AFA_RS00005 SM00382 ATPases associated with a variety of cellular activities AFA_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AFA_RS00010 SM00480 DNA polymerase III beta subunit AFA_RS00015 SM00387 Histidine kinase-like ATPases AFA_RS00015 SM00433 TopoisomeraseII AFA_RS00020 SM00363 S4 RNA-binding domain AFA_RS00050 SM00849 Metallo-beta-lactamase superfamily AFA_RS00060 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS00060 SM00895 AFA_RS00060 AFA_RS00085 SM00881 CoA binding domain AFA_RS00095 SM01007 Class II Aldolase and Adducin N-terminal domain AFA_RS00120 SM00382 ATPases associated with a variety of cellular activities AFA_RS00140 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS00140 SM00866 AFA_RS00140 AFA_RS00160 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS00160 SM00895 AFA_RS00160 AFA_RS00180 SM00382 ATPases associated with a variety of cellular activities AFA_RS00200 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFA_RS00205 SM00829 Enoylreductase AFA_RS00230 SM00346 helix_turn_helix isocitrate lyase regulation AFA_RS00245 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS00260 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS00335 SM00422 helix_turn_helix, mercury resistance AFA_RS00375 SM00903 Flavin reductase like domain AFA_RS00385 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS00390 SM00903 Flavin reductase like domain AFA_RS00395 SM00382 ATPases associated with a variety of cellular activities AFA_RS00410 SM00382 ATPases associated with a variety of cellular activities AFA_RS00415 SM00382 ATPases associated with a variety of cellular activities AFA_RS00450 SM00965 Secretin and TonB N terminus short domain AFA_RS00465 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS00485 SM00382 ATPases associated with a variety of cellular activities AFA_RS00485 SM00930 AFA_RS00485 AFA_RS00550 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS00610 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AFA_RS00645 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFA_RS00645 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFA_RS00645 SM00493 AFA_RS00645 AFA_RS00670 SM00878 Biotin carboxylase C-terminal domain AFA_RS00670 SM01209 AFA_RS00670 AFA_RS00695 SM00422 helix_turn_helix, mercury resistance AFA_RS00700 SM00849 Metallo-beta-lactamase superfamily AFA_RS00720 SM00836 DALR anticodon binding domain AFA_RS00720 SM01016 Arginyl tRNA synthetase N terminal dom AFA_RS00750 SM00917 LeuA allosteric (dimerisation) domain AFA_RS00840 SM00487 DEAD-like helicases superfamily AFA_RS00840 SM00490 helicase superfamily c-terminal domain AFA_RS00920 SM00382 ATPases associated with a variety of cellular activities AFA_RS00980 SM00248 ankyrin repeats AFA_RS00985 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS00985 SM00895 AFA_RS00985 AFA_RS01010 SM00052 Putative diguanylate phosphodiesterase AFA_RS01010 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS01010 SM00267 diguanylate cyclase AFA_RS01040 SM00870 AFA_RS01040 AFA_RS01055 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS01060 SM00382 ATPases associated with a variety of cellular activities AFA_RS01065 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFA_RS01080 SM00100 Cyclic nucleotide-monophosphate binding domain AFA_RS01090 SM00382 ATPases associated with a variety of cellular activities AFA_RS01110 SM00382 ATPases associated with a variety of cellular activities AFA_RS01120 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS01200 SM00357 Cold shock protein domain AFA_RS01225 SM00936 Penicillin-binding protein 5, C-terminal domain AFA_RS01250 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_RS01260 SM00986 Uracil DNA glycosylase superfamily AFA_RS01260 SM00987 UreE urease accessory protein, C-terminal domain AFA_RS01295 SM00100 Cyclic nucleotide-monophosphate binding domain AFA_RS01295 SM00419 helix_turn_helix, cAMP Regulatory protein AFA_RS01370 SM00052 Putative diguanylate phosphodiesterase AFA_RS01370 SM00267 diguanylate cyclase AFA_RS01385 SM00925 MltA specific insert domain AFA_RS01400 SM00052 Putative diguanylate phosphodiesterase AFA_RS01400 SM00862 Transcriptional regulatory protein, C terminal AFA_RS01405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_RS01405 SM01049 AFA_RS01405 AFA_RS01415 SM00822 AFA_RS01415 AFA_RS01440 SM00823 Phosphopantetheine attachment site AFA_RS01460 SM00382 ATPases associated with a variety of cellular activities AFA_RS01465 SM00382 ATPases associated with a variety of cellular activities AFA_RS01485 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS01500 SM00382 ATPases associated with a variety of cellular activities AFA_RS01530 SM00382 ATPases associated with a variety of cellular activities AFA_RS01545 SM00490 helicase superfamily c-terminal domain AFA_RS01570 SM01091 Transporter associated domain AFA_RS01625 SM00903 Flavin reductase like domain AFA_RS01650 SM00382 ATPases associated with a variety of cellular activities AFA_RS01665 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS01665 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFA_RS01670 SM00382 ATPases associated with a variety of cellular activities AFA_RS01685 SM01130 AFA_RS01685 AFA_RS01730 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS01745 SM00487 DEAD-like helicases superfamily AFA_RS01745 SM00490 helicase superfamily c-terminal domain AFA_RS01825 SM00421 helix_turn_helix, Lux Regulon AFA_RS01875 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS01875 SM00448 cheY-homologous receiver domain AFA_RS01885 SM00862 Transcriptional regulatory protein, C terminal AFA_RS01950 SM00382 ATPases associated with a variety of cellular activities AFA_RS01950 SM01086 C-terminal, D2-small domain, of ClpB protein AFA_RS01970 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFA_RS01980 SM00382 ATPases associated with a variety of cellular activities AFA_RS02025 SM00996 S-adenosyl-L-homocysteine hydrolase AFA_RS02025 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFA_RS02110 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS02110 SM00895 AFA_RS02110 AFA_RS02120 SM00346 helix_turn_helix isocitrate lyase regulation AFA_RS02165 SM00487 DEAD-like helicases superfamily AFA_RS02195 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS02220 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS02220 SM00895 AFA_RS02220 AFA_RS02235 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS02235 SM00866 AFA_RS02235 AFA_RS02240 SM00344 helix_turn_helix ASNC type AFA_RS02260 SM00420 helix_turn_helix, Deoxyribose operon repressor AFA_RS02260 SM01134 AFA_RS02260 AFA_RS02265 SM00382 ATPases associated with a variety of cellular activities AFA_RS02320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFA_RS02330 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFA_RS02335 SM00363 S4 RNA-binding domain AFA_RS02370 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS02390 SM00387 Histidine kinase-like ATPases AFA_RS02400 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AFA_RS02410 SM00644 AFA_RS02410 AFA_RS02425 SM00382 ATPases associated with a variety of cellular activities AFA_RS02425 SM00962 SRP54-type protein, GTPase domain AFA_RS02425 SM00963 SRP54-type protein, helical bundle domain AFA_RS02435 SM00257 Lysin motif AFA_RS02480 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS02500 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS02500 SM00448 cheY-homologous receiver domain AFA_RS02515 SM01007 Class II Aldolase and Adducin N-terminal domain AFA_RS02690 SM01007 Class II Aldolase and Adducin N-terminal domain AFA_RS02715 SM00984 UDP binding domain AFA_RS02780 SM00849 Metallo-beta-lactamase superfamily AFA_RS02785 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFA_RS02785 SM01232 AFA_RS02785 AFA_RS02790 SM00028 Tetratricopeptide repeats AFA_RS02810 SM01400 AFA_RS02810 AFA_RS02850 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS02860 SM00382 ATPases associated with a variety of cellular activities AFA_RS02870 SM00947 Carbonic anhydrase AFA_RS02885 SM00382 ATPases associated with a variety of cellular activities AFA_RS02925 SM00028 Tetratricopeptide repeats AFA_RS02935 SM00822 AFA_RS02935 AFA_RS02940 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS02970 SM00382 ATPases associated with a variety of cellular activities AFA_RS02975 SM00382 ATPases associated with a variety of cellular activities AFA_RS03040 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFA_RS03040 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFA_RS03045 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFA_RS03060 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_RS03070 SM00852 Probable molybdopterin binding domain AFA_RS03075 SM00852 Probable molybdopterin binding domain AFA_RS03095 SM00421 helix_turn_helix, Lux Regulon AFA_RS03095 SM00448 cheY-homologous receiver domain AFA_RS03100 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFA_RS03100 SM00091 PAS domain AFA_RS03100 SM00387 Histidine kinase-like ATPases AFA_RS03100 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS03135 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_RS03135 SM00876 Biotin and Thiamin Synthesis associated domain AFA_RS03195 SM00052 Putative diguanylate phosphodiesterase AFA_RS03195 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFA_RS03195 SM00091 PAS domain AFA_RS03195 SM00267 diguanylate cyclase AFA_RS03205 SM01091 Transporter associated domain AFA_RS03220 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_RS03245 SM01323 AFA_RS03245 AFA_RS03365 SM00919 Malic enzyme, NAD binding domain AFA_RS03365 SM01274 AFA_RS03365 AFA_RS03385 SM00861 Transketolase, pyrimidine binding domain AFA_RS03390 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFA_RS03420 SM00852 Probable molybdopterin binding domain AFA_RS03435 SM01001 AIR carboxylase AFA_RS03490 SM00903 Flavin reductase like domain AFA_RS03520 SM00382 ATPases associated with a variety of cellular activities AFA_RS03535 SM00382 ATPases associated with a variety of cellular activities AFA_RS03585 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_RS03595 SM00341 Helicase and RNase D C-terminal AFA_RS03595 SM00487 DEAD-like helicases superfamily AFA_RS03595 SM00490 helicase superfamily c-terminal domain AFA_RS03595 SM00956 AFA_RS03595 AFA_RS03615 SM00382 ATPases associated with a variety of cellular activities AFA_RS03685 SM00842 Cell division protein FtsA AFA_RS03690 SM00864 Tubulin/FtsZ family, GTPase domain AFA_RS03690 SM00865 Tubulin/FtsZ family, C-terminal domain AFA_RS03710 SM00957 SecA DEAD-like domain AFA_RS03710 SM00958 SecA preprotein cross-linking domain AFA_RS03720 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_RS03720 SM00924 MgtE intracellular N domain AFA_RS03760 SM00382 ATPases associated with a variety of cellular activities AFA_RS03760 SM00930 AFA_RS03760 AFA_RS03775 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS03775 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFA_RS03785 SM00382 ATPases associated with a variety of cellular activities AFA_RS03815 SM00650 Ribosomal RNA adenine dimethylases AFA_RS03835 SM00563 Phosphate acyltransferases AFA_RS03845 SM00836 DALR anticodon binding domain AFA_RS03925 SM00853 MutL C terminal dimerisation domain AFA_RS03925 SM01340 AFA_RS03925 AFA_RS03955 SM00646 AFA_RS03955 AFA_RS03975 SM00919 Malic enzyme, NAD binding domain AFA_RS03975 SM01274 AFA_RS03975 AFA_RS03990 SM01130 AFA_RS03990 AFA_RS03995 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS03995 SM00895 AFA_RS03995 AFA_RS04065 SM00382 ATPases associated with a variety of cellular activities AFA_RS04090 SM00382 ATPases associated with a variety of cellular activities AFA_RS04100 SM00493 AFA_RS04100 AFA_RS04110 SM00382 ATPases associated with a variety of cellular activities AFA_RS04125 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AFA_RS04130 SM00851 MGS-like domain AFA_RS04130 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFA_RS04140 SM00822 AFA_RS04140 AFA_RS04145 SM00855 Phosphoglycerate mutase family AFA_RS04160 SM01103 AFA_RS04160 AFA_RS04170 SM00382 ATPases associated with a variety of cellular activities AFA_RS04215 SM00382 ATPases associated with a variety of cellular activities AFA_RS04235 SM00448 cheY-homologous receiver domain AFA_RS04235 SM00862 Transcriptional regulatory protein, C terminal AFA_RS04240 SM00387 Histidine kinase-like ATPases AFA_RS04250 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS04315 SM00155 Phospholipase D. Active site motifs. AFA_RS04340 SM01130 AFA_RS04340 AFA_RS04385 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AFA_RS04390 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AFA_RS04390 SM00534 ATPase domain of DNA mismatch repair MUTS family AFA_RS04410 SM00382 ATPases associated with a variety of cellular activities AFA_RS04425 SM00382 ATPases associated with a variety of cellular activities AFA_RS04465 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFA_RS04510 SM00346 helix_turn_helix isocitrate lyase regulation AFA_RS04525 SM01091 Transporter associated domain AFA_RS04545 SM00028 Tetratricopeptide repeats AFA_RS04550 SM00840 AFA_RS04550 AFA_RS04555 SM00478 endonuclease III AFA_RS04585 SM00244 prohibitin homologues AFA_RS04595 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS04630 SM00382 ATPases associated with a variety of cellular activities AFA_RS04635 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AFA_RS04635 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AFA_RS04740 SM00382 ATPases associated with a variety of cellular activities AFA_RS04750 SM00382 ATPases associated with a variety of cellular activities AFA_RS04765 SM00841 Elongation factor P, C-terminal AFA_RS04765 SM01185 AFA_RS04765 AFA_RS04820 SM00091 PAS domain AFA_RS04820 SM00382 ATPases associated with a variety of cellular activities AFA_RS04830 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS04840 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS04840 SM00866 AFA_RS04840 AFA_RS04875 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS04875 SM00895 AFA_RS04875 AFA_RS04885 SM00919 Malic enzyme, NAD binding domain AFA_RS04885 SM01274 AFA_RS04885 AFA_RS04890 SM00861 Transketolase, pyrimidine binding domain AFA_RS04925 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_RS04925 SM00732 Likely ribonuclease with RNase H fold. AFA_RS04930 SM00487 DEAD-like helicases superfamily AFA_RS04930 SM00491 AFA_RS04930 AFA_RS04975 SM00363 S4 RNA-binding domain AFA_RS04990 SM00822 AFA_RS04990 AFA_RS05085 SM00363 S4 RNA-binding domain AFA_RS05095 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_RS05115 SM00838 Elongation factor G C-terminus AFA_RS05140 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS05150 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFA_RS05150 SM00474 3'-5' exonuclease AFA_RS05150 SM00475 5'-3' exonuclease AFA_RS05150 SM00479 AFA_RS05150 AFA_RS05150 SM00482 DNA polymerase A domain AFA_RS05170 SM00450 Rhodanese Homology Domain AFA_RS05185 SM00861 Transketolase, pyrimidine binding domain AFA_RS05215 SM00382 ATPases associated with a variety of cellular activities AFA_RS05230 SM00670 Large family of predicted nucleotide-binding domains AFA_RS05285 SM01005 Alanine racemase, C-terminal domain AFA_RS05290 SM00822 AFA_RS05290 AFA_RS05295 SM00382 ATPases associated with a variety of cellular activities AFA_RS05315 SM00382 ATPases associated with a variety of cellular activities AFA_RS05345 SM00052 Putative diguanylate phosphodiesterase AFA_RS05360 SM00382 ATPases associated with a variety of cellular activities AFA_RS05360 SM00487 DEAD-like helicases superfamily AFA_RS05360 SM00490 helicase superfamily c-terminal domain AFA_RS05360 SM00847 Helicase associated domain (HA2) Add an annotation AFA_RS05365 SM00481 DNA polymerase alpha chain like domain AFA_RS05415 SM00382 ATPases associated with a variety of cellular activities AFA_RS05430 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_RS05485 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS05485 SM00895 AFA_RS05485 AFA_RS05660 SM00849 Metallo-beta-lactamase superfamily AFA_RS05665 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFA_RS05680 SM00422 helix_turn_helix, mercury resistance AFA_RS05745 SM00073 Histidine Phosphotransfer domain AFA_RS05745 SM00260 Two component signalling adaptor domain AFA_RS05745 SM00387 Histidine kinase-like ATPases AFA_RS05745 SM01231 AFA_RS05745 AFA_RS05750 SM00260 Two component signalling adaptor domain AFA_RS05755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_RS05755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_RS05760 SM00138 Methyltransferase, chemotaxis proteins AFA_RS05765 SM00448 cheY-homologous receiver domain AFA_RS05770 SM00448 cheY-homologous receiver domain AFA_RS05790 SM00382 ATPases associated with a variety of cellular activities AFA_RS05790 SM00962 SRP54-type protein, GTPase domain AFA_RS05800 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS05815 SM00858 AFA_RS05815 AFA_RS05860 SM00047 Lysozyme subfamily 2 AFA_RS05875 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_RS05875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_RS05885 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_RS05885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_RS05890 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_RS05895 SM00479 AFA_RS05895 AFA_RS05945 SM00382 ATPases associated with a variety of cellular activities AFA_RS06045 SM00382 ATPases associated with a variety of cellular activities AFA_RS06080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_RS06085 SM00091 PAS domain AFA_RS06085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_RS06085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_RS06145 SM00965 Secretin and TonB N terminus short domain AFA_RS06250 SM00357 Cold shock protein domain AFA_RS06275 SM00220 Serine/Threonine protein kinases, catalytic domain AFA_RS06310 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS06370 SM00387 Histidine kinase-like ATPases AFA_RS06370 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS06375 SM00448 cheY-homologous receiver domain AFA_RS06375 SM00862 Transcriptional regulatory protein, C terminal AFA_RS06405 SM00965 Secretin and TonB N terminus short domain AFA_RS06495 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS06510 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS06510 SM00895 AFA_RS06510 AFA_RS06520 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS06605 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS06610 SM00448 cheY-homologous receiver domain AFA_RS06610 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFA_RS06615 SM00091 PAS domain AFA_RS06615 SM00387 Histidine kinase-like ATPases AFA_RS06615 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS06615 SM00448 cheY-homologous receiver domain AFA_RS06620 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_RS06620 SM00924 MgtE intracellular N domain AFA_RS06925 SM00635 Bacterial Ig-like domain 2 AFA_RS07200 SM00479 AFA_RS07200 AFA_RS07205 SM00267 diguanylate cyclase AFA_RS07220 SM00344 helix_turn_helix ASNC type AFA_RS07260 SM00382 ATPases associated with a variety of cellular activities AFA_RS07280 SM00354 helix_turn _helix lactose operon repressor AFA_RS07310 SM00387 Histidine kinase-like ATPases AFA_RS07310 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS07315 SM00448 cheY-homologous receiver domain AFA_RS07315 SM00862 Transcriptional regulatory protein, C terminal AFA_RS07405 SM00357 Cold shock protein domain AFA_RS07415 SM00382 ATPases associated with a variety of cellular activities AFA_RS07415 SM01086 C-terminal, D2-small domain, of ClpB protein AFA_RS07455 SM00382 ATPases associated with a variety of cellular activities AFA_RS07460 SM00382 ATPases associated with a variety of cellular activities AFA_RS07515 SM00904 Riboflavin kinase AFA_RS07560 SM00382 ATPases associated with a variety of cellular activities AFA_RS07585 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS07615 SM00477 DNA/RNA non-specific endonuclease AFA_RS07615 SM00892 DNA/RNA non-specific endonuclease AFA_RS07640 SM00422 helix_turn_helix, mercury resistance AFA_RS07675 SM00382 ATPases associated with a variety of cellular activities AFA_RS07675 SM00994 ClpX C4-type zinc finger AFA_RS07675 SM01086 C-terminal, D2-small domain, of ClpB protein AFA_RS07680 SM00382 ATPases associated with a variety of cellular activities AFA_RS07680 SM00464 Found in ATP-dependent protease La (LON) AFA_RS07700 SM00487 DEAD-like helicases superfamily AFA_RS07700 SM00490 helicase superfamily c-terminal domain AFA_RS07705 SM00226 Low molecular weight phosphatase family AFA_RS07755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_RS07795 SM00382 ATPases associated with a variety of cellular activities AFA_RS07805 SM00849 Metallo-beta-lactamase superfamily AFA_RS07815 SM00481 DNA polymerase alpha chain like domain AFA_RS07825 SM01211 AFA_RS07825 AFA_RS07830 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_RS07830 SM01240 AFA_RS07830 AFA_RS07905 SM00226 Low molecular weight phosphatase family AFA_RS07915 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFA_RS07920 SM00857 Resolvase, N terminal domain AFA_RS08005 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFA_RS08015 SM01234 AFA_RS08015 AFA_RS08075 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS08145 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS08160 SM00450 Rhodanese Homology Domain AFA_RS08165 SM00232 JAB/MPN domain AFA_RS08210 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFA_RS08225 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS08230 SM00917 LeuA allosteric (dimerisation) domain AFA_RS08240 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFA_RS08250 SM00882 Coenzyme A transferase AFA_RS08255 SM00882 Coenzyme A transferase AFA_RS08305 SM00421 helix_turn_helix, Lux Regulon AFA_RS08340 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS08365 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS08375 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS08380 SM00990 AFA_RS08380 AFA_RS08385 SM00488 AFA_RS08385 AFA_RS08385 SM00491 AFA_RS08385 AFA_RS08430 SM00344 helix_turn_helix ASNC type AFA_RS08465 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS08480 SM00382 ATPases associated with a variety of cellular activities AFA_RS08505 SM00382 ATPases associated with a variety of cellular activities AFA_RS08505 SM00989 AFA_RS08505 AFA_RS08595 SM00354 helix_turn _helix lactose operon repressor AFA_RS08625 SM00244 prohibitin homologues AFA_RS08665 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFA_RS08715 SM00382 ATPases associated with a variety of cellular activities AFA_RS08735 SM00873 B3/4 domain AFA_RS08735 SM00874 tRNA synthetase B5 domain AFA_RS08735 SM00896 Ferredoxin-fold anticodon binding domain AFA_RS08740 SM00411 bacterial (prokaryotic) histone like domain AFA_RS08745 SM00422 helix_turn_helix, mercury resistance AFA_RS08760 SM00382 ATPases associated with a variety of cellular activities AFA_RS08775 SM00382 ATPases associated with a variety of cellular activities AFA_RS08800 SM00421 helix_turn_helix, Lux Regulon AFA_RS08855 SM00357 Cold shock protein domain AFA_RS08920 SM00382 ATPases associated with a variety of cellular activities AFA_RS08980 SM00829 Enoylreductase AFA_RS08985 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS09000 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS09045 SM00481 DNA polymerase alpha chain like domain AFA_RS09060 SM01144 AFA_RS09060 AFA_RS09150 SM00387 Histidine kinase-like ATPases AFA_RS09150 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS09155 SM00382 ATPases associated with a variety of cellular activities AFA_RS09155 SM00448 cheY-homologous receiver domain AFA_RS09180 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFA_RS09200 SM00834 Putative regulatory protein AFA_RS09230 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS09260 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS09295 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_RS09300 SM01230 AFA_RS09300 AFA_RS09325 SM00382 ATPases associated with a variety of cellular activities AFA_RS09350 SM00487 DEAD-like helicases superfamily AFA_RS09350 SM00490 helicase superfamily c-terminal domain AFA_RS09370 SM00382 ATPases associated with a variety of cellular activities AFA_RS09410 SM00382 ATPases associated with a variety of cellular activities AFA_RS09415 SM00382 ATPases associated with a variety of cellular activities AFA_RS09445 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFA_RS09480 SM00248 ankyrin repeats AFA_RS09665 SM00220 Serine/Threonine protein kinases, catalytic domain AFA_RS09715 SM00528 Domain in histone-like proteins of HNS family AFA_RS09740 SM00487 DEAD-like helicases superfamily AFA_RS09745 SM00487 DEAD-like helicases superfamily AFA_RS09805 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS09815 SM00487 DEAD-like helicases superfamily AFA_RS09815 SM00490 helicase superfamily c-terminal domain AFA_RS09885 SM01043 Bacterial transcriptional activator domain AFA_RS09935 SM00382 ATPases associated with a variety of cellular activities AFA_RS09935 SM01086 C-terminal, D2-small domain, of ClpB protein AFA_RS10020 SM00867 YceI-like domain AFA_RS10025 SM00867 YceI-like domain AFA_RS10050 SM00248 ankyrin repeats AFA_RS10165 SM00935 Outer membrane protein (OmpH-like) AFA_RS10175 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFA_RS10220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFA_RS10275 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFA_RS10275 SM00091 PAS domain AFA_RS10275 SM00387 Histidine kinase-like ATPases AFA_RS10275 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS10280 SM00421 helix_turn_helix, Lux Regulon AFA_RS10280 SM00448 cheY-homologous receiver domain AFA_RS10300 SM00838 Elongation factor G C-terminus AFA_RS10300 SM00889 Elongation factor G, domain IV AFA_RS10310 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFA_RS10320 SM00422 helix_turn_helix, mercury resistance AFA_RS10345 SM00822 AFA_RS10345 AFA_RS10365 SM00346 helix_turn_helix isocitrate lyase regulation AFA_RS10410 SM00382 ATPases associated with a variety of cellular activities AFA_RS10475 SM00072 Guanylate kinase homologues. AFA_RS10480 SM01409 AFA_RS10480 AFA_RS10485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFA_RS10485 SM00954 Region found in RelA / SpoT proteins AFA_RS10520 SM00363 S4 RNA-binding domain AFA_RS10540 SM00938 Nitrogen regulatory protein P-II AFA_RS10580 SM00257 Lysin motif AFA_RS10595 SM01207 AFA_RS10595 AFA_RS10630 SM00382 ATPases associated with a variety of cellular activities AFA_RS10645 SM00382 ATPases associated with a variety of cellular activities AFA_RS10695 SM00382 ATPases associated with a variety of cellular activities AFA_RS10705 SM00346 helix_turn_helix isocitrate lyase regulation AFA_RS10745 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS10790 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFA_RS10795 SM01329 AFA_RS10795 AFA_RS10820 SM00421 helix_turn_helix, Lux Regulon AFA_RS10820 SM00448 cheY-homologous receiver domain AFA_RS10825 SM00387 Histidine kinase-like ATPases AFA_RS10825 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS10855 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_RS10890 SM00240 Forkhead associated domain AFA_RS10900 SM00858 AFA_RS10900 AFA_RS10925 SM00965 Secretin and TonB N terminus short domain AFA_RS10975 SM00881 CoA binding domain AFA_RS11005 SM00382 ATPases associated with a variety of cellular activities AFA_RS11010 SM00448 cheY-homologous receiver domain AFA_RS11010 SM00862 Transcriptional regulatory protein, C terminal AFA_RS11015 SM00387 Histidine kinase-like ATPases AFA_RS11015 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS11030 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS11080 SM01359 AFA_RS11080 AFA_RS11080 SM01360 AFA_RS11080 AFA_RS11095 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_RS11140 SM00387 Histidine kinase-like ATPases AFA_RS11140 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS11145 SM00448 cheY-homologous receiver domain AFA_RS11145 SM00862 Transcriptional regulatory protein, C terminal AFA_RS11165 SM00382 ATPases associated with a variety of cellular activities AFA_RS11195 SM00357 Cold shock protein domain AFA_RS11215 SM00411 bacterial (prokaryotic) histone like domain AFA_RS11240 SM00344 helix_turn_helix ASNC type AFA_RS11275 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS11285 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFA_RS11290 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_RS11290 SM00357 Cold shock protein domain AFA_RS11290 SM00955 AFA_RS11290 AFA_RS11355 SM00382 ATPases associated with a variety of cellular activities AFA_RS11435 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS11460 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFA_RS11465 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_RS11485 SM00448 cheY-homologous receiver domain AFA_RS11485 SM00862 Transcriptional regulatory protein, C terminal AFA_RS11490 SM00387 Histidine kinase-like ATPases AFA_RS11500 SM00400 zinc finger AFA_RS11500 SM00493 AFA_RS11500 AFA_RS11500 SM00766 DNA primase DnaG DnaB-binding AFA_RS11515 SM00788 Adenylosuccinate synthetase AFA_RS11525 SM00244 prohibitin homologues AFA_RS11530 SM00244 prohibitin homologues AFA_RS11555 SM00564 beta-propeller repeat AFA_RS11585 SM00562 AFA_RS11585 AFA_RS11620 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFA_RS11630 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS11630 SM00895 AFA_RS11630 AFA_RS11675 SM00434 DNA Topoisomerase IV AFA_RS11680 SM00387 Histidine kinase-like ATPases AFA_RS11680 SM00433 TopoisomeraseII AFA_RS11690 SM00357 Cold shock protein domain AFA_RS11690 SM00382 ATPases associated with a variety of cellular activities AFA_RS11690 SM00959 Rho termination factor, N-terminal domain AFA_RS11695 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFA_RS11720 SM00382 ATPases associated with a variety of cellular activities AFA_RS11720 SM01086 C-terminal, D2-small domain, of ClpB protein AFA_RS11725 SM00100 Cyclic nucleotide-monophosphate binding domain AFA_RS11725 SM00419 helix_turn_helix, cAMP Regulatory protein AFA_RS11800 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFA_RS11800 SM00465 GIY-YIG type nucleases (URI domain) AFA_RS11860 SM00479 AFA_RS11860 AFA_RS11905 SM00893 Electron transfer flavoprotein domain AFA_RS11910 SM00893 Electron transfer flavoprotein domain AFA_RS11930 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFA_RS11955 SM00411 bacterial (prokaryotic) histone like domain AFA_RS11960 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_RS11980 SM00830 Chorismate mutase type II AFA_RS11990 SM00434 DNA Topoisomerase IV AFA_RS12045 SM01060 AFA_RS12045 AFA_RS12060 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS12095 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS12120 SM00528 Domain in histone-like proteins of HNS family AFA_RS12280 SM00470 ParB-like nuclease domain AFA_RS12295 SM00487 DEAD-like helicases superfamily AFA_RS12310 SM00857 Resolvase, N terminal domain AFA_RS12325 SM00382 ATPases associated with a variety of cellular activities AFA_RS12350 SM00357 Cold shock protein domain AFA_RS12420 SM00421 helix_turn_helix, Lux Regulon AFA_RS12420 SM00448 cheY-homologous receiver domain AFA_RS12425 SM00091 PAS domain AFA_RS12425 SM00387 Histidine kinase-like ATPases AFA_RS12425 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS12425 SM00448 cheY-homologous receiver domain AFA_RS12455 SM00387 Histidine kinase-like ATPases AFA_RS12455 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS12460 SM00448 cheY-homologous receiver domain AFA_RS12465 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFA_RS12465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFA_RS12520 SM00938 Nitrogen regulatory protein P-II AFA_RS12545 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS12585 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS12600 SM00382 ATPases associated with a variety of cellular activities AFA_RS12635 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS12635 SM00529 Helix-turn-helix diphteria tox regulatory element AFA_RS12655 SM00528 Domain in histone-like proteins of HNS family AFA_RS12675 SM00829 Enoylreductase AFA_RS12685 SM01329 AFA_RS12685 AFA_RS12705 SM01209 AFA_RS12705 AFA_RS12705 SM01210 AFA_RS12705 AFA_RS12800 SM00382 ATPases associated with a variety of cellular activities AFA_RS12860 SM00981 AFA_RS12860 AFA_RS12885 SM01192 AFA_RS12885 AFA_RS12885 SM01193 AFA_RS12885 AFA_RS12890 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS12925 SM00882 Coenzyme A transferase AFA_RS12930 SM00882 Coenzyme A transferase AFA_RS13000 SM00382 ATPases associated with a variety of cellular activities AFA_RS13060 SM00358 Double-stranded RNA binding motif AFA_RS13060 SM00535 Ribonuclease III family AFA_RS13070 SM00838 Elongation factor G C-terminus AFA_RS13075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFA_RS13100 SM00825 Beta-ketoacyl synthase AFA_RS13110 SM00822 AFA_RS13110 AFA_RS13115 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFA_RS13150 SM00644 AFA_RS13150 AFA_RS13170 SM00363 S4 RNA-binding domain AFA_RS13175 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_RS13195 SM00954 Region found in RelA / SpoT proteins AFA_RS13225 SM00478 endonuclease III AFA_RS13225 SM00525 AFA_RS13225 AFA_RS13240 SM00382 ATPases associated with a variety of cellular activities AFA_RS13245 SM00382 ATPases associated with a variety of cellular activities AFA_RS13280 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFA_RS13280 SM00292 breast cancer carboxy-terminal domain AFA_RS13280 SM00532 Ligase N family AFA_RS13285 SM00771 ZipA, C-terminal domain (FtsZ-binding) AFA_RS13290 SM00968 SMC proteins Flexible Hinge Domain AFA_RS13300 SM00986 Uracil DNA glycosylase superfamily AFA_RS13300 SM00987 UreE urease accessory protein, C-terminal domain AFA_RS13310 SM00448 cheY-homologous receiver domain AFA_RS13310 SM00862 Transcriptional regulatory protein, C terminal AFA_RS13315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_RS13315 SM00387 Histidine kinase-like ATPases AFA_RS13315 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS13330 SM00487 DEAD-like helicases superfamily AFA_RS13330 SM00490 helicase superfamily c-terminal domain AFA_RS13330 SM00982 AFA_RS13330 AFA_RS13330 SM01058 CarD-like/TRCF domain AFA_RS13390 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFA_RS13395 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFA_RS13445 SM00829 Enoylreductase AFA_RS13465 SM00316 Ribosomal protein S1-like RNA-binding domain AFA_RS13465 SM00322 K homology RNA-binding domain AFA_RS13470 SM01387 AFA_RS13470 AFA_RS13535 SM00382 ATPases associated with a variety of cellular activities AFA_RS13545 SM00382 ATPases associated with a variety of cellular activities AFA_RS13545 SM00843 AFA_RS13545 AFA_RS13555 SM00463 Small MutS-related domain AFA_RS13560 SM00028 Tetratricopeptide repeats AFA_RS13575 SM00903 Flavin reductase like domain AFA_RS13580 SM00886 Stress responsive A/B Barrel Domain AFA_RS13600 SM01329 AFA_RS13600 AFA_RS13620 SM00382 ATPases associated with a variety of cellular activities AFA_RS13640 SM00382 ATPases associated with a variety of cellular activities AFA_RS13655 SM00028 Tetratricopeptide repeats AFA_RS13685 SM00858 AFA_RS13685 AFA_RS13720 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS13735 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS13745 SM00271 DnaJ molecular chaperone homology domain AFA_RS13795 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS13795 SM00895 AFA_RS13795 AFA_RS13820 SM00052 Putative diguanylate phosphodiesterase AFA_RS13820 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFA_RS13820 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFA_RS13820 SM00091 PAS domain AFA_RS13820 SM00267 diguanylate cyclase AFA_RS13840 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS13865 SM00344 helix_turn_helix ASNC type AFA_RS13870 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS13885 SM00487 DEAD-like helicases superfamily AFA_RS13885 SM00490 helicase superfamily c-terminal domain AFA_RS13945 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFA_RS13975 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS14010 SM00822 AFA_RS14010 AFA_RS14025 SM00382 ATPases associated with a variety of cellular activities AFA_RS14070 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS14105 SM00422 helix_turn_helix, mercury resistance AFA_RS14130 SM01012 AFA_RS14130 AFA_RS14170 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS14230 SM00052 Putative diguanylate phosphodiesterase AFA_RS14235 SM00857 Resolvase, N terminal domain AFA_RS14245 SM00382 ATPases associated with a variety of cellular activities AFA_RS14300 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_RS14320 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS14355 SM00346 helix_turn_helix isocitrate lyase regulation AFA_RS14360 SM00852 Probable molybdopterin binding domain AFA_RS14375 SM00487 DEAD-like helicases superfamily AFA_RS14375 SM00490 helicase superfamily c-terminal domain AFA_RS14435 SM00798 AICARFT/IMPCHase bienzyme AFA_RS14435 SM00851 MGS-like domain AFA_RS14445 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFA_RS14455 SM00382 ATPases associated with a variety of cellular activities AFA_RS14470 SM00151 SWI complex, BAF60b domains AFA_RS14520 SM00450 Rhodanese Homology Domain AFA_RS14575 SM00382 ATPases associated with a variety of cellular activities AFA_RS14590 SM00387 Histidine kinase-like ATPases AFA_RS14590 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS14595 SM00448 cheY-homologous receiver domain AFA_RS14595 SM00862 Transcriptional regulatory protein, C terminal AFA_RS14680 SM00382 ATPases associated with a variety of cellular activities AFA_RS14725 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS14765 SM01150 AFA_RS14765 AFA_RS14800 SM00267 diguanylate cyclase AFA_RS14815 SM00883 Chaperonin 10 Kd subunit AFA_RS14830 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AFA_RS14845 SM00346 helix_turn_helix isocitrate lyase regulation AFA_RS14880 SM00346 helix_turn_helix isocitrate lyase regulation AFA_RS14885 SM00880 AFA_RS14885 AFA_RS14885 SM01118 AFA_RS14885 AFA_RS14890 SM00382 ATPases associated with a variety of cellular activities AFA_RS14890 SM00962 SRP54-type protein, GTPase domain AFA_RS14890 SM00963 SRP54-type protein, helical bundle domain AFA_RS14945 SM00869 Autotransporter beta-domain AFA_RS14965 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_RS14975 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_RS14985 SM00382 ATPases associated with a variety of cellular activities AFA_RS14990 SM00382 ATPases associated with a variety of cellular activities AFA_RS15010 SM00267 diguanylate cyclase AFA_RS15035 SM00849 Metallo-beta-lactamase superfamily AFA_RS15040 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS15040 SM00866 AFA_RS15040 AFA_RS15045 SM00028 Tetratricopeptide repeats AFA_RS15045 SM01043 Bacterial transcriptional activator domain AFA_RS15050 SM00155 Phospholipase D. Active site motifs. AFA_RS15090 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFA_RS15140 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS15145 SM00382 ATPases associated with a variety of cellular activities AFA_RS15180 SM00479 AFA_RS15180 AFA_RS15205 SM00849 Metallo-beta-lactamase superfamily AFA_RS15210 SM00257 Lysin motif AFA_RS15220 SM00382 ATPases associated with a variety of cellular activities AFA_RS15220 SM00448 cheY-homologous receiver domain AFA_RS15225 SM00387 Histidine kinase-like ATPases AFA_RS15225 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS15240 SM00450 Rhodanese Homology Domain AFA_RS15275 SM00881 CoA binding domain AFA_RS15285 SM00829 Enoylreductase AFA_RS15300 SM00346 helix_turn_helix isocitrate lyase regulation AFA_RS15310 SM00829 Enoylreductase AFA_RS15360 SM00382 ATPases associated with a variety of cellular activities AFA_RS15365 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS15400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFA_RS15420 SM00448 cheY-homologous receiver domain AFA_RS15420 SM00862 Transcriptional regulatory protein, C terminal AFA_RS15425 SM00387 Histidine kinase-like ATPases AFA_RS15425 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS15450 SM01236 AFA_RS15450 AFA_RS15460 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS15490 SM00363 S4 RNA-binding domain AFA_RS15525 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFA_RS15560 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFA_RS15570 SM00831 Cation transporter/ATPase, N-terminus AFA_RS15575 SM00387 Histidine kinase-like ATPases AFA_RS15575 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS15580 SM00421 helix_turn_helix, Lux Regulon AFA_RS15580 SM00448 cheY-homologous receiver domain AFA_RS15590 SM01322 AFA_RS15590 AFA_RS15600 SM00344 helix_turn_helix ASNC type AFA_RS15620 SM00478 endonuclease III AFA_RS15645 SM00878 Biotin carboxylase C-terminal domain AFA_RS15675 SM00955 AFA_RS15675 AFA_RS15705 SM00563 Phosphate acyltransferases AFA_RS15710 SM00732 Likely ribonuclease with RNase H fold. AFA_RS15745 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS15780 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFA_RS15790 SM00862 Transcriptional regulatory protein, C terminal AFA_RS15795 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS15800 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS15820 SM00382 ATPases associated with a variety of cellular activities AFA_RS15835 SM00062 Bacterial periplasmic substrate-binding proteins AFA_RS15840 SM00382 ATPases associated with a variety of cellular activities AFA_RS15850 SM00478 endonuclease III AFA_RS15890 SM00845 GatB domain AFA_RS15930 SM00347 helix_turn_helix multiple antibiotic resistance protein AFA_RS15945 SM00881 CoA binding domain AFA_RS15965 SM00382 ATPases associated with a variety of cellular activities AFA_RS15970 SM00100 Cyclic nucleotide-monophosphate binding domain AFA_RS15970 SM00419 helix_turn_helix, cAMP Regulatory protein AFA_RS16090 SM00421 helix_turn_helix, Lux Regulon AFA_RS16115 SM00873 B3/4 domain AFA_RS16125 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS16130 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS16135 SM01018 B12 binding domain AFA_RS16150 SM00965 Secretin and TonB N terminus short domain AFA_RS16215 SM00978 AFA_RS16215 AFA_RS16225 SM00448 cheY-homologous receiver domain AFA_RS16225 SM00862 Transcriptional regulatory protein, C terminal AFA_RS16230 SM00387 Histidine kinase-like ATPases AFA_RS16230 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS16240 SM00796 Allophanate hydrolase subunit 1 AFA_RS16245 SM00797 Allophanate hydrolase subunit 2 AFA_RS16270 SM00869 Autotransporter beta-domain AFA_RS16275 SM00869 Autotransporter beta-domain AFA_RS16280 SM00869 Autotransporter beta-domain AFA_RS16285 SM00869 Autotransporter beta-domain AFA_RS16295 SM00382 ATPases associated with a variety of cellular activities AFA_RS16300 SM00382 ATPases associated with a variety of cellular activities AFA_RS16325 SM00116 Domain in cystathionine beta-synthase and other proteins. AFA_RS16345 SM00382 ATPases associated with a variety of cellular activities AFA_RS16390 SM00749 bacterial OsmY and nodulation domain AFA_RS16415 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFA_RS16415 SM00245 tail specific protease AFA_RS16425 SM00855 Phosphoglycerate mutase family AFA_RS16430 SM00450 Rhodanese Homology Domain AFA_RS16475 SM00448 cheY-homologous receiver domain AFA_RS16480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFA_RS16480 SM00387 Histidine kinase-like ATPases AFA_RS16480 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS16495 SM00729 Elongator protein 3, MiaB family, Radical SAM AFA_RS16525 SM00382 ATPases associated with a variety of cellular activities AFA_RS16600 SM00382 ATPases associated with a variety of cellular activities AFA_RS16650 SM00905 Dihydroneopterin aldolase AFA_RS16675 SM00937 AFA_RS16675 AFA_RS16690 SM00267 diguanylate cyclase AFA_RS16705 SM00965 Secretin and TonB N terminus short domain AFA_RS16755 SM00387 Histidine kinase-like ATPases AFA_RS16755 SM00388 His Kinase A (phosphoacceptor) domain AFA_RS16760 SM00448 cheY-homologous receiver domain AFA_RS16760 SM00862 Transcriptional regulatory protein, C terminal AFA_RS16780 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS16795 SM00382 ATPases associated with a variety of cellular activities AFA_RS16810 SM00100 Cyclic nucleotide-monophosphate binding domain AFA_RS16810 SM00419 helix_turn_helix, cAMP Regulatory protein AFA_RS16820 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFA_RS16860 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS16865 SM01007 Class II Aldolase and Adducin N-terminal domain AFA_RS16900 SM00450 Rhodanese Homology Domain AFA_RS16905 SM00900 AFA_RS16905 AFA_RS16915 SM00710 Parallel beta-helix repeats AFA_RS16915 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AFA_RS16920 SM00382 ATPases associated with a variety of cellular activities AFA_RS17000 SM00984 UDP binding domain AFA_RS17020 SM00382 ATPases associated with a variety of cellular activities AFA_RS17040 SM00822 AFA_RS17040 AFA_RS17040 SM00823 Phosphopantetheine attachment site AFA_RS17040 SM00825 Beta-ketoacyl synthase AFA_RS17040 SM00826 AFA_RS17040 AFA_RS17040 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFA_RS17040 SM00829 Enoylreductase AFA_RS17040 SM01294 AFA_RS17040 AFA_RS17055 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS17090 SM00382 ATPases associated with a variety of cellular activities AFA_RS17115 SM00382 ATPases associated with a variety of cellular activities AFA_RS17195 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFA_RS17320 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS17320 SM00895 AFA_RS17320 AFA_RS17325 SM00344 helix_turn_helix ASNC type AFA_RS17370 SM00267 diguanylate cyclase AFA_RS17410 SM00822 AFA_RS17410 AFA_RS17435 SM00749 bacterial OsmY and nodulation domain AFA_RS17445 SM00382 ATPases associated with a variety of cellular activities AFA_RS17465 SM00965 Secretin and TonB N terminus short domain AFA_RS17490 SM00344 helix_turn_helix ASNC type AFA_RS17565 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS17600 SM00829 Enoylreductase AFA_RS17605 SM00155 Phospholipase D. Active site motifs. AFA_RS17625 SM00834 Putative regulatory protein AFA_RS17680 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS17680 SM00866 AFA_RS17680 AFA_RS17685 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS17700 SM00422 helix_turn_helix, mercury resistance AFA_RS17755 SM00849 Metallo-beta-lactamase superfamily AFA_RS17815 SM01236 AFA_RS17815 AFA_RS17835 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFA_RS17835 SM00895 AFA_RS17835 AFA_RS17880 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFA_RS17910 SM00052 Putative diguanylate phosphodiesterase AFA_RS17910 SM00267 diguanylate cyclase AFA_RS17935 SM01004 Delta-aminolevulinic acid dehydratase AFA_RS17950 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS17955 SM00903 Flavin reductase like domain AFA_RS17970 SM00662 RNA polymerases D AFA_RS17975 SM00363 S4 RNA-binding domain AFA_RS17975 SM01390 AFA_RS17975 AFA_RS18050 SM01374 AFA_RS18050 AFA_RS18055 SM00052 Putative diguanylate phosphodiesterase AFA_RS18055 SM00267 diguanylate cyclase AFA_RS18065 SM00203 Tachykinin family AFA_RS18065 SM00327 von Willebrand factor (vWF) type A domain AFA_RS18070 SM00421 helix_turn_helix, Lux Regulon AFA_RS18080 SM00382 ATPases associated with a variety of cellular activities AFA_RS18115 SM00382 ATPases associated with a variety of cellular activities AFA_RS18205 SM00382 ATPases associated with a variety of cellular activities AFA_RS18220 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS18240 SM00322 K homology RNA-binding domain AFA_RS18255 SM01382 AFA_RS18255 AFA_RS18255 SM01383 AFA_RS18255 AFA_RS18275 SM00382 ATPases associated with a variety of cellular activities AFA_RS18285 SM01403 AFA_RS18285 AFA_RS18295 SM00838 Elongation factor G C-terminus AFA_RS18295 SM00889 Elongation factor G, domain IV AFA_RS18310 SM00448 cheY-homologous receiver domain AFA_RS18310 SM00862 Transcriptional regulatory protein, C terminal AFA_RS18320 SM00387 Histidine kinase-like ATPases AFA_RS18320 SM01080 AFA_RS18320 AFA_RS18325 SM00342 helix_turn_helix, arabinose operon control protein AFA_RS18340 SM00663 RNA polymerase I subunit A N-terminus AFA_RS18365 SM00649 Ribosomal protein L11/L12 AFA_RS18370 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AFA_RS18370 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFA_RS18405 SM00470 ParB-like nuclease domain AFA_RS18420 SM01228 AFA_RS18420 AFA_RS18435 SM00267 diguanylate cyclase AFA_RS18475 SM00869 Autotransporter beta-domain AFA_RS18500 SM00530 Helix-turn-helix XRE-family like proteins AFA_RS18540 SM00382 ATPases associated with a variety of cellular activities AFA_RS18545 SM00382 ATPases associated with a variety of cellular activities AFA_RS18585 SM01060 AFA_RS18585 AFA_RS18595 SM01234 AFA_RS18595