locus-tag class description ALFP_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix ALFP_RS00005 PF00308 Bacterial dnaA protein ALFP_RS00005 PF11638 DnaA N-terminal domain ALFP_RS00010 PF02767 DNA polymerase III beta subunit, central domain ALFP_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ALFP_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ALFP_RS00015 PF18053 DNA gyrase B subunit insert domain ALFP_RS00015 PF01751 Toprim domain ALFP_RS00015 PF00204 DNA gyrase B ALFP_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus ALFP_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS00020 PF00849 RNA pseudouridylate synthase ALFP_RS00020 PF01479 S4 domain ALFP_RS00035 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS00060 PF13609 Gram-negative porin ALFP_RS00065 PF00701 Dihydrodipicolinate synthetase family ALFP_RS00085 PF01266 FAD dependent oxidoreductase ALFP_RS00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS00095 PF04324 BFD-like [2Fe-2S] binding domain ALFP_RS00100 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS00105 PF03060 Nitronate monooxygenase ALFP_RS00110 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS00115 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_RS00115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS00115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_RS00125 PF02515 CoA-transferase family III ALFP_RS00135 PF02515 CoA-transferase family III ALFP_RS00140 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS00140 PF07729 FCD domain ALFP_RS00145 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS00155 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS00155 PF00175 Oxidoreductase NAD-binding domain ALFP_RS00160 PF00355 Rieske [2Fe-2S] domain ALFP_RS00165 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALFP_RS00165 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ALFP_RS00170 PF03466 LysR substrate binding domain ALFP_RS00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS00180 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS00190 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS00195 PF11862 Domain of unknown function (DUF3382) ALFP_RS00195 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS00200 PF00005 ABC transporter ALFP_RS00205 PF00501 AMP-binding enzyme ALFP_RS00205 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS00215 PF00364 Biotin-requiring enzyme ALFP_RS00215 PF00561 alpha/beta hydrolase fold ALFP_RS00220 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS00220 PF00155 Aminotransferase class I and II ALFP_RS00225 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS00230 PF17645 Arylmalonate decarboxylase ALFP_RS00235 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS00245 PF00892 EamA-like transporter family ALFP_RS00250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS00250 PF03466 LysR substrate binding domain ALFP_RS00260 PF08402 TOBE domain ALFP_RS00260 PF00005 ABC transporter ALFP_RS00270 PF00155 Aminotransferase class I and II ALFP_RS00280 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALFP_RS00280 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALFP_RS00285 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS00310 PF16347 Domain of unknown function (DUF4976) ALFP_RS00310 PF00884 Sulfatase ALFP_RS00320 PF01047 MarR family ALFP_RS00335 PF12802 MarR family ALFP_RS00345 PF01494 FAD binding domain ALFP_RS00350 PF07883 Cupin domain ALFP_RS00355 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_RS00360 PF00795 Carbon-nitrogen hydrolase ALFP_RS00365 PF04199 Putative cyclase ALFP_RS00370 PF00970 Oxidoreductase FAD-binding domain ALFP_RS00370 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS00370 PF00175 Oxidoreductase NAD-binding domain ALFP_RS00375 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_RS00375 PF00355 Rieske [2Fe-2S] domain ALFP_RS00380 PF00866 Ring hydroxylating beta subunit ALFP_RS00385 PF00501 AMP-binding enzyme ALFP_RS00385 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS00410 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS00445 PF01613 Flavin reductase like domain ALFP_RS00455 PF12833 Helix-turn-helix domain ALFP_RS00465 PF00005 ABC transporter ALFP_RS00475 PF02261 Aspartate decarboxylase ALFP_RS00480 PF00593 TonB dependent receptor ALFP_RS00480 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS00490 PF04542 Sigma-70 region 2 ALFP_RS00490 PF08281 Sigma-70, region 4 ALFP_RS00495 PF00005 ABC transporter ALFP_RS00495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_RS00500 PF00005 ABC transporter ALFP_RS00500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_RS00505 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS00505 PF12911 N-terminal TM domain of oligopeptide transport permease C ALFP_RS00510 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS00515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALFP_RS00520 PF00817 impB/mucB/samB family ALFP_RS00520 PF11799 impB/mucB/samB family C-terminal domain ALFP_RS00525 PF00202 Aminotransferase class-III ALFP_RS00535 PF00296 Luciferase-like monooxygenase ALFP_RS00540 PF03358 NADPH-dependent FMN reductase ALFP_RS00560 PF03466 LysR substrate binding domain ALFP_RS00560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS00565 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALFP_RS00565 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALFP_RS00570 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS00580 PF01274 Malate synthase ALFP_RS00585 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ALFP_RS00585 PF01048 Phosphorylase superfamily ALFP_RS00595 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS00600 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS00615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_RS00615 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_RS00615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_RS00620 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS00630 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS00640 PF01751 Toprim domain ALFP_RS00640 PF01131 DNA topoisomerase ALFP_RS00650 PF04361 Protein of unknown function (DUF494) ALFP_RS00655 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALFP_RS00660 PF00289 Biotin carboxylase, N-terminal domain ALFP_RS00660 PF00364 Biotin-requiring enzyme ALFP_RS00660 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALFP_RS00660 PF02785 Biotin carboxylase C-terminal domain ALFP_RS00665 PF01039 Carboxyl transferase domain ALFP_RS00670 PF00108 Thiolase, N-terminal domain ALFP_RS00670 PF02803 Thiolase, C-terminal domain ALFP_RS00675 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ALFP_RS00680 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_RS00680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_RS00680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS00685 PF09278 MerR, DNA binding ALFP_RS00685 PF00376 MerR family regulatory protein ALFP_RS00695 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_RS00700 PF01323 DSBA-like thioredoxin domain ALFP_RS00700 PF00085 Thioredoxin ALFP_RS00710 PF03485 Arginyl tRNA synthetase N terminal domain ALFP_RS00710 PF05746 DALR anticodon binding domain ALFP_RS00710 PF00750 tRNA synthetases class I (R) ALFP_RS00730 PF08502 LeuA allosteric (dimerisation) domain ALFP_RS00730 PF00682 HMGL-like ALFP_RS00740 PF04552 Sigma-54, DNA binding domain ALFP_RS00740 PF04963 Sigma-54 factor, core binding domain ALFP_RS00740 PF00309 Sigma-54 factor, Activator interacting domain (AID) ALFP_RS00745 PF00593 TonB dependent receptor ALFP_RS00745 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS00750 PF00694 Aconitase C-terminal domain ALFP_RS00755 PF00330 Aconitase family (aconitate hydratase) ALFP_RS00760 PF00682 HMGL-like ALFP_RS00765 PF02515 CoA-transferase family III ALFP_RS00770 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS00770 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALFP_RS00780 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS00785 PF00857 Isochorismatase family ALFP_RS00790 PF03466 LysR substrate binding domain ALFP_RS00790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS00800 PF00210 Ferritin-like domain ALFP_RS00810 PF16658 Class II release factor RF3, C-terminal domain ALFP_RS00810 PF00009 Elongation factor Tu GTP binding domain ALFP_RS00810 PF03144 Elongation factor Tu domain 2 ALFP_RS00815 PF01810 LysE type translocator ALFP_RS00820 PF00271 Helicase conserved C-terminal domain ALFP_RS00820 PF00270 DEAD/DEAH box helicase ALFP_RS00830 PF04536 TPM domain ALFP_RS00845 PF12631 MnmE helical domain ALFP_RS00845 PF10396 GTP-binding protein TrmE N-terminus ALFP_RS00845 PF01926 50S ribosome-binding GTPase ALFP_RS00860 PF01425 Amidase ALFP_RS00875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS00875 PF03466 LysR substrate binding domain ALFP_RS00895 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS00905 PF02405 Permease MlaE ALFP_RS00910 PF00005 ABC transporter ALFP_RS00915 PF03886 ABC-type transport auxiliary lipoprotein component ALFP_RS00915 PF02470 MlaD protein ALFP_RS00930 PF13419 Haloacid dehalogenase-like hydrolase ALFP_RS00935 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS00945 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS00955 PF00501 AMP-binding enzyme ALFP_RS00955 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS00960 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS00965 PF07729 FCD domain ALFP_RS00965 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS00970 PF03466 LysR substrate binding domain ALFP_RS00970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS00975 PF01266 FAD dependent oxidoreductase ALFP_RS00985 PF02646 RmuC family ALFP_RS00995 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system ALFP_RS01000 PF00563 EAL domain ALFP_RS01000 PF03707 Bacterial signalling protein N terminal repeat ALFP_RS01000 PF00990 Diguanylate cyclase, GGDEF domain ALFP_RS01005 PF00708 Acylphosphatase ALFP_RS01015 PF16868 NMT1-like family ALFP_RS01025 PF00849 RNA pseudouridylate synthase ALFP_RS01030 PF17763 Glutaminase/Asparaginase C-terminal domain ALFP_RS01030 PF00710 Asparaginase, N-terminal ALFP_RS01035 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS01040 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS01045 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_RS01050 PF00005 ABC transporter ALFP_RS01055 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALFP_RS01055 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALFP_RS01060 PF01168 Alanine racemase, N-terminal domain ALFP_RS01065 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS01075 PF00501 AMP-binding enzyme ALFP_RS01080 PF00005 ABC transporter ALFP_RS01080 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_RS01085 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS01100 PF00005 ABC transporter ALFP_RS01110 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_RS01120 PF00682 HMGL-like ALFP_RS01125 PF02481 DNA recombination-mediator protein A ALFP_RS01125 PF17782 DprA winged helix domain ALFP_RS01130 PF01327 Polypeptide deformylase ALFP_RS01135 PF02911 Formyl transferase, C-terminal domain ALFP_RS01135 PF00551 Formyl transferase ALFP_RS01140 PF00892 EamA-like transporter family ALFP_RS01145 PF01425 Amidase ALFP_RS01155 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS01170 PF07286 Protein of unknown function (DUF1445) ALFP_RS01175 PF03466 LysR substrate binding domain ALFP_RS01175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS01180 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALFP_RS01185 PF00534 Glycosyl transferases group 1 ALFP_RS01185 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ALFP_RS01190 PF00313 'Cold-shock' DNA-binding domain ALFP_RS01195 PF00483 Nucleotidyl transferase ALFP_RS01200 PF03309 Type III pantothenate kinase ALFP_RS01205 PF03099 Biotin/lipoate A/B protein ligase family ALFP_RS01205 PF02237 Biotin protein ligase C terminal domain ALFP_RS01215 PF00768 D-alanyl-D-alanine carboxypeptidase ALFP_RS01215 PF07943 Penicillin-binding protein 5, C-terminal domain ALFP_RS01220 PF01063 Amino-transferase class IV ALFP_RS01225 PF04359 Protein of unknown function (DUF493) ALFP_RS01230 PF03099 Biotin/lipoate A/B protein ligase family ALFP_RS01235 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS01240 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ALFP_RS01240 PF04055 Radical SAM superfamily ALFP_RS01250 PF03167 Uracil DNA glycosylase superfamily ALFP_RS01295 PF01136 Peptidase family U32 ALFP_RS01305 PF02036 SCP-2 sterol transfer family ALFP_RS01330 PF00218 Indole-3-glycerol phosphate synthase ALFP_RS01335 PF02885 Glycosyl transferase family, helical bundle domain ALFP_RS01335 PF00591 Glycosyl transferase family, a/b domain ALFP_RS01340 PF00117 Glutamine amidotransferase class-I ALFP_RS01345 PF00425 chorismate binding enzyme ALFP_RS01345 PF04715 Anthranilate synthase component I, N terminal region ALFP_RS01350 PF13419 Haloacid dehalogenase-like hydrolase ALFP_RS01360 PF00834 Ribulose-phosphate 3 epimerase family ALFP_RS01365 PF04379 ApaG domain ALFP_RS01370 PF06725 3D domain ALFP_RS01370 PF03562 MltA specific insert domain ALFP_RS01375 PF01494 FAD binding domain ALFP_RS01380 PF10411 Disulfide bond isomerase protein N-terminus ALFP_RS01380 PF13098 Thioredoxin-like domain ALFP_RS01390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_RS01390 PF00672 HAMP domain ALFP_RS01390 PF17200 Single Cache domain 2 ALFP_RS01400 PF00106 short chain dehydrogenase ALFP_RS01405 PF00857 Isochorismatase family ALFP_RS01405 PF00550 Phosphopantetheine attachment site ALFP_RS01410 PF00425 chorismate binding enzyme ALFP_RS01420 PF05977 Transmembrane secretion effector ALFP_RS01425 PF00668 Condensation domain ALFP_RS01425 PF00550 Phosphopantetheine attachment site ALFP_RS01425 PF00975 Thioesterase domain ALFP_RS01425 PF00501 AMP-binding enzyme ALFP_RS01430 PF00550 Phosphopantetheine attachment site ALFP_RS01430 PF00857 Isochorismatase family ALFP_RS01435 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS01435 PF00501 AMP-binding enzyme ALFP_RS01445 PF00005 ABC transporter ALFP_RS01450 PF00005 ABC transporter ALFP_RS01450 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_RS01465 PF13458 Periplasmic binding protein ALFP_RS01480 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS01485 PF00005 ABC transporter ALFP_RS01495 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_RS01495 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_RS01515 PF00005 ABC transporter ALFP_RS01520 PF01032 FecCD transport family ALFP_RS01525 PF00756 Putative esterase ALFP_RS01530 PF00271 Helicase conserved C-terminal domain ALFP_RS01530 PF00270 DEAD/DEAH box helicase ALFP_RS01535 PF07690 Major Facilitator Superfamily ALFP_RS01545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS01545 PF03466 LysR substrate binding domain ALFP_RS01555 PF03741 Integral membrane protein TerC family ALFP_RS01555 PF03471 Transporter associated domain ALFP_RS01565 PF02678 Pirin ALFP_RS01565 PF05726 Pirin C-terminal cupin domain ALFP_RS01580 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALFP_RS01580 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALFP_RS01590 PF01063 Amino-transferase class IV ALFP_RS01595 PF03466 LysR substrate binding domain ALFP_RS01595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS01600 PF04235 Protein of unknown function (DUF418) ALFP_RS01610 PF04229 GrpB protein ALFP_RS01615 PF13673 Acetyltransferase (GNAT) domain ALFP_RS01620 PF01636 Phosphotransferase enzyme family ALFP_RS01635 PF01613 Flavin reductase like domain ALFP_RS01640 PF01546 Peptidase family M20/M25/M40 ALFP_RS01645 PF01979 Amidohydrolase family ALFP_RS01650 PF01979 Amidohydrolase family ALFP_RS01655 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS01660 PF00005 ABC transporter ALFP_RS01670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS01670 PF03466 LysR substrate binding domain ALFP_RS01675 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_RS01680 PF00005 ABC transporter ALFP_RS01685 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS01690 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS01695 PF00701 Dihydrodipicolinate synthetase family ALFP_RS01705 PF01548 Transposase ALFP_RS01705 PF02371 Transposase IS116/IS110/IS902 family ALFP_RS01710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALFP_RS01710 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALFP_RS01715 PF00171 Aldehyde dehydrogenase family ALFP_RS01725 PF06433 Methylamine dehydrogenase heavy chain (MADH) ALFP_RS01735 PF00578 AhpC/TSA family ALFP_RS01740 PF02975 Methylamine dehydrogenase, L chain ALFP_RS01750 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ALFP_RS01750 PF12833 Helix-turn-helix domain ALFP_RS01760 PF01208 Uroporphyrinogen decarboxylase (URO-D) ALFP_RS01765 PF00270 DEAD/DEAH box helicase ALFP_RS01765 PF17764 3′ DNA-binding domain (3′BD) ALFP_RS01765 PF18074 Primosomal protein N C-terminal domain ALFP_RS01765 PF00271 Helicase conserved C-terminal domain ALFP_RS01765 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ALFP_RS01770 PF13361 UvrD-like helicase C-terminal domain ALFP_RS01770 PF00580 UvrD/REP helicase N-terminal domain ALFP_RS01780 PF01548 Transposase ALFP_RS01780 PF02371 Transposase IS116/IS110/IS902 family ALFP_RS01785 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS01785 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ALFP_RS01790 PF00310 Glutamine amidotransferases class-II ALFP_RS01790 PF01493 GXGXG motif ALFP_RS01790 PF01645 Conserved region in glutamate synthase ALFP_RS01790 PF04898 Glutamate synthase central domain ALFP_RS01795 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS01805 PF02515 CoA-transferase family III ALFP_RS01810 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ALFP_RS01810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_RS01810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_RS01820 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS01835 PF00593 TonB dependent receptor ALFP_RS01835 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS01840 PF04262 Glutamate-cysteine ligase ALFP_RS01850 PF03472 Autoinducer binding domain ALFP_RS01850 PF00196 Bacterial regulatory proteins, luxR family ALFP_RS01855 PF00561 alpha/beta hydrolase fold ALFP_RS01865 PF07690 Major Facilitator Superfamily ALFP_RS01870 PF03458 UPF0126 domain ALFP_RS01875 PF04172 LrgB-like family ALFP_RS01885 PF01042 Endoribonuclease L-PSP ALFP_RS01890 PF01042 Endoribonuclease L-PSP ALFP_RS01905 PF05658 Head domain of trimeric autotransporter adhesin ALFP_RS01905 PF03895 YadA-like membrane anchor domain ALFP_RS01905 PF05662 Coiled stalk of trimeric autotransporter adhesin ALFP_RS01905 PF13018 Extended Signal Peptide of Type V secretion system ALFP_RS01925 PF01810 LysE type translocator ALFP_RS01935 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_RS01935 PF01411 tRNA synthetases class II (A) ALFP_RS01935 PF02272 DHHA1 domain ALFP_RS01940 PF03466 LysR substrate binding domain ALFP_RS01940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS01950 PF00202 Aminotransferase class-III ALFP_RS01965 PF01923 Cobalamin adenosyltransferase ALFP_RS01980 PF07724 AAA domain (Cdc48 subfamily) ALFP_RS01980 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_RS01985 PF00227 Proteasome subunit ALFP_RS01990 PF01258 Prokaryotic dksA/traR C4-type zinc finger ALFP_RS01995 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALFP_RS01995 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALFP_RS02000 PF01475 Ferric uptake regulator family ALFP_RS02005 PF00005 ABC transporter ALFP_RS02010 PF00950 ABC 3 transport family ALFP_RS02015 PF01297 Zinc-uptake complex component A periplasmic ALFP_RS02020 PF00589 Phage integrase family ALFP_RS02020 PF02899 Phage integrase, N-terminal SAM-like domain ALFP_RS02030 PF01678 Diaminopimelate epimerase ALFP_RS02035 PF03279 Bacterial lipid A biosynthesis acyltransferase ALFP_RS02045 PF02773 S-adenosylmethionine synthetase, C-terminal domain ALFP_RS02045 PF02772 S-adenosylmethionine synthetase, central domain ALFP_RS02045 PF00438 S-adenosylmethionine synthetase, N-terminal domain ALFP_RS02050 PF05221 S-adenosyl-L-homocysteine hydrolase ALFP_RS02050 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ALFP_RS02055 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV ALFP_RS02060 PF02219 Methylenetetrahydrofolate reductase ALFP_RS02070 PF14718 Soluble lytic murein transglycosylase L domain ALFP_RS02070 PF01464 Transglycosylase SLT domain ALFP_RS02075 PF01743 Poly A polymerase head domain ALFP_RS02075 PF12627 Probable RNA and SrmB- binding site of polymerase A ALFP_RS02090 PF01795 MraW methylase family ALFP_RS02095 PF01925 Sulfite exporter TauE/SafE ALFP_RS02100 PF00311 Phosphoenolpyruvate carboxylase ALFP_RS02105 PF00920 Dehydratase family ALFP_RS02110 PF02540 NAD synthase ALFP_RS02120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_RS02120 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_RS02120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS02125 PF02515 CoA-transferase family III ALFP_RS02130 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS02140 PF01594 AI-2E family transporter ALFP_RS02150 PF00589 Phage integrase family ALFP_RS02200 PF18821 Large polyvalent protein-associated domain 7 ALFP_RS02200 PF03432 Relaxase/Mobilisation nuclease domain ALFP_RS02235 PF02661 Fic/DOC family ALFP_RS02240 PF00271 Helicase conserved C-terminal domain ALFP_RS02240 PF00176 SNF2 family N-terminal domain ALFP_RS02260 PF01555 DNA methylase ALFP_RS02260 PF18273 Type III R-M EcoP15I C-terminal domain ALFP_RS02265 PF06250 YhcG PDDEXK nuclease domain ALFP_RS02265 PF17761 DUF1016 N-terminal domain ALFP_RS02270 PF08774 VRR-NUC domain ALFP_RS02270 PF04851 Type III restriction enzyme, res subunit ALFP_RS02280 PF13609 Gram-negative porin ALFP_RS02285 PF00171 Aldehyde dehydrogenase family ALFP_RS02300 PF14525 AraC-binding-like domain ALFP_RS02300 PF12833 Helix-turn-helix domain ALFP_RS02305 PF00440 Bacterial regulatory proteins, tetR family ALFP_RS02305 PF08361 MAATS-type transcriptional repressor, C-terminal region ALFP_RS02320 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS02320 PF00501 AMP-binding enzyme ALFP_RS02330 PF01494 FAD binding domain ALFP_RS02335 PF07690 Major Facilitator Superfamily ALFP_RS02345 PF00248 Aldo/keto reductase family ALFP_RS02350 PF07690 Major Facilitator Superfamily ALFP_RS02355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS02355 PF03466 LysR substrate binding domain ALFP_RS02365 PF05974 Domain of unknown function (DUF892) ALFP_RS02375 PF16347 Domain of unknown function (DUF4976) ALFP_RS02375 PF00884 Sulfatase ALFP_RS02385 PF01047 MarR family ALFP_RS02390 PF00175 Oxidoreductase NAD-binding domain ALFP_RS02390 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS02390 PF00970 Oxidoreductase FAD-binding domain ALFP_RS02400 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS02400 PF00593 TonB dependent receptor ALFP_RS02405 PF01497 Periplasmic binding protein ALFP_RS02410 PF00005 ABC transporter ALFP_RS02415 PF01032 FecCD transport family ALFP_RS02420 PF01032 FecCD transport family ALFP_RS02425 PF00005 ABC transporter ALFP_RS02430 PF04954 Siderophore-interacting protein ALFP_RS02430 PF00664 ABC transporter transmembrane region ALFP_RS02430 PF08021 Siderophore-interacting FAD-binding domain ALFP_RS02430 PF00005 ABC transporter ALFP_RS02435 PF09330 D-lactate dehydrogenase, membrane binding ALFP_RS02435 PF01565 FAD binding domain ALFP_RS02440 PF01070 FMN-dependent dehydrogenase ALFP_RS02445 PF07729 FCD domain ALFP_RS02445 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS02450 PF02652 L-lactate permease ALFP_RS02465 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS02465 PF07702 UTRA domain ALFP_RS02470 PF01037 Lrp/AsnC ligand binding domain ALFP_RS02475 PF00266 Aminotransferase class-V ALFP_RS02480 PF00324 Amino acid permease ALFP_RS02495 PF00578 AhpC/TSA family ALFP_RS02500 PF01970 Tripartite tricarboxylate transporter TctA family ALFP_RS02510 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS02515 PF08220 DeoR-like helix-turn-helix domain ALFP_RS02515 PF00455 DeoR C terminal sensor domain ALFP_RS02520 PF08402 TOBE domain ALFP_RS02520 PF00005 ABC transporter ALFP_RS02525 PF13416 Bacterial extracellular solute-binding protein ALFP_RS02530 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS02535 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS02545 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS02545 PF00593 TonB dependent receptor ALFP_RS02545 PF07660 Secretin and TonB N terminus short domain ALFP_RS02560 PF03741 Integral membrane protein TerC family ALFP_RS02565 PF05698 Bacterial trigger factor protein (TF) C-terminus ALFP_RS02575 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 ALFP_RS02585 PF01966 HD domain ALFP_RS02590 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS02595 PF13378 Enolase C-terminal domain-like ALFP_RS02595 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALFP_RS02600 PF01479 S4 domain ALFP_RS02605 PF07690 Major Facilitator Superfamily ALFP_RS02610 PF00440 Bacterial regulatory proteins, tetR family ALFP_RS02620 PF01425 Amidase ALFP_RS02625 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS02630 PF03466 LysR substrate binding domain ALFP_RS02630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS02655 PF00183 Hsp90 protein ALFP_RS02660 PF00593 TonB dependent receptor ALFP_RS02660 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS02665 PF13640 2OG-Fe(II) oxygenase superfamily ALFP_RS02665 PF18331 PKHD-type hydroxylase C-terminal domain ALFP_RS02670 PF01070 FMN-dependent dehydrogenase ALFP_RS02675 PF01510 N-acetylmuramoyl-L-alanine amidase ALFP_RS02690 PF02881 SRP54-type protein, helical bundle domain ALFP_RS02690 PF00448 SRP54-type protein, GTPase domain ALFP_RS02690 PF02978 Signal peptide binding domain ALFP_RS02695 PF01476 LysM domain ALFP_RS02695 PF04972 BON domain ALFP_RS02700 PF05690 Thiazole biosynthesis protein ThiG ALFP_RS02700 PF02597 ThiS family ALFP_RS02705 PF00561 alpha/beta hydrolase fold ALFP_RS02710 PF02390 Putative methyltransferase ALFP_RS02735 PF00857 Isochorismatase family ALFP_RS02735 PF00550 Phosphopantetheine attachment site ALFP_RS02740 PF12833 Helix-turn-helix domain ALFP_RS02740 PF14525 AraC-binding-like domain ALFP_RS02760 PF03466 LysR substrate binding domain ALFP_RS02760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS02765 PF01699 Sodium/calcium exchanger protein ALFP_RS02770 PF00072 Response regulator receiver domain ALFP_RS02770 PF00990 Diguanylate cyclase, GGDEF domain ALFP_RS02775 PF01323 DSBA-like thioredoxin domain ALFP_RS02780 PF00083 Sugar (and other) transporter ALFP_RS02780 PF07690 Major Facilitator Superfamily ALFP_RS02785 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_RS02800 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALFP_RS02805 PF07883 Cupin domain ALFP_RS02805 PF05899 Protein of unknown function (DUF861) ALFP_RS02810 PF03466 LysR substrate binding domain ALFP_RS02810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS02815 PF01545 Cation efflux family ALFP_RS02815 PF16916 Dimerisation domain of Zinc Transporter ALFP_RS02820 PF09334 tRNA synthetases class I (M) ALFP_RS02820 PF01588 Putative tRNA binding domain ALFP_RS02830 PF10609 NUBPL iron-transfer P-loop NTPase ALFP_RS02845 PF00692 dUTPase ALFP_RS02850 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ALFP_RS02850 PF01276 Orn/Lys/Arg decarboxylase, major domain ALFP_RS02850 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ALFP_RS02860 PF01597 Glycine cleavage H-protein ALFP_RS02865 PF00186 Dihydrofolate reductase ALFP_RS02870 PF00303 Thymidylate synthase ALFP_RS02875 PF02566 OsmC-like protein ALFP_RS02880 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_RS02905 PF03232 Ubiquinone biosynthesis protein COQ7 ALFP_RS02910 PF02887 Pyruvate kinase, alpha/beta domain ALFP_RS02910 PF00224 Pyruvate kinase, barrel domain ALFP_RS02915 PF03928 Haem-degrading ALFP_RS02920 PF13660 Domain of unknown function (DUF4147) ALFP_RS02920 PF05161 MOFRL family ALFP_RS02925 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_RS02925 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_RS02930 PF01261 Xylose isomerase-like TIM barrel ALFP_RS02935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_RS02935 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_RS02935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_RS02940 PF03466 LysR substrate binding domain ALFP_RS02940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS02950 PF00860 Permease family ALFP_RS02955 PF01361 Tautomerase enzyme ALFP_RS02960 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_RS02965 PF04115 Ureidoglycolate lyase ALFP_RS02970 PF01014 Uricase ALFP_RS02970 PF09349 OHCU decarboxylase ALFP_RS02975 PF03466 LysR substrate binding domain ALFP_RS02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS02980 PF00953 Glycosyl transferase family 4 ALFP_RS02985 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALFP_RS02985 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALFP_RS02985 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALFP_RS02990 PF01370 NAD dependent epimerase/dehydratase family ALFP_RS03000 PF00534 Glycosyl transferases group 1 ALFP_RS03000 PF13439 Glycosyltransferase Family 4 ALFP_RS03005 PF00534 Glycosyl transferases group 1 ALFP_RS03005 PF13439 Glycosyltransferase Family 4 ALFP_RS03010 PF00534 Glycosyl transferases group 1 ALFP_RS03010 PF13477 Glycosyl transferase 4-like ALFP_RS03015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALFP_RS03015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALFP_RS03015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALFP_RS03015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALFP_RS03020 PF01565 FAD binding domain ALFP_RS03020 PF02913 FAD linked oxidases, C-terminal domain ALFP_RS03030 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_RS03035 PF04209 homogentisate 1,2-dioxygenase ALFP_RS03045 PF01494 FAD binding domain ALFP_RS03055 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ALFP_RS03055 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ALFP_RS03055 PF06827 Zinc finger found in FPG and IleRS ALFP_RS03065 PF03550 Outer membrane lipoprotein LolB ALFP_RS03070 PF08544 GHMP kinases C terminal ALFP_RS03070 PF00288 GHMP kinases N terminal domain ALFP_RS03080 PF14572 Phosphoribosyl synthetase-associated domain ALFP_RS03080 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ALFP_RS03085 PF01386 Ribosomal L25p family ALFP_RS03085 PF14693 Ribosomal protein TL5, C-terminal domain ALFP_RS03090 PF01195 Peptidyl-tRNA hydrolase ALFP_RS03100 PF01926 50S ribosome-binding GTPase ALFP_RS03100 PF06071 Protein of unknown function (DUF933) ALFP_RS03120 PF00892 EamA-like transporter family ALFP_RS03125 PF13427 Domain of unknown function (DUF4111) ALFP_RS03125 PF01909 Nucleotidyltransferase domain ALFP_RS03130 PF16326 ABC transporter C-terminal domain ALFP_RS03130 PF00005 ABC transporter ALFP_RS03130 PF12848 ABC transporter ALFP_RS03140 PF00657 GDSL-like Lipase/Acylhydrolase ALFP_RS03140 PF03797 Autotransporter beta-domain ALFP_RS03145 PF00484 Carbonic anhydrase ALFP_RS03150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS03150 PF03466 LysR substrate binding domain ALFP_RS03160 PF00005 ABC transporter ALFP_RS03165 PF03379 CcmB protein ALFP_RS03170 PF01578 Cytochrome C assembly protein ALFP_RS03180 PF03100 CcmE ALFP_RS03185 PF01578 Cytochrome C assembly protein ALFP_RS03185 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ALFP_RS03190 PF08534 Redoxin ALFP_RS03195 PF03918 Cytochrome C biogenesis protein ALFP_RS03205 PF02683 Cytochrome C biogenesis protein transmembrane region ALFP_RS03215 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALFP_RS03215 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALFP_RS03215 PF02805 Metal binding domain of Ada ALFP_RS03215 PF12833 Helix-turn-helix domain ALFP_RS03235 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS03240 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS03240 PF11862 Domain of unknown function (DUF3382) ALFP_RS03245 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_RS03245 PF00005 ABC transporter ALFP_RS03250 PF00005 ABC transporter ALFP_RS03255 PF03150 Di-haem cytochrome c peroxidase ALFP_RS03255 PF00034 Cytochrome c ALFP_RS03260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_RS03260 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_RS03260 PF01842 ACT domain ALFP_RS03265 PF02082 Transcriptional regulator ALFP_RS03270 PF01152 Bacterial-like globin ALFP_RS03275 PF00535 Glycosyl transferase family 2 ALFP_RS03305 PF00582 Universal stress protein family ALFP_RS03315 PF02634 FdhD/NarQ family ALFP_RS03320 PF01568 Molydopterin dinucleotide binding domain ALFP_RS03320 PF12838 4Fe-4S dicluster domain ALFP_RS03320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALFP_RS03320 PF00384 Molybdopterin oxidoreductase ALFP_RS03320 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALFP_RS03325 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALFP_RS03325 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALFP_RS03325 PF00037 4Fe-4S binding domain ALFP_RS03335 PF12728 Helix-turn-helix domain ALFP_RS03335 PF12727 PBP superfamily domain ALFP_RS03340 PF04055 Radical SAM superfamily ALFP_RS03340 PF06463 Molybdenum Cofactor Synthesis C ALFP_RS03345 PF12804 MobA-like NTP transferase domain ALFP_RS03350 PF03453 MoeA N-terminal region (domain I and II) ALFP_RS03350 PF00994 Probable molybdopterin binding domain ALFP_RS03350 PF03454 MoeA C-terminal region (domain IV) ALFP_RS03355 PF00994 Probable molybdopterin binding domain ALFP_RS03360 PF02391 MoaE protein ALFP_RS03370 PF01967 MoaC family ALFP_RS03375 PF00196 Bacterial regulatory proteins, luxR family ALFP_RS03375 PF00072 Response regulator receiver domain ALFP_RS03380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS03380 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS03380 PF00989 PAS fold ALFP_RS03385 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS03390 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALFP_RS03395 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS03400 PF08534 Redoxin ALFP_RS03420 PF04055 Radical SAM superfamily ALFP_RS03420 PF06968 Biotin and Thiamin Synthesis associated domain ALFP_RS03435 PF00873 AcrB/AcrD/AcrF family ALFP_RS03440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_RS03500 PF03707 Bacterial signalling protein N terminal repeat ALFP_RS03500 PF00563 EAL domain ALFP_RS03500 PF00990 Diguanylate cyclase, GGDEF domain ALFP_RS03505 PF00795 Carbon-nitrogen hydrolase ALFP_RS03510 PF00571 CBS domain ALFP_RS03510 PF03471 Transporter associated domain ALFP_RS03515 PF02130 Uncharacterized protein family UPF0054 ALFP_RS03520 PF02562 PhoH-like protein ALFP_RS03525 PF00919 Uncharacterized protein family UPF0004 ALFP_RS03525 PF04055 Radical SAM superfamily ALFP_RS03525 PF01938 TRAM domain ALFP_RS03535 PF00557 Metallopeptidase family M24 ALFP_RS03540 PF07549 SecD/SecF GG Motif ALFP_RS03540 PF02355 Protein export membrane protein ALFP_RS03545 PF02355 Protein export membrane protein ALFP_RS03545 PF13721 SecD export protein N-terminal TM region ALFP_RS03545 PF07549 SecD/SecF GG Motif ALFP_RS03550 PF02699 Preprotein translocase subunit ALFP_RS03555 PF01702 Queuine tRNA-ribosyltransferase ALFP_RS03560 PF02547 Queuosine biosynthesis protein ALFP_RS03565 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ALFP_RS03580 PF05957 Bacterial protein of unknown function (DUF883) ALFP_RS03595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS03595 PF03466 LysR substrate binding domain ALFP_RS03605 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS03605 PF00970 Oxidoreductase FAD-binding domain ALFP_RS03610 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family ALFP_RS03625 PF01425 Amidase ALFP_RS03635 PF00083 Sugar (and other) transporter ALFP_RS03635 PF08946 Osmosensory transporter coiled coil ALFP_RS03640 PF03466 LysR substrate binding domain ALFP_RS03640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS03645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_RS03650 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ALFP_RS03655 PF01464 Transglycosylase SLT domain ALFP_RS03660 PF00155 Aminotransferase class I and II ALFP_RS03670 PF00390 Malic enzyme, N-terminal domain ALFP_RS03670 PF01515 Phosphate acetyl/butaryl transferase ALFP_RS03670 PF03949 Malic enzyme, NAD binding domain ALFP_RS03680 PF01337 Barstar (barnase inhibitor) ALFP_RS03685 PF04452 RNA methyltransferase ALFP_RS03690 PF02780 Transketolase, C-terminal domain ALFP_RS03690 PF00456 Transketolase, thiamine diphosphate binding domain ALFP_RS03690 PF02779 Transketolase, pyrimidine binding domain ALFP_RS03695 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALFP_RS03695 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALFP_RS03700 PF00162 Phosphoglycerate kinase ALFP_RS03710 PF00171 Aldehyde dehydrogenase family ALFP_RS03720 PF00994 Probable molybdopterin binding domain ALFP_RS03725 PF01116 Fructose-bisphosphate aldolase class-II ALFP_RS03730 PF01259 SAICAR synthetase ALFP_RS03735 PF00731 AIR carboxylase ALFP_RS03740 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ALFP_RS03740 PF02222 ATP-grasp domain ALFP_RS03745 PF01300 Telomere recombination ALFP_RS03745 PF03481 Putative GTP-binding controlling metal-binding ALFP_RS03750 PF12697 Alpha/beta hydrolase family ALFP_RS03755 PF00171 Aldehyde dehydrogenase family ALFP_RS03755 PF01575 MaoC like domain ALFP_RS03760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_RS03760 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_RS03760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS03765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS03765 PF03466 LysR substrate binding domain ALFP_RS03775 PF00551 Formyl transferase ALFP_RS03780 PF01266 FAD dependent oxidoreductase ALFP_RS03785 PF01613 Flavin reductase like domain ALFP_RS03790 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ALFP_RS03790 PF01243 Pyridoxamine 5'-phosphate oxidase ALFP_RS03800 PF00899 ThiF family ALFP_RS03810 PF00425 chorismate binding enzyme ALFP_RS03810 PF04715 Anthranilate synthase component I, N terminal region ALFP_RS03815 PF17755 UvrA DNA-binding domain ALFP_RS03815 PF00005 ABC transporter ALFP_RS03815 PF17760 UvrA interaction domain ALFP_RS03825 PF00535 Glycosyl transferase family 2 ALFP_RS03835 PF00005 ABC transporter ALFP_RS03835 PF12848 ABC transporter ALFP_RS03855 PF03776 Septum formation topological specificity factor MinE ALFP_RS03860 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALFP_RS03865 PF05209 Septum formation inhibitor MinC, N-terminal domain ALFP_RS03865 PF03775 Septum formation inhibitor MinC, C-terminal domain ALFP_RS03870 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALFP_RS03870 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ALFP_RS03875 PF01654 Cytochrome bd terminal oxidase subunit I ALFP_RS03880 PF02322 Cytochrome bd terminal oxidase subunit II ALFP_RS03885 PF00654 Voltage gated chloride channel ALFP_RS03895 PF16124 RecQ zinc-binding ALFP_RS03895 PF09382 RQC domain ALFP_RS03895 PF00570 HRDC domain ALFP_RS03895 PF00271 Helicase conserved C-terminal domain ALFP_RS03895 PF00270 DEAD/DEAH box helicase ALFP_RS03900 PF03477 ATP cone domain ALFP_RS03900 PF00317 Ribonucleotide reductase, all-alpha domain ALFP_RS03900 PF02867 Ribonucleotide reductase, barrel domain ALFP_RS03905 PF00268 Ribonucleotide reductase, small chain ALFP_RS03910 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS03915 PF16326 ABC transporter C-terminal domain ALFP_RS03915 PF00005 ABC transporter ALFP_RS03915 PF12848 ABC transporter ALFP_RS03925 PF02381 MraZ protein, putative antitoxin-like ALFP_RS03930 PF01795 MraW methylase family ALFP_RS03935 PF04999 Cell division protein FtsL ALFP_RS03940 PF00905 Penicillin binding protein transpeptidase domain ALFP_RS03940 PF03717 Penicillin-binding Protein dimerisation domain ALFP_RS03945 PF01225 Mur ligase family, catalytic domain ALFP_RS03945 PF08245 Mur ligase middle domain ALFP_RS03945 PF02875 Mur ligase family, glutamate ligase domain ALFP_RS03950 PF00953 Glycosyl transferase family 4 ALFP_RS03955 PF08245 Mur ligase middle domain ALFP_RS03955 PF02875 Mur ligase family, glutamate ligase domain ALFP_RS03960 PF01098 Cell cycle protein ALFP_RS03965 PF03033 Glycosyltransferase family 28 N-terminal domain ALFP_RS03965 PF04101 Glycosyltransferase family 28 C-terminal domain ALFP_RS03970 PF08245 Mur ligase middle domain ALFP_RS03970 PF02875 Mur ligase family, glutamate ligase domain ALFP_RS03970 PF01225 Mur ligase family, catalytic domain ALFP_RS03975 PF01820 D-ala D-ala ligase N-terminus ALFP_RS03975 PF07478 D-ala D-ala ligase C-terminus ALFP_RS03980 PF03799 Cell division protein FtsQ ALFP_RS03980 PF08478 POTRA domain, FtsQ-type ALFP_RS03985 PF02491 SHS2 domain inserted in FTSA ALFP_RS03990 PF12327 FtsZ family, C-terminal domain ALFP_RS03990 PF00091 Tubulin/FtsZ family, GTPase domain ALFP_RS03995 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ALFP_RS04005 PF10145 Phage-related minor tail protein ALFP_RS04005 PF01551 Peptidase family M23 ALFP_RS04005 PF01464 Transglycosylase SLT domain ALFP_RS04010 PF07516 SecA Wing and Scaffold domain ALFP_RS04010 PF01043 SecA preprotein cross-linking domain ALFP_RS04010 PF07517 SecA DEAD-like domain ALFP_RS04010 PF02810 SEC-C motif ALFP_RS04020 PF03448 MgtE intracellular N domain ALFP_RS04020 PF01769 Divalent cation transporter ALFP_RS04020 PF00571 CBS domain ALFP_RS04025 PF03061 Thioesterase superfamily ALFP_RS04030 PF01546 Peptidase family M20/M25/M40 ALFP_RS04030 PF07687 Peptidase dimerisation domain ALFP_RS04035 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS04035 PF00501 AMP-binding enzyme ALFP_RS04040 PF00459 Inositol monophosphatase family ALFP_RS04045 PF01266 FAD dependent oxidoreductase ALFP_RS04045 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ALFP_RS04060 PF09383 NIL domain ALFP_RS04060 PF00005 ABC transporter ALFP_RS04065 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS04070 PF03180 NLPA lipoprotein ALFP_RS04075 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_RS04080 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS04085 PF00005 ABC transporter ALFP_RS04095 PF00483 Nucleotidyl transferase ALFP_RS04100 PF01636 Phosphotransferase enzyme family ALFP_RS04105 PF04453 LPS transport system D ALFP_RS04110 PF00639 PPIC-type PPIASE domain ALFP_RS04110 PF09312 SurA N-terminal domain ALFP_RS04115 PF00398 Ribosomal RNA adenine dimethylase ALFP_RS04120 PF07670 Nucleoside recognition ALFP_RS04125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_RS04135 PF01553 Acyltransferase ALFP_RS04145 PF02092 Glycyl-tRNA synthetase beta subunit ALFP_RS04145 PF05746 DALR anticodon binding domain ALFP_RS04150 PF02091 Glycyl-tRNA synthetase alpha subunit ALFP_RS04155 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS04160 PF05681 Fumarate hydratase (Fumerase) ALFP_RS04160 PF05683 Fumarase C-terminus ALFP_RS04165 PF00440 Bacterial regulatory proteins, tetR family ALFP_RS04175 PF07690 Major Facilitator Superfamily ALFP_RS04190 PF03167 Uracil DNA glycosylase superfamily ALFP_RS04195 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ALFP_RS04200 PF01743 Poly A polymerase head domain ALFP_RS04200 PF12626 Polymerase A arginine-rich C-terminus ALFP_RS04200 PF12627 Probable RNA and SrmB- binding site of polymerase A ALFP_RS04210 PF08299 Bacterial dnaA protein helix-turn-helix ALFP_RS04210 PF00308 Bacterial dnaA protein ALFP_RS04215 PF00586 AIR synthase related protein, N-terminal domain ALFP_RS04215 PF02769 AIR synthase related protein, C-terminal domain ALFP_RS04220 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ALFP_RS04230 PF01119 DNA mismatch repair protein, C-terminal domain ALFP_RS04230 PF08676 MutL C terminal dimerisation domain ALFP_RS04235 PF09335 SNARE associated Golgi protein ALFP_RS04240 PF11741 AMIN domain ALFP_RS04240 PF01520 N-acetylmuramoyl-L-alanine amidase ALFP_RS04245 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ALFP_RS04255 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS04260 PF03949 Malic enzyme, NAD binding domain ALFP_RS04260 PF01515 Phosphate acetyl/butaryl transferase ALFP_RS04260 PF00390 Malic enzyme, N-terminal domain ALFP_RS04265 PF03466 LysR substrate binding domain ALFP_RS04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS04270 PF00171 Aldehyde dehydrogenase family ALFP_RS04275 PF00701 Dihydrodipicolinate synthetase family ALFP_RS04285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS04295 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS04320 PF01638 HxlR-like helix-turn-helix ALFP_RS04325 PF13460 NAD(P)H-binding ALFP_RS04335 PF07690 Major Facilitator Superfamily ALFP_RS04340 PF04073 Aminoacyl-tRNA editing domain ALFP_RS04345 PF00589 Phage integrase family ALFP_RS04345 PF02899 Phage integrase, N-terminal SAM-like domain ALFP_RS04355 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS04360 PF03459 TOBE domain ALFP_RS04360 PF00005 ABC transporter ALFP_RS04365 PF03459 TOBE domain ALFP_RS04365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS04375 PF12705 PD-(D/E)XK nuclease superfamily ALFP_RS04375 PF00580 UvrD/REP helicase N-terminal domain ALFP_RS04375 PF13361 UvrD-like helicase C-terminal domain ALFP_RS04385 PF12169 DNA polymerase III subunits gamma and tau domain III ALFP_RS04385 PF12170 DNA polymerase III tau subunit V interacting with alpha ALFP_RS04385 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ALFP_RS04390 PF02575 YbaB/EbfC DNA-binding family ALFP_RS04395 PF02132 RecR protein ALFP_RS04395 PF13662 Toprim domain ALFP_RS04400 PF09084 NMT1/THI5 like ALFP_RS04405 PF00005 ABC transporter ALFP_RS04410 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS04425 PF00593 TonB dependent receptor ALFP_RS04425 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS04435 PF00923 Transaldolase/Fructose-6-phosphate aldolase ALFP_RS04440 PF00117 Glutamine amidotransferase class-I ALFP_RS04440 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ALFP_RS04445 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALFP_RS04445 PF02142 MGS-like domain ALFP_RS04445 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALFP_RS04460 PF00300 Histidine phosphatase superfamily (branch 1) ALFP_RS04465 PF00860 Permease family ALFP_RS04470 PF03449 Transcription elongation factor, N-terminal ALFP_RS04470 PF01272 Transcription elongation factor, GreA/GreB, C-term ALFP_RS04475 PF01985 CRS1 / YhbY (CRM) domain ALFP_RS04480 PF01728 FtsJ-like methyltransferase ALFP_RS04485 PF06480 FtsH Extracellular ALFP_RS04485 PF17862 AAA+ lid domain ALFP_RS04485 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_RS04485 PF01434 Peptidase family M41 ALFP_RS04490 PF00809 Pterin binding enzyme ALFP_RS04495 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALFP_RS04495 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALFP_RS04495 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALFP_RS04495 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALFP_RS04505 PF02541 Ppx/GppA phosphatase family ALFP_RS04510 PF02503 Polyphosphate kinase middle domain ALFP_RS04510 PF13090 Polyphosphate kinase C-terminal domain 2 ALFP_RS04510 PF17941 Polyphosphate kinase C-terminal domain 1 ALFP_RS04510 PF13089 Polyphosphate kinase N-terminal domain ALFP_RS04515 PF12849 PBP superfamily domain ALFP_RS04520 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS04525 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS04530 PF00005 ABC transporter ALFP_RS04535 PF00501 AMP-binding enzyme ALFP_RS04535 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS04550 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS04550 PF00072 Response regulator receiver domain ALFP_RS04555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS04570 PF03466 LysR substrate binding domain ALFP_RS04570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS04585 PF01593 Flavin containing amine oxidoreductase ALFP_RS04590 PF00034 Cytochrome c ALFP_RS04590 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS04595 PF04239 Protein of unknown function (DUF421) ALFP_RS04610 PF00884 Sulfatase ALFP_RS04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS04620 PF03466 LysR substrate binding domain ALFP_RS04640 PF00474 Sodium:solute symporter family ALFP_RS04645 PF08223 PaaX-like protein C-terminal domain ALFP_RS04645 PF07848 PaaX-like protein ALFP_RS04650 PF13396 Phospholipase_D-nuclease N-terminal ALFP_RS04650 PF13091 PLD-like domain ALFP_RS04665 PF01300 Telomere recombination ALFP_RS04670 PF02163 Peptidase family M50 ALFP_RS04675 PF00701 Dihydrodipicolinate synthetase family ALFP_RS04680 PF06804 NlpB/DapX lipoprotein ALFP_RS04700 PF00202 Aminotransferase class-III ALFP_RS04705 PF00155 Aminotransferase class I and II ALFP_RS04710 PF00067 Cytochrome P450 ALFP_RS04720 PF03594 Benzoate membrane transport protein ALFP_RS04725 PF08007 Cupin superfamily protein ALFP_RS04730 PF00488 MutS domain V ALFP_RS04730 PF05192 MutS domain III ALFP_RS04730 PF05188 MutS domain II ALFP_RS04730 PF01624 MutS domain I ALFP_RS04730 PF05190 MutS family domain IV ALFP_RS04740 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS04740 PF00593 TonB dependent receptor ALFP_RS04745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_RS04750 PF00005 ABC transporter ALFP_RS04750 PF12704 MacB-like periplasmic core domain ALFP_RS04750 PF02687 FtsX-like permease family ALFP_RS04755 PF02321 Outer membrane efflux protein ALFP_RS04760 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ALFP_RS04765 PF00005 ABC transporter ALFP_RS04765 PF00664 ABC transporter transmembrane region ALFP_RS04775 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS04780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS04780 PF03466 LysR substrate binding domain ALFP_RS04785 PF00296 Luciferase-like monooxygenase ALFP_RS04795 PF00924 Mechanosensitive ion channel ALFP_RS04795 PF05552 Conserved TM helix ALFP_RS04800 PF03466 LysR substrate binding domain ALFP_RS04800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS04805 PF00107 Zinc-binding dehydrogenase ALFP_RS04805 PF16197 Ketoacyl-synthetase C-terminal extension ALFP_RS04805 PF00109 Beta-ketoacyl synthase, N-terminal domain ALFP_RS04805 PF14765 Polyketide synthase dehydratase ALFP_RS04805 PF08659 KR domain ALFP_RS04805 PF00550 Phosphopantetheine attachment site ALFP_RS04805 PF00698 Acyl transferase domain ALFP_RS04805 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_RS04805 PF02801 Beta-ketoacyl synthase, C-terminal domain ALFP_RS04810 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ALFP_RS04825 PF01039 Carboxyl transferase domain ALFP_RS04830 PF06857 Malonate decarboxylase delta subunit (MdcD) ALFP_RS04835 PF16957 Malonate decarboxylase, alpha subunit, transporter ALFP_RS04840 PF01425 Amidase ALFP_RS04850 PF00588 SpoU rRNA Methylase family ALFP_RS04855 PF00459 Inositol monophosphatase family ALFP_RS04860 PF03471 Transporter associated domain ALFP_RS04860 PF03741 Integral membrane protein TerC family ALFP_RS04865 PF02673 Bacitracin resistance protein BacA ALFP_RS04875 PF00149 Calcineurin-like phosphoesterase ALFP_RS04880 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALFP_RS04890 PF09190 DALR domain ALFP_RS04890 PF01406 tRNA synthetases class I (C) catalytic domain ALFP_RS04900 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ALFP_RS04905 PF09179 TilS substrate binding domain ALFP_RS04905 PF01171 PP-loop family ALFP_RS04910 PF13840 ACT domain ALFP_RS04910 PF01842 ACT domain ALFP_RS04910 PF00696 Amino acid kinase family ALFP_RS04925 PF01145 SPFH domain / Band 7 family ALFP_RS04935 PF02311 AraC-like ligand binding domain ALFP_RS04935 PF12833 Helix-turn-helix domain ALFP_RS04940 PF00795 Carbon-nitrogen hydrolase ALFP_RS04950 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_RS04960 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS04965 PF08402 TOBE domain ALFP_RS04965 PF00005 ABC transporter ALFP_RS04970 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ALFP_RS04970 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ALFP_RS04975 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ALFP_RS04980 PF02233 NAD(P) transhydrogenase beta subunit ALFP_RS05010 PF01070 FMN-dependent dehydrogenase ALFP_RS05015 PF13409 Glutathione S-transferase, N-terminal domain ALFP_RS05020 PF03358 NADPH-dependent FMN reductase ALFP_RS05035 PF02245 Methylpurine-DNA glycosylase (MPG) ALFP_RS05040 PF00962 Adenosine/AMP deaminase ALFP_RS05045 PF04241 Protein of unknown function (DUF423) ALFP_RS05050 PF01544 CorA-like Mg2+ transporter protein ALFP_RS05055 PF18158 Adaptive response protein AidB N-terminal domain ALFP_RS05055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS05055 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_RS05070 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS05075 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS05075 PF12911 N-terminal TM domain of oligopeptide transport permease C ALFP_RS05080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_RS05080 PF00005 ABC transporter ALFP_RS05095 PF00171 Aldehyde dehydrogenase family ALFP_RS05100 PF00465 Iron-containing alcohol dehydrogenase ALFP_RS05105 PF09285 Elongation factor P, C-terminal ALFP_RS05105 PF01132 Elongation factor P (EF-P) OB domain ALFP_RS05105 PF08207 Elongation factor P (EF-P) KOW-like domain ALFP_RS05120 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS05120 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS05130 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS05135 PF06434 Aconitate hydratase 2 N-terminus ALFP_RS05135 PF00330 Aconitase family (aconitate hydratase) ALFP_RS05135 PF11791 Aconitate B N-terminal domain ALFP_RS05150 PF00285 Citrate synthase, C-terminal domain ALFP_RS05160 PF02954 Bacterial regulatory protein, Fis family ALFP_RS05160 PF00158 Sigma-54 interaction domain ALFP_RS05160 PF06506 Propionate catabolism activator ALFP_RS05165 PF07690 Major Facilitator Superfamily ALFP_RS05175 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ALFP_RS05175 PF00056 lactate/malate dehydrogenase, NAD binding domain ALFP_RS05180 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS05180 PF07702 UTRA domain ALFP_RS05185 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALFP_RS05195 PF02910 Fumarate reductase flavoprotein C-term ALFP_RS05195 PF00890 FAD binding domain ALFP_RS05200 PF13085 2Fe-2S iron-sulfur cluster binding domain ALFP_RS05205 PF03937 Flavinator of succinate dehydrogenase ALFP_RS05210 PF00285 Citrate synthase, C-terminal domain ALFP_RS05215 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS05215 PF07729 FCD domain ALFP_RS05220 PF02652 L-lactate permease ALFP_RS05225 PF01515 Phosphate acetyl/butaryl transferase ALFP_RS05225 PF03949 Malic enzyme, NAD binding domain ALFP_RS05225 PF00390 Malic enzyme, N-terminal domain ALFP_RS05235 PF16870 2-oxoglutarate dehydrogenase C-terminal ALFP_RS05235 PF00676 Dehydrogenase E1 component ALFP_RS05235 PF16078 2-oxoglutarate dehydrogenase N-terminus ALFP_RS05235 PF02779 Transketolase, pyrimidine binding domain ALFP_RS05240 PF02817 e3 binding domain ALFP_RS05240 PF00364 Biotin-requiring enzyme ALFP_RS05240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALFP_RS05245 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS05245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALFP_RS05250 PF03969 AFG1-like ATPase ALFP_RS05255 PF00579 tRNA synthetases class I (W and Y) ALFP_RS05260 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_RS05270 PF09371 Tex-like protein N-terminal domain ALFP_RS05270 PF00575 S1 RNA binding domain ALFP_RS05270 PF16921 Tex protein YqgF-like domain ALFP_RS05270 PF17674 HHH domain ALFP_RS05275 PF04851 Type III restriction enzyme, res subunit ALFP_RS05275 PF13307 Helicase C-terminal domain ALFP_RS05285 PF01638 HxlR-like helix-turn-helix ALFP_RS05295 PF06249 Ethanolamine utilisation protein EutQ ALFP_RS05300 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ALFP_RS05300 PF01266 FAD dependent oxidoreductase ALFP_RS05305 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS05315 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALFP_RS05315 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS05320 PF08361 MAATS-type transcriptional repressor, C-terminal region ALFP_RS05320 PF00440 Bacterial regulatory proteins, tetR family ALFP_RS05325 PF13525 Outer membrane lipoprotein ALFP_RS05330 PF00849 RNA pseudouridylate synthase ALFP_RS05330 PF01479 S4 domain ALFP_RS05335 PF02578 Multi-copper polyphenol oxidoreductase laccase ALFP_RS05340 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ALFP_RS05345 PF00106 short chain dehydrogenase ALFP_RS05350 PF07879 PHB/PHA accumulation regulator DNA-binding domain ALFP_RS05350 PF05233 PHB accumulation regulatory domain ALFP_RS05380 PF04079 Segregation and condensation complex subunit ScpB ALFP_RS05385 PF01479 S4 domain ALFP_RS05385 PF00849 RNA pseudouridylate synthase ALFP_RS05390 PF02576 RimP N-terminal domain ALFP_RS05390 PF17384 RimP C-terminal SH3 domain ALFP_RS05395 PF13184 NusA-like KH domain ALFP_RS05395 PF08529 NusA N-terminal domain ALFP_RS05400 PF08364 Bacterial translation initiation factor IF-2 associated region ALFP_RS05400 PF00009 Elongation factor Tu GTP binding domain ALFP_RS05400 PF11987 Translation-initiation factor 2 ALFP_RS05400 PF04760 Translation initiation factor IF-2, N-terminal region ALFP_RS05405 PF02033 Ribosome-binding factor A ALFP_RS05410 PF01509 TruB family pseudouridylate synthase (N terminal domain) ALFP_RS05410 PF16198 tRNA pseudouridylate synthase B C-terminal domain ALFP_RS05415 PF03144 Elongation factor Tu domain 2 ALFP_RS05415 PF00009 Elongation factor Tu GTP binding domain ALFP_RS05415 PF00679 Elongation factor G C-terminus ALFP_RS05420 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS05430 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS05435 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS05440 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_RS05445 PF03641 Possible lysine decarboxylase ALFP_RS05450 PF00476 DNA polymerase family A ALFP_RS05450 PF01367 5'-3' exonuclease, C-terminal SAM fold ALFP_RS05450 PF01612 3'-5' exonuclease ALFP_RS05450 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ALFP_RS05455 PF02690 Na+/Pi-cotransporter ALFP_RS05465 PF00456 Transketolase, thiamine diphosphate binding domain ALFP_RS05465 PF17831 Pyruvate dehydrogenase E1 component middle domain ALFP_RS05475 PF00583 Acetyltransferase (GNAT) family ALFP_RS05480 PF01435 Peptidase family M48 ALFP_RS05490 PF00581 Rhodanese-like domain ALFP_RS05495 PF02609 Exonuclease VII small subunit ALFP_RS05500 PF00348 Polyprenyl synthetase ALFP_RS05505 PF02780 Transketolase, C-terminal domain ALFP_RS05505 PF02779 Transketolase, pyrimidine binding domain ALFP_RS05505 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ALFP_RS05510 PF02649 Type I GTP cyclohydrolase folE2 ALFP_RS05515 PF01250 Ribosomal protein S6 ALFP_RS05525 PF01084 Ribosomal protein S18 ALFP_RS05530 PF03948 Ribosomal protein L9, C-terminal domain ALFP_RS05530 PF01281 Ribosomal protein L9, N-terminal domain ALFP_RS05535 PF03796 DnaB-like helicase C terminal domain ALFP_RS05535 PF00772 DnaB-like helicase N terminal domain ALFP_RS05540 PF13593 SBF-like CPA transporter family (DUF4137) ALFP_RS05545 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ALFP_RS05550 PF13638 PIN domain ALFP_RS05550 PF02562 PhoH-like protein ALFP_RS05555 PF00578 AhpC/TSA family ALFP_RS05560 PF04430 Protein of unknown function (DUF498/DUF598) ALFP_RS05565 PF00155 Aminotransferase class I and II ALFP_RS05570 PF01842 ACT domain ALFP_RS05570 PF00742 Homoserine dehydrogenase ALFP_RS05570 PF03447 Homoserine dehydrogenase, NAD binding domain ALFP_RS05575 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_RS05575 PF14821 Threonine synthase N terminus ALFP_RS05580 PF13302 Acetyltransferase (GNAT) domain ALFP_RS05585 PF01593 Flavin containing amine oxidoreductase ALFP_RS05600 PF01168 Alanine racemase, N-terminal domain ALFP_RS05600 PF00842 Alanine racemase, C-terminal domain ALFP_RS05610 PF18073 Rubredoxin metal binding domain ALFP_RS05625 PF13416 Bacterial extracellular solute-binding protein ALFP_RS05630 PF08402 TOBE domain ALFP_RS05630 PF00005 ABC transporter ALFP_RS05635 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS05640 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS05645 PF03960 ArsC family ALFP_RS05650 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ALFP_RS05655 PF01895 PhoU domain ALFP_RS05660 PF00563 EAL domain ALFP_RS05660 PF01590 GAF domain ALFP_RS05660 PF00990 Diguanylate cyclase, GGDEF domain ALFP_RS05660 PF00360 Phytochrome region ALFP_RS05665 PF00916 Sulfate permease family ALFP_RS05665 PF01740 STAS domain ALFP_RS05670 PF04362 Bacterial Fe(2+) trafficking ALFP_RS05675 PF00583 Acetyltransferase (GNAT) family ALFP_RS05675 PF00696 Amino acid kinase family ALFP_RS05680 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ALFP_RS05680 PF11898 Domain of unknown function (DUF3418) ALFP_RS05680 PF04408 Helicase associated domain (HA2) ALFP_RS05680 PF00271 Helicase conserved C-terminal domain ALFP_RS05680 PF00270 DEAD/DEAH box helicase ALFP_RS05685 PF01336 OB-fold nucleic acid binding domain ALFP_RS05685 PF02811 PHP domain ALFP_RS05685 PF14579 Helix-hairpin-helix motif ALFP_RS05685 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALFP_RS05685 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALFP_RS05690 PF13439 Glycosyltransferase Family 4 ALFP_RS05690 PF00534 Glycosyl transferases group 1 ALFP_RS05695 PF01522 Polysaccharide deacetylase ALFP_RS05700 PF00535 Glycosyl transferase family 2 ALFP_RS05710 PF13439 Glycosyltransferase Family 4 ALFP_RS05710 PF00534 Glycosyl transferases group 1 ALFP_RS05720 PF03692 Putative zinc- or iron-chelating domain ALFP_RS05735 PF00005 ABC transporter ALFP_RS05735 PF00664 ABC transporter transmembrane region ALFP_RS05750 PF10150 Ribonuclease E/G family ALFP_RS05750 PF00575 S1 RNA binding domain ALFP_RS05790 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS05790 PF07729 FCD domain ALFP_RS05795 PF02913 FAD linked oxidases, C-terminal domain ALFP_RS05795 PF01565 FAD binding domain ALFP_RS05800 PF01565 FAD binding domain ALFP_RS05805 PF13183 4Fe-4S dicluster domain ALFP_RS05805 PF02754 Cysteine-rich domain ALFP_RS05830 PF01594 AI-2E family transporter ALFP_RS05835 PF02690 Na+/Pi-cotransporter ALFP_RS05850 PF13609 Gram-negative porin ALFP_RS05860 PF00892 EamA-like transporter family ALFP_RS05870 PF03466 LysR substrate binding domain ALFP_RS05870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS05875 PF03601 Conserved hypothetical protein 698 ALFP_RS05880 PF04247 Invasion gene expression up-regulator, SirB ALFP_RS05885 PF00753 Metallo-beta-lactamase superfamily ALFP_RS05895 PF04143 Sulphur transport ALFP_RS05905 PF13411 MerR HTH family regulatory protein ALFP_RS05910 PF00403 Heavy-metal-associated domain ALFP_RS05915 PF00916 Sulfate permease family ALFP_RS05915 PF01740 STAS domain ALFP_RS05920 PF03781 Sulfatase-modifying factor enzyme 1 ALFP_RS05925 PF00884 Sulfatase ALFP_RS05930 PF05154 TM2 domain ALFP_RS05935 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ALFP_RS05935 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ALFP_RS05940 PF01266 FAD dependent oxidoreductase ALFP_RS05940 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ALFP_RS05945 PF00877 NlpC/P60 family ALFP_RS05950 PF05247 Flagellar transcriptional activator (FlhD) ALFP_RS05955 PF05280 Flagellar transcriptional activator (FlhC) ALFP_RS05960 PF01618 MotA/TolQ/ExbB proton channel family ALFP_RS05965 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALFP_RS05965 PF00691 OmpA family ALFP_RS05970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS05970 PF01584 CheW-like domain ALFP_RS05970 PF02895 Signal transducing histidine kinase, homodimeric domain ALFP_RS05970 PF09078 CheY binding ALFP_RS05970 PF01627 Hpt domain ALFP_RS05975 PF01584 CheW-like domain ALFP_RS05980 PF00672 HAMP domain ALFP_RS05980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_RS05980 PF02203 Tar ligand binding domain homologue ALFP_RS05985 PF03705 CheR methyltransferase, all-alpha domain ALFP_RS05985 PF01739 CheR methyltransferase, SAM binding domain ALFP_RS05990 PF00072 Response regulator receiver domain ALFP_RS05990 PF01339 CheB methylesterase ALFP_RS05995 PF00072 Response regulator receiver domain ALFP_RS06000 PF04344 Chemotaxis phosphatase, CheZ ALFP_RS06005 PF01312 FlhB HrpN YscU SpaS Family ALFP_RS06010 PF00771 FHIPEP family ALFP_RS06015 PF00448 SRP54-type protein, GTPase domain ALFP_RS06020 PF07804 HipA-like C-terminal domain ALFP_RS06020 PF13657 HipA N-terminal domain ALFP_RS06035 PF04316 Anti-sigma-28 factor, FlgM ALFP_RS06045 PF00460 Flagella basal body rod protein ALFP_RS06050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_RS06050 PF00460 Flagella basal body rod protein ALFP_RS06055 PF03963 Flagellar hook capping protein - N-terminal region ALFP_RS06055 PF13860 FlgD Ig-like domain ALFP_RS06055 PF13861 FlgD Tudor-like domain ALFP_RS06060 PF00460 Flagella basal body rod protein ALFP_RS06060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_RS06060 PF07559 Flagellar basal body protein FlaE ALFP_RS06065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_RS06065 PF00460 Flagella basal body rod protein ALFP_RS06070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_RS06070 PF00460 Flagella basal body rod protein ALFP_RS06075 PF02107 Flagellar L-ring protein ALFP_RS06080 PF02119 Flagellar P-ring protein ALFP_RS06085 PF10135 Rod binding protein ALFP_RS06085 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ALFP_RS06090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALFP_RS06090 PF00460 Flagella basal body rod protein ALFP_RS06095 PF00669 Bacterial flagellin N-terminal helical region ALFP_RS06100 PF00672 HAMP domain ALFP_RS06100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_RS06100 PF02203 Tar ligand binding domain homologue ALFP_RS06110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_RS06110 PF00672 HAMP domain ALFP_RS06110 PF02203 Tar ligand binding domain homologue ALFP_RS06120 PF00929 Exonuclease ALFP_RS06120 PF14579 Helix-hairpin-helix motif ALFP_RS06120 PF02811 PHP domain ALFP_RS06120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALFP_RS06120 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALFP_RS06125 PF01311 Bacterial export proteins, family 1 ALFP_RS06130 PF01313 Bacterial export proteins, family 3 ALFP_RS06135 PF00813 FliP family ALFP_RS06140 PF04347 Flagellar biosynthesis protein, FliO ALFP_RS06145 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALFP_RS06145 PF16973 Flagellar motor switch protein FliN N-terminal ALFP_RS06150 PF02154 Flagellar motor switch protein FliM ALFP_RS06150 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALFP_RS06155 PF03748 Flagellar basal body-associated protein FliL ALFP_RS06170 PF18269 T3SS EscN ATPase C-terminal domain ALFP_RS06170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_RS06180 PF14842 FliG N-terminal domain ALFP_RS06180 PF01706 FliG C-terminal domain ALFP_RS06180 PF14841 FliG middle domain ALFP_RS06185 PF01514 Secretory protein of YscJ/FliF family ALFP_RS06185 PF08345 Flagellar M-ring protein C-terminal ALFP_RS06190 PF02049 Flagellar hook-basal body complex protein FliE ALFP_RS06195 PF01312 FlhB HrpN YscU SpaS Family ALFP_RS06210 PF02561 Flagellar protein FliS ALFP_RS06215 PF07196 Flagellin hook IN motif ALFP_RS06215 PF07195 Flagellar hook-associated protein 2 C-terminus ALFP_RS06215 PF02465 Flagellar hook-associated protein 2 N-terminus ALFP_RS06220 PF03646 FlaG protein ALFP_RS06225 PF04545 Sigma-70, region 4 ALFP_RS06225 PF04542 Sigma-70 region 2 ALFP_RS06225 PF04539 Sigma-70 region 3 ALFP_RS06235 PF08884 Flagellin D3 domain ALFP_RS06235 PF00700 Bacterial flagellin C-terminal helical region ALFP_RS06235 PF00669 Bacterial flagellin N-terminal helical region ALFP_RS06270 PF00005 ABC transporter ALFP_RS06280 PF03781 Sulfatase-modifying factor enzyme 1 ALFP_RS06300 PF04286 Protein of unknown function (DUF445) ALFP_RS06305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_RS06305 PF08447 PAS fold ALFP_RS06310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_RS06310 PF08447 PAS fold ALFP_RS06320 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALFP_RS06320 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALFP_RS06325 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS06350 PF00589 Phage integrase family ALFP_RS06360 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS06365 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS06370 PF00884 Sulfatase ALFP_RS06375 PF03466 LysR substrate binding domain ALFP_RS06375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS06380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_RS06385 PF00873 AcrB/AcrD/AcrF family ALFP_RS06390 PF02321 Outer membrane efflux protein ALFP_RS06395 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ALFP_RS06400 PF00005 ABC transporter ALFP_RS06405 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS06415 PF03466 LysR substrate binding domain ALFP_RS06415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS06425 PF01425 Amidase ALFP_RS06440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS06445 PF08274 PhnA Zinc-Ribbon ALFP_RS06445 PF03831 PhnA domain ALFP_RS06455 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS06465 PF00324 Amino acid permease ALFP_RS06485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS06485 PF03466 LysR substrate binding domain ALFP_RS06490 PF07007 Lysozyme inhibitor LprI ALFP_RS06495 PF00230 Major intrinsic protein ALFP_RS06530 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS06530 PF10518 TAT (twin-arginine translocation) pathway signal sequence ALFP_RS06530 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding ALFP_RS06555 PF00313 'Cold-shock' DNA-binding domain ALFP_RS06560 PF08521 Two-component sensor kinase N-terminal ALFP_RS06560 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS06560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS06565 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS06565 PF00072 Response regulator receiver domain ALFP_RS06570 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_RS06580 PF00034 Cytochrome c ALFP_RS06585 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS06590 PF02371 Transposase IS116/IS110/IS902 family ALFP_RS06590 PF01548 Transposase ALFP_RS06600 PF00149 Calcineurin-like phosphoesterase ALFP_RS06605 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS06605 PF00593 TonB dependent receptor ALFP_RS06630 PF01914 MarC family integral membrane protein ALFP_RS06640 PF00999 Sodium/hydrogen exchanger family ALFP_RS06650 PF00529 HlyD membrane-fusion protein of T1SS ALFP_RS06650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_RS06655 PF12805 FUSC-like inner membrane protein yccS ALFP_RS06660 PF00860 Permease family ALFP_RS06680 PF02630 SCO1/SenC ALFP_RS06690 PF01645 Conserved region in glutamate synthase ALFP_RS06700 PF12802 MarR family ALFP_RS06705 PF02464 Competence-damaged protein ALFP_RS06705 PF00994 Probable molybdopterin binding domain ALFP_RS06710 PF00330 Aconitase family (aconitate hydratase) ALFP_RS06710 PF00694 Aconitase C-terminal domain ALFP_RS06720 PF04303 PrpF protein ALFP_RS06725 PF12833 Helix-turn-helix domain ALFP_RS06735 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_RS06735 PF00355 Rieske [2Fe-2S] domain ALFP_RS06740 PF00866 Ring hydroxylating beta subunit ALFP_RS06755 PF01593 Flavin containing amine oxidoreductase ALFP_RS06760 PF12794 Mechanosensitive ion channel inner membrane domain 1 ALFP_RS06760 PF12795 Mechanosensitive ion channel porin domain ALFP_RS06760 PF00924 Mechanosensitive ion channel ALFP_RS06765 PF12794 Mechanosensitive ion channel inner membrane domain 1 ALFP_RS06765 PF12795 Mechanosensitive ion channel porin domain ALFP_RS06765 PF00924 Mechanosensitive ion channel ALFP_RS06770 PF08946 Osmosensory transporter coiled coil ALFP_RS06770 PF00083 Sugar (and other) transporter ALFP_RS06785 PF01381 Helix-turn-helix ALFP_RS06790 PF00072 Response regulator receiver domain ALFP_RS06795 PF01627 Hpt domain ALFP_RS06795 PF00072 Response regulator receiver domain ALFP_RS06795 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS06795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS06800 PF00571 CBS domain ALFP_RS06800 PF01769 Divalent cation transporter ALFP_RS06800 PF03448 MgtE intracellular N domain ALFP_RS06810 PF06965 Na+/H+ antiporter 1 ALFP_RS06815 PF02580 D-Tyr-tRNA(Tyr) deacylase ALFP_RS06820 PF00893 Small Multidrug Resistance protein ALFP_RS06830 PF00583 Acetyltransferase (GNAT) family ALFP_RS06840 PF01435 Peptidase family M48 ALFP_RS06845 PF07690 Major Facilitator Superfamily ALFP_RS06910 PF00990 Diguanylate cyclase, GGDEF domain ALFP_RS06925 PF01037 Lrp/AsnC ligand binding domain ALFP_RS06925 PF13404 AsnC-type helix-turn-helix domain ALFP_RS06930 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_RS06940 PF00293 NUDIX domain ALFP_RS06945 PF04304 Protein of unknown function (DUF454) ALFP_RS06955 PF00764 Arginosuccinate synthase ALFP_RS06960 PF00149 Calcineurin-like phosphoesterase ALFP_RS06965 PF03459 TOBE domain ALFP_RS06965 PF00005 ABC transporter ALFP_RS06970 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS06980 PF01547 Bacterial extracellular solute-binding protein ALFP_RS06985 PF00356 Bacterial regulatory proteins, lacI family ALFP_RS06995 PF03814 Potassium-transporting ATPase A subunit ALFP_RS07000 PF02669 K+-transporting ATPase, c chain ALFP_RS07010 PF13492 GAF domain ALFP_RS07010 PF13493 Domain of unknown function (DUF4118) ALFP_RS07010 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS07010 PF02702 Osmosensitive K+ channel His kinase sensor domain ALFP_RS07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS07015 PF00072 Response regulator receiver domain ALFP_RS07015 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS07020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALFP_RS07020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALFP_RS07030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_RS07030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_RS07035 PF01649 Ribosomal protein S20 ALFP_RS07040 PF03023 Lipid II flippase MurJ ALFP_RS07045 PF00106 short chain dehydrogenase ALFP_RS07050 PF05191 Adenylate kinase, active site lid ALFP_RS07055 PF02348 Cytidylyltransferase ALFP_RS07060 PF03966 Trm112p-like protein ALFP_RS07065 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ALFP_RS07070 PF02472 Biopolymer transport protein ExbD/TolR ALFP_RS07075 PF01618 MotA/TolQ/ExbB proton channel family ALFP_RS07080 PF13742 OB-fold nucleic acid binding domain ALFP_RS07080 PF02601 Exonuclease VII, large subunit ALFP_RS07085 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALFP_RS07085 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALFP_RS07090 PF00210 Ferritin-like domain ALFP_RS07095 PF00108 Thiolase, N-terminal domain ALFP_RS07095 PF02803 Thiolase, C-terminal domain ALFP_RS07105 PF00313 'Cold-shock' DNA-binding domain ALFP_RS07110 PF02617 ATP-dependent Clp protease adaptor protein ClpS ALFP_RS07115 PF10431 C-terminal, D2-small domain, of ClpB protein ALFP_RS07115 PF02861 Clp amino terminal domain, pathogenicity island component ALFP_RS07115 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_RS07115 PF07724 AAA domain (Cdc48 subfamily) ALFP_RS07115 PF17871 AAA lid domain ALFP_RS07120 PF04403 Paraquat-inducible protein A ALFP_RS07125 PF02470 MlaD protein ALFP_RS07135 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ALFP_RS07135 PF14850 DNA-binding domain of Proline dehydrogenase ALFP_RS07135 PF01619 Proline dehydrogenase ALFP_RS07135 PF00171 Aldehyde dehydrogenase family ALFP_RS07140 PF13458 Periplasmic binding protein ALFP_RS07145 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS07150 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS07150 PF11862 Domain of unknown function (DUF3382) ALFP_RS07155 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_RS07155 PF00005 ABC transporter ALFP_RS07160 PF00005 ABC transporter ALFP_RS07185 PF05971 RNA methyltransferase ALFP_RS07190 PF00692 dUTPase ALFP_RS07195 PF02441 Flavoprotein ALFP_RS07195 PF04127 DNA / pantothenate metabolism flavoprotein ALFP_RS07200 PF01252 Signal peptidase (SPase) II ALFP_RS07205 PF08264 Anticodon-binding domain of tRNA ALFP_RS07205 PF00133 tRNA synthetases class I (I, L, M and V) ALFP_RS07205 PF06827 Zinc finger found in FPG and IleRS ALFP_RS07210 PF01687 Riboflavin kinase ALFP_RS07210 PF06574 FAD synthetase ALFP_RS07215 PF00551 Formyl transferase ALFP_RS07220 PF01029 NusB family ALFP_RS07220 PF01189 16S rRNA methyltransferase RsmB/F ALFP_RS07230 PF00580 UvrD/REP helicase N-terminal domain ALFP_RS07230 PF13361 UvrD-like helicase C-terminal domain ALFP_RS07255 PF02909 Tetracyclin repressor-like, C-terminal domain ALFP_RS07255 PF00440 Bacterial regulatory proteins, tetR family ALFP_RS07260 PF13533 Biotin-lipoyl like ALFP_RS07275 PF07690 Major Facilitator Superfamily ALFP_RS07285 PF12848 ABC transporter ALFP_RS07285 PF00005 ABC transporter ALFP_RS07290 PF05175 Methyltransferase small domain ALFP_RS07295 PF07687 Peptidase dimerisation domain ALFP_RS07295 PF01546 Peptidase family M20/M25/M40 ALFP_RS07300 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ALFP_RS07300 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_RS07300 PF14602 Hexapeptide repeat of succinyl-transferase ALFP_RS07310 PF12833 Helix-turn-helix domain ALFP_RS07310 PF02311 AraC-like ligand binding domain ALFP_RS07320 PF02080 TrkA-C domain ALFP_RS07320 PF03600 Citrate transporter ALFP_RS07365 PF00376 MerR family regulatory protein ALFP_RS07365 PF09278 MerR, DNA binding ALFP_RS07370 PF07690 Major Facilitator Superfamily ALFP_RS07380 PF02515 CoA-transferase family III ALFP_RS07385 PF05697 Bacterial trigger factor protein (TF) ALFP_RS07385 PF05698 Bacterial trigger factor protein (TF) C-terminus ALFP_RS07385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALFP_RS07390 PF00574 Clp protease ALFP_RS07395 PF10431 C-terminal, D2-small domain, of ClpB protein ALFP_RS07395 PF06689 ClpX C4-type zinc finger ALFP_RS07395 PF07724 AAA domain (Cdc48 subfamily) ALFP_RS07400 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_RS07400 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALFP_RS07400 PF05362 Lon protease (S16) C-terminal proteolytic domain ALFP_RS07410 PF01726 LexA DNA binding domain ALFP_RS07410 PF00717 Peptidase S24-like ALFP_RS07415 PF13302 Acetyltransferase (GNAT) domain ALFP_RS07420 PF00155 Aminotransferase class I and II ALFP_RS07425 PF00271 Helicase conserved C-terminal domain ALFP_RS07425 PF02151 UvrB/uvrC motif ALFP_RS07425 PF04851 Type III restriction enzyme, res subunit ALFP_RS07425 PF17757 UvrB interaction domain ALFP_RS07425 PF12344 Ultra-violet resistance protein B ALFP_RS07430 PF01451 Low molecular weight phosphotyrosine protein phosphatase ALFP_RS07435 PF02082 Transcriptional regulator ALFP_RS07440 PF00266 Aminotransferase class-V ALFP_RS07445 PF01592 NifU-like N terminal domain ALFP_RS07450 PF01521 Iron-sulphur cluster biosynthesis ALFP_RS07455 PF02142 MGS-like domain ALFP_RS07465 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS07470 PF01336 OB-fold nucleic acid binding domain ALFP_RS07470 PF00152 tRNA synthetases class II (D, K and N) ALFP_RS07475 PF00106 short chain dehydrogenase ALFP_RS07485 PF00672 HAMP domain ALFP_RS07485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_RS07485 PF02203 Tar ligand binding domain homologue ALFP_RS07490 PF01176 Translation initiation factor 1A / IF-1 ALFP_RS07495 PF00892 EamA-like transporter family ALFP_RS07500 PF01758 Sodium Bile acid symporter family ALFP_RS07510 PF02272 DHHA1 domain ALFP_RS07510 PF01368 DHH family ALFP_RS07510 PF17768 RecJ OB domain ALFP_RS07520 PF02687 FtsX-like permease family ALFP_RS07520 PF12704 MacB-like periplasmic core domain ALFP_RS07525 PF00005 ABC transporter ALFP_RS07530 PF01026 TatD related DNase ALFP_RS07535 PF03772 Competence protein ALFP_RS07535 PF00753 Metallo-beta-lactamase superfamily ALFP_RS07540 PF12697 Alpha/beta hydrolase family ALFP_RS07545 PF02811 PHP domain ALFP_RS07550 PF01272 Transcription elongation factor, GreA/GreB, C-term ALFP_RS07550 PF03449 Transcription elongation factor, N-terminal ALFP_RS07555 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ALFP_RS07555 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ALFP_RS07555 PF02769 AIR synthase related protein, C-terminal domain ALFP_RS07560 PF00478 IMP dehydrogenase / GMP reductase domain ALFP_RS07560 PF00571 CBS domain ALFP_RS07580 PF02540 NAD synthase ALFP_RS07580 PF00958 GMP synthase C terminal domain ALFP_RS07580 PF00117 Glutamine amidotransferase class-I ALFP_RS07615 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALFP_RS07615 PF00691 OmpA family ALFP_RS07645 PF00893 Small Multidrug Resistance protein ALFP_RS07655 PF03466 LysR substrate binding domain ALFP_RS07655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS07660 PF01717 Cobalamin-independent synthase, Catalytic domain ALFP_RS07660 PF08267 Cobalamin-independent synthase, N-terminal domain ALFP_RS07670 PF01717 Cobalamin-independent synthase, Catalytic domain ALFP_RS07680 PF18158 Adaptive response protein AidB N-terminal domain ALFP_RS07680 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_RS07680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS07690 PF08279 HTH domain ALFP_RS07690 PF13280 WYL domain ALFP_RS07695 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALFP_RS07695 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALFP_RS07700 PF02649 Type I GTP cyclohydrolase folE2 ALFP_RS07705 PF01809 Putative membrane protein insertion efficiency factor ALFP_RS07715 PF01979 Amidohydrolase family ALFP_RS07720 PF01475 Ferric uptake regulator family ALFP_RS07725 PF01502 Phosphoribosyl-AMP cyclohydrolase ALFP_RS07730 PF01970 Tripartite tricarboxylate transporter TctA family ALFP_RS07740 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS07740 PF08448 PAS fold ALFP_RS07740 PF13426 PAS domain ALFP_RS07740 PF00072 Response regulator receiver domain ALFP_RS07740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS07745 PF00072 Response regulator receiver domain ALFP_RS07745 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS07750 PF08543 Phosphomethylpyrimidine kinase ALFP_RS07760 PF03466 LysR substrate binding domain ALFP_RS07760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS07765 PF04632 Fusaric acid resistance protein family ALFP_RS07775 PF13533 Biotin-lipoyl like ALFP_RS07785 PF14552 Tautomerase enzyme ALFP_RS07790 PF00175 Oxidoreductase NAD-binding domain ALFP_RS07790 PF00042 Globin ALFP_RS07790 PF00970 Oxidoreductase FAD-binding domain ALFP_RS07795 PF00171 Aldehyde dehydrogenase family ALFP_RS07800 PF04341 Protein of unknown function, DUF485 ALFP_RS07805 PF00474 Sodium:solute symporter family ALFP_RS07815 PF03060 Nitronate monooxygenase ALFP_RS07820 PF03466 LysR substrate binding domain ALFP_RS07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS07840 PF16859 Tetracyclin repressor-like, C-terminal domain ALFP_RS07840 PF00440 Bacterial regulatory proteins, tetR family ALFP_RS07845 PF03033 Glycosyltransferase family 28 N-terminal domain ALFP_RS07855 PF02798 Glutathione S-transferase, N-terminal domain ALFP_RS07860 PF03466 LysR substrate binding domain ALFP_RS07860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS07880 PF02798 Glutathione S-transferase, N-terminal domain ALFP_RS07885 PF00574 Clp protease ALFP_RS07915 PF00891 O-methyltransferase domain ALFP_RS07925 PF00581 Rhodanese-like domain ALFP_RS07925 PF00899 ThiF family ALFP_RS07930 PF14464 Prokaryotic homologs of the JAB domain ALFP_RS07935 PF02597 ThiS family ALFP_RS07940 PF02515 CoA-transferase family III ALFP_RS07945 PF00501 AMP-binding enzyme ALFP_RS07945 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS07950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_RS07950 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_RS07950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS07970 PF02627 Carboxymuconolactone decarboxylase family ALFP_RS07975 PF01022 Bacterial regulatory protein, arsR family ALFP_RS07995 PF12833 Helix-turn-helix domain ALFP_RS07995 PF02311 AraC-like ligand binding domain ALFP_RS08000 PF00682 HMGL-like ALFP_RS08000 PF08502 LeuA allosteric (dimerisation) domain ALFP_RS08015 PF03466 LysR substrate binding domain ALFP_RS08015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS08020 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALFP_RS08020 PF13378 Enolase C-terminal domain-like ALFP_RS08025 PF00775 Dioxygenase ALFP_RS08025 PF04444 Catechol dioxygenase N terminus ALFP_RS08030 PF01144 Coenzyme A transferase ALFP_RS08035 PF01144 Coenzyme A transferase ALFP_RS08040 PF12146 Serine aminopeptidase, S33 ALFP_RS08045 PF02426 Muconolactone delta-isomerase ALFP_RS08050 PF03594 Benzoate membrane transport protein ALFP_RS08055 PF01926 50S ribosome-binding GTPase ALFP_RS08060 PF01926 50S ribosome-binding GTPase ALFP_RS08065 PF02535 ZIP Zinc transporter ALFP_RS08070 PF00005 ABC transporter ALFP_RS08075 PF00850 Histone deacetylase domain ALFP_RS08080 PF00196 Bacterial regulatory proteins, luxR family ALFP_RS08080 PF00072 Response regulator receiver domain ALFP_RS08085 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALFP_RS08085 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALFP_RS08110 PF12802 MarR family ALFP_RS08115 PF01494 FAD binding domain ALFP_RS08120 PF07690 Major Facilitator Superfamily ALFP_RS08130 PF01168 Alanine racemase, N-terminal domain ALFP_RS08135 PF00155 Aminotransferase class I and II ALFP_RS08135 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS08140 PF00892 EamA-like transporter family ALFP_RS08150 PF18081 Fanconi anemia-associated nuclease SAP domain ALFP_RS08150 PF08774 VRR-NUC domain ALFP_RS08160 PF01266 FAD dependent oxidoreductase ALFP_RS08165 PF00890 FAD binding domain ALFP_RS08170 PF02445 Quinolinate synthetase A protein ALFP_RS08175 PF00248 Aldo/keto reductase family ALFP_RS08195 PF01965 DJ-1/PfpI family ALFP_RS08200 PF12706 Beta-lactamase superfamily domain ALFP_RS08205 PF00857 Isochorismatase family ALFP_RS08215 PF02586 SOS response associated peptidase (SRAP) ALFP_RS08230 PF03006 Haemolysin-III related ALFP_RS08235 PF07411 Domain of unknown function (DUF1508) ALFP_RS08255 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_RS08260 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS08265 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS08270 PF00005 ABC transporter ALFP_RS08295 PF02954 Bacterial regulatory protein, Fis family ALFP_RS08295 PF00158 Sigma-54 interaction domain ALFP_RS08295 PF02830 V4R domain ALFP_RS08295 PF06505 Activator of aromatic catabolism ALFP_RS08300 PF06099 Phenol hydroxylase subunit ALFP_RS08305 PF02332 Methane/Phenol/Toluene Hydroxylase ALFP_RS08310 PF02406 MmoB/DmpM family ALFP_RS08315 PF04945 YHS domain ALFP_RS08315 PF02332 Methane/Phenol/Toluene Hydroxylase ALFP_RS08320 PF04663 Phenol hydroxylase conserved region ALFP_RS08325 PF00175 Oxidoreductase NAD-binding domain ALFP_RS08325 PF00970 Oxidoreductase FAD-binding domain ALFP_RS08325 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS08330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS08330 PF03466 LysR substrate binding domain ALFP_RS08335 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_RS08335 PF00355 Rieske [2Fe-2S] domain ALFP_RS08340 PF00866 Ring hydroxylating beta subunit ALFP_RS08345 PF00175 Oxidoreductase NAD-binding domain ALFP_RS08345 PF00970 Oxidoreductase FAD-binding domain ALFP_RS08345 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS08350 PF00106 short chain dehydrogenase ALFP_RS08355 PF07690 Major Facilitator Superfamily ALFP_RS08360 PF01810 LysE type translocator ALFP_RS08370 PF00356 Bacterial regulatory proteins, lacI family ALFP_RS08380 PF01979 Amidohydrolase family ALFP_RS08385 PF00860 Permease family ALFP_RS08405 PF16200 C-terminal region of band_7 ALFP_RS08405 PF01145 SPFH domain / Band 7 family ALFP_RS08410 PF01957 NfeD-like C-terminal, partner-binding ALFP_RS08415 PF13649 Methyltransferase domain ALFP_RS08425 PF03891 Domain of unknown function (DUF333) ALFP_RS08435 PF00294 pfkB family carbohydrate kinase ALFP_RS08450 PF03129 Anticodon binding domain ALFP_RS08450 PF02824 TGS domain ALFP_RS08450 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALFP_RS08450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_RS08455 PF05198 Translation initiation factor IF-3, N-terminal domain ALFP_RS08455 PF00707 Translation initiation factor IF-3, C-terminal domain ALFP_RS08460 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ALFP_RS08460 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ALFP_RS08470 PF00381 PTS HPr component phosphorylation site ALFP_RS08475 PF05524 PEP-utilising enzyme, N-terminal ALFP_RS08475 PF00391 PEP-utilising enzyme, mobile domain ALFP_RS08475 PF02896 PEP-utilising enzyme, TIM barrel domain ALFP_RS08500 PF01078 Magnesium chelatase, subunit ChlI ALFP_RS08500 PF13335 Magnesium chelatase, subunit ChlI C-terminal ALFP_RS08505 PF01632 Ribosomal protein L35 ALFP_RS08510 PF00453 Ribosomal protein L20 ALFP_RS08515 PF01409 tRNA synthetases class II core domain (F) ALFP_RS08515 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ALFP_RS08520 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ALFP_RS08520 PF01588 Putative tRNA binding domain ALFP_RS08520 PF03483 B3/4 domain ALFP_RS08520 PF03147 Ferredoxin-fold anticodon binding domain ALFP_RS08520 PF03484 tRNA synthetase B5 domain ALFP_RS08525 PF00216 Bacterial DNA-binding protein ALFP_RS08535 PF04305 Protein of unknown function (DUF455) ALFP_RS08545 PF00005 ABC transporter ALFP_RS08545 PF00664 ABC transporter transmembrane region ALFP_RS08550 PF02082 Transcriptional regulator ALFP_RS08555 PF01458 Uncharacterized protein family (UPF0051) ALFP_RS08560 PF00005 ABC transporter ALFP_RS08565 PF01458 Uncharacterized protein family (UPF0051) ALFP_RS08570 PF00266 Aminotransferase class-V ALFP_RS08575 PF01592 NifU-like N terminal domain ALFP_RS08580 PF01883 Iron-sulfur cluster assembly protein ALFP_RS08600 PF02321 Outer membrane efflux protein ALFP_RS08610 PF03412 Peptidase C39 family ALFP_RS08610 PF00005 ABC transporter ALFP_RS08610 PF00664 ABC transporter transmembrane region ALFP_RS08615 PF00529 HlyD membrane-fusion protein of T1SS ALFP_RS08635 PF01225 Mur ligase family, catalytic domain ALFP_RS08635 PF08245 Mur ligase middle domain ALFP_RS08635 PF02875 Mur ligase family, glutamate ligase domain ALFP_RS08640 PF01225 Mur ligase family, catalytic domain ALFP_RS08640 PF08245 Mur ligase middle domain ALFP_RS08640 PF02875 Mur ligase family, glutamate ligase domain ALFP_RS08645 PF07478 D-ala D-ala ligase C-terminus ALFP_RS08645 PF01820 D-ala D-ala ligase N-terminus ALFP_RS08650 PF01380 SIS domain ALFP_RS08650 PF01418 Helix-turn-helix domain, rpiR family ALFP_RS08655 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_RS08660 PF07687 Peptidase dimerisation domain ALFP_RS08660 PF01546 Peptidase family M20/M25/M40 ALFP_RS08665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALFP_RS08670 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS08675 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS08680 PF00005 ABC transporter ALFP_RS08680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_RS08685 PF00795 Carbon-nitrogen hydrolase ALFP_RS08690 PF07687 Peptidase dimerisation domain ALFP_RS08690 PF01546 Peptidase family M20/M25/M40 ALFP_RS08695 PF07171 MlrC C-terminus ALFP_RS08695 PF07364 Metallopeptidase family M81 ALFP_RS08730 PF00175 Oxidoreductase NAD-binding domain ALFP_RS08730 PF00042 Globin ALFP_RS08730 PF00970 Oxidoreductase FAD-binding domain ALFP_RS08735 PF02082 Transcriptional regulator ALFP_RS08740 PF04381 Putative exonuclease, RdgC ALFP_RS08820 PF03354 Phage Terminase ALFP_RS08860 PF03592 Terminase small subunit ALFP_RS08875 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) ALFP_RS09015 PF02586 SOS response associated peptidase (SRAP) ALFP_RS09055 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_RS09060 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS09065 PF00034 Cytochrome c ALFP_RS09065 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS09070 PF01266 FAD dependent oxidoreductase ALFP_RS09085 PF03781 Sulfatase-modifying factor enzyme 1 ALFP_RS09100 PF02386 Cation transport protein ALFP_RS09105 PF02080 TrkA-C domain ALFP_RS09105 PF02254 TrkA-N domain ALFP_RS09110 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALFP_RS09120 PF09424 Yqey-like protein ALFP_RS09125 PF14579 Helix-hairpin-helix motif ALFP_RS09125 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALFP_RS09125 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALFP_RS09125 PF02811 PHP domain ALFP_RS09160 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS09165 PF03466 LysR substrate binding domain ALFP_RS09165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS09170 PF00768 D-alanyl-D-alanine carboxypeptidase ALFP_RS09180 PF01618 MotA/TolQ/ExbB proton channel family ALFP_RS09185 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALFP_RS09185 PF00691 OmpA family ALFP_RS09200 PF00296 Luciferase-like monooxygenase ALFP_RS09205 PF00106 short chain dehydrogenase ALFP_RS09210 PF00677 Lumazine binding domain ALFP_RS09225 PF00384 Molybdopterin oxidoreductase ALFP_RS09225 PF01568 Molydopterin dinucleotide binding domain ALFP_RS09225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALFP_RS09230 PF03916 Polysulphide reductase, NrfD ALFP_RS09235 PF13247 4Fe-4S dicluster domain ALFP_RS09240 PF00593 TonB dependent receptor ALFP_RS09240 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS09250 PF03069 Acetamidase/Formamidase family ALFP_RS09255 PF01979 Amidohydrolase family ALFP_RS09260 PF00860 Permease family ALFP_RS09265 PF00011 Hsp20/alpha crystallin family ALFP_RS09270 PF01546 Peptidase family M20/M25/M40 ALFP_RS09270 PF07687 Peptidase dimerisation domain ALFP_RS09280 PF07690 Major Facilitator Superfamily ALFP_RS09300 PF01494 FAD binding domain ALFP_RS09310 PF09297 NADH pyrophosphatase zinc ribbon domain ALFP_RS09310 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ALFP_RS09310 PF00293 NUDIX domain ALFP_RS09315 PF03755 YicC-like family, N-terminal region ALFP_RS09315 PF08340 Domain of unknown function (DUF1732) ALFP_RS09320 PF00149 Calcineurin-like phosphoesterase ALFP_RS09325 PF13175 AAA ATPase domain ALFP_RS09330 PF01138 3' exoribonuclease family, domain 1 ALFP_RS09330 PF03725 3' exoribonuclease family, domain 2 ALFP_RS09335 PF01725 Ham1 family ALFP_RS09340 PF06969 HemN C-terminal domain ALFP_RS09340 PF04055 Radical SAM superfamily ALFP_RS09345 PF03951 Glutamine synthetase, beta-Grasp domain ALFP_RS09345 PF00120 Glutamine synthetase, catalytic domain ALFP_RS09350 PF13673 Acetyltransferase (GNAT) domain ALFP_RS09355 PF03466 LysR substrate binding domain ALFP_RS09355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS09370 PF08402 TOBE domain ALFP_RS09370 PF00005 ABC transporter ALFP_RS09375 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS09385 PF00970 Oxidoreductase FAD-binding domain ALFP_RS09385 PF00175 Oxidoreductase NAD-binding domain ALFP_RS09390 PF01042 Endoribonuclease L-PSP ALFP_RS09395 PF00271 Helicase conserved C-terminal domain ALFP_RS09395 PF00270 DEAD/DEAH box helicase ALFP_RS09395 PF17191 RecG wedge domain ALFP_RS09400 PF03466 LysR substrate binding domain ALFP_RS09400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS09410 PF00210 Ferritin-like domain ALFP_RS09415 PF13458 Periplasmic binding protein ALFP_RS09420 PF00005 ABC transporter ALFP_RS09420 PF17912 MalK OB fold domain ALFP_RS09425 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS09430 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS09435 PF13416 Bacterial extracellular solute-binding protein ALFP_RS09440 PF14748 Pyrroline-5-carboxylate reductase dimerisation ALFP_RS09440 PF03807 NADP oxidoreductase coenzyme F420-dependent ALFP_RS09445 PF13458 Periplasmic binding protein ALFP_RS09450 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS09455 PF11862 Domain of unknown function (DUF3382) ALFP_RS09455 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS09460 PF00005 ABC transporter ALFP_RS09460 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_RS09465 PF00005 ABC transporter ALFP_RS09470 PF00043 Glutathione S-transferase, C-terminal domain ALFP_RS09470 PF02798 Glutathione S-transferase, N-terminal domain ALFP_RS09475 PF00326 Prolyl oligopeptidase family ALFP_RS09480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_RS09480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_RS09490 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALFP_RS09490 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALFP_RS09495 PF00206 Lyase ALFP_RS09495 PF10415 Fumarase C C-terminus ALFP_RS09500 PF07995 Glucose / Sorbosone dehydrogenase ALFP_RS09505 PF08241 Methyltransferase domain ALFP_RS09510 PF00582 Universal stress protein family ALFP_RS09515 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS09520 PF12833 Helix-turn-helix domain ALFP_RS09520 PF02311 AraC-like ligand binding domain ALFP_RS09525 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_RS09535 PF00171 Aldehyde dehydrogenase family ALFP_RS09540 PF01494 FAD binding domain ALFP_RS09545 PF07690 Major Facilitator Superfamily ALFP_RS09555 PF03466 LysR substrate binding domain ALFP_RS09555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS09565 PF00403 Heavy-metal-associated domain ALFP_RS09570 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ ALFP_RS09585 PF03466 LysR substrate binding domain ALFP_RS09585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS09590 PF02899 Phage integrase, N-terminal SAM-like domain ALFP_RS09590 PF00589 Phage integrase family ALFP_RS09600 PF07731 Multicopper oxidase ALFP_RS09600 PF00394 Multicopper oxidase ALFP_RS09600 PF07732 Multicopper oxidase ALFP_RS09605 PF02222 ATP-grasp domain ALFP_RS09615 PF03976 Polyphosphate kinase 2 (PPK2) ALFP_RS09645 PF01292 Prokaryotic cytochrome b561 ALFP_RS09655 PF04264 YceI-like domain ALFP_RS09660 PF03960 ArsC family ALFP_RS09665 PF00043 Glutathione S-transferase, C-terminal domain ALFP_RS09665 PF02798 Glutathione S-transferase, N-terminal domain ALFP_RS09675 PF03358 NADPH-dependent FMN reductase ALFP_RS09685 PF01026 TatD related DNase ALFP_RS09690 PF09115 DNA polymerase III, delta subunit, C terminal ALFP_RS09700 PF02618 YceG-like family ALFP_RS09710 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_RS09710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_RS09720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_RS09720 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_RS09720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS09725 PF03658 RnfH family Ubiquitin ALFP_RS09730 PF03364 Polyketide cyclase / dehydrase and lipid transport ALFP_RS09735 PF01668 SmpB protein ALFP_RS09740 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS09750 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ALFP_RS09750 PF02896 PEP-utilising enzyme, TIM barrel domain ALFP_RS09750 PF00391 PEP-utilising enzyme, mobile domain ALFP_RS09755 PF03618 Kinase/pyrophosphorylase ALFP_RS09760 PF01425 Amidase ALFP_RS09765 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALFP_RS09765 PF00588 SpoU rRNA Methylase family ALFP_RS09770 PF01351 Ribonuclease HII ALFP_RS09775 PF02684 Lipid-A-disaccharide synthetase ALFP_RS09780 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ALFP_RS09780 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_RS09785 PF07977 FabA-like domain ALFP_RS09790 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ALFP_RS09790 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_RS09795 PF03938 Outer membrane protein (OmpH-like) ALFP_RS09800 PF07244 Surface antigen variable number repeat ALFP_RS09800 PF01103 Surface antigen ALFP_RS09805 PF13180 PDZ domain ALFP_RS09805 PF02163 Peptidase family M50 ALFP_RS09805 PF17820 PDZ domain ALFP_RS09810 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ALFP_RS09810 PF13288 DXP reductoisomerase C-terminal domain ALFP_RS09810 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ALFP_RS09820 PF01255 Putative undecaprenyl diphosphate synthase ALFP_RS09825 PF01765 Ribosome recycling factor ALFP_RS09830 PF00696 Amino acid kinase family ALFP_RS09835 PF00889 Elongation factor TS ALFP_RS09840 PF00318 Ribosomal protein S2 ALFP_RS09845 PF00557 Metallopeptidase family M24 ALFP_RS09850 PF01909 Nucleotidyltransferase domain ALFP_RS09850 PF01966 HD domain ALFP_RS09850 PF08335 GlnD PII-uridylyltransferase ALFP_RS09855 PF01914 MarC family integral membrane protein ALFP_RS09865 PF00144 Beta-lactamase ALFP_RS09870 PF00156 Phosphoribosyl transferase domain ALFP_RS09875 PF02674 Colicin V production protein ALFP_RS09885 PF02875 Mur ligase family, glutamate ligase domain ALFP_RS09885 PF08245 Mur ligase middle domain ALFP_RS09890 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS09890 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALFP_RS09895 PF02817 e3 binding domain ALFP_RS09895 PF00364 Biotin-requiring enzyme ALFP_RS09895 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALFP_RS09900 PF00456 Transketolase, thiamine diphosphate binding domain ALFP_RS09900 PF17831 Pyruvate dehydrogenase E1 component middle domain ALFP_RS09905 PF00989 PAS fold ALFP_RS09905 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS09905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS09910 PF00072 Response regulator receiver domain ALFP_RS09910 PF00196 Bacterial regulatory proteins, luxR family ALFP_RS09915 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ALFP_RS09915 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ALFP_RS09920 PF01432 Peptidase family M3 ALFP_RS09925 PF02630 SCO1/SenC ALFP_RS09930 PF03764 Elongation factor G, domain IV ALFP_RS09930 PF03144 Elongation factor Tu domain 2 ALFP_RS09930 PF00679 Elongation factor G C-terminus ALFP_RS09930 PF14492 Elongation Factor G, domain II ALFP_RS09930 PF00009 Elongation factor Tu GTP binding domain ALFP_RS09935 PF01022 Bacterial regulatory protein, arsR family ALFP_RS09940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALFP_RS09940 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS09945 PF00376 MerR family regulatory protein ALFP_RS09945 PF09278 MerR, DNA binding ALFP_RS09955 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ALFP_RS09960 PF02321 Outer membrane efflux protein ALFP_RS09965 PF00873 AcrB/AcrD/AcrF family ALFP_RS09970 PF00529 HlyD membrane-fusion protein of T1SS ALFP_RS09970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_RS09975 PF00005 ABC transporter ALFP_RS10000 PF00108 Thiolase, N-terminal domain ALFP_RS10000 PF02803 Thiolase, C-terminal domain ALFP_RS10015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS10015 PF03466 LysR substrate binding domain ALFP_RS10020 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ALFP_RS10020 PF01276 Orn/Lys/Arg decarboxylase, major domain ALFP_RS10020 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ALFP_RS10040 PF00625 Guanylate kinase ALFP_RS10045 PF01192 RNA polymerase Rpb6 ALFP_RS10050 PF02824 TGS domain ALFP_RS10050 PF13291 ACT domain ALFP_RS10050 PF04607 Region found in RelA / SpoT proteins ALFP_RS10060 PF03591 AzlC protein ALFP_RS10065 PF01476 LysM domain ALFP_RS10065 PF08525 Opacity-associated protein A N-terminal motif ALFP_RS10065 PF01551 Peptidase family M23 ALFP_RS10070 PF00639 PPIC-type PPIASE domain ALFP_RS10070 PF09312 SurA N-terminal domain ALFP_RS10075 PF03009 Glycerophosphoryl diester phosphodiesterase family ALFP_RS10080 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ALFP_RS10085 PF00849 RNA pseudouridylate synthase ALFP_RS10085 PF01479 S4 domain ALFP_RS10090 PF04345 Chorismate lyase ALFP_RS10095 PF07690 Major Facilitator Superfamily ALFP_RS10100 PF00248 Aldo/keto reductase family ALFP_RS10105 PF00543 Nitrogen regulatory protein P-II ALFP_RS10110 PF00924 Mechanosensitive ion channel ALFP_RS10115 PF00206 Lyase ALFP_RS10115 PF14698 Argininosuccinate lyase C-terminal ALFP_RS10120 PF00480 ROK family ALFP_RS10125 PF01804 Penicillin amidase ALFP_RS10130 PF01266 FAD dependent oxidoreductase ALFP_RS10140 PF05958 tRNA (Uracil-5-)-methyltransferase ALFP_RS10145 PF01476 LysM domain ALFP_RS10145 PF01551 Peptidase family M23 ALFP_RS10155 PF01975 Survival protein SurE ALFP_RS10160 PF02660 Glycerol-3-phosphate acyltransferase ALFP_RS10165 PF00814 Glycoprotease family ALFP_RS10170 PF00860 Permease family ALFP_RS10175 PF00085 Thioredoxin ALFP_RS10190 PF01205 Uncharacterized protein family UPF0029 ALFP_RS10195 PF00005 ABC transporter ALFP_RS10195 PF12848 ABC transporter ALFP_RS10200 PF17676 LD-carboxypeptidase C-terminal domain ALFP_RS10200 PF02016 LD-carboxypeptidase N-terminal domain ALFP_RS10205 PF14437 MafB19-like deaminase ALFP_RS10210 PF00005 ABC transporter ALFP_RS10215 PF01061 ABC-2 type transporter ALFP_RS10225 PF04461 Protein of unknown function (DUF520) ALFP_RS10230 PF00501 AMP-binding enzyme ALFP_RS10230 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS10235 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ALFP_RS10240 PF00117 Glutamine amidotransferase class-I ALFP_RS10240 PF00958 GMP synthase C terminal domain ALFP_RS10240 PF02540 NAD synthase ALFP_RS10245 PF12833 Helix-turn-helix domain ALFP_RS10245 PF02311 AraC-like ligand binding domain ALFP_RS10250 PF13593 SBF-like CPA transporter family (DUF4137) ALFP_RS10255 PF08534 Redoxin ALFP_RS10260 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ALFP_RS10265 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS10275 PF01416 tRNA pseudouridine synthase ALFP_RS10285 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALFP_RS10285 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALFP_RS10290 PF00180 Isocitrate/isopropylmalate dehydrogenase ALFP_RS10295 PF00694 Aconitase C-terminal domain ALFP_RS10300 PF00330 Aconitase family (aconitate hydratase) ALFP_RS10305 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS10305 PF00155 Aminotransferase class I and II ALFP_RS10310 PF02627 Carboxymuconolactone decarboxylase family ALFP_RS10320 PF00072 Response regulator receiver domain ALFP_RS10320 PF00196 Bacterial regulatory proteins, luxR family ALFP_RS10325 PF08448 PAS fold ALFP_RS10325 PF13426 PAS domain ALFP_RS10325 PF00072 Response regulator receiver domain ALFP_RS10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS10325 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS10335 PF01264 Chorismate synthase ALFP_RS10340 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ALFP_RS10350 PF03631 Virulence factor BrkB ALFP_RS10360 PF01207 Dihydrouridine synthase (Dus) ALFP_RS10365 PF01636 Phosphotransferase enzyme family ALFP_RS10390 PF00437 Type II/IV secretion system protein ALFP_RS10395 PF00263 Bacterial type II and III secretion system protein ALFP_RS10395 PF13629 Pilus formation protein N terminal region ALFP_RS10395 PF04972 BON domain ALFP_RS10425 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_RS10430 PF00719 Inorganic pyrophosphatase ALFP_RS10440 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ALFP_RS10450 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ALFP_RS10450 PF03900 Porphobilinogen deaminase, C-terminal domain ALFP_RS10455 PF03741 Integral membrane protein TerC family ALFP_RS10460 PF00549 CoA-ligase ALFP_RS10460 PF02629 CoA binding domain ALFP_RS10465 PF00549 CoA-ligase ALFP_RS10465 PF08442 ATP-grasp domain ALFP_RS10475 PF01717 Cobalamin-independent synthase, Catalytic domain ALFP_RS10475 PF08267 Cobalamin-independent synthase, N-terminal domain ALFP_RS10480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS10480 PF03466 LysR substrate binding domain ALFP_RS10485 PF02631 RecX family ALFP_RS10490 PF00154 recA bacterial DNA recombination protein ALFP_RS10495 PF00072 Response regulator receiver domain ALFP_RS10495 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS10500 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS10500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS10505 PF08946 Osmosensory transporter coiled coil ALFP_RS10505 PF00083 Sugar (and other) transporter ALFP_RS10510 PF04381 Putative exonuclease, RdgC ALFP_RS10520 PF00501 AMP-binding enzyme ALFP_RS10520 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS10525 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS10530 PF04341 Protein of unknown function, DUF485 ALFP_RS10535 PF00474 Sodium:solute symporter family ALFP_RS10540 PF00171 Aldehyde dehydrogenase family ALFP_RS10545 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALFP_RS10545 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALFP_RS10560 PF00905 Penicillin binding protein transpeptidase domain ALFP_RS10560 PF00912 Transglycosylase ALFP_RS10565 PF07703 Alpha-2-macroglobulin bait region domain ALFP_RS10565 PF00207 Alpha-2-macroglobulin family ALFP_RS10565 PF01835 MG2 domain ALFP_RS10575 PF03060 Nitronate monooxygenase ALFP_RS10580 PF06969 HemN C-terminal domain ALFP_RS10580 PF04055 Radical SAM superfamily ALFP_RS10585 PF13244 Domain of unknown function (DUF4040) ALFP_RS10585 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ALFP_RS10585 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALFP_RS10585 PF00361 Proton-conducting membrane transporter ALFP_RS10590 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALFP_RS10595 PF00361 Proton-conducting membrane transporter ALFP_RS10605 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ALFP_RS10620 PF07690 Major Facilitator Superfamily ALFP_RS10620 PF00083 Sugar (and other) transporter ALFP_RS10630 PF00037 4Fe-4S binding domain ALFP_RS10630 PF11953 Domain of unknown function (DUF3470) ALFP_RS10645 PF02705 K+ potassium transporter ALFP_RS10650 PF08521 Two-component sensor kinase N-terminal ALFP_RS10650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS10650 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS10655 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS10655 PF00072 Response regulator receiver domain ALFP_RS10660 PF02472 Biopolymer transport protein ExbD/TolR ALFP_RS10665 PF01618 MotA/TolQ/ExbB proton channel family ALFP_RS10675 PF00005 ABC transporter ALFP_RS10675 PF12857 TOBE-like domain ALFP_RS10680 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS10685 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS10705 PF00313 'Cold-shock' DNA-binding domain ALFP_RS10715 PF00216 Bacterial DNA-binding protein ALFP_RS10720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_RS10720 PF14824 Sirohaem biosynthesis protein central ALFP_RS10720 PF10414 Sirohaem synthase dimerisation region ALFP_RS10725 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS10735 PF13404 AsnC-type helix-turn-helix domain ALFP_RS10735 PF17805 AsnC-like ligand binding domain ALFP_RS10740 PF13404 AsnC-type helix-turn-helix domain ALFP_RS10740 PF17805 AsnC-like ligand binding domain ALFP_RS10745 PF17805 AsnC-like ligand binding domain ALFP_RS10745 PF13404 AsnC-type helix-turn-helix domain ALFP_RS10750 PF04055 Radical SAM superfamily ALFP_RS10750 PF13186 Iron-sulfur cluster-binding domain ALFP_RS10760 PF14824 Sirohaem biosynthesis protein central ALFP_RS10760 PF10414 Sirohaem synthase dimerisation region ALFP_RS10760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_RS10765 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS10770 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS10775 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS10775 PF00155 Aminotransferase class I and II ALFP_RS10780 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_RS10785 PF00588 SpoU rRNA Methylase family ALFP_RS10785 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALFP_RS10790 PF08461 Ribonuclease R winged-helix domain ALFP_RS10790 PF08206 Ribonuclease B OB domain ALFP_RS10790 PF17876 Cold shock domain ALFP_RS10790 PF00575 S1 RNA binding domain ALFP_RS10790 PF00773 RNB domain ALFP_RS10805 PF00356 Bacterial regulatory proteins, lacI family ALFP_RS10810 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS10815 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS10820 PF00005 ABC transporter ALFP_RS10825 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_RS10835 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain ALFP_RS10835 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain ALFP_RS10840 PF07005 Sugar-binding N-terminal domain ALFP_RS10840 PF17042 Nucleotide-binding C-terminal domain ALFP_RS10855 PF04954 Siderophore-interacting protein ALFP_RS10855 PF08021 Siderophore-interacting FAD-binding domain ALFP_RS10870 PF01494 FAD binding domain ALFP_RS10875 PF06750 Bacterial Peptidase A24 N-terminal domain ALFP_RS10875 PF01478 Type IV leader peptidase family ALFP_RS10885 PF03466 LysR substrate binding domain ALFP_RS10885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS10890 PF08402 TOBE domain ALFP_RS10890 PF00005 ABC transporter ALFP_RS10895 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS10900 PF13419 Haloacid dehalogenase-like hydrolase ALFP_RS10910 PF01266 FAD dependent oxidoreductase ALFP_RS10925 PF01738 Dienelactone hydrolase family ALFP_RS10930 PF12843 Putative quorum-sensing-regulated virulence factor ALFP_RS10935 PF02798 Glutathione S-transferase, N-terminal domain ALFP_RS10940 PF02678 Pirin ALFP_RS10940 PF05726 Pirin C-terminal cupin domain ALFP_RS10950 PF00795 Carbon-nitrogen hydrolase ALFP_RS10955 PF07690 Major Facilitator Superfamily ALFP_RS10960 PF07690 Major Facilitator Superfamily ALFP_RS10965 PF02311 AraC-like ligand binding domain ALFP_RS10965 PF12833 Helix-turn-helix domain ALFP_RS10970 PF03594 Benzoate membrane transport protein ALFP_RS10980 PF03746 LamB/YcsF family ALFP_RS10985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS10985 PF03466 LysR substrate binding domain ALFP_RS10990 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS10990 PF01799 [2Fe-2S] binding domain ALFP_RS10995 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_RS10995 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_RS11005 PF01979 Amidohydrolase family ALFP_RS11010 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ALFP_RS11015 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS11015 PF00072 Response regulator receiver domain ALFP_RS11020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS11020 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS11020 PF00672 HAMP domain ALFP_RS11025 PF00140 Sigma-70 factor, region 1.2 ALFP_RS11025 PF04545 Sigma-70, region 4 ALFP_RS11025 PF04539 Sigma-70 region 3 ALFP_RS11025 PF04542 Sigma-70 region 2 ALFP_RS11025 PF04546 Sigma-70, non-essential region ALFP_RS11025 PF03979 Sigma-70 factor, region 1.1 ALFP_RS11030 PF08278 DNA primase DnaG DnaB-binding ALFP_RS11030 PF01807 CHC2 zinc finger ALFP_RS11030 PF10410 DnaB-helicase binding domain of primase ALFP_RS11030 PF08275 DNA primase catalytic core, N-terminal domain ALFP_RS11035 PF01165 Ribosomal protein S21 ALFP_RS11040 PF00156 Phosphoribosyl transferase domain ALFP_RS11045 PF00709 Adenylosuccinate synthetase ALFP_RS11050 PF13393 Histidyl-tRNA synthetase ALFP_RS11055 PF01145 SPFH domain / Band 7 family ALFP_RS11060 PF12221 Bacterial membrane protein N terminal ALFP_RS11060 PF01145 SPFH domain / Band 7 family ALFP_RS11065 PF01926 50S ribosome-binding GTPase ALFP_RS11065 PF13167 GTP-binding GTPase N-terminal ALFP_RS11065 PF16360 GTP-binding GTPase Middle Region ALFP_RS11070 PF17209 Hfq protein ALFP_RS11075 PF00155 Aminotransferase class I and II ALFP_RS11080 PF01926 50S ribosome-binding GTPase ALFP_RS11080 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ALFP_RS11085 PF13360 PQQ-like domain ALFP_RS11090 PF09976 Tetratricopeptide repeat-like domain ALFP_RS11095 PF13393 Histidyl-tRNA synthetase ALFP_RS11095 PF03129 Anticodon binding domain ALFP_RS11100 PF04551 GcpE protein ALFP_RS11110 PF04055 Radical SAM superfamily ALFP_RS11115 PF00334 Nucleoside diphosphate kinase ALFP_RS11120 PF10458 Valyl tRNA synthetase tRNA binding arm ALFP_RS11120 PF08264 Anticodon-binding domain of tRNA ALFP_RS11120 PF00133 tRNA synthetases class I (I, L, M and V) ALFP_RS11125 PF01746 tRNA (Guanine-1)-methyltransferase ALFP_RS11130 PF01782 RimM N-terminal domain ALFP_RS11135 PF00886 Ribosomal protein S16 ALFP_RS11140 PF01206 Sulfurtransferase TusA ALFP_RS11145 PF02272 DHHA1 domain ALFP_RS11145 PF01411 tRNA synthetases class II (A) ALFP_RS11145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_RS11160 PF00576 HIUase/Transthyretin family ALFP_RS11190 PF13416 Bacterial extracellular solute-binding protein ALFP_RS11195 PF01266 FAD dependent oxidoreductase ALFP_RS11200 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS11200 PF00970 Oxidoreductase FAD-binding domain ALFP_RS11200 PF00175 Oxidoreductase NAD-binding domain ALFP_RS11205 PF00521 DNA gyrase/topoisomerase IV, subunit A ALFP_RS11210 PF01751 Toprim domain ALFP_RS11210 PF00204 DNA gyrase B ALFP_RS11210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS11210 PF00986 DNA gyrase B subunit, carboxyl terminus ALFP_RS11215 PF00085 Thioredoxin ALFP_RS11220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_RS11220 PF07498 Rho termination factor, N-terminal domain ALFP_RS11220 PF07497 Rho termination factor, RNA-binding domain ALFP_RS11225 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALFP_RS11225 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALFP_RS11235 PF00866 Ring hydroxylating beta subunit ALFP_RS11240 PF00355 Rieske [2Fe-2S] domain ALFP_RS11240 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_RS11245 PF00005 ABC transporter ALFP_RS11245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALFP_RS11250 PF12911 N-terminal TM domain of oligopeptide transport permease C ALFP_RS11250 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS11255 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS11260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALFP_RS11270 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS11270 PF07729 FCD domain ALFP_RS11285 PF03710 Glutamate-ammonia ligase adenylyltransferase ALFP_RS11285 PF08335 GlnD PII-uridylyltransferase ALFP_RS11290 PF02677 Epoxyqueuosine reductase QueH ALFP_RS11295 PF10431 C-terminal, D2-small domain, of ClpB protein ALFP_RS11295 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_RS11295 PF07724 AAA domain (Cdc48 subfamily) ALFP_RS11295 PF02861 Clp amino terminal domain, pathogenicity island component ALFP_RS11295 PF17871 AAA lid domain ALFP_RS11300 PF00027 Cyclic nucleotide-binding domain ALFP_RS11300 PF13545 Crp-like helix-turn-helix domain ALFP_RS11315 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALFP_RS11315 PF12801 4Fe-4S binding domain ALFP_RS11315 PF13746 4Fe-4S dicluster domain ALFP_RS11320 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS11320 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ALFP_RS11335 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_RS11345 PF00403 Heavy-metal-associated domain ALFP_RS11350 PF00463 Isocitrate lyase family ALFP_RS11355 PF14489 QueF-like protein ALFP_RS11355 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ALFP_RS11365 PF01066 CDP-alcohol phosphatidyltransferase ALFP_RS11370 PF01541 GIY-YIG catalytic domain ALFP_RS11370 PF02151 UvrB/uvrC motif ALFP_RS11370 PF08459 UvrC Helix-hairpin-helix N-terminal ALFP_RS11375 PF00933 Glycosyl hydrolase family 3 N terminal domain ALFP_RS11380 PF01648 4'-phosphopantetheinyl transferase superfamily ALFP_RS11385 PF00501 AMP-binding enzyme ALFP_RS11385 PF14535 AMP-binding enzyme C-terminal domain ALFP_RS11390 PF03061 Thioesterase superfamily ALFP_RS11395 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS11400 PF00171 Aldehyde dehydrogenase family ALFP_RS11405 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS11405 PF00970 Oxidoreductase FAD-binding domain ALFP_RS11405 PF00175 Oxidoreductase NAD-binding domain ALFP_RS11410 PF01883 Iron-sulfur cluster assembly protein ALFP_RS11415 PF05138 Phenylacetic acid catabolic protein ALFP_RS11420 PF06243 Phenylacetic acid degradation B ALFP_RS11425 PF05138 Phenylacetic acid catabolic protein ALFP_RS11430 PF00929 Exonuclease ALFP_RS11435 PF16491 CAAX prenyl protease N-terminal, five membrane helices ALFP_RS11435 PF01435 Peptidase family M48 ALFP_RS11440 PF03193 RsgA GTPase ALFP_RS11450 PF01245 Ribosomal protein L19 ALFP_RS11460 PF03099 Biotin/lipoate A/B protein ligase family ALFP_RS11460 PF10437 Bacterial lipoate protein ligase C-terminus ALFP_RS11470 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALFP_RS11470 PF00578 AhpC/TSA family ALFP_RS11475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_RS11475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS11475 PF12806 Acetyl-CoA dehydrogenase C-terminal like ALFP_RS11475 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_RS11480 PF00766 Electron transfer flavoprotein FAD-binding domain ALFP_RS11480 PF01012 Electron transfer flavoprotein domain ALFP_RS11485 PF01012 Electron transfer flavoprotein domain ALFP_RS11490 PF00850 Histone deacetylase domain ALFP_RS11495 PF13406 Transglycosylase SLT domain ALFP_RS11500 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_RS11505 PF10531 SLBB domain ALFP_RS11510 PF01370 NAD dependent epimerase/dehydratase family ALFP_RS11515 PF00294 pfkB family carbohydrate kinase ALFP_RS11520 PF18073 Rubredoxin metal binding domain ALFP_RS11530 PF00216 Bacterial DNA-binding protein ALFP_RS11535 PF00575 S1 RNA binding domain ALFP_RS11540 PF02224 Cytidylate kinase ALFP_RS11545 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALFP_RS11550 PF02153 Prephenate dehydrogenase ALFP_RS11555 PF00800 Prephenate dehydratase ALFP_RS11555 PF01817 Chorismate mutase type II ALFP_RS11555 PF01842 ACT domain ALFP_RS11560 PF00266 Aminotransferase class-V ALFP_RS11565 PF03989 DNA gyrase C-terminal domain, beta-propeller ALFP_RS11565 PF00521 DNA gyrase/topoisomerase IV, subunit A ALFP_RS11570 PF00691 OmpA family ALFP_RS11580 PF13419 Haloacid dehalogenase-like hydrolase ALFP_RS11585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS11585 PF03466 LysR substrate binding domain ALFP_RS11590 PF07690 Major Facilitator Superfamily ALFP_RS11595 PF00037 4Fe-4S binding domain ALFP_RS11595 PF11953 Domain of unknown function (DUF3470) ALFP_RS11605 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS11605 PF00593 TonB dependent receptor ALFP_RS11620 PF00199 Catalase ALFP_RS11620 PF18011 C-terminal domain found in long catalases ALFP_RS11620 PF06628 Catalase-related immune-responsive ALFP_RS11630 PF08713 DNA alkylation repair enzyme ALFP_RS11640 PF00155 Aminotransferase class I and II ALFP_RS11645 PF03466 LysR substrate binding domain ALFP_RS11645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS11650 PF01042 Endoribonuclease L-PSP ALFP_RS11655 PF00440 Bacterial regulatory proteins, tetR family ALFP_RS11675 PF01810 LysE type translocator ALFP_RS11680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS11680 PF03466 LysR substrate binding domain ALFP_RS11685 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS11685 PF00155 Aminotransferase class I and II ALFP_RS11710 PF00043 Glutathione S-transferase, C-terminal domain ALFP_RS11710 PF02798 Glutathione S-transferase, N-terminal domain ALFP_RS11740 PF04851 Type III restriction enzyme, res subunit ALFP_RS11740 PF08463 EcoEI R protein C-terminal ALFP_RS11740 PF00271 Helicase conserved C-terminal domain ALFP_RS11740 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ALFP_RS11755 PF02384 N-6 DNA Methylase ALFP_RS11755 PF12161 HsdM N-terminal domain ALFP_RS11765 PF09299 Mu transposase, C-terminal ALFP_RS11765 PF00665 Integrase core domain ALFP_RS11785 PF00375 Sodium:dicarboxylate symporter family ALFP_RS11790 PF01810 LysE type translocator ALFP_RS11810 PF00474 Sodium:solute symporter family ALFP_RS11815 PF00072 Response regulator receiver domain ALFP_RS11815 PF00196 Bacterial regulatory proteins, luxR family ALFP_RS11820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS11820 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS11820 PF00989 PAS fold ALFP_RS11820 PF16736 Single Cache-like ALFP_RS11830 PF01747 ATP-sulfurylase ALFP_RS11830 PF14306 PUA-like domain ALFP_RS11835 PF17284 Spermidine synthase tetramerisation domain ALFP_RS11840 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS11840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS11840 PF08521 Two-component sensor kinase N-terminal ALFP_RS11845 PF00072 Response regulator receiver domain ALFP_RS11845 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS11850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALFP_RS11850 PF08447 PAS fold ALFP_RS11855 PF01169 Uncharacterized protein family UPF0016 ALFP_RS11865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS11865 PF03466 LysR substrate binding domain ALFP_RS11870 PF02525 Flavodoxin-like fold ALFP_RS11875 PF00925 GTP cyclohydrolase II ALFP_RS11890 PF03109 ABC1 family ALFP_RS11895 PF04228 Putative neutral zinc metallopeptidase ALFP_RS11910 PF02668 Taurine catabolism dioxygenase TauD, TfdA family ALFP_RS11915 PF01047 MarR family ALFP_RS11925 PF00543 Nitrogen regulatory protein P-II ALFP_RS11930 PF00909 Ammonium Transporter Family ALFP_RS11935 PF01322 Cytochrome C' ALFP_RS11940 PF08328 Adenylosuccinate lyase C-terminal ALFP_RS11940 PF00206 Lyase ALFP_RS11945 PF13417 Glutathione S-transferase, N-terminal domain ALFP_RS11945 PF00043 Glutathione S-transferase, C-terminal domain ALFP_RS11955 PF07859 alpha/beta hydrolase fold ALFP_RS11960 PF01925 Sulfite exporter TauE/SafE ALFP_RS11970 PF01565 FAD binding domain ALFP_RS11970 PF02913 FAD linked oxidases, C-terminal domain ALFP_RS11975 PF00793 DAHP synthetase I family ALFP_RS11980 PF04328 Selenoprotein, putative ALFP_RS11985 PF13722 5TM C-terminal transporter carbon starvation CstA ALFP_RS11985 PF02554 Carbon starvation protein CstA ALFP_RS11990 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_RS11995 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS12000 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS12005 PF00005 ABC transporter ALFP_RS12010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_RS12010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_RS12010 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_RS12015 PF00171 Aldehyde dehydrogenase family ALFP_RS12020 PF01958 Domain of unknown function DUF108 ALFP_RS12020 PF03447 Homoserine dehydrogenase, NAD binding domain ALFP_RS12030 PF08241 Methyltransferase domain ALFP_RS12030 PF12697 Alpha/beta hydrolase family ALFP_RS12035 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS12040 PF00005 ABC transporter ALFP_RS12055 PF13609 Gram-negative porin ALFP_RS12060 PF09339 IclR helix-turn-helix domain ALFP_RS12060 PF01614 Bacterial transcriptional regulator ALFP_RS12070 PF05721 Phytanoyl-CoA dioxygenase (PhyH) ALFP_RS12075 PF06339 Ectoine synthase ALFP_RS12080 PF00202 Aminotransferase class-III ALFP_RS12085 PF00583 Acetyltransferase (GNAT) family ALFP_RS12090 PF01047 MarR family ALFP_RS12095 PF00892 EamA-like transporter family ALFP_RS12100 PF01523 Putative modulator of DNA gyrase ALFP_RS12105 PF00816 H-NS histone family ALFP_RS12115 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ALFP_RS12115 PF11940 Domain of unknown function (DUF3458) Ig-like fold ALFP_RS12115 PF01433 Peptidase family M1 domain ALFP_RS12120 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ALFP_RS12125 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_RS12125 PF00107 Zinc-binding dehydrogenase ALFP_RS12135 PF00180 Isocitrate/isopropylmalate dehydrogenase ALFP_RS12140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_RS12145 PF05872 Bacterial protein of unknown function (DUF853) ALFP_RS12150 PF01709 Transcriptional regulator ALFP_RS12155 PF02844 Phosphoribosylglycinamide synthetase, N domain ALFP_RS12155 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ALFP_RS12155 PF02843 Phosphoribosylglycinamide synthetase, C domain ALFP_RS12160 PF01218 Coproporphyrinogen III oxidase ALFP_RS12165 PF01467 Cytidylyltransferase-like ALFP_RS12175 PF02590 Predicted SPOUT methyltransferase ALFP_RS12180 PF02545 Maf-like protein ALFP_RS12185 PF13098 Thioredoxin-like domain ALFP_RS12200 PF01253 Translation initiation factor SUI1 ALFP_RS12210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_RS12210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_RS12215 PF14497 Glutathione S-transferase, C-terminal domain ALFP_RS12215 PF02798 Glutathione S-transferase, N-terminal domain ALFP_RS12220 PF02401 LytB protein ALFP_RS12225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALFP_RS12230 PF04002 RadC-like JAB domain ALFP_RS12235 PF01418 Helix-turn-helix domain, rpiR family ALFP_RS12235 PF01380 SIS domain ALFP_RS12240 PF00083 Sugar (and other) transporter ALFP_RS12250 PF07690 Major Facilitator Superfamily ALFP_RS12255 PF01197 Ribosomal protein L31 ALFP_RS12265 PF01554 MatE ALFP_RS12270 PF00005 ABC transporter ALFP_RS12270 PF00571 CBS domain ALFP_RS12275 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS12295 PF07690 Major Facilitator Superfamily ALFP_RS12300 PF00830 Ribosomal L28 family ALFP_RS12305 PF00471 Ribosomal protein L33 ALFP_RS12310 PF13603 Leucyl-tRNA synthetase, Domain 2 ALFP_RS12310 PF08264 Anticodon-binding domain of tRNA ALFP_RS12310 PF00133 tRNA synthetases class I (I, L, M and V) ALFP_RS12310 PF09334 tRNA synthetases class I (M) ALFP_RS12320 PF06144 DNA polymerase III, delta subunit ALFP_RS12320 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ALFP_RS12325 PF00171 Aldehyde dehydrogenase family ALFP_RS12330 PF03653 Uncharacterised protein family (UPF0093) ALFP_RS12335 PF02926 THUMP domain ALFP_RS12335 PF01170 Putative RNA methylase family UPF0020 ALFP_RS12345 PF01430 Hsp33 protein ALFP_RS12355 PF04977 Septum formation initiator ALFP_RS12360 PF03952 Enolase, N-terminal domain ALFP_RS12360 PF00113 Enolase, C-terminal TIM barrel domain ALFP_RS12370 PF07690 Major Facilitator Superfamily ALFP_RS12385 PF00793 DAHP synthetase I family ALFP_RS12390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_RS12395 PF00117 Glutamine amidotransferase class-I ALFP_RS12395 PF06418 CTP synthase N-terminus ALFP_RS12400 PF01321 Creatinase/Prolidase N-terminal domain ALFP_RS12400 PF00557 Metallopeptidase family M24 ALFP_RS12405 PF01144 Coenzyme A transferase ALFP_RS12410 PF01144 Coenzyme A transferase ALFP_RS12425 PF00892 EamA-like transporter family ALFP_RS12430 PF16177 Acetyl-coenzyme A synthetase N-terminus ALFP_RS12430 PF00501 AMP-binding enzyme ALFP_RS12430 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS12440 PF00877 NlpC/P60 family ALFP_RS12450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS12450 PF03466 LysR substrate binding domain ALFP_RS12455 PF00171 Aldehyde dehydrogenase family ALFP_RS12460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS12460 PF03466 LysR substrate binding domain ALFP_RS12470 PF02789 Cytosol aminopeptidase family, N-terminal domain ALFP_RS12470 PF00883 Cytosol aminopeptidase family, catalytic domain ALFP_RS12480 PF01027 Inhibitor of apoptosis-promoting Bax1 ALFP_RS12485 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_RS12500 PF11967 Recombination protein O N terminal ALFP_RS12500 PF02565 Recombination protein O C terminal ALFP_RS12505 PF01926 50S ribosome-binding GTPase ALFP_RS12505 PF07650 KH domain ALFP_RS12510 PF14622 Ribonuclease-III-like ALFP_RS12510 PF00035 Double-stranded RNA binding motif ALFP_RS12515 PF10502 Signal peptidase, peptidase S26 ALFP_RS12520 PF06421 GTP-binding protein LepA C-terminus ALFP_RS12520 PF03144 Elongation factor Tu domain 2 ALFP_RS12520 PF00009 Elongation factor Tu GTP binding domain ALFP_RS12520 PF00679 Elongation factor G C-terminus ALFP_RS12525 PF13180 PDZ domain ALFP_RS12540 PF04542 Sigma-70 region 2 ALFP_RS12540 PF08281 Sigma-70, region 4 ALFP_RS12550 PF00109 Beta-ketoacyl synthase, N-terminal domain ALFP_RS12550 PF02801 Beta-ketoacyl synthase, C-terminal domain ALFP_RS12555 PF00550 Phosphopantetheine attachment site ALFP_RS12565 PF00698 Acyl transferase domain ALFP_RS12570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALFP_RS12570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALFP_RS12575 PF02504 Fatty acid synthesis protein ALFP_RS12580 PF01783 Ribosomal L32p protein family ALFP_RS12585 PF02620 Large ribosomal RNA subunit accumulation protein YceD ALFP_RS12590 PF02545 Maf-like protein ALFP_RS12595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_RS12600 PF01510 N-acetylmuramoyl-L-alanine amidase ALFP_RS12605 PF01794 Ferric reductase like transmembrane component ALFP_RS12610 PF00174 Oxidoreductase molybdopterin binding domain ALFP_RS12615 PF13419 Haloacid dehalogenase-like hydrolase ALFP_RS12620 PF01479 S4 domain ALFP_RS12620 PF00849 RNA pseudouridylate synthase ALFP_RS12625 PF00575 S1 RNA binding domain ALFP_RS12625 PF10150 Ribonuclease E/G family ALFP_RS12625 PF12111 Polyribonucleotide phosphorylase C terminal ALFP_RS12630 PF01039 Carboxyl transferase domain ALFP_RS12630 PF17848 Acetyl-coA carboxylase zinc finger domain ALFP_RS12635 PF00290 Tryptophan synthase alpha chain ALFP_RS12640 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_RS12645 PF13291 ACT domain ALFP_RS12645 PF04607 Region found in RelA / SpoT proteins ALFP_RS12645 PF02824 TGS domain ALFP_RS12655 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ALFP_RS12655 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ALFP_RS12660 PF00037 4Fe-4S binding domain ALFP_RS12660 PF11953 Domain of unknown function (DUF3470) ALFP_RS12670 PF04060 Putative Fe-S cluster ALFP_RS12675 PF00633 Helix-hairpin-helix motif ALFP_RS12675 PF10576 Iron-sulfur binding domain of endonuclease III ALFP_RS12675 PF00730 HhH-GPD superfamily base excision DNA repair protein ALFP_RS12680 PF00005 ABC transporter ALFP_RS12680 PF00664 ABC transporter transmembrane region ALFP_RS12685 PF03922 OmpW family ALFP_RS12690 PF00005 ABC transporter ALFP_RS12695 PF00005 ABC transporter ALFP_RS12695 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_RS12710 PF01641 SelR domain ALFP_RS12715 PF04279 Intracellular septation protein A ALFP_RS12730 PF12826 Helix-hairpin-helix motif ALFP_RS12730 PF00533 BRCA1 C Terminus (BRCT) domain ALFP_RS12730 PF01653 NAD-dependent DNA ligase adenylation domain ALFP_RS12730 PF03120 NAD-dependent DNA ligase OB-fold domain ALFP_RS12730 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ALFP_RS12740 PF06470 SMC proteins Flexible Hinge Domain ALFP_RS12740 PF02463 RecF/RecN/SMC N terminal domain ALFP_RS12745 PF07690 Major Facilitator Superfamily ALFP_RS12750 PF03167 Uracil DNA glycosylase superfamily ALFP_RS12755 PF00814 Glycoprotease family ALFP_RS12760 PF00072 Response regulator receiver domain ALFP_RS12760 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS12765 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS12765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS12765 PF00672 HAMP domain ALFP_RS12770 PF02542 YgbB family ALFP_RS12775 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ALFP_RS12780 PF02559 CarD-like/TRCF domain ALFP_RS12780 PF00270 DEAD/DEAH box helicase ALFP_RS12780 PF00271 Helicase conserved C-terminal domain ALFP_RS12780 PF03461 TRCF domain ALFP_RS12780 PF17757 UvrB interaction domain ALFP_RS12790 PF03060 Nitronate monooxygenase ALFP_RS12800 PF00361 Proton-conducting membrane transporter ALFP_RS12805 PF00361 Proton-conducting membrane transporter ALFP_RS12805 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ALFP_RS12810 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALFP_RS12810 PF00361 Proton-conducting membrane transporter ALFP_RS12815 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALFP_RS12820 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ALFP_RS12825 PF12838 4Fe-4S dicluster domain ALFP_RS12830 PF00146 NADH dehydrogenase ALFP_RS12835 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ALFP_RS12835 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALFP_RS12835 PF00384 Molybdopterin oxidoreductase ALFP_RS12840 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALFP_RS12840 PF10531 SLBB domain ALFP_RS12840 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALFP_RS12850 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ALFP_RS12855 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ALFP_RS12860 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALFP_RS12865 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ALFP_RS12870 PF13609 Gram-negative porin ALFP_RS12880 PF03840 Preprotein translocase SecG subunit ALFP_RS12885 PF00121 Triosephosphate isomerase ALFP_RS12890 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_RS12890 PF00107 Zinc-binding dehydrogenase ALFP_RS12905 PF07969 Amidohydrolase family ALFP_RS12910 PF00575 S1 RNA binding domain ALFP_RS12910 PF00013 KH domain ALFP_RS12910 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ALFP_RS12910 PF01138 3' exoribonuclease family, domain 1 ALFP_RS12910 PF03725 3' exoribonuclease family, domain 2 ALFP_RS12915 PF00312 Ribosomal protein S15 ALFP_RS12920 PF01066 CDP-alcohol phosphatidyltransferase ALFP_RS12925 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ALFP_RS12925 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALFP_RS12930 PF10369 Small subunit of acetolactate synthase ALFP_RS12935 PF00205 Thiamine pyrophosphate enzyme, central domain ALFP_RS12935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALFP_RS12935 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALFP_RS12940 PF12805 FUSC-like inner membrane protein yccS ALFP_RS12945 PF03883 Peroxide stress protein YaaA ALFP_RS12975 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALFP_RS12975 PF02403 Seryl-tRNA synthetase N-terminal domain ALFP_RS12980 PF16193 AAA C-terminal domain ALFP_RS12980 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_RS12980 PF12002 MgsA AAA+ ATPase C terminal ALFP_RS12985 PF03548 Outer membrane lipoprotein carrier protein LolA ALFP_RS12990 PF01580 FtsK/SpoIIIE family ALFP_RS12990 PF09397 Ftsk gamma domain ALFP_RS12990 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ALFP_RS12990 PF17854 FtsK alpha domain ALFP_RS12995 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS13015 PF07690 Major Facilitator Superfamily ALFP_RS13035 PF00135 Carboxylesterase family ALFP_RS13040 PF08028 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS13040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_RS13045 PF00180 Isocitrate/isopropylmalate dehydrogenase ALFP_RS13060 PF00034 Cytochrome c ALFP_RS13065 PF01434 Peptidase family M41 ALFP_RS13065 PF17862 AAA+ lid domain ALFP_RS13065 PF00004 ATPase family associated with various cellular activities (AAA) ALFP_RS13085 PF00158 Sigma-54 interaction domain ALFP_RS13085 PF00072 Response regulator receiver domain ALFP_RS13085 PF02954 Bacterial regulatory protein, Fis family ALFP_RS13115 PF00437 Type II/IV secretion system protein ALFP_RS13125 PF00263 Bacterial type II and III secretion system protein ALFP_RS13125 PF04972 BON domain ALFP_RS13125 PF13629 Pilus formation protein N terminal region ALFP_RS13155 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ALFP_RS13155 PF08479 POTRA domain, ShlB-type ALFP_RS13185 PF05193 Peptidase M16 inactive domain ALFP_RS13185 PF00675 Insulinase (Peptidase family M16) ALFP_RS13190 PF00684 DnaJ central domain ALFP_RS13190 PF01556 DnaJ C terminal domain ALFP_RS13190 PF00226 DnaJ domain ALFP_RS13195 PF00012 Hsp70 protein ALFP_RS13200 PF01025 GrpE ALFP_RS13205 PF00762 Ferrochelatase ALFP_RS13210 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ALFP_RS13210 PF01628 HrcA protein C terminal domain ALFP_RS13215 PF01513 ATP-NAD kinase ALFP_RS13220 PF02463 RecF/RecN/SMC N terminal domain ALFP_RS13225 PF01475 Ferric uptake regulator family ALFP_RS13230 PF04355 SmpA / OmlA family ALFP_RS13235 PF05173 Dihydrodipicolinate reductase, C-terminus ALFP_RS13235 PF01113 Dihydrodipicolinate reductase, N-terminus ALFP_RS13250 PF00561 alpha/beta hydrolase fold ALFP_RS13255 PF00465 Iron-containing alcohol dehydrogenase ALFP_RS13260 PF07690 Major Facilitator Superfamily ALFP_RS13270 PF01565 FAD binding domain ALFP_RS13270 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ALFP_RS13290 PF00732 GMC oxidoreductase ALFP_RS13290 PF05199 GMC oxidoreductase ALFP_RS13305 PF02321 Outer membrane efflux protein ALFP_RS13310 PF13533 Biotin-lipoyl like ALFP_RS13330 PF00593 TonB dependent receptor ALFP_RS13330 PF07660 Secretin and TonB N terminus short domain ALFP_RS13330 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS13335 PF07690 Major Facilitator Superfamily ALFP_RS13350 PF00756 Putative esterase ALFP_RS13370 PF00465 Iron-containing alcohol dehydrogenase ALFP_RS13375 PF00005 ABC transporter ALFP_RS13380 PF09383 NIL domain ALFP_RS13380 PF00005 ABC transporter ALFP_RS13390 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS13400 PF00171 Aldehyde dehydrogenase family ALFP_RS13405 PF09339 IclR helix-turn-helix domain ALFP_RS13405 PF01614 Bacterial transcriptional regulator ALFP_RS13410 PF03880 DbpA RNA binding domain ALFP_RS13410 PF00270 DEAD/DEAH box helicase ALFP_RS13410 PF00271 Helicase conserved C-terminal domain ALFP_RS13415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS13415 PF03466 LysR substrate binding domain ALFP_RS13420 PF00355 Rieske [2Fe-2S] domain ALFP_RS13420 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_RS13425 PF00866 Ring hydroxylating beta subunit ALFP_RS13430 PF00355 Rieske [2Fe-2S] domain ALFP_RS13435 PF00106 short chain dehydrogenase ALFP_RS13440 PF14759 Reductase C-terminal ALFP_RS13440 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS13445 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ALFP_RS13450 PF12697 Alpha/beta hydrolase family ALFP_RS13455 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_RS13460 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALFP_RS13460 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation ALFP_RS13465 PF00682 HMGL-like ALFP_RS13465 PF07836 DmpG-like communication domain ALFP_RS13470 PF07690 Major Facilitator Superfamily ALFP_RS13485 PF01425 Amidase ALFP_RS13490 PF00155 Aminotransferase class I and II ALFP_RS13490 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS13495 PF07690 Major Facilitator Superfamily ALFP_RS13510 PF11339 Protein of unknown function (DUF3141) ALFP_RS13515 PF02803 Thiolase, C-terminal domain ALFP_RS13515 PF00108 Thiolase, N-terminal domain ALFP_RS13520 PF00106 short chain dehydrogenase ALFP_RS13535 PF00005 ABC transporter ALFP_RS13540 PF13533 Biotin-lipoyl like ALFP_RS13545 PF02321 Outer membrane efflux protein ALFP_RS13550 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ALFP_RS13550 PF00561 alpha/beta hydrolase fold ALFP_RS13560 PF02592 Putative vitamin uptake transporter ALFP_RS13565 PF06508 Queuosine biosynthesis protein QueC ALFP_RS13570 PF00464 Serine hydroxymethyltransferase ALFP_RS13575 PF00266 Aminotransferase class-V ALFP_RS13580 PF00155 Aminotransferase class I and II ALFP_RS13580 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS13585 PF00464 Serine hydroxymethyltransferase ALFP_RS13600 PF00117 Glutamine amidotransferase class-I ALFP_RS13605 PF08543 Phosphomethylpyrimidine kinase ALFP_RS13610 PF02028 BCCT, betaine/carnitine/choline family transporter ALFP_RS13615 PF00376 MerR family regulatory protein ALFP_RS13615 PF09278 MerR, DNA binding ALFP_RS13630 PF00873 AcrB/AcrD/AcrF family ALFP_RS13655 PF02293 AmiS/UreI family transporter ALFP_RS13675 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_RS13680 PF00155 Aminotransferase class I and II ALFP_RS13680 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS13690 PF03466 LysR substrate binding domain ALFP_RS13690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS13695 PF00202 Aminotransferase class-III ALFP_RS13700 PF01177 Asp/Glu/Hydantoin racemase ALFP_RS13705 PF01548 Transposase ALFP_RS13705 PF02371 Transposase IS116/IS110/IS902 family ALFP_RS13720 PF05506 Domain of unknown function (DUF756) ALFP_RS13720 PF04185 Phosphoesterase family ALFP_RS13735 PF01389 OmpA-like transmembrane domain ALFP_RS13735 PF00691 OmpA family ALFP_RS13740 PF05662 Coiled stalk of trimeric autotransporter adhesin ALFP_RS13740 PF13018 Extended Signal Peptide of Type V secretion system ALFP_RS13740 PF03895 YadA-like membrane anchor domain ALFP_RS13740 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin ALFP_RS13750 PF00239 Resolvase, N terminal domain ALFP_RS13750 PF02796 Helix-turn-helix domain of resolvase ALFP_RS13755 PF00482 Type II secretion system (T2SS), protein F ALFP_RS13760 PF00437 Type II/IV secretion system protein ALFP_RS13765 PF00263 Bacterial type II and III secretion system protein ALFP_RS13765 PF03958 Bacterial type II/III secretion system short domain ALFP_RS13790 PF11612 Type II secretion system (T2SS), protein J ALFP_RS13790 PF07963 Prokaryotic N-terminal methylation motif ALFP_RS13795 PF07963 Prokaryotic N-terminal methylation motif ALFP_RS13795 PF02501 Type II secretion system (T2SS), protein I ALFP_RS13805 PF08334 Type II secretion system (T2SS), protein G ALFP_RS13805 PF07963 Prokaryotic N-terminal methylation motif ALFP_RS13815 PF00571 CBS domain ALFP_RS13815 PF00478 IMP dehydrogenase / GMP reductase domain ALFP_RS13820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALFP_RS13830 PF00206 Lyase ALFP_RS13830 PF10415 Fumarase C C-terminus ALFP_RS13835 PF01047 MarR family ALFP_RS13850 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALFP_RS13855 PF04376 Arginine-tRNA-protein transferase, N terminus ALFP_RS13855 PF04377 Arginine-tRNA-protein transferase, C terminus ALFP_RS13860 PF01180 Dihydroorotate dehydrogenase ALFP_RS13875 PF01614 Bacterial transcriptional regulator ALFP_RS13875 PF09339 IclR helix-turn-helix domain ALFP_RS13895 PF00270 DEAD/DEAH box helicase ALFP_RS13895 PF00271 Helicase conserved C-terminal domain ALFP_RS13915 PF00561 alpha/beta hydrolase fold ALFP_RS13920 PF01435 Peptidase family M48 ALFP_RS13940 PF01494 FAD binding domain ALFP_RS13945 PF01207 Dihydrouridine synthase (Dus) ALFP_RS13950 PF02954 Bacterial regulatory protein, Fis family ALFP_RS13955 PF01808 AICARFT/IMPCHase bienzyme ALFP_RS13955 PF02142 MGS-like domain ALFP_RS13960 PF02075 Crossover junction endodeoxyribonuclease RuvC ALFP_RS13965 PF01330 RuvA N terminal domain ALFP_RS13965 PF07499 RuvA, C-terminal domain ALFP_RS13970 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_RS13975 PF17864 RuvB AAA lid domain ALFP_RS13975 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALFP_RS13975 PF05491 RuvB C-terminal winged helix domain ALFP_RS13985 PF01979 Amidohydrolase family ALFP_RS13995 PF03441 FAD binding domain of DNA photolyase ALFP_RS13995 PF00875 DNA photolyase ALFP_RS14040 PF00581 Rhodanese-like domain ALFP_RS14045 PF04143 Sulphur transport ALFP_RS14055 PF01625 Peptide methionine sulfoxide reductase ALFP_RS14060 PF00034 Cytochrome c ALFP_RS14065 PF01790 Prolipoprotein diacylglyceryl transferase ALFP_RS14090 PF01970 Tripartite tricarboxylate transporter TctA family ALFP_RS14095 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS14100 PF00005 ABC transporter ALFP_RS14100 PF08402 TOBE domain ALFP_RS14110 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_RS14110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_RS14115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS14115 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS14120 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS14120 PF00072 Response regulator receiver domain ALFP_RS14125 PF00293 NUDIX domain ALFP_RS14130 PF03129 Anticodon binding domain ALFP_RS14130 PF04073 Aminoacyl-tRNA editing domain ALFP_RS14130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALFP_RS14135 PF03061 Thioesterase superfamily ALFP_RS14140 PF01618 MotA/TolQ/ExbB proton channel family ALFP_RS14145 PF02472 Biopolymer transport protein ExbD/TolR ALFP_RS14155 PF07676 WD40-like Beta Propeller Repeat ALFP_RS14155 PF04052 TolB amino-terminal domain ALFP_RS14160 PF00691 OmpA family ALFP_RS14170 PF00561 alpha/beta hydrolase fold ALFP_RS14185 PF01554 MatE ALFP_RS14190 PF02608 ABC transporter substrate-binding protein PnrA-like ALFP_RS14195 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS14200 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS14205 PF00005 ABC transporter ALFP_RS14215 PF01113 Dihydrodipicolinate reductase, N-terminus ALFP_RS14215 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ALFP_RS14220 PF01810 LysE type translocator ALFP_RS14225 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ALFP_RS14225 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ALFP_RS14230 PF03466 LysR substrate binding domain ALFP_RS14230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS14235 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS14235 PF13192 Thioredoxin domain ALFP_RS14240 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALFP_RS14240 PF00578 AhpC/TSA family ALFP_RS14245 PF00155 Aminotransferase class I and II ALFP_RS14250 PF00892 EamA-like transporter family ALFP_RS14255 PF01507 Phosphoadenosine phosphosulfate reductase family ALFP_RS14260 PF01507 Phosphoadenosine phosphosulfate reductase family ALFP_RS14265 PF00009 Elongation factor Tu GTP binding domain ALFP_RS14270 PF00324 Amino acid permease ALFP_RS14275 PF00171 Aldehyde dehydrogenase family ALFP_RS14280 PF01266 FAD dependent oxidoreductase ALFP_RS14285 PF07063 Domain of unknown function (DUF1338) ALFP_RS14290 PF03466 LysR substrate binding domain ALFP_RS14290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS14295 PF00871 Acetokinase family ALFP_RS14300 PF01515 Phosphate acetyl/butaryl transferase ALFP_RS14310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS14310 PF03466 LysR substrate binding domain ALFP_RS14315 PF02678 Pirin ALFP_RS14315 PF17954 Quercetinase C-terminal cupin domain ALFP_RS14325 PF17158 Membrane-associated sensor, integral membrane domain ALFP_RS14325 PF00990 Diguanylate cyclase, GGDEF domain ALFP_RS14330 PF01425 Amidase ALFP_RS14340 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase ALFP_RS14345 PF00166 Chaperonin 10 Kd subunit ALFP_RS14350 PF00118 TCP-1/cpn60 chaperonin family ALFP_RS14355 PF01219 Prokaryotic diacylglycerol kinase ALFP_RS14360 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ALFP_RS14365 PF02515 CoA-transferase family III ALFP_RS14370 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS14375 PF01614 Bacterial transcriptional regulator ALFP_RS14375 PF09339 IclR helix-turn-helix domain ALFP_RS14380 PF02464 Competence-damaged protein ALFP_RS14385 PF04608 Phosphatidylglycerophosphatase A ALFP_RS14390 PF02769 AIR synthase related protein, C-terminal domain ALFP_RS14390 PF00586 AIR synthase related protein, N-terminal domain ALFP_RS14395 PF01029 NusB family ALFP_RS14400 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALFP_RS14405 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ALFP_RS14405 PF00925 GTP cyclohydrolase II ALFP_RS14420 PF02881 SRP54-type protein, helical bundle domain ALFP_RS14420 PF00448 SRP54-type protein, GTPase domain ALFP_RS14430 PF01467 Cytidylyltransferase-like ALFP_RS14435 PF00037 4Fe-4S binding domain ALFP_RS14450 PF01053 Cys/Met metabolism PLP-dependent enzyme ALFP_RS14460 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALFP_RS14465 PF07238 PilZ domain ALFP_RS14465 PF07317 Flagellar regulator YcgR ALFP_RS14480 PF00857 Isochorismatase family ALFP_RS14490 PF00561 alpha/beta hydrolase fold ALFP_RS14495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS14495 PF00034 Cytochrome c ALFP_RS14495 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_RS14500 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS14500 PF01799 [2Fe-2S] binding domain ALFP_RS14505 PF00034 Cytochrome c ALFP_RS14505 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_RS14505 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS14515 PF00005 ABC transporter ALFP_RS14520 PF00005 ABC transporter ALFP_RS14520 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_RS14530 PF13458 Periplasmic binding protein ALFP_RS14540 PF01804 Penicillin amidase ALFP_RS14545 PF00990 Diguanylate cyclase, GGDEF domain ALFP_RS14545 PF17158 Membrane-associated sensor, integral membrane domain ALFP_RS14550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS14550 PF03466 LysR substrate binding domain ALFP_RS14555 PF00884 Sulfatase ALFP_RS14555 PF16347 Domain of unknown function (DUF4976) ALFP_RS14560 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS14575 PF12706 Beta-lactamase superfamily domain ALFP_RS14575 PF00753 Metallo-beta-lactamase superfamily ALFP_RS14580 PF07702 UTRA domain ALFP_RS14580 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS14590 PF13091 PLD-like domain ALFP_RS14600 PF01256 Carbohydrate kinase ALFP_RS14600 PF03853 YjeF-related protein N-terminus ALFP_RS14605 PF13478 XdhC Rossmann domain ALFP_RS14605 PF02625 XdhC and CoxI family ALFP_RS14610 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS14620 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS14625 PF00005 ABC transporter ALFP_RS14635 PF01799 [2Fe-2S] binding domain ALFP_RS14635 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS14640 PF00941 FAD binding domain in molybdopterin dehydrogenase ALFP_RS14640 PF03450 CO dehydrogenase flavoprotein C-terminal domain ALFP_RS14645 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_RS14645 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_RS14650 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS14655 PF00355 Rieske [2Fe-2S] domain ALFP_RS14660 PF14759 Reductase C-terminal ALFP_RS14660 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALFP_RS14665 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_RS14665 PF00355 Rieske [2Fe-2S] domain ALFP_RS14680 PF00857 Isochorismatase family ALFP_RS14690 PF00561 alpha/beta hydrolase fold ALFP_RS14700 PF01047 MarR family ALFP_RS14705 PF00005 ABC transporter ALFP_RS14710 PF01032 FecCD transport family ALFP_RS14720 PF00593 TonB dependent receptor ALFP_RS14720 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS14725 PF02667 Short chain fatty acid transporter ALFP_RS14730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS14730 PF03466 LysR substrate binding domain ALFP_RS14735 PF01979 Amidohydrolase family ALFP_RS14740 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS14750 PF00929 Exonuclease ALFP_RS14755 PF00873 AcrB/AcrD/AcrF family ALFP_RS14760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALFP_RS14765 PF00075 RNase H ALFP_RS14770 PF08241 Methyltransferase domain ALFP_RS14775 PF16123 Hydroxyacylglutathione hydrolase C-terminus ALFP_RS14775 PF00753 Metallo-beta-lactamase superfamily ALFP_RS14780 PF01464 Transglycosylase SLT domain ALFP_RS14780 PF01476 LysM domain ALFP_RS14790 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS14795 PF09084 NMT1/THI5 like ALFP_RS14800 PF00941 FAD binding domain in molybdopterin dehydrogenase ALFP_RS14800 PF03450 CO dehydrogenase flavoprotein C-terminal domain ALFP_RS14805 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS14805 PF01799 [2Fe-2S] binding domain ALFP_RS14810 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALFP_RS14810 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_RS14820 PF01047 MarR family ALFP_RS14825 PF00158 Sigma-54 interaction domain ALFP_RS14825 PF00072 Response regulator receiver domain ALFP_RS14825 PF02954 Bacterial regulatory protein, Fis family ALFP_RS14830 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS14830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS14830 PF02743 Cache domain ALFP_RS14835 PF00375 Sodium:dicarboxylate symporter family ALFP_RS14845 PF17773 UPF0176 acylphosphatase like domain ALFP_RS14845 PF00581 Rhodanese-like domain ALFP_RS14870 PF04073 Aminoacyl-tRNA editing domain ALFP_RS14875 PF00072 Response regulator receiver domain ALFP_RS14875 PF02954 Bacterial regulatory protein, Fis family ALFP_RS14875 PF00158 Sigma-54 interaction domain ALFP_RS14885 PF04552 Sigma-54, DNA binding domain ALFP_RS14885 PF04963 Sigma-54 factor, core binding domain ALFP_RS14885 PF00309 Sigma-54 factor, Activator interacting domain (AID) ALFP_RS14890 PF00982 Glycosyltransferase family 20 ALFP_RS14910 PF02358 Trehalose-phosphatase ALFP_RS14925 PF05995 Cysteine dioxygenase type I ALFP_RS14930 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS14935 PF13380 CoA binding domain ALFP_RS14935 PF13607 Succinyl-CoA ligase like flavodoxin domain ALFP_RS14940 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS14945 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_RS14945 PF00107 Zinc-binding dehydrogenase ALFP_RS14950 PF02515 CoA-transferase family III ALFP_RS14955 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS14970 PF00107 Zinc-binding dehydrogenase ALFP_RS14970 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_RS14975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALFP_RS14980 PF03466 LysR substrate binding domain ALFP_RS14980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS14990 PF00465 Iron-containing alcohol dehydrogenase ALFP_RS14995 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS15000 PF00005 ABC transporter ALFP_RS15010 PF03466 LysR substrate binding domain ALFP_RS15010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS15015 PF00501 AMP-binding enzyme ALFP_RS15015 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS15030 PF03466 LysR substrate binding domain ALFP_RS15030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS15035 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_RS15045 PF02040 Arsenical pump membrane protein ALFP_RS15050 PF03960 ArsC family ALFP_RS15055 PF03358 NADPH-dependent FMN reductase ALFP_RS15060 PF00072 Response regulator receiver domain ALFP_RS15060 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS15065 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS15065 PF08521 Two-component sensor kinase N-terminal ALFP_RS15065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS15095 PF01464 Transglycosylase SLT domain ALFP_RS15110 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ALFP_RS15135 PF04335 VirB8 protein ALFP_RS15145 PF03743 Bacterial conjugation TrbI-like protein ALFP_RS15150 PF00437 Type II/IV secretion system protein ALFP_RS15180 PF05872 Bacterial protein of unknown function (DUF853) ALFP_RS15185 PF18340 DNA relaxase TraI 2B/2B-like domain ALFP_RS15185 PF08751 TrwC relaxase ALFP_RS15185 PF18272 single-stranded DNA binding TraI N-terminal subdomain ALFP_RS15185 PF07057 DNA helicase TraI ALFP_RS15195 PF01381 Helix-turn-helix ALFP_RS15200 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ALFP_RS15210 PF05721 Phytanoyl-CoA dioxygenase (PhyH) ALFP_RS15220 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS15225 PF00005 ABC transporter ALFP_RS15230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_RS15230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_RS15235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS15235 PF03466 LysR substrate binding domain ALFP_RS15240 PF13683 Integrase core domain ALFP_RS15240 PF13276 HTH-like domain ALFP_RS15250 PF00589 Phage integrase family ALFP_RS15260 PF01872 RibD C-terminal domain ALFP_RS15260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALFP_RS15265 PF03477 ATP cone domain ALFP_RS15270 PF00464 Serine hydroxymethyltransferase ALFP_RS15275 PF01161 Phosphatidylethanolamine-binding protein ALFP_RS15280 PF01479 S4 domain ALFP_RS15280 PF00579 tRNA synthetases class I (W and Y) ALFP_RS15285 PF04225 Opacity-associated protein A LysM-like domain ALFP_RS15285 PF01551 Peptidase family M23 ALFP_RS15290 PF03702 Anhydro-N-acetylmuramic acid kinase ALFP_RS15295 PF01521 Iron-sulphur cluster biosynthesis ALFP_RS15305 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALFP_RS15305 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALFP_RS15310 PF00380 Ribosomal protein S9/S16 ALFP_RS15315 PF00572 Ribosomal protein L13 ALFP_RS15320 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS15325 PF01523 Putative modulator of DNA gyrase ALFP_RS15330 PF04751 Protein of unknown function (DUF615) ALFP_RS15345 PF00690 Cation transporter/ATPase, N-terminus ALFP_RS15345 PF00689 Cation transporting ATPase, C-terminus ALFP_RS15350 PF13426 PAS domain ALFP_RS15350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS15350 PF08448 PAS fold ALFP_RS15350 PF00072 Response regulator receiver domain ALFP_RS15350 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS15355 PF00072 Response regulator receiver domain ALFP_RS15355 PF00196 Bacterial regulatory proteins, luxR family ALFP_RS15360 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALFP_RS15370 PF01979 Amidohydrolase family ALFP_RS15375 PF00860 Permease family ALFP_RS15380 PF12697 Alpha/beta hydrolase family ALFP_RS15385 PF00355 Rieske [2Fe-2S] domain ALFP_RS15395 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS15395 PF00970 Oxidoreductase FAD-binding domain ALFP_RS15400 PF03466 LysR substrate binding domain ALFP_RS15400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS15405 PF07152 YaeQ protein ALFP_RS15415 PF01037 Lrp/AsnC ligand binding domain ALFP_RS15430 PF02325 YGGT family ALFP_RS15435 PF00730 HhH-GPD superfamily base excision DNA repair protein ALFP_RS15440 PF05433 Glycine zipper 2TM domain ALFP_RS15445 PF00294 pfkB family carbohydrate kinase ALFP_RS15460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALFP_RS15460 PF00289 Biotin carboxylase, N-terminal domain ALFP_RS15460 PF02785 Biotin carboxylase C-terminal domain ALFP_RS15465 PF00364 Biotin-requiring enzyme ALFP_RS15470 PF01220 Dehydroquinase class II ALFP_RS15475 PF00578 AhpC/TSA family ALFP_RS15480 PF08245 Mur ligase middle domain ALFP_RS15480 PF02875 Mur ligase family, glutamate ligase domain ALFP_RS15480 PF01225 Mur ligase family, catalytic domain ALFP_RS15485 PF05728 Uncharacterised protein family (UPF0227) ALFP_RS15500 PF08501 Shikimate dehydrogenase substrate binding domain ALFP_RS15500 PF01488 Shikimate / quinate 5-dehydrogenase ALFP_RS15500 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ALFP_RS15505 PF00912 Transglycosylase ALFP_RS15515 PF00149 Calcineurin-like phosphoesterase ALFP_RS15520 PF01553 Acyltransferase ALFP_RS15525 PF03652 Holliday junction resolvase ALFP_RS15565 PF01960 ArgJ family ALFP_RS15575 PF05532 CsbD-like ALFP_RS15580 PF00829 Ribosomal prokaryotic L21 protein ALFP_RS15585 PF01016 Ribosomal L27 protein ALFP_RS15590 PF01018 GTP1/OBG ALFP_RS15590 PF01926 50S ribosome-binding GTPase ALFP_RS15595 PF01472 PUA domain ALFP_RS15595 PF00696 Amino acid kinase family ALFP_RS15600 PF01266 FAD dependent oxidoreductase ALFP_RS15620 PF13667 ThiC-associated domain ALFP_RS15620 PF01964 Radical SAM ThiC family ALFP_RS15625 PF05736 OprF membrane domain ALFP_RS15625 PF00691 OmpA family ALFP_RS15630 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS15635 PF00005 ABC transporter ALFP_RS15640 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS15645 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS15650 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALFP_RS15655 PF00005 ABC transporter ALFP_RS15660 PF18075 FtsX extracellular domain ALFP_RS15665 PF00730 HhH-GPD superfamily base excision DNA repair protein ALFP_RS15665 PF14815 NUDIX domain ALFP_RS15665 PF00633 Helix-hairpin-helix motif ALFP_RS15670 PF01098 Cell cycle protein ALFP_RS15675 PF03717 Penicillin-binding Protein dimerisation domain ALFP_RS15675 PF00905 Penicillin binding protein transpeptidase domain ALFP_RS15685 PF04085 rod shape-determining protein MreC ALFP_RS15695 PF02686 Glu-tRNAGln amidotransferase C subunit ALFP_RS15700 PF01425 Amidase ALFP_RS15705 PF02637 GatB domain ALFP_RS15705 PF02934 GatB/GatE catalytic domain ALFP_RS15710 PF00156 Phosphoribosyl transferase domain ALFP_RS15715 PF03466 LysR substrate binding domain ALFP_RS15715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS15720 PF07681 DoxX ALFP_RS15725 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ALFP_RS15735 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS15740 PF00394 Multicopper oxidase ALFP_RS15740 PF07732 Multicopper oxidase ALFP_RS15745 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_RS15750 PF00158 Sigma-54 interaction domain ALFP_RS15750 PF02954 Bacterial regulatory protein, Fis family ALFP_RS15765 PF03616 Sodium/glutamate symporter ALFP_RS15770 PF00348 Polyprenyl synthetase ALFP_RS15780 PF00293 NUDIX domain ALFP_RS15785 PF17284 Spermidine synthase tetramerisation domain ALFP_RS15790 PF02321 Outer membrane efflux protein ALFP_RS15795 PF00873 AcrB/AcrD/AcrF family ALFP_RS15800 PF00873 AcrB/AcrD/AcrF family ALFP_RS15805 PF13533 Biotin-lipoyl like ALFP_RS15810 PF07072 Cell division protein ALFP_RS15815 PF01121 Dephospho-CoA kinase ALFP_RS15825 PF00072 Response regulator receiver domain ALFP_RS15825 PF00196 Bacterial regulatory proteins, luxR family ALFP_RS15830 PF02569 Pantoate-beta-alanine ligase ALFP_RS15835 PF02616 Segregation and condensation protein ScpA ALFP_RS15845 PF07690 Major Facilitator Superfamily ALFP_RS15855 PF02310 B12 binding domain ALFP_RS15855 PF02607 B12 binding domain ALFP_RS15855 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALFP_RS15855 PF00809 Pterin binding enzyme ALFP_RS15855 PF02574 Homocysteine S-methyltransferase ALFP_RS15860 PF00593 TonB dependent receptor ALFP_RS15860 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS15865 PF01497 Periplasmic binding protein ALFP_RS15870 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS15870 PF00593 TonB dependent receptor ALFP_RS15870 PF07660 Secretin and TonB N terminus short domain ALFP_RS15880 PF08281 Sigma-70, region 4 ALFP_RS15880 PF04542 Sigma-70 region 2 ALFP_RS15890 PF13609 Gram-negative porin ALFP_RS15900 PF01544 CorA-like Mg2+ transporter protein ALFP_RS15910 PF01544 CorA-like Mg2+ transporter protein ALFP_RS15925 PF05690 Thiazole biosynthesis protein ThiG ALFP_RS15930 PF08543 Phosphomethylpyrimidine kinase ALFP_RS15935 PF01048 Phosphorylase superfamily ALFP_RS15945 PF02321 Outer membrane efflux protein ALFP_RS15950 PF01467 Cytidylyltransferase-like ALFP_RS15960 PF03109 ABC1 family ALFP_RS15975 PF01209 ubiE/COQ5 methyltransferase family ALFP_RS15980 PF00072 Response regulator receiver domain ALFP_RS15980 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS15985 PF11808 Phosphate regulon sensor protein PhoR ALFP_RS15985 PF00989 PAS fold ALFP_RS15985 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS15985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS15995 PF02682 Carboxyltransferase domain, subdomain C and D ALFP_RS16000 PF02626 Carboxyltransferase domain, subdomain A and B ALFP_RS16005 PF00585 C-terminal regulatory domain of Threonine dehydratase ALFP_RS16005 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_RS16010 PF09335 SNARE associated Golgi protein ALFP_RS16025 PF00082 Subtilase family ALFP_RS16025 PF03797 Autotransporter beta-domain ALFP_RS16025 PF12951 Passenger-associated-transport-repeat ALFP_RS16030 PF00156 Phosphoribosyl transferase domain ALFP_RS16035 PF00005 ABC transporter ALFP_RS16035 PF00664 ABC transporter transmembrane region ALFP_RS16040 PF00664 ABC transporter transmembrane region ALFP_RS16040 PF00005 ABC transporter ALFP_RS16045 PF08173 Membrane bound YbgT-like protein ALFP_RS16050 PF02322 Cytochrome bd terminal oxidase subunit II ALFP_RS16055 PF01654 Cytochrome bd terminal oxidase subunit I ALFP_RS16065 PF00571 CBS domain ALFP_RS16065 PF01380 SIS domain ALFP_RS16085 PF00005 ABC transporter ALFP_RS16090 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ALFP_RS16095 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ALFP_RS16100 PF02603 HPr Serine kinase N terminus ALFP_RS16100 PF07475 HPr Serine kinase C-terminal domain ALFP_RS16105 PF03668 P-loop ATPase protein family ALFP_RS16110 PF03330 Lytic transglycolase ALFP_RS16110 PF05036 Sporulation related domain ALFP_RS16115 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_RS16120 PF02021 Uncharacterised protein family UPF0102 ALFP_RS16125 PF13580 SIS domain ALFP_RS16135 PF00578 AhpC/TSA family ALFP_RS16140 PF00696 Amino acid kinase family ALFP_RS16150 PF00171 Aldehyde dehydrogenase family ALFP_RS16155 PF12833 Helix-turn-helix domain ALFP_RS16160 PF00899 ThiF family ALFP_RS16165 PF13180 PDZ domain ALFP_RS16165 PF03572 Peptidase family S41 ALFP_RS16170 PF01551 Peptidase family M23 ALFP_RS16175 PF00300 Histidine phosphatase superfamily (branch 1) ALFP_RS16180 PF00581 Rhodanese-like domain ALFP_RS16185 PF00462 Glutaredoxin ALFP_RS16190 PF02556 Preprotein translocase subunit SecB ALFP_RS16195 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ALFP_RS16195 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALFP_RS16200 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS16205 PF00588 SpoU rRNA Methylase family ALFP_RS16210 PF00156 Phosphoribosyl transferase domain ALFP_RS16215 PF08241 Methyltransferase domain ALFP_RS16220 PF00593 TonB dependent receptor ALFP_RS16220 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS16225 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS16225 PF00072 Response regulator receiver domain ALFP_RS16230 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS16230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS16235 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALFP_RS16240 PF00072 Response regulator receiver domain ALFP_RS16240 PF02954 Bacterial regulatory protein, Fis family ALFP_RS16240 PF00158 Sigma-54 interaction domain ALFP_RS16245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS16245 PF00672 HAMP domain ALFP_RS16255 PF01189 16S rRNA methyltransferase RsmB/F ALFP_RS16255 PF01029 NusB family ALFP_RS16260 PF00919 Uncharacterized protein family UPF0004 ALFP_RS16260 PF18693 TRAM domain ALFP_RS16260 PF04055 Radical SAM superfamily ALFP_RS16265 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_RS16270 PF17645 Arylmalonate decarboxylase ALFP_RS16275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS16275 PF03466 LysR substrate binding domain ALFP_RS16285 PF00005 ABC transporter ALFP_RS16290 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS16315 PF00483 Nucleotidyl transferase ALFP_RS16315 PF01050 Mannose-6-phosphate isomerase ALFP_RS16320 PF00535 Glycosyl transferase family 2 ALFP_RS16330 PF02397 Bacterial sugar transferase ALFP_RS16340 PF14667 Polysaccharide biosynthesis C-terminal domain ALFP_RS16340 PF01943 Polysaccharide biosynthesis protein ALFP_RS16345 PF16363 GDP-mannose 4,6 dehydratase ALFP_RS16350 PF00483 Nucleotidyl transferase ALFP_RS16355 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ALFP_RS16360 PF04321 RmlD substrate binding domain ALFP_RS16365 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ALFP_RS16370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_RS16370 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALFP_RS16375 PF00231 ATP synthase ALFP_RS16380 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALFP_RS16380 PF00306 ATP synthase alpha/beta chain, C terminal domain ALFP_RS16380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALFP_RS16385 PF00213 ATP synthase delta (OSCP) subunit ALFP_RS16390 PF00430 ATP synthase B/B' CF(0) ALFP_RS16395 PF00137 ATP synthase subunit C ALFP_RS16400 PF00119 ATP synthase A chain ALFP_RS16410 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS16425 PF01171 PP-loop family ALFP_RS16430 PF02441 Flavoprotein ALFP_RS16435 PF00462 Glutaredoxin ALFP_RS16440 PF05175 Methyltransferase small domain ALFP_RS16440 PF17827 PrmC N-terminal domain ALFP_RS16445 PF00472 RF-1 domain ALFP_RS16445 PF03462 PCRF domain ALFP_RS16450 PF01488 Shikimate / quinate 5-dehydrogenase ALFP_RS16450 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ALFP_RS16450 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ALFP_RS16480 PF00398 Ribosomal RNA adenine dimethylase ALFP_RS16490 PF00593 TonB dependent receptor ALFP_RS16490 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS16510 PF00474 Sodium:solute symporter family ALFP_RS16515 PF00795 Carbon-nitrogen hydrolase ALFP_RS16525 PF00080 Copper/zinc superoxide dismutase (SODC) ALFP_RS16535 PF05145 Transition state regulatory protein AbrB ALFP_RS16540 PF01970 Tripartite tricarboxylate transporter TctA family ALFP_RS16555 PF00672 HAMP domain ALFP_RS16555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS16555 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS16560 PF00072 Response regulator receiver domain ALFP_RS16560 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS16565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS16565 PF03466 LysR substrate binding domain ALFP_RS16570 PF00083 Sugar (and other) transporter ALFP_RS16570 PF08946 Osmosensory transporter coiled coil ALFP_RS16575 PF00795 Carbon-nitrogen hydrolase ALFP_RS16595 PF00005 ABC transporter ALFP_RS16620 PF00384 Molybdopterin oxidoreductase ALFP_RS16620 PF01568 Molydopterin dinucleotide binding domain ALFP_RS16620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALFP_RS16625 PF00384 Molybdopterin oxidoreductase ALFP_RS16625 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALFP_RS16625 PF01568 Molydopterin dinucleotide binding domain ALFP_RS16630 PF13247 4Fe-4S dicluster domain ALFP_RS16630 PF12800 4Fe-4S binding domain ALFP_RS16630 PF09163 Formate dehydrogenase N, transmembrane ALFP_RS16635 PF01292 Prokaryotic cytochrome b561 ALFP_RS16640 PF04216 Protein involved in formate dehydrogenase formation ALFP_RS16645 PF03841 L-seryl-tRNA selenium transferase ALFP_RS16645 PF12390 Selenocysteine synthase N terminal ALFP_RS16650 PF00009 Elongation factor Tu GTP binding domain ALFP_RS16650 PF03144 Elongation factor Tu domain 2 ALFP_RS16650 PF09106 Elongation factor SelB, winged helix ALFP_RS16650 PF09107 Elongation factor SelB, winged helix ALFP_RS16660 PF01381 Helix-turn-helix ALFP_RS16665 PF00596 Class II Aldolase and Adducin N-terminal domain ALFP_RS16675 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS16680 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS16680 PF00593 TonB dependent receptor ALFP_RS16690 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS16690 PF07660 Secretin and TonB N terminus short domain ALFP_RS16690 PF00593 TonB dependent receptor ALFP_RS16695 PF00586 AIR synthase related protein, N-terminal domain ALFP_RS16695 PF02769 AIR synthase related protein, C-terminal domain ALFP_RS16710 PF03466 LysR substrate binding domain ALFP_RS16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS16720 PF12801 4Fe-4S binding domain ALFP_RS16720 PF04205 FMN-binding domain ALFP_RS16725 PF13473 Cupredoxin-like domain ALFP_RS16725 PF18764 Nitrous oxide reductase propeller repeat ALFP_RS16725 PF18793 Nitrous oxide reductase propeller repeat 2 ALFP_RS16730 PF05048 Periplasmic copper-binding protein (NosD) ALFP_RS16735 PF00005 ABC transporter ALFP_RS16740 PF12679 ABC-2 family transporter protein ALFP_RS16755 PF00342 Phosphoglucose isomerase ALFP_RS16775 PF00106 short chain dehydrogenase ALFP_RS16820 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALFP_RS16820 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALFP_RS16820 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALFP_RS16825 PF02350 UDP-N-acetylglucosamine 2-epimerase ALFP_RS16835 PF00005 ABC transporter ALFP_RS16840 PF01061 ABC-2 type transporter ALFP_RS16845 PF02563 Polysaccharide biosynthesis/export protein ALFP_RS16850 PF00155 Aminotransferase class I and II ALFP_RS16855 PF02801 Beta-ketoacyl synthase, C-terminal domain ALFP_RS16855 PF16197 Ketoacyl-synthetase C-terminal extension ALFP_RS16855 PF00550 Phosphopantetheine attachment site ALFP_RS16855 PF08659 KR domain ALFP_RS16855 PF14765 Polyketide synthase dehydratase ALFP_RS16855 PF00109 Beta-ketoacyl synthase, N-terminal domain ALFP_RS16855 PF00698 Acyl transferase domain ALFP_RS16855 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_RS16860 PF00860 Permease family ALFP_RS16865 PF00892 EamA-like transporter family ALFP_RS16870 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS16870 PF00155 Aminotransferase class I and II ALFP_RS16875 PF00892 EamA-like transporter family ALFP_RS16890 PF14331 ImcF-related N-terminal domain ALFP_RS16890 PF06744 Type VI secretion protein IcmF C-terminal ALFP_RS16890 PF06761 Intracellular multiplication and human macrophage-killing ALFP_RS16895 PF00691 OmpA family ALFP_RS16895 PF13488 Glycine zipper ALFP_RS16900 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE ALFP_RS16925 PF05947 Type VI secretion system, TssF ALFP_RS16930 PF04965 Gene 25-like lysozyme ALFP_RS16940 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath ALFP_RS16945 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 ALFP_RS16980 PF04717 Type VI secretion system, phage-baseplate injector ALFP_RS16980 PF06715 Gp5 C-terminal repeat (3 copies) ALFP_RS16990 PF00108 Thiolase, N-terminal domain ALFP_RS16990 PF02803 Thiolase, C-terminal domain ALFP_RS16995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_RS16995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_RS16995 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS17010 PF00005 ABC transporter ALFP_RS17015 PF02405 Permease MlaE ALFP_RS17020 PF02470 MlaD protein ALFP_RS17035 PF00005 ABC transporter ALFP_RS17040 PF01061 ABC-2 type transporter ALFP_RS17050 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALFP_RS17055 PF01634 ATP phosphoribosyltransferase ALFP_RS17060 PF00815 Histidinol dehydrogenase ALFP_RS17065 PF00475 Imidazoleglycerol-phosphate dehydratase ALFP_RS17070 PF00117 Glutamine amidotransferase class-I ALFP_RS17075 PF00977 Histidine biosynthesis protein ALFP_RS17080 PF00977 Histidine biosynthesis protein ALFP_RS17085 PF01502 Phosphoribosyl-AMP cyclohydrolase ALFP_RS17090 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ALFP_RS17095 PF01230 HIT domain ALFP_RS17100 PF02416 mttA/Hcf106 family ALFP_RS17105 PF02416 mttA/Hcf106 family ALFP_RS17110 PF00902 Sec-independent protein translocase protein (TatC) ALFP_RS17115 PF13180 PDZ domain ALFP_RS17120 PF01784 NIF3 (NGG1p interacting factor 3) ALFP_RS17125 PF01741 Large-conductance mechanosensitive channel, MscL ALFP_RS17130 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ALFP_RS17130 PF00355 Rieske [2Fe-2S] domain ALFP_RS17135 PF00032 Cytochrome b(C-terminal)/b6/petD ALFP_RS17135 PF00033 Cytochrome b/b6/petB ALFP_RS17140 PF02167 Cytochrome C1 family ALFP_RS17145 PF00043 Glutathione S-transferase, C-terminal domain ALFP_RS17145 PF02798 Glutathione S-transferase, N-terminal domain ALFP_RS17150 PF04386 Stringent starvation protein B ALFP_RS17155 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS17160 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS17185 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS17190 PF01180 Dihydroorotate dehydrogenase ALFP_RS17205 PF13378 Enolase C-terminal domain-like ALFP_RS17210 PF00866 Ring hydroxylating beta subunit ALFP_RS17215 PF00355 Rieske [2Fe-2S] domain ALFP_RS17215 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALFP_RS17225 PF01070 FMN-dependent dehydrogenase ALFP_RS17230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALFP_RS17230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALFP_RS17240 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALFP_RS17250 PF03480 Bacterial extracellular solute-binding protein, family 7 ALFP_RS17255 PF01370 NAD dependent epimerase/dehydratase family ALFP_RS17265 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALFP_RS17265 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALFP_RS17270 PF00920 Dehydratase family ALFP_RS17275 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS17275 PF07729 FCD domain ALFP_RS17280 PF01037 Lrp/AsnC ligand binding domain ALFP_RS17280 PF13404 AsnC-type helix-turn-helix domain ALFP_RS17285 PF03301 Tryptophan 2,3-dioxygenase ALFP_RS17300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS17300 PF03466 LysR substrate binding domain ALFP_RS17305 PF02548 Ketopantoate hydroxymethyltransferase ALFP_RS17310 PF00248 Aldo/keto reductase family ALFP_RS17315 PF07690 Major Facilitator Superfamily ALFP_RS17320 PF00694 Aconitase C-terminal domain ALFP_RS17320 PF00330 Aconitase family (aconitate hydratase) ALFP_RS17325 PF00990 Diguanylate cyclase, GGDEF domain ALFP_RS17325 PF00072 Response regulator receiver domain ALFP_RS17330 PF13847 Methyltransferase domain ALFP_RS17340 PF00795 Carbon-nitrogen hydrolase ALFP_RS17355 PF07969 Amidohydrolase family ALFP_RS17360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS17360 PF03466 LysR substrate binding domain ALFP_RS17365 PF00083 Sugar (and other) transporter ALFP_RS17365 PF08946 Osmosensory transporter coiled coil ALFP_RS17375 PF02678 Pirin ALFP_RS17375 PF05726 Pirin C-terminal cupin domain ALFP_RS17380 PF00857 Isochorismatase family ALFP_RS17385 PF05726 Pirin C-terminal cupin domain ALFP_RS17385 PF02678 Pirin ALFP_RS17390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS17390 PF03466 LysR substrate binding domain ALFP_RS17395 PF05532 CsbD-like ALFP_RS17400 PF04972 BON domain ALFP_RS17405 PF00743 Flavin-binding monooxygenase-like ALFP_RS17410 PF02954 Bacterial regulatory protein, Fis family ALFP_RS17410 PF01590 GAF domain ALFP_RS17410 PF00158 Sigma-54 interaction domain ALFP_RS17430 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS17430 PF07660 Secretin and TonB N terminus short domain ALFP_RS17430 PF00593 TonB dependent receptor ALFP_RS17435 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS17435 PF00593 TonB dependent receptor ALFP_RS17445 PF04542 Sigma-70 region 2 ALFP_RS17445 PF08281 Sigma-70, region 4 ALFP_RS17450 PF01380 SIS domain ALFP_RS17455 PF01037 Lrp/AsnC ligand binding domain ALFP_RS17465 PF00132 Bacterial transferase hexapeptide (six repeats) ALFP_RS17465 PF14602 Hexapeptide repeat of succinyl-transferase ALFP_RS17465 PF12804 MobA-like NTP transferase domain ALFP_RS17480 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALFP_RS17480 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ALFP_RS17485 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALFP_RS17495 PF00510 Cytochrome c oxidase subunit III ALFP_RS17515 PF02628 Cytochrome oxidase assembly protein ALFP_RS17520 PF01040 UbiA prenyltransferase family ALFP_RS17525 PF00999 Sodium/hydrogen exchanger family ALFP_RS17535 PF00593 TonB dependent receptor ALFP_RS17535 PF07715 TonB-dependent Receptor Plug Domain ALFP_RS17540 PF04545 Sigma-70, region 4 ALFP_RS17540 PF04542 Sigma-70 region 2 ALFP_RS17540 PF00140 Sigma-70 factor, region 1.2 ALFP_RS17545 PF00756 Putative esterase ALFP_RS17550 PF00107 Zinc-binding dehydrogenase ALFP_RS17550 PF08240 Alcohol dehydrogenase GroES-like domain ALFP_RS17555 PF13091 PLD-like domain ALFP_RS17560 PF03372 Endonuclease/Exonuclease/phosphatase family ALFP_RS17565 PF00152 tRNA synthetases class II (D, K and N) ALFP_RS17565 PF01336 OB-fold nucleic acid binding domain ALFP_RS17565 PF02938 GAD domain ALFP_RS17585 PF01040 UbiA prenyltransferase family ALFP_RS17590 PF00155 Aminotransferase class I and II ALFP_RS17600 PF01979 Amidohydrolase family ALFP_RS17610 PF00221 Aromatic amino acid lyase ALFP_RS17615 PF17392 Urocanase C-terminal domain ALFP_RS17615 PF17391 Urocanase N-terminal domain ALFP_RS17615 PF01175 Urocanase Rossmann-like domain ALFP_RS17620 PF07702 UTRA domain ALFP_RS17620 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS17635 PF00797 N-acetyltransferase ALFP_RS17640 PF00085 Thioredoxin ALFP_RS17645 PF07690 Major Facilitator Superfamily ALFP_RS17655 PF13411 MerR HTH family regulatory protein ALFP_RS17660 PF07690 Major Facilitator Superfamily ALFP_RS17685 PF00043 Glutathione S-transferase, C-terminal domain ALFP_RS17685 PF02798 Glutathione S-transferase, N-terminal domain ALFP_RS17690 PF03466 LysR substrate binding domain ALFP_RS17690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS17695 PF00970 Oxidoreductase FAD-binding domain ALFP_RS17695 PF00042 Globin ALFP_RS17695 PF00175 Oxidoreductase NAD-binding domain ALFP_RS17700 PF00355 Rieske [2Fe-2S] domain ALFP_RS17705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALFP_RS17705 PF03466 LysR substrate binding domain ALFP_RS17710 PF00155 Aminotransferase class I and II ALFP_RS17715 PF13350 Tyrosine phosphatase family ALFP_RS17720 PF10996 Beta-Casp domain ALFP_RS17720 PF00753 Metallo-beta-lactamase superfamily ALFP_RS17720 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ALFP_RS17740 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALFP_RS17745 PF00175 Oxidoreductase NAD-binding domain ALFP_RS17745 PF00970 Oxidoreductase FAD-binding domain ALFP_RS17745 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS17765 PF00970 Oxidoreductase FAD-binding domain ALFP_RS17765 PF00111 2Fe-2S iron-sulfur cluster binding domain ALFP_RS17765 PF00175 Oxidoreductase NAD-binding domain ALFP_RS17770 PF03928 Haem-degrading ALFP_RS17775 PF00171 Aldehyde dehydrogenase family ALFP_RS17800 PF07729 FCD domain ALFP_RS17800 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS17805 PF00440 Bacterial regulatory proteins, tetR family ALFP_RS17810 PF07690 Major Facilitator Superfamily ALFP_RS17815 PF00210 Ferritin-like domain ALFP_RS17825 PF07690 Major Facilitator Superfamily ALFP_RS17830 PF01042 Endoribonuclease L-PSP ALFP_RS17835 PF03401 Tripartite tricarboxylate transporter family receptor ALFP_RS17840 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALFP_RS17845 PF00392 Bacterial regulatory proteins, gntR family ALFP_RS17845 PF07729 FCD domain ALFP_RS17850 PF00436 Single-strand binding protein family ALFP_RS17855 PF07690 Major Facilitator Superfamily ALFP_RS17860 PF17755 UvrA DNA-binding domain ALFP_RS17860 PF17760 UvrA interaction domain ALFP_RS17865 PF01966 HD domain ALFP_RS17865 PF13286 Phosphohydrolase-associated domain ALFP_RS17870 PF01761 3-dehydroquinate synthase ALFP_RS17875 PF01202 Shikimate kinase ALFP_RS17880 PF00905 Penicillin binding protein transpeptidase domain ALFP_RS17880 PF00912 Transglycosylase ALFP_RS17880 PF17092 Penicillin-binding protein OB-like domain ALFP_RS17890 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALFP_RS17890 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALFP_RS17895 PF00990 Diguanylate cyclase, GGDEF domain ALFP_RS17895 PF00563 EAL domain ALFP_RS17895 PF08448 PAS fold ALFP_RS17905 PF01578 Cytochrome C assembly protein ALFP_RS17910 PF05140 ResB-like family ALFP_RS17915 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALFP_RS17920 PF01926 50S ribosome-binding GTPase ALFP_RS17925 PF00490 Delta-aminolevulinic acid dehydratase ALFP_RS17930 PF02683 Cytochrome C biogenesis protein transmembrane region ALFP_RS17930 PF11412 Disulphide bond corrector protein DsbC ALFP_RS17935 PF03091 CutA1 divalent ion tolerance protein ALFP_RS17940 PF14525 AraC-binding-like domain ALFP_RS17940 PF12833 Helix-turn-helix domain ALFP_RS17950 PF00296 Luciferase-like monooxygenase ALFP_RS17955 PF01196 Ribosomal protein L17 ALFP_RS17960 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ALFP_RS17960 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ALFP_RS17960 PF01000 RNA polymerase Rpb3/RpoA insert domain ALFP_RS17965 PF01479 S4 domain ALFP_RS17965 PF00163 Ribosomal protein S4/S9 N-terminal domain ALFP_RS17970 PF00411 Ribosomal protein S11 ALFP_RS17975 PF00416 Ribosomal protein S13/S18 ALFP_RS17980 PF00444 Ribosomal protein L36 ALFP_RS17985 PF01176 Translation initiation factor 1A / IF-1 ALFP_RS17990 PF00344 SecY translocase ALFP_RS17995 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ALFP_RS18000 PF00327 Ribosomal protein L30p/L7e ALFP_RS18005 PF03719 Ribosomal protein S5, C-terminal domain ALFP_RS18005 PF00333 Ribosomal protein S5, N-terminal domain ALFP_RS18010 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ALFP_RS18015 PF00347 Ribosomal protein L6 ALFP_RS18020 PF00410 Ribosomal protein S8 ALFP_RS18025 PF00253 Ribosomal protein S14p/S29e ALFP_RS18030 PF00673 ribosomal L5P family C-terminus ALFP_RS18030 PF00281 Ribosomal protein L5 ALFP_RS18035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ALFP_RS18040 PF00238 Ribosomal protein L14p/L23e ALFP_RS18170 PF00529 HlyD membrane-fusion protein of T1SS ALFP_RS18175 PF00664 ABC transporter transmembrane region ALFP_RS18175 PF00005 ABC transporter ALFP_RS18175 PF03412 Peptidase C39 family ALFP_RS18185 PF02321 Outer membrane efflux protein ALFP_RS18190 PF00171 Aldehyde dehydrogenase family ALFP_RS18200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALFP_RS18200 PF02770 Acyl-CoA dehydrogenase, middle domain ALFP_RS18200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALFP_RS18200 PF09317 Domain of unknown function (DUF1974) ALFP_RS18205 PF00108 Thiolase, N-terminal domain ALFP_RS18205 PF02803 Thiolase, C-terminal domain ALFP_RS18210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALFP_RS18210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALFP_RS18210 PF00378 Enoyl-CoA hydratase/isomerase ALFP_RS18215 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ALFP_RS18230 PF00501 AMP-binding enzyme ALFP_RS18230 PF13193 AMP-binding enzyme C-terminal domain ALFP_RS18235 PF00175 Oxidoreductase NAD-binding domain ALFP_RS18235 PF00667 FAD binding domain ALFP_RS18235 PF00258 Flavodoxin ALFP_RS18240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALFP_RS18240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALFP_RS18245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALFP_RS18245 PF10414 Sirohaem synthase dimerisation region ALFP_RS18245 PF14824 Sirohaem biosynthesis protein central ALFP_RS18250 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS18260 PF00005 ABC transporter ALFP_RS18275 PF12833 Helix-turn-helix domain ALFP_RS18275 PF12852 Cupin ALFP_RS18280 PF00366 Ribosomal protein S17 ALFP_RS18285 PF00831 Ribosomal L29 protein ALFP_RS18290 PF00252 Ribosomal protein L16p/L10e ALFP_RS18295 PF07650 KH domain ALFP_RS18295 PF00189 Ribosomal protein S3, C-terminal domain ALFP_RS18300 PF00237 Ribosomal protein L22p/L17e ALFP_RS18305 PF00203 Ribosomal protein S19 ALFP_RS18310 PF00181 Ribosomal Proteins L2, RNA binding domain ALFP_RS18310 PF03947 Ribosomal Proteins L2, C-terminal domain ALFP_RS18315 PF00276 Ribosomal protein L23 ALFP_RS18320 PF00573 Ribosomal protein L4/L1 family ALFP_RS18325 PF00297 Ribosomal protein L3 ALFP_RS18330 PF00571 CBS domain ALFP_RS18330 PF00005 ABC transporter ALFP_RS18335 PF00528 Binding-protein-dependent transport system inner membrane component ALFP_RS18345 PF00338 Ribosomal protein S10p/S20e ALFP_RS18350 PF03143 Elongation factor Tu C-terminal domain ALFP_RS18350 PF03144 Elongation factor Tu domain 2 ALFP_RS18350 PF00009 Elongation factor Tu GTP binding domain ALFP_RS18355 PF03764 Elongation factor G, domain IV ALFP_RS18355 PF00679 Elongation factor G C-terminus ALFP_RS18355 PF14492 Elongation Factor G, domain II ALFP_RS18355 PF03144 Elongation factor Tu domain 2 ALFP_RS18355 PF00009 Elongation factor Tu GTP binding domain ALFP_RS18360 PF00177 Ribosomal protein S7p/S5e ALFP_RS18365 PF00164 Ribosomal protein S12/S23 ALFP_RS18370 PF00486 Transcriptional regulatory protein, C terminal ALFP_RS18370 PF00072 Response regulator receiver domain ALFP_RS18380 PF00672 HAMP domain ALFP_RS18380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALFP_RS18380 PF00512 His Kinase A (phospho-acceptor) domain ALFP_RS18395 PF00127 Copper binding proteins, plastocyanin/azurin family ALFP_RS18400 PF04998 RNA polymerase Rpb1, domain 5 ALFP_RS18400 PF04983 RNA polymerase Rpb1, domain 3 ALFP_RS18400 PF04997 RNA polymerase Rpb1, domain 1 ALFP_RS18400 PF00623 RNA polymerase Rpb1, domain 2 ALFP_RS18400 PF05000 RNA polymerase Rpb1, domain 4 ALFP_RS18405 PF04560 RNA polymerase Rpb2, domain 7 ALFP_RS18405 PF04563 RNA polymerase beta subunit ALFP_RS18405 PF00562 RNA polymerase Rpb2, domain 6 ALFP_RS18405 PF04561 RNA polymerase Rpb2, domain 2 ALFP_RS18405 PF04565 RNA polymerase Rpb2, domain 3 ALFP_RS18405 PF10385 RNA polymerase beta subunit external 1 domain ALFP_RS18410 PF00542 Ribosomal protein L7/L12 C-terminal domain ALFP_RS18410 PF16320 Ribosomal protein L7/L12 dimerisation domain ALFP_RS18415 PF00466 Ribosomal protein L10 ALFP_RS18425 PF00687 Ribosomal protein L1p/L10e family ALFP_RS18430 PF03946 Ribosomal protein L11, N-terminal domain ALFP_RS18430 PF00298 Ribosomal protein L11, RNA binding domain ALFP_RS18435 PF02357 Transcription termination factor nusG ALFP_RS18435 PF00467 KOW motif ALFP_RS18450 PF03143 Elongation factor Tu C-terminal domain ALFP_RS18450 PF03144 Elongation factor Tu domain 2 ALFP_RS18450 PF00009 Elongation factor Tu GTP binding domain ALFP_RS18475 PF02195 ParB-like nuclease domain ALFP_RS18475 PF17762 HTH domain found in ParB protein ALFP_RS18480 PF13614 AAA domain ALFP_RS18485 PF02527 rRNA small subunit methyltransferase G ALFP_RS18490 PF01134 Glucose inhibited division protein A ALFP_RS18490 PF13932 GidA associated domain ALFP_RS18495 PF00155 Aminotransferase class I and II ALFP_RS18500 PF00149 Calcineurin-like phosphoesterase ALFP_RS18510 PF00990 Diguanylate cyclase, GGDEF domain ALFP_RS18515 PF02666 Phosphatidylserine decarboxylase ALFP_RS18525 PF13291 ACT domain ALFP_RS18525 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_RS18535 PF02567 Phenazine biosynthesis-like protein ALFP_RS18570 PF10396 GTP-binding protein TrmE N-terminus ALFP_RS18570 PF12631 MnmE helical domain ALFP_RS18570 PF01926 50S ribosome-binding GTPase ALFP_RS18575 PF07883 Cupin domain ALFP_RS18575 PF01381 Helix-turn-helix ALFP_RS18580 PF01546 Peptidase family M20/M25/M40 ALFP_RS18580 PF07687 Peptidase dimerisation domain ALFP_RS18585 PF00291 Pyridoxal-phosphate dependent enzyme ALFP_RS18590 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALFP_RS18600 PF13458 Periplasmic binding protein ALFP_RS18605 PF02653 Branched-chain amino acid transport system / permease component ALFP_RS18615 PF00005 ABC transporter ALFP_RS18615 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALFP_RS18620 PF00005 ABC transporter ALFP_RS18625 PF00561 alpha/beta hydrolase fold ALFP_RS18635 PF00857 Isochorismatase family ALFP_RS18640 PF01494 FAD binding domain ALFP_RS18660 PF06628 Catalase-related immune-responsive ALFP_RS18660 PF00199 Catalase ALFP_RS18665 PF02096 60Kd inner membrane protein ALFP_RS18665 PF14849 YidC periplasmic domain ALFP_RS18670 PF01809 Putative membrane protein insertion efficiency factor ALFP_RS18675 PF00825 Ribonuclease P ALFP_RS18680 PF00468 Ribosomal protein L34