ALFP_RS00005 SM00382 ATPases associated with a variety of cellular activities ALFP_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain ALFP_RS00010 SM00480 DNA polymerase III beta subunit ALFP_RS00015 SM00387 Histidine kinase-like ATPases ALFP_RS00015 SM00433 TopoisomeraseII ALFP_RS00020 SM00363 S4 RNA-binding domain ALFP_RS00065 SM01130 ALFP_RS00065 ALFP_RS00080 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS00120 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS00130 SM00829 Enoylreductase ALFP_RS00140 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS00140 SM00895 ALFP_RS00140 ALFP_RS00175 SM01007 Class II Aldolase and Adducin N-terminal domain ALFP_RS00200 SM00382 ATPases associated with a variety of cellular activities ALFP_RS00220 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS00220 SM00866 ALFP_RS00220 ALFP_RS00240 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS00240 SM00895 ALFP_RS00240 ALFP_RS00260 SM00382 ATPases associated with a variety of cellular activities ALFP_RS00280 SM00833 Cobalamin synthesis protein cobW C-terminal domain ALFP_RS00305 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS00320 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS00335 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS00445 SM00903 Flavin reductase like domain ALFP_RS00455 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS00460 SM00903 Flavin reductase like domain ALFP_RS00465 SM00382 ATPases associated with a variety of cellular activities ALFP_RS00480 SM00965 Secretin and TonB N terminus short domain ALFP_RS00495 SM00382 ATPases associated with a variety of cellular activities ALFP_RS00500 SM00382 ATPases associated with a variety of cellular activities ALFP_RS00550 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS00610 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain ALFP_RS00640 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain ALFP_RS00640 SM00437 Bacterial DNA topoisomerase I DNA-binding domain ALFP_RS00640 SM00493 ALFP_RS00640 ALFP_RS00660 SM00878 Biotin carboxylase C-terminal domain ALFP_RS00660 SM01209 ALFP_RS00660 ALFP_RS00685 SM00422 helix_turn_helix, mercury resistance ALFP_RS00690 SM00849 Metallo-beta-lactamase superfamily ALFP_RS00710 SM00836 DALR anticodon binding domain ALFP_RS00710 SM01016 Arginyl tRNA synthetase N terminal dom ALFP_RS00730 SM00917 LeuA allosteric (dimerisation) domain ALFP_RS00820 SM00487 DEAD-like helicases superfamily ALFP_RS00820 SM00490 helicase superfamily c-terminal domain ALFP_RS00910 SM00382 ATPases associated with a variety of cellular activities ALFP_RS00965 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS00965 SM00895 ALFP_RS00965 ALFP_RS01000 SM00052 Putative diguanylate phosphodiesterase ALFP_RS01000 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS01000 SM00267 diguanylate cyclase ALFP_RS01030 SM00870 ALFP_RS01030 ALFP_RS01045 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS01050 SM00382 ATPases associated with a variety of cellular activities ALFP_RS01055 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALFP_RS01070 SM00100 Cyclic nucleotide-monophosphate binding domain ALFP_RS01080 SM00382 ATPases associated with a variety of cellular activities ALFP_RS01100 SM00382 ATPases associated with a variety of cellular activities ALFP_RS01110 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS01190 SM00357 Cold shock protein domain ALFP_RS01215 SM00936 Penicillin-binding protein 5, C-terminal domain ALFP_RS01240 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_RS01250 SM00986 Uracil DNA glycosylase superfamily ALFP_RS01250 SM00987 UreE urease accessory protein, C-terminal domain ALFP_RS01280 SM00100 Cyclic nucleotide-monophosphate binding domain ALFP_RS01280 SM00419 helix_turn_helix, cAMP Regulatory protein ALFP_RS01355 SM00052 Putative diguanylate phosphodiesterase ALFP_RS01355 SM00267 diguanylate cyclase ALFP_RS01370 SM00925 MltA specific insert domain ALFP_RS01385 SM00052 Putative diguanylate phosphodiesterase ALFP_RS01385 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS01390 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_RS01390 SM01049 ALFP_RS01390 ALFP_RS01400 SM00822 ALFP_RS01400 ALFP_RS01425 SM00823 Phosphopantetheine attachment site ALFP_RS01445 SM00382 ATPases associated with a variety of cellular activities ALFP_RS01450 SM00382 ATPases associated with a variety of cellular activities ALFP_RS01470 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS01485 SM00382 ATPases associated with a variety of cellular activities ALFP_RS01515 SM00382 ATPases associated with a variety of cellular activities ALFP_RS01530 SM00490 helicase superfamily c-terminal domain ALFP_RS01555 SM01091 Transporter associated domain ALFP_RS01635 SM00903 Flavin reductase like domain ALFP_RS01660 SM00382 ATPases associated with a variety of cellular activities ALFP_RS01675 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS01675 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ALFP_RS01680 SM00382 ATPases associated with a variety of cellular activities ALFP_RS01695 SM01130 ALFP_RS01695 ALFP_RS01750 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS01765 SM00487 DEAD-like helicases superfamily ALFP_RS01765 SM00490 helicase superfamily c-terminal domain ALFP_RS01850 SM00421 helix_turn_helix, Lux Regulon ALFP_RS01910 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS01980 SM00382 ATPases associated with a variety of cellular activities ALFP_RS01980 SM01086 C-terminal, D2-small domain, of ClpB protein ALFP_RS01995 SM00833 Cobalamin synthesis protein cobW C-terminal domain ALFP_RS02005 SM00382 ATPases associated with a variety of cellular activities ALFP_RS02050 SM00996 S-adenosyl-L-homocysteine hydrolase ALFP_RS02050 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ALFP_RS02115 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS02240 SM00487 DEAD-like helicases superfamily ALFP_RS02240 SM00490 helicase superfamily c-terminal domain ALFP_RS02295 SM00822 ALFP_RS02295 ALFP_RS02300 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS02385 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS02410 SM00382 ATPases associated with a variety of cellular activities ALFP_RS02425 SM00382 ATPases associated with a variety of cellular activities ALFP_RS02430 SM00382 ATPases associated with a variety of cellular activities ALFP_RS02445 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS02445 SM00895 ALFP_RS02445 ALFP_RS02465 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS02465 SM00866 ALFP_RS02465 ALFP_RS02470 SM00344 helix_turn_helix ASNC type ALFP_RS02515 SM00420 helix_turn_helix, Deoxyribose operon repressor ALFP_RS02515 SM01134 ALFP_RS02515 ALFP_RS02520 SM00382 ATPases associated with a variety of cellular activities ALFP_RS02545 SM00965 Secretin and TonB N terminus short domain ALFP_RS02585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ALFP_RS02595 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ALFP_RS02600 SM00363 S4 RNA-binding domain ALFP_RS02635 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS02655 SM00387 Histidine kinase-like ATPases ALFP_RS02665 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. ALFP_RS02675 SM00644 ALFP_RS02675 ALFP_RS02690 SM00382 ATPases associated with a variety of cellular activities ALFP_RS02690 SM00962 SRP54-type protein, GTPase domain ALFP_RS02690 SM00963 SRP54-type protein, helical bundle domain ALFP_RS02695 SM00257 Lysin motif ALFP_RS02720 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS02740 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS02750 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS02770 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS02770 SM00448 cheY-homologous receiver domain ALFP_RS02785 SM01007 Class II Aldolase and Adducin N-terminal domain ALFP_RS02960 SM01007 Class II Aldolase and Adducin N-terminal domain ALFP_RS02985 SM00984 UDP binding domain ALFP_RS03050 SM00849 Metallo-beta-lactamase superfamily ALFP_RS03055 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain ALFP_RS03055 SM01232 ALFP_RS03055 ALFP_RS03060 SM00028 Tetratricopeptide repeats ALFP_RS03080 SM01400 ALFP_RS03080 ALFP_RS03110 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS03115 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS03130 SM00382 ATPases associated with a variety of cellular activities ALFP_RS03140 SM00869 Autotransporter beta-domain ALFP_RS03145 SM00947 Carbonic anhydrase ALFP_RS03160 SM00382 ATPases associated with a variety of cellular activities ALFP_RS03200 SM00028 Tetratricopeptide repeats ALFP_RS03210 SM00822 ALFP_RS03210 ALFP_RS03215 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS03245 SM00382 ATPases associated with a variety of cellular activities ALFP_RS03250 SM00382 ATPases associated with a variety of cellular activities ALFP_RS03320 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ALFP_RS03320 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALFP_RS03325 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALFP_RS03340 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_RS03350 SM00852 Probable molybdopterin binding domain ALFP_RS03355 SM00852 Probable molybdopterin binding domain ALFP_RS03375 SM00421 helix_turn_helix, Lux Regulon ALFP_RS03375 SM00448 cheY-homologous receiver domain ALFP_RS03380 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ALFP_RS03380 SM00091 PAS domain ALFP_RS03380 SM00387 Histidine kinase-like ATPases ALFP_RS03380 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS03420 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_RS03420 SM00876 Biotin and Thiamin Synthesis associated domain ALFP_RS03500 SM00052 Putative diguanylate phosphodiesterase ALFP_RS03500 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ALFP_RS03500 SM00091 PAS domain ALFP_RS03500 SM00267 diguanylate cyclase ALFP_RS03510 SM01091 Transporter associated domain ALFP_RS03525 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_RS03550 SM01323 ALFP_RS03550 ALFP_RS03670 SM00919 Malic enzyme, NAD binding domain ALFP_RS03670 SM01274 ALFP_RS03670 ALFP_RS03690 SM00861 Transketolase, pyrimidine binding domain ALFP_RS03695 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALFP_RS03720 SM00852 Probable molybdopterin binding domain ALFP_RS03735 SM01001 AIR carboxylase ALFP_RS03785 SM00903 Flavin reductase like domain ALFP_RS03815 SM00382 ATPases associated with a variety of cellular activities ALFP_RS03835 SM00382 ATPases associated with a variety of cellular activities ALFP_RS03885 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_RS03895 SM00341 Helicase and RNase D C-terminal ALFP_RS03895 SM00487 DEAD-like helicases superfamily ALFP_RS03895 SM00490 helicase superfamily c-terminal domain ALFP_RS03895 SM00956 ALFP_RS03895 ALFP_RS03915 SM00382 ATPases associated with a variety of cellular activities ALFP_RS03985 SM00842 Cell division protein FtsA ALFP_RS03990 SM00864 Tubulin/FtsZ family, GTPase domain ALFP_RS03990 SM00865 Tubulin/FtsZ family, C-terminal domain ALFP_RS04010 SM00957 SecA DEAD-like domain ALFP_RS04010 SM00958 SecA preprotein cross-linking domain ALFP_RS04020 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_RS04020 SM00924 MgtE intracellular N domain ALFP_RS04060 SM00382 ATPases associated with a variety of cellular activities ALFP_RS04060 SM00930 ALFP_RS04060 ALFP_RS04075 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS04075 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ALFP_RS04085 SM00382 ATPases associated with a variety of cellular activities ALFP_RS04115 SM00650 Ribosomal RNA adenine dimethylases ALFP_RS04135 SM00563 Phosphate acyltransferases ALFP_RS04145 SM00836 DALR anticodon binding domain ALFP_RS04185 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_RS04190 SM00986 Uracil DNA glycosylase superfamily ALFP_RS04190 SM00987 UreE urease accessory protein, C-terminal domain ALFP_RS04230 SM00853 MutL C terminal dimerisation domain ALFP_RS04230 SM01340 ALFP_RS04230 ALFP_RS04240 SM00646 ALFP_RS04240 ALFP_RS04260 SM00919 Malic enzyme, NAD binding domain ALFP_RS04260 SM01274 ALFP_RS04260 ALFP_RS04275 SM01130 ALFP_RS04275 ALFP_RS04280 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS04280 SM00895 ALFP_RS04280 ALFP_RS04360 SM00382 ATPases associated with a variety of cellular activities ALFP_RS04385 SM00382 ATPases associated with a variety of cellular activities ALFP_RS04395 SM00493 ALFP_RS04395 ALFP_RS04400 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS04405 SM00382 ATPases associated with a variety of cellular activities ALFP_RS04425 SM00965 Secretin and TonB N terminus short domain ALFP_RS04440 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain ALFP_RS04445 SM00851 MGS-like domain ALFP_RS04445 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALFP_RS04455 SM00822 ALFP_RS04455 ALFP_RS04460 SM00855 Phosphoglycerate mutase family ALFP_RS04475 SM01103 ALFP_RS04475 ALFP_RS04485 SM00382 ATPases associated with a variety of cellular activities ALFP_RS04530 SM00382 ATPases associated with a variety of cellular activities ALFP_RS04550 SM00448 cheY-homologous receiver domain ALFP_RS04550 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS04555 SM00387 Histidine kinase-like ATPases ALFP_RS04565 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS04650 SM00155 Phospholipase D. Active site motifs. ALFP_RS04675 SM01130 ALFP_RS04675 ALFP_RS04715 SM00507 HNH nucleases ALFP_RS04725 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. ALFP_RS04730 SM00533 DNA-binding domain of DNA mismatch repair MUTS family ALFP_RS04730 SM00534 ATPase domain of DNA mismatch repair MUTS family ALFP_RS04750 SM00382 ATPases associated with a variety of cellular activities ALFP_RS04765 SM00382 ATPases associated with a variety of cellular activities ALFP_RS04805 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ALFP_RS04845 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS04860 SM01091 Transporter associated domain ALFP_RS04885 SM00028 Tetratricopeptide repeats ALFP_RS04890 SM00840 ALFP_RS04890 ALFP_RS04895 SM00478 endonuclease III ALFP_RS04925 SM00244 prohibitin homologues ALFP_RS04935 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS04965 SM00382 ATPases associated with a variety of cellular activities ALFP_RS04970 SM01002 Alanine dehydrogenase/PNT, C-terminal domain ALFP_RS04970 SM01003 Alanine dehydrogenase/PNT, N-terminal domain ALFP_RS05080 SM00382 ATPases associated with a variety of cellular activities ALFP_RS05105 SM00841 Elongation factor P, C-terminal ALFP_RS05105 SM01185 ALFP_RS05105 ALFP_RS05160 SM00091 PAS domain ALFP_RS05160 SM00382 ATPases associated with a variety of cellular activities ALFP_RS05170 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS05180 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS05180 SM00866 ALFP_RS05180 ALFP_RS05215 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS05215 SM00895 ALFP_RS05215 ALFP_RS05225 SM00919 Malic enzyme, NAD binding domain ALFP_RS05225 SM01274 ALFP_RS05225 ALFP_RS05235 SM00861 Transketolase, pyrimidine binding domain ALFP_RS05270 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_RS05270 SM00732 Likely ribonuclease with RNase H fold. ALFP_RS05275 SM00487 DEAD-like helicases superfamily ALFP_RS05275 SM00491 ALFP_RS05275 ALFP_RS05330 SM00363 S4 RNA-binding domain ALFP_RS05345 SM00822 ALFP_RS05345 ALFP_RS05385 SM00363 S4 RNA-binding domain ALFP_RS05395 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_RS05395 SM00322 K homology RNA-binding domain ALFP_RS05415 SM00838 Elongation factor G C-terminus ALFP_RS05440 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS05450 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs ALFP_RS05450 SM00474 3'-5' exonuclease ALFP_RS05450 SM00475 5'-3' exonuclease ALFP_RS05450 SM00482 DNA polymerase A domain ALFP_RS05460 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS05490 SM00450 Rhodanese Homology Domain ALFP_RS05505 SM00861 Transketolase, pyrimidine binding domain ALFP_RS05535 SM00382 ATPases associated with a variety of cellular activities ALFP_RS05550 SM00670 Large family of predicted nucleotide-binding domains ALFP_RS05600 SM01005 Alanine racemase, C-terminal domain ALFP_RS05610 SM00382 ATPases associated with a variety of cellular activities ALFP_RS05630 SM00382 ATPases associated with a variety of cellular activities ALFP_RS05660 SM00052 Putative diguanylate phosphodiesterase ALFP_RS05680 SM00382 ATPases associated with a variety of cellular activities ALFP_RS05680 SM00487 DEAD-like helicases superfamily ALFP_RS05680 SM00490 helicase superfamily c-terminal domain ALFP_RS05680 SM00847 Helicase associated domain (HA2) Add an annotation ALFP_RS05685 SM00481 DNA polymerase alpha chain like domain ALFP_RS05735 SM00382 ATPases associated with a variety of cellular activities ALFP_RS05750 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_RS05790 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS05790 SM00895 ALFP_RS05790 ALFP_RS05885 SM00849 Metallo-beta-lactamase superfamily ALFP_RS05890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ALFP_RS05905 SM00422 helix_turn_helix, mercury resistance ALFP_RS05970 SM00073 Histidine Phosphotransfer domain ALFP_RS05970 SM00260 Two component signalling adaptor domain ALFP_RS05970 SM00387 Histidine kinase-like ATPases ALFP_RS05970 SM01231 ALFP_RS05970 ALFP_RS05975 SM00260 Two component signalling adaptor domain ALFP_RS05980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_RS05980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_RS05985 SM00138 Methyltransferase, chemotaxis proteins ALFP_RS05990 SM00448 cheY-homologous receiver domain ALFP_RS05995 SM00448 cheY-homologous receiver domain ALFP_RS06015 SM00382 ATPases associated with a variety of cellular activities ALFP_RS06015 SM00962 SRP54-type protein, GTPase domain ALFP_RS06025 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS06040 SM00858 ALFP_RS06040 ALFP_RS06085 SM00047 Lysozyme subfamily 2 ALFP_RS06100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_RS06100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_RS06110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_RS06110 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_RS06115 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_RS06120 SM00479 ALFP_RS06120 ALFP_RS06170 SM00382 ATPases associated with a variety of cellular activities ALFP_RS06230 SM00028 Tetratricopeptide repeats ALFP_RS06270 SM00382 ATPases associated with a variety of cellular activities ALFP_RS06305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_RS06310 SM00091 PAS domain ALFP_RS06310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_RS06310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_RS06395 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS06400 SM00382 ATPases associated with a variety of cellular activities ALFP_RS06420 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS06470 SM00450 Rhodanese Homology Domain ALFP_RS06555 SM00357 Cold shock protein domain ALFP_RS06560 SM00387 Histidine kinase-like ATPases ALFP_RS06560 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS06565 SM00448 cheY-homologous receiver domain ALFP_RS06565 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS06605 SM00965 Secretin and TonB N terminus short domain ALFP_RS06700 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS06715 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS06715 SM00895 ALFP_RS06715 ALFP_RS06725 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS06785 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS06790 SM00448 cheY-homologous receiver domain ALFP_RS06790 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ALFP_RS06795 SM00091 PAS domain ALFP_RS06795 SM00387 Histidine kinase-like ATPases ALFP_RS06795 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS06795 SM00448 cheY-homologous receiver domain ALFP_RS06800 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_RS06800 SM00924 MgtE intracellular N domain ALFP_RS06905 SM00479 ALFP_RS06905 ALFP_RS06910 SM00267 diguanylate cyclase ALFP_RS06925 SM00344 helix_turn_helix ASNC type ALFP_RS06965 SM00382 ATPases associated with a variety of cellular activities ALFP_RS06985 SM00354 helix_turn _helix lactose operon repressor ALFP_RS07010 SM00387 Histidine kinase-like ATPases ALFP_RS07010 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS07015 SM00448 cheY-homologous receiver domain ALFP_RS07015 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS07105 SM00357 Cold shock protein domain ALFP_RS07115 SM00382 ATPases associated with a variety of cellular activities ALFP_RS07115 SM01086 C-terminal, D2-small domain, of ClpB protein ALFP_RS07155 SM00382 ATPases associated with a variety of cellular activities ALFP_RS07160 SM00382 ATPases associated with a variety of cellular activities ALFP_RS07210 SM00904 Riboflavin kinase ALFP_RS07285 SM00382 ATPases associated with a variety of cellular activities ALFP_RS07310 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS07340 SM00477 DNA/RNA non-specific endonuclease ALFP_RS07340 SM00892 DNA/RNA non-specific endonuclease ALFP_RS07365 SM00422 helix_turn_helix, mercury resistance ALFP_RS07395 SM00382 ATPases associated with a variety of cellular activities ALFP_RS07395 SM00994 ClpX C4-type zinc finger ALFP_RS07395 SM01086 C-terminal, D2-small domain, of ClpB protein ALFP_RS07400 SM00382 ATPases associated with a variety of cellular activities ALFP_RS07400 SM00464 Found in ATP-dependent protease La (LON) ALFP_RS07425 SM00487 DEAD-like helicases superfamily ALFP_RS07425 SM00490 helicase superfamily c-terminal domain ALFP_RS07430 SM00226 Low molecular weight phosphatase family ALFP_RS07485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_RS07485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_RS07525 SM00382 ATPases associated with a variety of cellular activities ALFP_RS07535 SM00849 Metallo-beta-lactamase superfamily ALFP_RS07545 SM00481 DNA polymerase alpha chain like domain ALFP_RS07555 SM01211 ALFP_RS07555 ALFP_RS07560 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_RS07560 SM01240 ALFP_RS07560 ALFP_RS07570 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS07695 SM00833 Cobalamin synthesis protein cobW C-terminal domain ALFP_RS07705 SM01234 ALFP_RS07705 ALFP_RS07740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_RS07740 SM00387 Histidine kinase-like ATPases ALFP_RS07740 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS07745 SM00448 cheY-homologous receiver domain ALFP_RS07745 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS07825 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS07910 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS07925 SM00450 Rhodanese Homology Domain ALFP_RS07930 SM00232 JAB/MPN domain ALFP_RS07975 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ALFP_RS07995 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS08000 SM00917 LeuA allosteric (dimerisation) domain ALFP_RS08005 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS08020 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ALFP_RS08030 SM00882 Coenzyme A transferase ALFP_RS08035 SM00882 Coenzyme A transferase ALFP_RS08080 SM00421 helix_turn_helix, Lux Regulon ALFP_RS08110 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS08135 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS08145 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS08150 SM00990 ALFP_RS08150 ALFP_RS08155 SM00488 ALFP_RS08155 ALFP_RS08155 SM00491 ALFP_RS08155 ALFP_RS08195 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS08210 SM00749 bacterial OsmY and nodulation domain ALFP_RS08255 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS08270 SM00382 ATPases associated with a variety of cellular activities ALFP_RS08295 SM00382 ATPases associated with a variety of cellular activities ALFP_RS08295 SM00989 ALFP_RS08295 ALFP_RS08370 SM00354 helix_turn _helix lactose operon repressor ALFP_RS08405 SM00244 prohibitin homologues ALFP_RS08450 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_RS08500 SM00382 ATPases associated with a variety of cellular activities ALFP_RS08520 SM00873 B3/4 domain ALFP_RS08520 SM00874 tRNA synthetase B5 domain ALFP_RS08520 SM00896 Ferredoxin-fold anticodon binding domain ALFP_RS08525 SM00411 bacterial (prokaryotic) histone like domain ALFP_RS08530 SM00422 helix_turn_helix, mercury resistance ALFP_RS08545 SM00382 ATPases associated with a variety of cellular activities ALFP_RS08560 SM00382 ATPases associated with a variety of cellular activities ALFP_RS08590 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS08610 SM00382 ATPases associated with a variety of cellular activities ALFP_RS08635 SM00854 Bacterial capsule synthesis protein PGA_cap ALFP_RS08680 SM00382 ATPases associated with a variety of cellular activities ALFP_RS08925 SM01252 ALFP_RS08925 ALFP_RS08975 SM00631 ALFP_RS08975 ALFP_RS09080 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS09125 SM00481 DNA polymerase alpha chain like domain ALFP_RS09140 SM01144 ALFP_RS09140 ALFP_RS09225 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ALFP_RS09245 SM00834 Putative regulatory protein ALFP_RS09275 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS09305 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS09340 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_RS09345 SM01230 ALFP_RS09345 ALFP_RS09370 SM00382 ATPases associated with a variety of cellular activities ALFP_RS09395 SM00487 DEAD-like helicases superfamily ALFP_RS09395 SM00490 helicase superfamily c-terminal domain ALFP_RS09420 SM00382 ATPases associated with a variety of cellular activities ALFP_RS09460 SM00382 ATPases associated with a variety of cellular activities ALFP_RS09465 SM00382 ATPases associated with a variety of cellular activities ALFP_RS09490 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALFP_RS09520 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS09525 SM01007 Class II Aldolase and Adducin N-terminal domain ALFP_RS09550 SM00248 ankyrin repeats ALFP_RS09620 SM00822 ALFP_RS09620 ALFP_RS09650 SM00867 YceI-like domain ALFP_RS09655 SM00867 YceI-like domain ALFP_RS09680 SM00248 ankyrin repeats ALFP_RS09795 SM00935 Outer membrane protein (OmpH-like) ALFP_RS09805 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ALFP_RS09850 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ALFP_RS09905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) ALFP_RS09905 SM00091 PAS domain ALFP_RS09905 SM00387 Histidine kinase-like ATPases ALFP_RS09905 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS09910 SM00421 helix_turn_helix, Lux Regulon ALFP_RS09910 SM00448 cheY-homologous receiver domain ALFP_RS09930 SM00838 Elongation factor G C-terminus ALFP_RS09930 SM00889 Elongation factor G, domain IV ALFP_RS09935 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ALFP_RS09945 SM00422 helix_turn_helix, mercury resistance ALFP_RS09975 SM00382 ATPases associated with a variety of cellular activities ALFP_RS10040 SM00072 Guanylate kinase homologues. ALFP_RS10045 SM01409 ALFP_RS10045 ALFP_RS10050 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ALFP_RS10050 SM00954 Region found in RelA / SpoT proteins ALFP_RS10085 SM00363 S4 RNA-binding domain ALFP_RS10105 SM00938 Nitrogen regulatory protein P-II ALFP_RS10145 SM00257 Lysin motif ALFP_RS10160 SM01207 ALFP_RS10160 ALFP_RS10195 SM00382 ATPases associated with a variety of cellular activities ALFP_RS10210 SM00382 ATPases associated with a variety of cellular activities ALFP_RS10245 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS10285 SM00859 Semialdehyde dehydrogenase, NAD binding domain ALFP_RS10290 SM01329 ALFP_RS10290 ALFP_RS10305 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS10320 SM00421 helix_turn_helix, Lux Regulon ALFP_RS10320 SM00448 cheY-homologous receiver domain ALFP_RS10325 SM00387 Histidine kinase-like ATPases ALFP_RS10325 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS10355 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_RS10390 SM00240 Forkhead associated domain ALFP_RS10400 SM00858 ALFP_RS10400 ALFP_RS10460 SM00881 CoA binding domain ALFP_RS10490 SM00382 ATPases associated with a variety of cellular activities ALFP_RS10495 SM00448 cheY-homologous receiver domain ALFP_RS10495 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS10500 SM00387 Histidine kinase-like ATPases ALFP_RS10500 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS10515 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS10565 SM01359 ALFP_RS10565 ALFP_RS10565 SM01360 ALFP_RS10565 ALFP_RS10580 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_RS10635 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS10650 SM00387 Histidine kinase-like ATPases ALFP_RS10650 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS10655 SM00448 cheY-homologous receiver domain ALFP_RS10655 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS10675 SM00382 ATPases associated with a variety of cellular activities ALFP_RS10705 SM00357 Cold shock protein domain ALFP_RS10715 SM00411 bacterial (prokaryotic) histone like domain ALFP_RS10740 SM00344 helix_turn_helix ASNC type ALFP_RS10775 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS10785 SM00967 RNA 2'-O ribose methyltransferase substrate binding ALFP_RS10790 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_RS10790 SM00357 Cold shock protein domain ALFP_RS10790 SM00955 ALFP_RS10790 ALFP_RS10805 SM00354 helix_turn _helix lactose operon repressor ALFP_RS10820 SM00382 ATPases associated with a variety of cellular activities ALFP_RS10825 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS10890 SM00382 ATPases associated with a variety of cellular activities ALFP_RS10965 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS10990 SM01092 CO dehydrogenase flavoprotein C-terminal domain ALFP_RS10995 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_RS11015 SM00448 cheY-homologous receiver domain ALFP_RS11015 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS11020 SM00387 Histidine kinase-like ATPases ALFP_RS11030 SM00400 zinc finger ALFP_RS11030 SM00493 ALFP_RS11030 ALFP_RS11030 SM00766 DNA primase DnaG DnaB-binding ALFP_RS11045 SM00788 Adenylosuccinate synthetase ALFP_RS11055 SM00244 prohibitin homologues ALFP_RS11060 SM00244 prohibitin homologues ALFP_RS11085 SM00564 beta-propeller repeat ALFP_RS11115 SM00562 ALFP_RS11115 ALFP_RS11145 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain ALFP_RS11155 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS11155 SM00895 ALFP_RS11155 ALFP_RS11205 SM00434 DNA Topoisomerase IV ALFP_RS11210 SM00387 Histidine kinase-like ATPases ALFP_RS11210 SM00433 TopoisomeraseII ALFP_RS11220 SM00357 Cold shock protein domain ALFP_RS11220 SM00382 ATPases associated with a variety of cellular activities ALFP_RS11220 SM00959 Rho termination factor, N-terminal domain ALFP_RS11225 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALFP_RS11230 SM00903 Flavin reductase like domain ALFP_RS11245 SM00382 ATPases associated with a variety of cellular activities ALFP_RS11265 SM00989 ALFP_RS11265 ALFP_RS11270 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS11270 SM00895 ALFP_RS11270 ALFP_RS11295 SM00382 ATPases associated with a variety of cellular activities ALFP_RS11295 SM01086 C-terminal, D2-small domain, of ClpB protein ALFP_RS11300 SM00100 Cyclic nucleotide-monophosphate binding domain ALFP_RS11300 SM00419 helix_turn_helix, cAMP Regulatory protein ALFP_RS11370 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ALFP_RS11370 SM00465 GIY-YIG type nucleases (URI domain) ALFP_RS11430 SM00479 ALFP_RS11430 ALFP_RS11480 SM00893 Electron transfer flavoprotein domain ALFP_RS11485 SM00893 Electron transfer flavoprotein domain ALFP_RS11505 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ALFP_RS11530 SM00411 bacterial (prokaryotic) histone like domain ALFP_RS11535 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_RS11555 SM00830 Chorismate mutase type II ALFP_RS11565 SM00434 DNA Topoisomerase IV ALFP_RS11620 SM01060 ALFP_RS11620 ALFP_RS11635 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS11685 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS11740 SM00487 DEAD-like helicases superfamily ALFP_RS11770 SM00382 ATPases associated with a variety of cellular activities ALFP_RS11815 SM00421 helix_turn_helix, Lux Regulon ALFP_RS11815 SM00448 cheY-homologous receiver domain ALFP_RS11820 SM00091 PAS domain ALFP_RS11820 SM00387 Histidine kinase-like ATPases ALFP_RS11820 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS11820 SM00448 cheY-homologous receiver domain ALFP_RS11840 SM00387 Histidine kinase-like ATPases ALFP_RS11840 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS11845 SM00448 cheY-homologous receiver domain ALFP_RS11850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). ALFP_RS11915 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS11925 SM00938 Nitrogen regulatory protein P-II ALFP_RS11950 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS11990 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS12005 SM00382 ATPases associated with a variety of cellular activities ALFP_RS12040 SM00382 ATPases associated with a variety of cellular activities ALFP_RS12060 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS12090 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS12090 SM00529 Helix-turn-helix diphteria tox regulatory element ALFP_RS12105 SM00528 Domain in histone-like proteins of HNS family ALFP_RS12125 SM00829 Enoylreductase ALFP_RS12135 SM01329 ALFP_RS12135 ALFP_RS12155 SM01209 ALFP_RS12155 ALFP_RS12155 SM01210 ALFP_RS12155 ALFP_RS12270 SM00382 ATPases associated with a variety of cellular activities ALFP_RS12335 SM00981 ALFP_RS12335 ALFP_RS12360 SM01192 ALFP_RS12360 ALFP_RS12360 SM01193 ALFP_RS12360 ALFP_RS12365 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS12405 SM00882 Coenzyme A transferase ALFP_RS12410 SM00882 Coenzyme A transferase ALFP_RS12510 SM00358 Double-stranded RNA binding motif ALFP_RS12510 SM00535 Ribonuclease III family ALFP_RS12520 SM00838 Elongation factor G C-terminus ALFP_RS12525 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ALFP_RS12550 SM00825 Beta-ketoacyl synthase ALFP_RS12560 SM00822 ALFP_RS12560 ALFP_RS12565 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ALFP_RS12600 SM00644 ALFP_RS12600 ALFP_RS12620 SM00363 S4 RNA-binding domain ALFP_RS12625 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_RS12645 SM00954 Region found in RelA / SpoT proteins ALFP_RS12675 SM00478 endonuclease III ALFP_RS12675 SM00525 ALFP_RS12675 ALFP_RS12690 SM00382 ATPases associated with a variety of cellular activities ALFP_RS12695 SM00382 ATPases associated with a variety of cellular activities ALFP_RS12730 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ALFP_RS12730 SM00292 breast cancer carboxy-terminal domain ALFP_RS12730 SM00532 Ligase N family ALFP_RS12735 SM00771 ZipA, C-terminal domain (FtsZ-binding) ALFP_RS12740 SM00968 SMC proteins Flexible Hinge Domain ALFP_RS12750 SM00986 Uracil DNA glycosylase superfamily ALFP_RS12750 SM00987 UreE urease accessory protein, C-terminal domain ALFP_RS12760 SM00448 cheY-homologous receiver domain ALFP_RS12760 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS12765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_RS12765 SM00387 Histidine kinase-like ATPases ALFP_RS12765 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS12780 SM00487 DEAD-like helicases superfamily ALFP_RS12780 SM00490 helicase superfamily c-terminal domain ALFP_RS12780 SM00982 ALFP_RS12780 ALFP_RS12780 SM01058 CarD-like/TRCF domain ALFP_RS12835 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALFP_RS12840 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALFP_RS12890 SM00829 Enoylreductase ALFP_RS12910 SM00316 Ribosomal protein S1-like RNA-binding domain ALFP_RS12910 SM00322 K homology RNA-binding domain ALFP_RS12915 SM01387 ALFP_RS12915 ALFP_RS12980 SM00382 ATPases associated with a variety of cellular activities ALFP_RS12990 SM00382 ATPases associated with a variety of cellular activities ALFP_RS12990 SM00843 ALFP_RS12990 ALFP_RS13000 SM00463 Small MutS-related domain ALFP_RS13005 SM00028 Tetratricopeptide repeats ALFP_RS13020 SM00903 Flavin reductase like domain ALFP_RS13025 SM00886 Stress responsive A/B Barrel Domain ALFP_RS13045 SM01329 ALFP_RS13045 ALFP_RS13065 SM00382 ATPases associated with a variety of cellular activities ALFP_RS13085 SM00382 ATPases associated with a variety of cellular activities ALFP_RS13100 SM00028 Tetratricopeptide repeats ALFP_RS13130 SM00858 ALFP_RS13130 ALFP_RS13165 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS13180 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS13190 SM00271 DnaJ molecular chaperone homology domain ALFP_RS13245 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS13245 SM00895 ALFP_RS13245 ALFP_RS13265 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS13265 SM00895 ALFP_RS13265 ALFP_RS13295 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS13360 SM00953 ALFP_RS13360 ALFP_RS13375 SM00382 ATPases associated with a variety of cellular activities ALFP_RS13380 SM00382 ATPases associated with a variety of cellular activities ALFP_RS13405 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS13410 SM00487 DEAD-like helicases superfamily ALFP_RS13410 SM00490 helicase superfamily c-terminal domain ALFP_RS13460 SM00859 Semialdehyde dehydrogenase, NAD binding domain ALFP_RS13490 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS13520 SM00822 ALFP_RS13520 ALFP_RS13535 SM00382 ATPases associated with a variety of cellular activities ALFP_RS13580 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS13615 SM00422 helix_turn_helix, mercury resistance ALFP_RS13645 SM01012 ALFP_RS13645 ALFP_RS13680 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS13745 SM00052 Putative diguanylate phosphodiesterase ALFP_RS13750 SM00857 Resolvase, N terminal domain ALFP_RS13760 SM00382 ATPases associated with a variety of cellular activities ALFP_RS13815 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_RS13835 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS13875 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS13880 SM00852 Probable molybdopterin binding domain ALFP_RS13895 SM00487 DEAD-like helicases superfamily ALFP_RS13895 SM00490 helicase superfamily c-terminal domain ALFP_RS13955 SM00798 AICARFT/IMPCHase bienzyme ALFP_RS13955 SM00851 MGS-like domain ALFP_RS13965 SM00278 Helix-hairpin-helix DNA-binding motif class 1 ALFP_RS13975 SM00382 ATPases associated with a variety of cellular activities ALFP_RS13990 SM00151 SWI complex, BAF60b domains ALFP_RS14040 SM00450 Rhodanese Homology Domain ALFP_RS14100 SM00382 ATPases associated with a variety of cellular activities ALFP_RS14115 SM00387 Histidine kinase-like ATPases ALFP_RS14115 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS14120 SM00448 cheY-homologous receiver domain ALFP_RS14120 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS14205 SM00382 ATPases associated with a variety of cellular activities ALFP_RS14245 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS14285 SM01150 ALFP_RS14285 ALFP_RS14325 SM00267 diguanylate cyclase ALFP_RS14345 SM00883 Chaperonin 10 Kd subunit ALFP_RS14360 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family ALFP_RS14375 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS14410 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS14415 SM00880 ALFP_RS14415 ALFP_RS14415 SM01118 ALFP_RS14415 ALFP_RS14420 SM00382 ATPases associated with a variety of cellular activities ALFP_RS14420 SM00962 SRP54-type protein, GTPase domain ALFP_RS14420 SM00963 SRP54-type protein, helical bundle domain ALFP_RS14475 SM00869 Autotransporter beta-domain ALFP_RS14495 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_RS14505 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_RS14515 SM00382 ATPases associated with a variety of cellular activities ALFP_RS14520 SM00382 ATPases associated with a variety of cellular activities ALFP_RS14545 SM00267 diguanylate cyclase ALFP_RS14575 SM00849 Metallo-beta-lactamase superfamily ALFP_RS14580 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS14580 SM00866 ALFP_RS14580 ALFP_RS14585 SM01043 Bacterial transcriptional activator domain ALFP_RS14590 SM00155 Phospholipase D. Active site motifs. ALFP_RS14625 SM00382 ATPases associated with a variety of cellular activities ALFP_RS14645 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_RS14700 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS14705 SM00382 ATPases associated with a variety of cellular activities ALFP_RS14750 SM00479 ALFP_RS14750 ALFP_RS14775 SM00849 Metallo-beta-lactamase superfamily ALFP_RS14780 SM00257 Lysin motif ALFP_RS14800 SM01092 CO dehydrogenase flavoprotein C-terminal domain ALFP_RS14810 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALFP_RS14820 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS14825 SM00382 ATPases associated with a variety of cellular activities ALFP_RS14825 SM00448 cheY-homologous receiver domain ALFP_RS14830 SM00387 Histidine kinase-like ATPases ALFP_RS14830 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS14845 SM00450 Rhodanese Homology Domain ALFP_RS14875 SM00382 ATPases associated with a variety of cellular activities ALFP_RS14905 SM00822 ALFP_RS14905 ALFP_RS14935 SM00881 CoA binding domain ALFP_RS14945 SM00829 Enoylreductase ALFP_RS14960 SM00346 helix_turn_helix isocitrate lyase regulation ALFP_RS14970 SM00829 Enoylreductase ALFP_RS15000 SM00382 ATPases associated with a variety of cellular activities ALFP_RS15005 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS15035 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS15035 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. ALFP_RS15040 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor ALFP_RS15060 SM00448 cheY-homologous receiver domain ALFP_RS15060 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS15065 SM00387 Histidine kinase-like ATPases ALFP_RS15065 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS15085 SM00528 Domain in histone-like proteins of HNS family ALFP_RS15225 SM00382 ATPases associated with a variety of cellular activities ALFP_RS15280 SM00363 S4 RNA-binding domain ALFP_RS15305 SM00859 Semialdehyde dehydrogenase, NAD binding domain ALFP_RS15345 SM00831 Cation transporter/ATPase, N-terminus ALFP_RS15350 SM00387 Histidine kinase-like ATPases ALFP_RS15350 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS15355 SM00421 helix_turn_helix, Lux Regulon ALFP_RS15355 SM00448 cheY-homologous receiver domain ALFP_RS15405 SM01322 ALFP_RS15405 ALFP_RS15415 SM00344 helix_turn_helix ASNC type ALFP_RS15435 SM00478 endonuclease III ALFP_RS15460 SM00878 Biotin carboxylase C-terminal domain ALFP_RS15490 SM00955 ALFP_RS15490 ALFP_RS15520 SM00563 Phosphate acyltransferases ALFP_RS15525 SM00732 Likely ribonuclease with RNase H fold. ALFP_RS15560 SM00347 helix_turn_helix multiple antibiotic resistance protein ALFP_RS15595 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase ALFP_RS15605 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS15610 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS15615 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS15635 SM00382 ATPases associated with a variety of cellular activities ALFP_RS15650 SM00062 Bacterial periplasmic substrate-binding proteins ALFP_RS15655 SM00382 ATPases associated with a variety of cellular activities ALFP_RS15665 SM00478 endonuclease III ALFP_RS15705 SM00845 GatB domain ALFP_RS15750 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. ALFP_RS15750 SM00382 ATPases associated with a variety of cellular activities ALFP_RS15755 SM00100 Cyclic nucleotide-monophosphate binding domain ALFP_RS15755 SM00419 helix_turn_helix, cAMP Regulatory protein ALFP_RS15825 SM00421 helix_turn_helix, Lux Regulon ALFP_RS15850 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS15855 SM01018 B12 binding domain ALFP_RS15870 SM00965 Secretin and TonB N terminus short domain ALFP_RS15970 SM00978 ALFP_RS15970 ALFP_RS15980 SM00448 cheY-homologous receiver domain ALFP_RS15980 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS15985 SM00387 Histidine kinase-like ATPases ALFP_RS15985 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS15995 SM00796 Allophanate hydrolase subunit 1 ALFP_RS16000 SM00797 Allophanate hydrolase subunit 2 ALFP_RS16025 SM00869 Autotransporter beta-domain ALFP_RS16035 SM00382 ATPases associated with a variety of cellular activities ALFP_RS16040 SM00382 ATPases associated with a variety of cellular activities ALFP_RS16065 SM00116 Domain in cystathionine beta-synthase and other proteins. ALFP_RS16085 SM00382 ATPases associated with a variety of cellular activities ALFP_RS16130 SM00749 bacterial OsmY and nodulation domain ALFP_RS16155 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS16165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ALFP_RS16165 SM00245 tail specific protease ALFP_RS16175 SM00855 Phosphoglycerate mutase family ALFP_RS16180 SM00450 Rhodanese Homology Domain ALFP_RS16225 SM00448 cheY-homologous receiver domain ALFP_RS16225 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS16230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_RS16230 SM00387 Histidine kinase-like ATPases ALFP_RS16230 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS16240 SM00448 cheY-homologous receiver domain ALFP_RS16245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain ALFP_RS16245 SM00387 Histidine kinase-like ATPases ALFP_RS16245 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS16260 SM00729 Elongator protein 3, MiaB family, Radical SAM ALFP_RS16285 SM00382 ATPases associated with a variety of cellular activities ALFP_RS16370 SM00382 ATPases associated with a variety of cellular activities ALFP_RS16420 SM00905 Dihydroneopterin aldolase ALFP_RS16445 SM00937 ALFP_RS16445 ALFP_RS16490 SM00965 Secretin and TonB N terminus short domain ALFP_RS16555 SM00387 Histidine kinase-like ATPases ALFP_RS16555 SM00388 His Kinase A (phosphoacceptor) domain ALFP_RS16560 SM00448 cheY-homologous receiver domain ALFP_RS16560 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS16580 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS16595 SM00382 ATPases associated with a variety of cellular activities ALFP_RS16610 SM00100 Cyclic nucleotide-monophosphate binding domain ALFP_RS16610 SM00419 helix_turn_helix, cAMP Regulatory protein ALFP_RS16620 SM00926 Molybdopterin oxidoreductase Fe4S4 domain ALFP_RS16660 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS16665 SM01007 Class II Aldolase and Adducin N-terminal domain ALFP_RS16715 SM00450 Rhodanese Homology Domain ALFP_RS16720 SM00900 ALFP_RS16720 ALFP_RS16730 SM00710 Parallel beta-helix repeats ALFP_RS16730 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses ALFP_RS16735 SM00382 ATPases associated with a variety of cellular activities ALFP_RS16820 SM00984 UDP binding domain ALFP_RS16855 SM00822 ALFP_RS16855 ALFP_RS16855 SM00823 Phosphopantetheine attachment site ALFP_RS16855 SM00825 Beta-ketoacyl synthase ALFP_RS16855 SM00826 ALFP_RS16855 ALFP_RS16855 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. ALFP_RS16855 SM00829 Enoylreductase ALFP_RS16855 SM01294 ALFP_RS16855 ALFP_RS16870 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS17010 SM00382 ATPases associated with a variety of cellular activities ALFP_RS17035 SM00382 ATPases associated with a variety of cellular activities ALFP_RS17115 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. ALFP_RS17205 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ALFP_RS17275 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS17275 SM00895 ALFP_RS17275 ALFP_RS17280 SM00344 helix_turn_helix ASNC type ALFP_RS17325 SM00267 diguanylate cyclase ALFP_RS17370 SM00822 ALFP_RS17370 ALFP_RS17400 SM00749 bacterial OsmY and nodulation domain ALFP_RS17410 SM00382 ATPases associated with a variety of cellular activities ALFP_RS17435 SM00965 Secretin and TonB N terminus short domain ALFP_RS17455 SM00344 helix_turn_helix ASNC type ALFP_RS17550 SM00829 Enoylreductase ALFP_RS17555 SM00155 Phospholipase D. Active site motifs. ALFP_RS17575 SM00834 Putative regulatory protein ALFP_RS17620 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS17620 SM00866 ALFP_RS17620 ALFP_RS17625 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS17655 SM00422 helix_turn_helix, mercury resistance ALFP_RS17665 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS17720 SM00849 Metallo-beta-lactamase superfamily ALFP_RS17780 SM01236 ALFP_RS17780 ALFP_RS17800 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS17800 SM00895 ALFP_RS17800 ALFP_RS17845 SM00345 helix_turn_helix gluconate operon transcriptional repressor ALFP_RS17845 SM00895 ALFP_RS17845 ALFP_RS17865 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. ALFP_RS17895 SM00052 Putative diguanylate phosphodiesterase ALFP_RS17895 SM00267 diguanylate cyclase ALFP_RS17925 SM01004 Delta-aminolevulinic acid dehydratase ALFP_RS17940 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS17945 SM00903 Flavin reductase like domain ALFP_RS17960 SM00662 RNA polymerases D ALFP_RS17965 SM00363 S4 RNA-binding domain ALFP_RS17965 SM01390 ALFP_RS17965 ALFP_RS18040 SM01374 ALFP_RS18040 ALFP_RS18045 SM00052 Putative diguanylate phosphodiesterase ALFP_RS18045 SM00267 diguanylate cyclase ALFP_RS18165 SM00421 helix_turn_helix, Lux Regulon ALFP_RS18175 SM00382 ATPases associated with a variety of cellular activities ALFP_RS18260 SM00382 ATPases associated with a variety of cellular activities ALFP_RS18275 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS18295 SM00322 K homology RNA-binding domain ALFP_RS18310 SM01382 ALFP_RS18310 ALFP_RS18310 SM01383 ALFP_RS18310 ALFP_RS18330 SM00382 ATPases associated with a variety of cellular activities ALFP_RS18345 SM01403 ALFP_RS18345 ALFP_RS18355 SM00838 Elongation factor G C-terminus ALFP_RS18355 SM00889 Elongation factor G, domain IV ALFP_RS18370 SM00448 cheY-homologous receiver domain ALFP_RS18370 SM00862 Transcriptional regulatory protein, C terminal ALFP_RS18375 SM00257 Lysin motif ALFP_RS18380 SM00387 Histidine kinase-like ATPases ALFP_RS18380 SM01080 ALFP_RS18380 ALFP_RS18385 SM00342 helix_turn_helix, arabinose operon control protein ALFP_RS18400 SM00663 RNA polymerase I subunit A N-terminus ALFP_RS18430 SM00649 Ribosomal protein L11/L12 ALFP_RS18435 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. ALFP_RS18435 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. ALFP_RS18475 SM00470 ParB-like nuclease domain ALFP_RS18490 SM01228 ALFP_RS18490 ALFP_RS18510 SM00267 diguanylate cyclase ALFP_RS18550 SM00869 Autotransporter beta-domain ALFP_RS18575 SM00530 Helix-turn-helix XRE-family like proteins ALFP_RS18615 SM00382 ATPases associated with a variety of cellular activities ALFP_RS18620 SM00382 ATPases associated with a variety of cellular activities ALFP_RS18660 SM01060 ALFP_RS18660 ALFP_RS18670 SM01234 ALFP_RS18670