-containing alcohol dehydrogenase AFA_RS15355 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS15360 PF00005 ABC transporter AFA_RS15365 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AFA_RS15370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS15370 PF03466 LysR substrate binding domain AFA_RS15375 PF00501 AMP-binding enzyme AFA_RS15375 PF13193 AMP-binding enzyme C-terminal domain AFA_RS15390 PF01810 AFA_RS15390 AFA_RS15395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS15395 PF03466 LysR substrate binding domain AFA_RS15400 PF12840 Helix-turn-helix domain AFA_RS15405 PF02040 AFA_RS15405 AFA_RS15410 PF03960 ArsC family AFA_RS15415 PF03358 NADPH-dependent FMN reductase AFA_RS15420 PF00072 Response regulator receiver domain AFA_RS15420 PF00486 Transcriptional regulatory protein, C terminal AFA_RS15425 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS15425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS15425 PF08521 AFA_RS15425 AFA_RS15430 PF04076 Bacterial OB fold (BOF) protein AFA_RS15440 PF01053 Cys/Met metabolism PLP-dependent enzyme AFA_RS15445 PF07690 Major Facilitator Superfamily AFA_RS15450 PF14518 Iron-containing redox enzyme AFA_RS15455 PF00583 Acetyltransferase (GNAT) family AFA_RS15460 PF01965 DJ-1/PfpI family AFA_RS15460 PF12833 Helix-turn-helix domain AFA_RS15470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFA_RS15470 PF01872 RibD C-terminal domain AFA_RS15475 PF03477 ATP cone domain AFA_RS15480 PF00464 Serine hydroxymethyltransferase AFA_RS15485 PF01161 Phosphatidylethanolamine-binding protein AFA_RS15490 PF00579 tRNA synthetases class I (W and Y) AFA_RS15490 PF01479 S4 domain AFA_RS15495 PF01551 Peptidase family M23 AFA_RS15500 PF03702 Uncharacterised protein family (UPF0075) AFA_RS15505 PF10053 AFA_RS15505 AFA_RS15510 PF13538 UvrD-like helicase C-terminal domain AFA_RS15515 PF01521 Iron-sulphur cluster biosynthesis AFA_RS15525 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFA_RS15525 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFA_RS15530 PF00380 Ribosomal protein S9/S16 AFA_RS15535 PF00572 Ribosomal protein L13 AFA_RS15540 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS15545 PF01523 Putative modulator of DNA gyrase AFA_RS15550 PF04751 Protein of unknown function (DUF615) AFA_RS15555 PF02230 Phospholipase/Carboxylesterase AFA_RS15560 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFA_RS15560 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFA_RS15565 PF13302 Acetyltransferase (GNAT) domain AFA_RS15565 PF13549 ATP-grasp domain AFA_RS15565 PF13607 Succinyl-CoA ligase like flavodoxin domain AFA_RS15570 PF00122 E1-E2 ATPase AFA_RS15570 PF00689 Cation transporting ATPase, C-terminus AFA_RS15570 PF00690 Cation transporter/ATPase, N-terminus AFA_RS15570 PF00702 haloacid dehalogenase-like hydrolase AFA_RS15575 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS15575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS15580 PF00072 Response regulator receiver domain AFA_RS15580 PF00196 Bacterial regulatory proteins, luxR family AFA_RS15585 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFA_RS15590 PF07152 YaeQ protein AFA_RS15600 PF01037 AsnC family AFA_RS15600 PF13412 Winged helix-turn-helix DNA-binding AFA_RS15605 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFA_RS15615 PF02325 AFA_RS15615 AFA_RS15620 PF00730 HhH-GPD superfamily base excision DNA repair protein AFA_RS15620 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFA_RS15620 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFA_RS15625 PF05433 AFA_RS15625 AFA_RS15630 PF00294 pfkB family carbohydrate kinase AFA_RS15635 PF11906 AFA_RS15635 AFA_RS15640 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AFA_RS15645 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFA_RS15645 PF02785 Biotin carboxylase C-terminal domain AFA_RS15645 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFA_RS15650 PF00364 Biotin-requiring enzyme AFA_RS15655 PF01220 Dehydroquinase class II AFA_RS15660 PF08534 Redoxin AFA_RS15665 PF01225 Mur ligase family, catalytic domain AFA_RS15665 PF02875 Mur ligase family, glutamate ligase domain AFA_RS15665 PF08245 Mur ligase middle domain AFA_RS15670 PF05728 Uncharacterised protein family (UPF0227) AFA_RS15675 PF00773 RNB domain AFA_RS15680 PF13103 TonB C terminal AFA_RS15685 PF01488 Shikimate / quinate 5-dehydrogenase AFA_RS15685 PF08501 Shikimate dehydrogenase substrate binding domain AFA_RS15690 PF00912 Transglycosylase AFA_RS15695 PF03739 AFA_RS15695 AFA_RS15700 PF00149 Calcineurin-like phosphoesterase AFA_RS15705 PF01553 Acyltransferase AFA_RS15710 PF03652 Uncharacterised protein family (UPF0081) AFA_RS15715 PF02622 Uncharacterized ACR, COG1678 AFA_RS15720 PF00301 Rubredoxin AFA_RS15725 PF08543 Phosphomethylpyrimidine kinase AFA_RS15730 PF02581 Thiamine monophosphate synthase/TENI AFA_RS15735 PF00202 Aminotransferase class-III AFA_RS15740 PF00501 AMP-binding enzyme AFA_RS15740 PF13193 AMP-binding enzyme C-terminal domain AFA_RS15745 PF01047 MarR family AFA_RS15750 PF01960 ArgJ family AFA_RS15755 PF07043 AFA_RS15755 AFA_RS15760 PF05532 CsbD-like AFA_RS15765 PF00829 Ribosomal prokaryotic L21 protein AFA_RS15770 PF01016 Ribosomal L27 protein AFA_RS15775 PF01018 GTP1/OBG AFA_RS15775 PF01926 50S ribosome-binding GTPase AFA_RS15780 PF00696 Amino acid kinase family AFA_RS15780 PF01472 PUA domain AFA_RS15785 PF01266 FAD dependent oxidoreductase AFA_RS15790 PF00486 Transcriptional regulatory protein, C terminal AFA_RS15795 PF01381 Helix-turn-helix AFA_RS15800 PF01381 Helix-turn-helix AFA_RS15805 PF01964 ThiC family AFA_RS15805 PF13667 ThiC-associated domain AFA_RS15810 PF00691 OmpA family AFA_RS15810 PF13488 AFA_RS15810 AFA_RS15815 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS15820 PF00005 ABC transporter AFA_RS15825 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS15830 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS15835 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFA_RS15840 PF00005 ABC transporter AFA_RS15845 PF02687 AFA_RS15845 AFA_RS15850 PF00730 HhH-GPD superfamily base excision DNA repair protein AFA_RS15850 PF14815 NUDIX domain AFA_RS15855 PF01098 AFA_RS15855 AFA_RS15860 PF00905 Penicillin binding protein transpeptidase domain AFA_RS15860 PF03717 Penicillin-binding Protein dimerisation domain AFA_RS15865 PF04093 AFA_RS15865 AFA_RS15870 PF04085 rod shape-determining protein MreC AFA_RS15875 PF06723 MreB/Mbl protein AFA_RS15880 PF02686 Glu-tRNAGln amidotransferase C subunit AFA_RS15885 PF01425 Amidase AFA_RS15890 PF02637 GatB domain AFA_RS15890 PF02934 GatB/GatE catalytic domain AFA_RS15895 PF00156 Phosphoribosyl transferase domain AFA_RS15900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS15900 PF03466 LysR substrate binding domain AFA_RS15905 PF07681 AFA_RS15905 AFA_RS15910 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFA_RS15915 PF03372 Endonuclease/Exonuclease/phosphatase family AFA_RS15920 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS15925 PF00394 Multicopper oxidase AFA_RS15925 PF07732 Multicopper oxidase AFA_RS15930 PF01047 MarR family AFA_RS15935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS15935 PF02770 Acyl-CoA dehydrogenase, middle domain AFA_RS15935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_RS15935 PF12806 AFA_RS15935 AFA_RS15940 PF07690 Major Facilitator Superfamily AFA_RS15945 PF13380 CoA binding domain AFA_RS15945 PF13549 ATP-grasp domain AFA_RS15945 PF13607 Succinyl-CoA ligase like flavodoxin domain AFA_RS15950 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS15955 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_RS15965 PF00158 Sigma-54 interaction domain AFA_RS15965 PF02954 Bacterial regulatory protein, Fis family AFA_RS15970 PF00027 Cyclic nucleotide-binding domain AFA_RS15970 PF13545 Crp-like helix-turn-helix domain AFA_RS15975 PF03781 Sulfatase-modifying factor enzyme 1 AFA_RS15980 PF12680 SnoaL-like domain AFA_RS15985 PF00440 Bacterial regulatory proteins, tetR family AFA_RS15990 PF01593 Flavin containing amine oxidoreductase AFA_RS15995 PF07103 AFA_RS15995 AFA_RS16000 PF02353 Mycolic acid cyclopropane synthetase AFA_RS16010 PF13347 MFS/sugar transport protein AFA_RS16015 PF12915 AFA_RS16015 AFA_RS16020 PF00106 short chain dehydrogenase AFA_RS16025 PF01370 NAD dependent epimerase/dehydratase family AFA_RS16025 PF08338 Domain of unknown function (DUF1731) AFA_RS16030 PF03616 AFA_RS16030 AFA_RS16035 PF00348 Polyprenyl synthetase AFA_RS16040 PF05673 Protein of unknown function (DUF815) AFA_RS16045 PF00293 NUDIX domain AFA_RS16045 PF02581 Thiamine monophosphate synthase/TENI AFA_RS16050 PF01564 Spermine/spermidine synthase AFA_RS16055 PF02321 Outer membrane efflux protein AFA_RS16060 PF00873 AcrB/AcrD/AcrF family AFA_RS16065 PF00873 AcrB/AcrD/AcrF family AFA_RS16070 PF13437 HlyD family secretion protein AFA_RS16070 PF13533 Biotin-lipoyl like AFA_RS16075 PF07072 Protein of unknown function (DUF1342) AFA_RS16080 PF01121 Dephospho-CoA kinase AFA_RS16090 PF00196 Bacterial regulatory proteins, luxR family AFA_RS16095 PF02569 Pantoate-beta-alanine ligase AFA_RS16100 PF02616 ScpA/B protein AFA_RS16105 PF11943 AFA_RS16105 AFA_RS16110 PF07690 Major Facilitator Superfamily AFA_RS16115 PF03483 B3/4 domain AFA_RS16120 PF00892 EamA-like transporter family AFA_RS16125 PF02311 AraC-like ligand binding domain AFA_RS16125 PF12833 Helix-turn-helix domain AFA_RS16130 PF13560 Helix-turn-helix domain AFA_RS16135 PF00809 Pterin binding enzyme AFA_RS16135 PF02310 B12 binding domain AFA_RS16135 PF02574 Homocysteine S-methyltransferase AFA_RS16135 PF02607 B12 binding domain AFA_RS16135 PF02965 Vitamin B12 dependent methionine synthase, activation domain AFA_RS16140 PF00593 TonB dependent receptor AFA_RS16140 PF07715 TonB-dependent Receptor Plug Domain AFA_RS16145 PF01497 Periplasmic binding protein AFA_RS16150 PF00593 TonB dependent receptor AFA_RS16150 PF07715 TonB-dependent Receptor Plug Domain AFA_RS16155 PF04773 FecR protein AFA_RS16155 PF16220 AFA_RS16155 AFA_RS16160 PF04542 Sigma-70 region 2 AFA_RS16160 PF08281 Sigma-70, region 4 AFA_RS16170 PF05690 Thiazole biosynthesis protein ThiG AFA_RS16175 PF08543 Phosphomethylpyrimidine kinase AFA_RS16180 PF01048 Phosphorylase superfamily AFA_RS16185 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AFA_RS16190 PF02321 Outer membrane efflux protein AFA_RS16195 PF01467 Cytidylyltransferase AFA_RS16205 PF03109 AFA_RS16205 AFA_RS16210 PF02036 SCP-2 sterol transfer family AFA_RS16215 PF04280 Tim44-like domain AFA_RS16220 PF01209 ubiE/COQ5 methyltransferase family AFA_RS16225 PF00072 Response regulator receiver domain AFA_RS16225 PF00486 Transcriptional regulatory protein, C terminal AFA_RS16230 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS16230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS16230 PF11808 AFA_RS16230 AFA_RS16240 PF02682 Allophanate hydrolase subunit 1 AFA_RS16245 PF02626 Allophanate hydrolase subunit 2 AFA_RS16250 PF00291 Pyridoxal-phosphate dependent enzyme AFA_RS16250 PF00585 C-terminal regulatory domain of Threonine dehydratase AFA_RS16255 PF09335 AFA_RS16255 AFA_RS16260 PF01565 FAD binding domain AFA_RS16260 PF02754 AFA_RS16260 AFA_RS16260 PF02913 FAD linked oxidases, C-terminal domain AFA_RS16260 PF11880 AFA_RS16260 AFA_RS16260 PF12447 AFA_RS16260 AFA_RS16260 PF13183 4Fe-4S dicluster domain AFA_RS16265 PF13883 Pyridoxamine 5'-phosphate oxidase AFA_RS16270 PF00082 Subtilase family AFA_RS16270 PF03797 Autotransporter beta-domain AFA_RS16270 PF12951 AFA_RS16270 AFA_RS16275 PF00082 Subtilase family AFA_RS16275 PF03797 Autotransporter beta-domain AFA_RS16275 PF12951 AFA_RS16275 AFA_RS16280 PF00082 Subtilase family AFA_RS16280 PF03797 Autotransporter beta-domain AFA_RS16280 PF12951 AFA_RS16280 AFA_RS16285 PF00082 Subtilase family AFA_RS16285 PF03797 Autotransporter beta-domain AFA_RS16285 PF12951 AFA_RS16285 AFA_RS16290 PF00156 Phosphoribosyl transferase domain AFA_RS16295 PF00005 ABC transporter AFA_RS16295 PF00664 ABC transporter transmembrane region AFA_RS16300 PF00005 ABC transporter AFA_RS16300 PF00664 ABC transporter transmembrane region AFA_RS16305 PF08173 AFA_RS16305 AFA_RS16310 PF02322 AFA_RS16310 AFA_RS16315 PF01654 AFA_RS16315 AFA_RS16320 PF12802 MarR family AFA_RS16325 PF00571 CBS domain AFA_RS16325 PF01380 SIS domain AFA_RS16330 PF08282 haloacid dehalogenase-like hydrolase AFA_RS16335 PF06835 Lipopolysaccharide-assembly, LptC-related AFA_RS16340 PF03968 OstA-like protein AFA_RS16345 PF00005 ABC transporter AFA_RS16345 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_RS16350 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFA_RS16355 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFA_RS16360 PF02603 HPr Serine kinase N terminus AFA_RS16360 PF07475 HPr Serine kinase C-terminal domain AFA_RS16365 PF03668 AFA_RS16365 AFA_RS16370 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AFA_RS16370 PF05036 Sporulation related domain AFA_RS16375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFA_RS16380 PF02021 Uncharacterised protein family UPF0102 AFA_RS16385 PF13580 SIS domain AFA_RS16390 PF04972 BON domain AFA_RS16395 PF08534 Redoxin AFA_RS16400 PF00696 Amino acid kinase family AFA_RS16405 PF13419 Haloacid dehalogenase-like hydrolase AFA_RS16410 PF00899 ThiF family AFA_RS16415 PF03572 Peptidase family S41 AFA_RS16415 PF13180 PDZ domain AFA_RS16420 PF01551 Peptidase family M23 AFA_RS16425 PF00300 Histidine phosphatase superfamily (branch 1) AFA_RS16430 PF00581 Rhodanese-like domain AFA_RS16435 PF00462 Glutaredoxin AFA_RS16440 PF02556 Preprotein translocase subunit SecB AFA_RS16445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFA_RS16445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFA_RS16450 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS16455 PF00588 SpoU rRNA Methylase family AFA_RS16460 PF00156 Phosphoribosyl transferase domain AFA_RS16465 PF08241 Methyltransferase domain AFA_RS16470 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFA_RS16475 PF00072 Response regulator receiver domain AFA_RS16475 PF02954 Bacterial regulatory protein, Fis family AFA_RS16480 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS16480 PF00672 HAMP domain AFA_RS16480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS16485 PF14334 AFA_RS16485 AFA_RS16490 PF01189 NOL1/NOP2/sun family AFA_RS16495 PF00919 Uncharacterized protein family UPF0004 AFA_RS16495 PF01938 TRAM domain AFA_RS16495 PF04055 Radical SAM superfamily AFA_RS16500 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_RS16505 PF16363 AFA_RS16505 AFA_RS16510 PF01177 Asp/Glu/Hydantoin racemase AFA_RS16515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS16515 PF03466 LysR substrate binding domain AFA_RS16520 PF03328 HpcH/HpaI aldolase/citrate lyase family AFA_RS16525 PF00005 ABC transporter AFA_RS16530 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS16535 PF13379 NMT1-like family AFA_RS16540 PF00535 Glycosyl transferase family 2 AFA_RS16545 PF00534 Glycosyl transferases group 1 AFA_RS16545 PF13439 Glycosyltransferase Family 4 AFA_RS16550 PF01943 AFA_RS16550 AFA_RS16555 PF02397 AFA_RS16555 AFA_RS16560 PF00534 Glycosyl transferases group 1 AFA_RS16560 PF13579 Glycosyl transferase 4-like domain AFA_RS16565 PF04932 AFA_RS16565 AFA_RS16570 PF04932 AFA_RS16570 AFA_RS16575 PF16363 AFA_RS16575 AFA_RS16580 PF00483 Nucleotidyl transferase AFA_RS16585 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFA_RS16590 PF04321 RmlD substrate binding domain AFA_RS16595 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFA_RS16600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFA_RS16600 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFA_RS16605 PF00231 ATP synthase AFA_RS16610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFA_RS16610 PF00306 ATP synthase alpha/beta chain, C terminal domain AFA_RS16610 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFA_RS16615 PF00213 ATP synthase delta (OSCP) subunit AFA_RS16620 PF00430 ATP synthase B/B' CF(0) AFA_RS16625 PF00137 ATP synthase subunit C AFA_RS16630 PF00119 ATP synthase A chain AFA_RS16635 PF03899 AFA_RS16635 AFA_RS16640 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS16645 PF05299 M61 glycyl aminopeptidase AFA_RS16645 PF13180 PDZ domain AFA_RS16650 PF02152 Dihydroneopterin aldolase AFA_RS16655 PF01171 PP-loop family AFA_RS16660 PF02441 Flavoprotein AFA_RS16665 PF00462 Glutaredoxin AFA_RS16670 PF13847 Methyltransferase domain AFA_RS16675 PF00472 RF-1 domain AFA_RS16675 PF03462 PCRF domain AFA_RS16680 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFA_RS16680 PF01488 Shikimate / quinate 5-dehydrogenase AFA_RS16680 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFA_RS16690 PF00990 GGDEF domain AFA_RS16690 PF02743 Cache domain AFA_RS16695 PF10294 Putative methyltransferase AFA_RS16700 PF13649 Methyltransferase domain AFA_RS16705 PF00593 TonB dependent receptor AFA_RS16705 PF07660 Secretin and TonB N terminus short domain AFA_RS16705 PF07715 TonB-dependent Receptor Plug Domain AFA_RS16715 PF04773 FecR protein AFA_RS16715 PF16220 AFA_RS16715 AFA_RS16715 PF16344 AFA_RS16715 AFA_RS16720 PF04542 Sigma-70 region 2 AFA_RS16720 PF08281 Sigma-70, region 4 AFA_RS16725 PF00080 Copper/zinc superoxide dismutase (SODC) AFA_RS16730 PF16242 AFA_RS16730 AFA_RS16735 PF05145 AFA_RS16735 AFA_RS16740 PF01970 AFA_RS16740 AFA_RS16745 PF07331 AFA_RS16745 AFA_RS16750 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS16755 PF00512 His Kinase A (phospho-acceptor) domain AFA_RS16755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS16755 PF08521 AFA_RS16755 AFA_RS16760 PF00072 Response regulator receiver domain AFA_RS16760 PF00486 Transcriptional regulatory protein, C terminal AFA_RS16765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS16765 PF03466 LysR substrate binding domain AFA_RS16770 PF07690 Major Facilitator Superfamily AFA_RS16775 PF00795 Carbon-nitrogen hydrolase AFA_RS16780 PF13560 Helix-turn-helix domain AFA_RS16785 PF00593 TonB dependent receptor AFA_RS16785 PF07715 TonB-dependent Receptor Plug Domain AFA_RS16795 PF00005 ABC transporter AFA_RS16800 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS16805 PF02621 Menaquinone biosynthesis AFA_RS16810 PF00027 Cyclic nucleotide-binding domain AFA_RS16810 PF13545 Crp-like helix-turn-helix domain AFA_RS16815 PF01152 Bacterial-like globin AFA_RS16815 PF09313 Domain of unknown function (DUF1971) AFA_RS16820 PF00384 Molybdopterin oxidoreductase AFA_RS16820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFA_RS16825 PF00384 Molybdopterin oxidoreductase AFA_RS16825 PF01568 Molydopterin dinucleotide binding domain AFA_RS16830 PF09163 Formate dehydrogenase N, transmembrane AFA_RS16830 PF13247 4Fe-4S dicluster domain AFA_RS16835 PF01292 Prokaryotic cytochrome b561 AFA_RS16840 PF04216 Protein involved in formate dehydrogenase formation AFA_RS16845 PF03841 L-seryl-tRNA selenium transferase AFA_RS16845 PF12390 AFA_RS16845 AFA_RS16850 PF00009 Elongation factor Tu GTP binding domain AFA_RS16850 PF03144 Elongation factor Tu domain 2 AFA_RS16850 PF09106 Elongation factor SelB, winged helix AFA_RS16850 PF09107 Elongation factor SelB, winged helix AFA_RS16860 PF01381 Helix-turn-helix AFA_RS16860 PF07883 Cupin domain AFA_RS16865 PF00596 Class II Aldolase and Adducin N-terminal domain AFA_RS16870 PF00043 Glutathione S-transferase, C-terminal domain AFA_RS16870 PF13417 Glutathione S-transferase, N-terminal domain AFA_RS16875 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS16880 PF00593 TonB dependent receptor AFA_RS16880 PF07715 TonB-dependent Receptor Plug Domain AFA_RS16890 PF00593 TonB dependent receptor AFA_RS16890 PF07715 TonB-dependent Receptor Plug Domain AFA_RS16895 PF00586 AIR synthase related protein, N-terminal domain AFA_RS16895 PF02769 AIR synthase related protein, C-terminal domain AFA_RS16905 PF12801 AFA_RS16905 AFA_RS16915 PF05048 Periplasmic copper-binding protein (NosD) AFA_RS16920 PF00005 ABC transporter AFA_RS16925 PF12679 AFA_RS16925 AFA_RS16930 PF05573 NosL AFA_RS16935 PF02424 ApbE family AFA_RS16940 PF00342 Phosphoglucose isomerase AFA_RS16950 PF01850 PIN domain AFA_RS16955 PF00884 Sulfatase AFA_RS16960 PF00106 short chain dehydrogenase AFA_RS16965 PF13641 Glycosyltransferase like family 2 AFA_RS16970 PF13524 Glycosyl transferases group 1 AFA_RS16975 PF13579 Glycosyl transferase 4-like domain AFA_RS16975 PF13692 Glycosyl transferases group 1 AFA_RS16995 PF00535 Glycosyl transferase family 2 AFA_RS16995 PF12996 AFA_RS16995 AFA_RS16995 PF13524 Glycosyl transferases group 1 AFA_RS17000 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFA_RS17000 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFA_RS17000 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFA_RS17005 PF02350 UDP-N-acetylglucosamine 2-epimerase AFA_RS17020 PF00005 ABC transporter AFA_RS17025 PF01061 AFA_RS17025 AFA_RS17030 PF02563 Polysaccharide biosynthesis/export protein AFA_RS17035 PF00155 Aminotransferase class I and II AFA_RS17040 PF00107 Zinc-binding dehydrogenase AFA_RS17040 PF00109 Beta-ketoacyl synthase, N-terminal domain AFA_RS17040 PF00550 Phosphopantetheine attachment site AFA_RS17040 PF00698 Acyl transferase domain AFA_RS17040 PF02801 Beta-ketoacyl synthase, C-terminal domain AFA_RS17040 PF08659 KR domain AFA_RS17040 PF13489 Methyltransferase domain AFA_RS17040 PF14765 Polyketide synthase dehydratase AFA_RS17040 PF16197 AFA_RS17040 AFA_RS17045 PF00860 Permease family AFA_RS17050 PF00892 EamA-like transporter family AFA_RS17055 PF00155 Aminotransferase class I and II AFA_RS17055 PF00392 Bacterial regulatory proteins, gntR family AFA_RS17060 PF00892 EamA-like transporter family AFA_RS17070 PF00108 Thiolase, N-terminal domain AFA_RS17070 PF02803 Thiolase, C-terminal domain AFA_RS17075 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS17075 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFA_RS17075 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFA_RS17080 PF02417 AFA_RS17080 AFA_RS17085 PF02417 AFA_RS17085 AFA_RS17090 PF00005 ABC transporter AFA_RS17095 PF02405 AFA_RS17095 AFA_RS17100 PF02470 AFA_RS17100 AFA_RS17105 PF04333 AFA_RS17105 AFA_RS17110 PF05494 Toluene tolerance, Ttg2 AFA_RS17115 PF00005 ABC transporter AFA_RS17120 PF01061 AFA_RS17120 AFA_RS17125 PF01722 BolA-like protein AFA_RS17130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFA_RS17135 PF01634 ATP phosphoribosyltransferase AFA_RS17140 PF00815 Histidinol dehydrogenase AFA_RS17145 PF00475 Imidazoleglycerol-phosphate dehydratase AFA_RS17150 PF00117 Glutamine amidotransferase class-I AFA_RS17155 PF00977 Histidine biosynthesis protein AFA_RS17160 PF00977 Histidine biosynthesis protein AFA_RS17165 PF01502 Phosphoribosyl-AMP cyclohydrolase AFA_RS17170 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFA_RS17175 PF01230 HIT domain AFA_RS17180 PF02416 mttA/Hcf106 family AFA_RS17185 PF02416 mttA/Hcf106 family AFA_RS17190 PF00902 Sec-independent protein translocase protein (TatC) AFA_RS17195 PF13180 PDZ domain AFA_RS17195 PF13365 Trypsin-like peptidase domain AFA_RS17200 PF01784 NIF3 (NGG1p interacting factor 3) AFA_RS17205 PF01741 Large-conductance mechanosensitive channel, MscL AFA_RS17210 PF00355 Rieske [2Fe-2S] domain AFA_RS17215 PF00032 Cytochrome b(C-terminal)/b6/petD AFA_RS17215 PF00033 Cytochrome b(N-terminal)/b6/petB AFA_RS17220 PF02167 Cytochrome C1 family AFA_RS17225 PF13410 Glutathione S-transferase, C-terminal domain AFA_RS17225 PF13417 Glutathione S-transferase, N-terminal domain AFA_RS17230 PF04386 Stringent starvation protein B AFA_RS17235 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS17240 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS17245 PF13531 Bacterial extracellular solute-binding protein AFA_RS17265 PF00534 Glycosyl transferases group 1 AFA_RS17270 PF04828 Glutathione-dependent formaldehyde-activating enzyme AFA_RS17275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFA_RS17275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFA_RS17280 PF07978 NIPSNAP AFA_RS17285 PF06808 AFA_RS17285 AFA_RS17290 PF04290 AFA_RS17290 AFA_RS17295 PF03480 Bacterial extracellular solute-binding protein, family 7 AFA_RS17300 PF01370 NAD dependent epimerase/dehydratase family AFA_RS17305 PF01261 Xylose isomerase-like TIM barrel AFA_RS17310 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFA_RS17310 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFA_RS17315 PF00920 Dehydratase family AFA_RS17320 PF00392 Bacterial regulatory proteins, gntR family AFA_RS17320 PF07729 FCD domain AFA_RS17325 PF01037 AsnC family AFA_RS17325 PF13412 Winged helix-turn-helix DNA-binding AFA_RS17330 PF03301 Tryptophan 2,3-dioxygenase AFA_RS17335 PF07859 alpha/beta hydrolase fold AFA_RS17340 PF01042 Endoribonuclease L-PSP AFA_RS17345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS17345 PF03466 LysR substrate binding domain AFA_RS17350 PF02548 Ketopantoate hydroxymethyltransferase AFA_RS17355 PF00248 Aldo/keto reductase family AFA_RS17360 PF07690 Major Facilitator Superfamily AFA_RS17365 PF00330 Aconitase family (aconitate hydratase) AFA_RS17365 PF00694 Aconitase C-terminal domain AFA_RS17370 PF00990 GGDEF domain AFA_RS17370 PF02743 Cache domain AFA_RS17375 PF13649 Methyltransferase domain AFA_RS17380 PF05013 N-formylglutamate amidohydrolase AFA_RS17385 PF00795 Carbon-nitrogen hydrolase AFA_RS17390 PF13354 Beta-lactamase enzyme family AFA_RS17400 PF07969 Amidohydrolase family AFA_RS17405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS17405 PF03466 LysR substrate binding domain AFA_RS17410 PF13561 Enoyl-(Acyl carrier protein) reductase AFA_RS17415 PF00857 Isochorismatase family AFA_RS17420 PF02678 Pirin AFA_RS17420 PF05726 Pirin C-terminal cupin domain AFA_RS17425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS17425 PF03466 LysR substrate binding domain AFA_RS17430 PF05532 CsbD-like AFA_RS17435 PF04972 BON domain AFA_RS17440 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFA_RS17445 PF00158 Sigma-54 interaction domain AFA_RS17445 PF01590 GAF domain AFA_RS17445 PF02954 Bacterial regulatory protein, Fis family AFA_RS17450 PF07804 HipA-like C-terminal domain AFA_RS17450 PF13657 HipA N-terminal domain AFA_RS17465 PF00593 TonB dependent receptor AFA_RS17465 PF07660 Secretin and TonB N terminus short domain AFA_RS17465 PF07715 TonB-dependent Receptor Plug Domain AFA_RS17470 PF04773 FecR protein AFA_RS17470 PF16220 AFA_RS17470 AFA_RS17475 PF04542 Sigma-70 region 2 AFA_RS17475 PF08281 Sigma-70, region 4 AFA_RS17485 PF01380 SIS domain AFA_RS17485 PF13522 Glutamine amidotransferase domain AFA_RS17490 PF01037 AsnC family AFA_RS17490 PF13412 Winged helix-turn-helix DNA-binding AFA_RS17500 PF00534 Glycosyl transferases group 1 AFA_RS17500 PF13439 Glycosyltransferase Family 4 AFA_RS17505 PF00132 Bacterial transferase hexapeptide (six repeats) AFA_RS17505 PF12804 MobA-like NTP transferase domain AFA_RS17515 PF00293 NUDIX domain AFA_RS17515 PF15916 AFA_RS17515 AFA_RS17520 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFA_RS17520 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AFA_RS17520 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFA_RS17525 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFA_RS17530 PF11174 AFA_RS17530 AFA_RS17535 PF00510 Cytochrome c oxidase subunit III AFA_RS17540 PF11137 AFA_RS17540 AFA_RS17545 PF02104 AFA_RS17545 AFA_RS17555 PF02628 AFA_RS17555 AFA_RS17560 PF01040 UbiA prenyltransferase family AFA_RS17565 PF12833 Helix-turn-helix domain AFA_RS17575 PF00027 Cyclic nucleotide-binding domain AFA_RS17575 PF00999 Sodium/hydrogen exchanger family AFA_RS17585 PF00593 TonB dependent receptor AFA_RS17585 PF07715 TonB-dependent Receptor Plug Domain AFA_RS17590 PF00140 Sigma-70 factor, region 1 AFA_RS17590 PF04542 Sigma-70 region 2 AFA_RS17590 PF04545 Sigma-70, region 4 AFA_RS17595 PF00756 Putative esterase AFA_RS17600 PF00107 Zinc-binding dehydrogenase AFA_RS17600 PF08240 Alcohol dehydrogenase GroES-like domain AFA_RS17605 PF13091 PLD-like domain AFA_RS17610 PF03372 Endonuclease/Exonuclease/phosphatase family AFA_RS17615 PF00152 tRNA synthetases class II (D, K and N) AFA_RS17615 PF01336 OB-fold nucleic acid binding domain AFA_RS17615 PF02938 GAD domain AFA_RS17620 PF04367 AFA_RS17620 AFA_RS17625 PF09723 AFA_RS17625 AFA_RS17630 PF07399 AFA_RS17630 AFA_RS17635 PF01040 UbiA prenyltransferase family AFA_RS17640 PF00155 Aminotransferase class I and II AFA_RS17645 PF05962 HutD AFA_RS17650 PF01979 Amidohydrolase family AFA_RS17655 PF01979 Amidohydrolase family AFA_RS17660 PF01381 Helix-turn-helix AFA_RS17670 PF00221 Aromatic amino acid lyase AFA_RS17675 PF01175 Urocanase AFA_RS17675 PF17391 AFA_RS17675 AFA_RS17675 PF17392 AFA_RS17675 AFA_RS17680 PF00392 Bacterial regulatory proteins, gntR family AFA_RS17680 PF07702 UTRA domain AFA_RS17685 PF12833 Helix-turn-helix domain AFA_RS17690 PF13302 Acetyltransferase (GNAT) domain AFA_RS17695 PF11158 AFA_RS17695 AFA_RS17700 PF13411 MerR HTH family regulatory protein AFA_RS17705 PF07690 Major Facilitator Superfamily AFA_RS17710 PF00583 Acetyltransferase (GNAT) family AFA_RS17715 PF00296 Luciferase-like monooxygenase AFA_RS17720 PF00043 Glutathione S-transferase, C-terminal domain AFA_RS17720 PF02798 Glutathione S-transferase, N-terminal domain AFA_RS17725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS17725 PF03466 LysR substrate binding domain AFA_RS17730 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS17730 PF00175 Oxidoreductase NAD-binding domain AFA_RS17730 PF00970 Oxidoreductase FAD-binding domain AFA_RS17735 PF00355 Rieske [2Fe-2S] domain AFA_RS17740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFA_RS17740 PF03466 LysR substrate binding domain AFA_RS17745 PF00155 Aminotransferase class I and II AFA_RS17750 PF13350 Tyrosine phosphatase family AFA_RS17755 PF12706 Beta-lactamase superfamily domain AFA_RS17765 PF01784 NIF3 (NGG1p interacting factor 3) AFA_RS17775 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFA_RS17780 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS17790 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS17800 PF00111 2Fe-2S iron-sulfur cluster binding domain AFA_RS17800 PF00175 Oxidoreductase NAD-binding domain AFA_RS17800 PF00970 Oxidoreductase FAD-binding domain AFA_RS17805 PF03928 Domain of unknown function (DUF336) AFA_RS17810 PF00171 Aldehyde dehydrogenase family AFA_RS17815 PF14518 Iron-containing redox enzyme AFA_RS17820 PF01019 Gamma-glutamyltranspeptidase AFA_RS17830 PF01925 AFA_RS17830 AFA_RS17835 PF00392 Bacterial regulatory proteins, gntR family AFA_RS17835 PF07729 FCD domain AFA_RS17840 PF00440 Bacterial regulatory proteins, tetR family AFA_RS17845 PF07690 Major Facilitator Superfamily AFA_RS17850 PF00210 Ferritin-like domain AFA_RS17860 PF07690 Major Facilitator Superfamily AFA_RS17865 PF00436 Single-strand binding protein family AFA_RS17870 PF07690 Major Facilitator Superfamily AFA_RS17880 PF01966 HD domain AFA_RS17880 PF13286 Phosphohydrolase-associated domain AFA_RS17885 PF01761 3-dehydroquinate synthase AFA_RS17890 PF01202 Shikimate kinase AFA_RS17895 PF00905 Penicillin binding protein transpeptidase domain AFA_RS17895 PF00912 Transglycosylase AFA_RS17895 PF17092 AFA_RS17895 AFA_RS17900 PF13627 AFA_RS17900 AFA_RS17905 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFA_RS17905 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFA_RS17910 PF00563 EAL domain AFA_RS17910 PF00990 GGDEF domain AFA_RS17915 PF01578 AFA_RS17915 AFA_RS17920 PF05140 AFA_RS17920 AFA_RS17925 PF00034 Cytochrome c AFA_RS17930 PF01926 50S ribosome-binding GTPase AFA_RS17935 PF00490 Delta-aminolevulinic acid dehydratase AFA_RS17940 PF02683 AFA_RS17940 AFA_RS17940 PF11412 Disulphide bond corrector protein DsbC AFA_RS17940 PF13899 Thioredoxin-like AFA_RS17945 PF03091 CutA1 divalent ion tolerance protein AFA_RS17950 PF12833 Helix-turn-helix domain AFA_RS17950 PF14525 AFA_RS17950 AFA_RS17955 PF01613 Flavin reductase like domain AFA_RS17960 PF00296 Luciferase-like monooxygenase AFA_RS17965 PF01196 Ribosomal protein L17 AFA_RS17970 PF01000 RNA polymerase Rpb3/RpoA insert domain AFA_RS17970 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFA_RS17970 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFA_RS17975 PF00163 Ribosomal protein S4/S9 N-terminal domain AFA_RS17975 PF01479 S4 domain AFA_RS17980 PF00411 Ribosomal protein S11 AFA_RS17985 PF00416 Ribosomal protein S13/S18 AFA_RS17990 PF00444 Ribosomal protein L36 AFA_RS17995 PF01176 Translation initiation factor 1A / IF-1 AFA_RS18000 PF00344 SecY translocase AFA_RS18005 PF00828 Ribosomal protein L18e/L15 AFA_RS18010 PF00327 Ribosomal protein L30p/L7e AFA_RS18015 PF00333 Ribosomal protein S5, N-terminal domain AFA_RS18015 PF03719 Ribosomal protein S5, C-terminal domain AFA_RS18020 PF00861 Ribosomal L18p/L5e family AFA_RS18025 PF00347 Ribosomal protein L6 AFA_RS18030 PF00410 Ribosomal protein S8 AFA_RS18035 PF00253 Ribosomal protein S14p/S29e AFA_RS18040 PF00281 Ribosomal protein L5 AFA_RS18040 PF00673 ribosomal L5P family C-terminus AFA_RS18045 PF17136 AFA_RS18045 AFA_RS18050 PF00238 Ribosomal protein L14p/L23e AFA_RS18055 PF00563 EAL domain AFA_RS18055 PF00990 GGDEF domain AFA_RS18055 PF16448 AFA_RS18055 AFA_RS18060 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP AFA_RS18065 PF03160 Calx-beta domain AFA_RS18065 PF13519 von Willebrand factor type A domain AFA_RS18070 PF00196 Bacterial regulatory proteins, luxR family AFA_RS18075 PF13437 HlyD family secretion protein AFA_RS18075 PF13533 Biotin-lipoyl like AFA_RS18080 PF00005 ABC transporter AFA_RS18080 PF00664 ABC transporter transmembrane region AFA_RS18090 PF02321 Outer membrane efflux protein AFA_RS18095 PF03895 YadA-like C-terminal region AFA_RS18095 PF05662 Coiled stalk of trimeric autotransporter adhesin AFA_RS18100 PF04185 Phosphoesterase family AFA_RS18100 PF05506 AFA_RS18100 AFA_RS18110 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS18115 PF00005 ABC transporter AFA_RS18120 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AFA_RS18125 PF13242 HAD-hyrolase-like AFA_RS18125 PF13344 Haloacid dehalogenase-like hydrolase AFA_RS18130 PF01380 SIS domain AFA_RS18130 PF01418 Helix-turn-helix domain, rpiR family AFA_RS18135 PF00171 Aldehyde dehydrogenase family AFA_RS18140 PF00440 Bacterial regulatory proteins, tetR family AFA_RS18145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFA_RS18145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFA_RS18145 PF09317 AFA_RS18145 AFA_RS18150 PF00108 Thiolase, N-terminal domain AFA_RS18150 PF02803 Thiolase, C-terminal domain AFA_RS18155 PF00378 Enoyl-CoA hydratase/isomerase family AFA_RS18155 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFA_RS18155 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFA_RS18160 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AFA_RS18165 PF14539 Domain of unknown function (DUF4442) AFA_RS18170 PF16036 AFA_RS18170 AFA_RS18175 PF00501 AMP-binding enzyme AFA_RS18175 PF13193 AMP-binding enzyme C-terminal domain AFA_RS18180 PF00175 Oxidoreductase NAD-binding domain AFA_RS18180 PF00258 Flavodoxin AFA_RS18180 PF00667 FAD binding domain AFA_RS18185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFA_RS18185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFA_RS18190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFA_RS18190 PF10414 Sirohaem synthase dimerisation region AFA_RS18190 PF13241 Putative NAD(P)-binding AFA_RS18190 PF14824 Sirohaem biosynthesis protein central AFA_RS18195 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS18200 PF13379 NMT1-like family AFA_RS18205 PF00005 ABC transporter AFA_RS18215 PF02627 Carboxymuconolactone decarboxylase family AFA_RS18220 PF12833 Helix-turn-helix domain AFA_RS18220 PF12852 Cupin AFA_RS18225 PF00366 Ribosomal protein S17 AFA_RS18230 PF00831 Ribosomal L29 protein AFA_RS18235 PF00252 Ribosomal protein L16p/L10e AFA_RS18240 PF00189 Ribosomal protein S3, C-terminal domain AFA_RS18240 PF07650 KH domain AFA_RS18245 PF00237 Ribosomal protein L22p/L17e AFA_RS18250 PF00203 Ribosomal protein S19 AFA_RS18255 PF00181 Ribosomal Proteins L2, RNA binding domain AFA_RS18255 PF03947 Ribosomal Proteins L2, C-terminal domain AFA_RS18260 PF00276 Ribosomal protein L23 AFA_RS18265 PF00573 Ribosomal protein L4/L1 family AFA_RS18270 PF00297 Ribosomal protein L3 AFA_RS18275 PF00005 ABC transporter AFA_RS18280 PF00528 Binding-protein-dependent transport system inner membrane component AFA_RS18280 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFA_RS18285 PF00338 Ribosomal protein S10p/S20e AFA_RS18290 PF00009 Elongation factor Tu GTP binding domain AFA_RS18290 PF03143 Elongation factor Tu C-terminal domain AFA_RS18290 PF03144 Elongation factor Tu domain 2 AFA_RS18295 PF00009 Elongation factor Tu GTP binding domain AFA_RS18295 PF00679 Elongation factor G C-terminus AFA_RS18295 PF03144 Elongation factor Tu domain 2 AFA_RS18295 PF03764 Elongation factor G, domain IV AFA_RS18295 PF14492 Elongation Factor G, domain II AFA_RS18300 PF00177 Ribosomal protein S7p/S5e AFA_RS18305 PF00164 Ribosomal protein S12/S23 AFA_RS18310 PF00072 Response regulator receiver domain AFA_RS18310 PF00486 Transcriptional regulatory protein, C terminal AFA_RS18315 PF01476 LysM domain AFA_RS18315 PF04773 FecR protein AFA_RS18320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFA_RS18320 PF05226 AFA_RS18320 AFA_RS18325 PF02311 AraC-like ligand binding domain AFA_RS18325 PF12833 Helix-turn-helix domain AFA_RS18330 PF01810 AFA_RS18330 AFA_RS18335 PF00127 Copper binding proteins, plastocyanin/azurin family AFA_RS18340 PF00623 RNA polymerase Rpb1, domain 2 AFA_RS18340 PF04983 RNA polymerase Rpb1, domain 3 AFA_RS18340 PF04997 RNA polymerase Rpb1, domain 1 AFA_RS18340 PF04998 RNA polymerase Rpb1, domain 5 AFA_RS18340 PF05000 RNA polymerase Rpb1, domain 4 AFA_RS18345 PF00562 RNA polymerase Rpb2, domain 6 AFA_RS18345 PF04560 RNA polymerase Rpb2, domain 7 AFA_RS18345 PF04561 RNA polymerase Rpb2, domain 2 AFA_RS18345 PF04563 RNA polymerase beta subunit AFA_RS18345 PF04565 RNA polymerase Rpb2, domain 3 AFA_RS18345 PF10385 RNA polymerase beta subunit external 1 domain AFA_RS18350 PF00542 Ribosomal protein L7/L12 C-terminal domain AFA_RS18350 PF16320 AFA_RS18350 AFA_RS18355 PF00466 Ribosomal protein L10 AFA_RS18360 PF00687 Ribosomal protein L1p/L10e family AFA_RS18365 PF00298 Ribosomal protein L11, RNA binding domain AFA_RS18365 PF03946 Ribosomal protein L11, N-terminal domain AFA_RS18370 PF00467 KOW motif AFA_RS18370 PF02357 Transcription termination factor nusG AFA_RS18375 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AFA_RS18385 PF00009 Elongation factor Tu GTP binding domain AFA_RS18385 PF03143 Elongation factor Tu C-terminal domain AFA_RS18385 PF03144 Elongation factor Tu domain 2 AFA_RS18405 PF02195 ParB-like nuclease domain AFA_RS18410 PF13614 AAA domain AFA_RS18415 PF02527 rRNA small subunit methyltransferase G AFA_RS18420 PF01134 Glucose inhibited division protein A AFA_RS18420 PF13932 GidA associated domain 3 AFA_RS18425 PF00155 Aminotransferase class I and II AFA_RS18430 PF00149 Calcineurin-like phosphoesterase AFA_RS18435 PF00990 GGDEF domain AFA_RS18435 PF11563 Protoglobin AFA_RS18440 PF02666 AFA_RS18440 AFA_RS18445 PF13387 AFA_RS18445 AFA_RS18450 PF00291 Pyridoxal-phosphate dependent enzyme AFA_RS18460 PF02567 Phenazine biosynthesis-like protein AFA_RS18470 PF04773 FecR protein AFA_RS18470 PF16220 AFA_RS18470 AFA_RS18475 PF03797 Autotransporter beta-domain AFA_RS18490 PF13310 AFA_RS18490 AFA_RS18495 PF01926 50S ribosome-binding GTPase AFA_RS18495 PF10396 GTP-binding protein TrmE N-terminus AFA_RS18495 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE AFA_RS18500 PF07883 Cupin domain AFA_RS18500 PF13560 Helix-turn-helix domain AFA_RS18505 PF01546 Peptidase family M20/M25/M40 AFA_RS18505 PF07687 Peptidase dimerisation domain AFA_RS18510 PF00291 Pyridoxal-phosphate dependent enzyme AFA_RS18515 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFA_RS18520 PF03401 Tripartite tricarboxylate transporter family receptor AFA_RS18525 PF13458 Periplasmic binding protein AFA_RS18530 PF02653 AFA_RS18530 AFA_RS18535 PF02653 AFA_RS18535 AFA_RS18540 PF00005 ABC transporter AFA_RS18540 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFA_RS18545 PF00005 ABC transporter AFA_RS18550 PF12697 Alpha/beta hydrolase family AFA_RS18560 PF00857 Isochorismatase family AFA_RS18565 PF01494 FAD binding domain AFA_RS18570 PF09995 AFA_RS18570 AFA_RS18575 PF00440 Bacterial regulatory proteins, tetR family AFA_RS18580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFA_RS18585 PF00199 Catalase AFA_RS18585 PF06628 Catalase-related immune-responsive AFA_RS18590 PF02096 60Kd inner membrane protein AFA_RS18590 PF14849 YidC periplasmic domain AFA_RS18595 PF01809 AFA_RS18595 AFA_RS18600 PF00825 Ribonuclease P AFA_RS18605 PF00468 Ribosomal protein L34