ALPR1_RS00045	SM01001	AIR carboxylase
ALPR1_RS00055	SM00534	ATPase domain of DNA mismatch repair MUTS family
ALPR1_RS00125	SM00245	tail specific protease
ALPR1_RS00130	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ALPR1_RS00190	SM01321	ALPR1_RS00190
ALPR1_RS00270	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS00280	SM00028	Tetratricopeptide repeats
ALPR1_RS00335	SM00028	Tetratricopeptide repeats
ALPR1_RS00430	SM01091	Transporter associated domain
ALPR1_RS00445	SM00028	Tetratricopeptide repeats
ALPR1_RS00465	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ALPR1_RS00480	SM01005	Alanine racemase, C-terminal domain
ALPR1_RS00505	SM00028	Tetratricopeptide repeats
ALPR1_RS00505	SM00671	Sel1-like repeats.
ALPR1_RS00530	SM00091	PAS domain
ALPR1_RS00530	SM00387	Histidine kinase-like ATPases
ALPR1_RS00625	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
ALPR1_RS00625	SM00474	3'-5' exonuclease
ALPR1_RS00625	SM00475	5'-3' exonuclease
ALPR1_RS00625	SM00482	DNA polymerase A domain
ALPR1_RS00630	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS00670	SM00886	Stress responsive A/B Barrel Domain
ALPR1_RS00730	SM00422	helix_turn_helix, mercury resistance
ALPR1_RS00995	SM01005	Alanine racemase, C-terminal domain
ALPR1_RS01010	SM00861	Transketolase, pyrimidine binding domain
ALPR1_RS01020	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ALPR1_RS01040	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALPR1_RS01055	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS01060	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ALPR1_RS01100	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALPR1_RS01120	SM01228	ALPR1_RS01120
ALPR1_RS01180	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ALPR1_RS01180	SM00534	ATPase domain of DNA mismatch repair MUTS family
ALPR1_RS01185	SM00421	helix_turn_helix, Lux Regulon
ALPR1_RS01225	SM00957	SecA DEAD-like domain
ALPR1_RS01225	SM00958	SecA preprotein cross-linking domain
ALPR1_RS01250	SM00421	helix_turn_helix, Lux Regulon
ALPR1_RS01250	SM00448	cheY-homologous receiver domain
ALPR1_RS01265	SM00829	Enoylreductase
ALPR1_RS01280	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALPR1_RS01395	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS01450	SM00363	S4 RNA-binding domain
ALPR1_RS01460	SM00487	DEAD-like helicases superfamily
ALPR1_RS01460	SM00490	helicase superfamily c-terminal domain
ALPR1_RS01460	SM00982	ALPR1_RS01460
ALPR1_RS01460	SM01058	CarD-like/TRCF domain
ALPR1_RS01480	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ALPR1_RS01500	SM00852	Probable molybdopterin binding domain
ALPR1_RS01520	SM00450	Rhodanese Homology Domain
ALPR1_RS01530	SM00852	Probable molybdopterin binding domain
ALPR1_RS01535	SM00729	Elongator protein 3, MiaB family, Radical SAM
ALPR1_RS01555	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
ALPR1_RS01565	SM00421	helix_turn_helix, Lux Regulon
ALPR1_RS01565	SM00448	cheY-homologous receiver domain
ALPR1_RS01570	SM00387	Histidine kinase-like ATPases
ALPR1_RS01590	SM00562	ALPR1_RS01590
ALPR1_RS01620	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ALPR1_RS01620	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ALPR1_RS01625	SM01133	ALPR1_RS01625
ALPR1_RS01730	SM00116	Domain in cystathionine beta-synthase and other proteins.
ALPR1_RS01730	SM01091	Transporter associated domain
ALPR1_RS01740	SM00478	endonuclease III
ALPR1_RS01745	SM00411	bacterial (prokaryotic) histone like domain
ALPR1_RS01750	SM00028	Tetratricopeptide repeats
ALPR1_RS01755	SM00316	Ribosomal protein S1-like RNA-binding domain
ALPR1_RS01765	SM00448	cheY-homologous receiver domain
ALPR1_RS01765	SM00850	LytTr DNA-binding domain
ALPR1_RS01785	SM00631	ALPR1_RS01785
ALPR1_RS01815	SM00631	ALPR1_RS01815
ALPR1_RS01820	SM00450	Rhodanese Homology Domain
ALPR1_RS01905	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS01905	SM00387	Histidine kinase-like ATPases
ALPR1_RS01905	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS01905	SM00448	cheY-homologous receiver domain
ALPR1_RS01970	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ALPR1_RS01990	SM01005	Alanine racemase, C-terminal domain
ALPR1_RS02035	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
ALPR1_RS02035	SM00448	cheY-homologous receiver domain
ALPR1_RS02040	SM00448	cheY-homologous receiver domain
ALPR1_RS02045	SM00387	Histidine kinase-like ATPases
ALPR1_RS02045	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS02060	SM00028	Tetratricopeptide repeats
ALPR1_RS02060	SM00387	Histidine kinase-like ATPases
ALPR1_RS02065	SM00448	cheY-homologous receiver domain
ALPR1_RS02065	SM00850	LytTr DNA-binding domain
ALPR1_RS02070	SM00028	Tetratricopeptide repeats
ALPR1_RS02070	SM00387	Histidine kinase-like ATPases
ALPR1_RS02070	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS02095	SM00387	Histidine kinase-like ATPases
ALPR1_RS02095	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS02100	SM00387	Histidine kinase-like ATPases
ALPR1_RS02100	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS02130	SM00421	helix_turn_helix, Lux Regulon
ALPR1_RS02130	SM00448	cheY-homologous receiver domain
ALPR1_RS02135	SM00028	Tetratricopeptide repeats
ALPR1_RS02135	SM00387	Histidine kinase-like ATPases
ALPR1_RS02180	SM00028	Tetratricopeptide repeats
ALPR1_RS02180	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
ALPR1_RS02215	SM00478	endonuclease III
ALPR1_RS02215	SM00525	ALPR1_RS02215
ALPR1_RS02230	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ALPR1_RS02310	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ALPR1_RS02315	SM00448	cheY-homologous receiver domain
ALPR1_RS02315	SM00862	Transcriptional regulatory protein, C terminal
ALPR1_RS02320	SM00387	Histidine kinase-like ATPases
ALPR1_RS02320	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS02335	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ALPR1_RS02360	SM00897	FIST N domain
ALPR1_RS02395	SM00487	DEAD-like helicases superfamily
ALPR1_RS02395	SM00490	helicase superfamily c-terminal domain
ALPR1_RS02400	SM00670	Large family of predicted nucleotide-binding domains
ALPR1_RS02410	SM00448	cheY-homologous receiver domain
ALPR1_RS02410	SM00850	LytTr DNA-binding domain
ALPR1_RS02415	SM00448	cheY-homologous receiver domain
ALPR1_RS02415	SM00850	LytTr DNA-binding domain
ALPR1_RS02425	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS02460	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS02505	SM00280	Kazal type serine protease inhibitors
ALPR1_RS02520	SM00937	ALPR1_RS02520
ALPR1_RS02550	SM00191	Integrin alpha (beta-propellor repeats).
ALPR1_RS02660	SM00938	Nitrogen regulatory protein P-II
ALPR1_RS02680	SM00028	Tetratricopeptide repeats
ALPR1_RS02750	SM00812	Alpha-L-fucosidase
ALPR1_RS02820	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ALPR1_RS02845	SM00479	ALPR1_RS02845
ALPR1_RS02850	SM00100	Cyclic nucleotide-monophosphate binding domain
ALPR1_RS02850	SM00116	Domain in cystathionine beta-synthase and other proteins.
ALPR1_RS02885	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS02900	SM01350	ALPR1_RS02900
ALPR1_RS02970	SM00387	Histidine kinase-like ATPases
ALPR1_RS02975	SM00421	helix_turn_helix, Lux Regulon
ALPR1_RS02975	SM00448	cheY-homologous receiver domain
ALPR1_RS03040	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS03100	SM00116	Domain in cystathionine beta-synthase and other proteins.
ALPR1_RS03100	SM01240	ALPR1_RS03100
ALPR1_RS03200	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS03215	SM00812	Alpha-L-fucosidase
ALPR1_RS03260	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ALPR1_RS03275	SM00450	Rhodanese Homology Domain
ALPR1_RS03290	SM00421	helix_turn_helix, Lux Regulon
ALPR1_RS03290	SM00448	cheY-homologous receiver domain
ALPR1_RS03295	SM00028	Tetratricopeptide repeats
ALPR1_RS03310	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS03330	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
ALPR1_RS03330	SM01209	ALPR1_RS03330
ALPR1_RS03345	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ALPR1_RS03390	SM00564	beta-propeller repeat
ALPR1_RS03395	SM00244	prohibitin homologues
ALPR1_RS03400	SM00244	prohibitin homologues
ALPR1_RS03405	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS03455	SM00867	YceI-like domain 
ALPR1_RS03460	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS03495	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ALPR1_RS03520	SM01130	ALPR1_RS03520
ALPR1_RS03525	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS03545	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS03675	SM00248	ankyrin repeats
ALPR1_RS03680	SM00028	Tetratricopeptide repeats
ALPR1_RS03680	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS03695	SM00829	Enoylreductase
ALPR1_RS03700	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
ALPR1_RS03750	SM00843	ALPR1_RS03750
ALPR1_RS03830	SM00932	Scaffold protein Nfu/NifU N terminal
ALPR1_RS03870	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ALPR1_RS03955	SM00861	Transketolase, pyrimidine binding domain
ALPR1_RS04025	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS04025	SM01086	C-terminal, D2-small domain, of ClpB protein
ALPR1_RS04145	SM00493	ALPR1_RS04145
ALPR1_RS04220	SM00563	Phosphate acyltransferases
ALPR1_RS04255	SM00226	Low molecular weight phosphatase family
ALPR1_RS04310	SM00487	DEAD-like helicases superfamily
ALPR1_RS04310	SM00490	helicase superfamily c-terminal domain
ALPR1_RS04325	SM00729	Elongator protein 3, MiaB family, Radical SAM
ALPR1_RS04395	SM00271	DnaJ molecular chaperone homology domain
ALPR1_RS04405	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS04420	SM00387	Histidine kinase-like ATPases
ALPR1_RS04460	SM00900	ALPR1_RS04460
ALPR1_RS04490	SM00450	Rhodanese Homology Domain
ALPR1_RS04500	SM00479	ALPR1_RS04500
ALPR1_RS04500	SM00481	DNA polymerase alpha chain like domain
ALPR1_RS04570	SM00917	LeuA allosteric (dimerisation) domain
ALPR1_RS04585	SM00917	LeuA allosteric (dimerisation) domain
ALPR1_RS04590	SM01329	ALPR1_RS04590
ALPR1_RS04720	SM00244	prohibitin homologues
ALPR1_RS04725	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS04725	SM00962	SRP54-type protein, GTPase domain
ALPR1_RS04725	SM00963	SRP54-type protein, helical bundle domain
ALPR1_RS04750	SM01004	Delta-aminolevulinic acid dehydratase
ALPR1_RS04770	SM00883	Chaperonin 10 Kd subunit
ALPR1_RS04805	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS04855	SM00849	Metallo-beta-lactamase superfamily
ALPR1_RS04860	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS04875	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS04965	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS05020	SM00487	DEAD-like helicases superfamily
ALPR1_RS05020	SM00490	helicase superfamily c-terminal domain
ALPR1_RS05040	SM00028	Tetratricopeptide repeats
ALPR1_RS05060	SM00903	Flavin reductase like domain
ALPR1_RS05075	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
ALPR1_RS05140	SM00710	Parallel beta-helix repeats
ALPR1_RS05175	SM00331	Sigma factor PP2C-like phosphatases
ALPR1_RS05195	SM00870	ALPR1_RS05195
ALPR1_RS05365	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALPR1_RS05425	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
ALPR1_RS05450	SM00850	LytTr DNA-binding domain
ALPR1_RS05510	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ALPR1_RS05520	SM00028	Tetratricopeptide repeats
ALPR1_RS05640	SM00345	helix_turn_helix gluconate operon transcriptional repressor
ALPR1_RS05645	SM01007	Class II Aldolase and Adducin N-terminal domain
ALPR1_RS05690	SM01007	Class II Aldolase and Adducin N-terminal domain
ALPR1_RS05770	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ALPR1_RS05780	SM00354	helix_turn _helix lactose operon repressor
ALPR1_RS05790	SM00840	ALPR1_RS05790
ALPR1_RS05795	SM00798	AICARFT/IMPCHase bienzyme
ALPR1_RS05795	SM00851	MGS-like domain
ALPR1_RS05825	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ALPR1_RS05910	SM00644	ALPR1_RS05910
ALPR1_RS05915	SM00420	helix_turn_helix, Deoxyribose operon repressor
ALPR1_RS05915	SM01134	ALPR1_RS05915
ALPR1_RS05970	SM00448	cheY-homologous receiver domain
ALPR1_RS05970	SM00862	Transcriptional regulatory protein, C terminal
ALPR1_RS05975	SM00387	Histidine kinase-like ATPases
ALPR1_RS05975	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS06090	SM00633	Glycosyl hydrolase family 10
ALPR1_RS06100	SM00822	ALPR1_RS06100
ALPR1_RS06105	SM00849	Metallo-beta-lactamase superfamily
ALPR1_RS06185	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS06185	SM01086	C-terminal, D2-small domain, of ClpB protein
ALPR1_RS06195	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ALPR1_RS06195	SM00481	DNA polymerase alpha chain like domain
ALPR1_RS06225	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS06245	SM00563	Phosphate acyltransferases
ALPR1_RS06250	SM00316	Ribosomal protein S1-like RNA-binding domain
ALPR1_RS06345	SM00387	Histidine kinase-like ATPases
ALPR1_RS06345	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS06390	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS06420	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS06420	SM00962	SRP54-type protein, GTPase domain
ALPR1_RS06420	SM00963	SRP54-type protein, helical bundle domain
ALPR1_RS06425	SM00448	cheY-homologous receiver domain
ALPR1_RS06425	SM00850	LytTr DNA-binding domain
ALPR1_RS06440	SM00861	Transketolase, pyrimidine binding domain
ALPR1_RS06450	SM00450	Rhodanese Homology Domain
ALPR1_RS06525	SM00116	Domain in cystathionine beta-synthase and other proteins.
ALPR1_RS06545	SM01400	ALPR1_RS06545
ALPR1_RS06550	SM00631	ALPR1_RS06550
ALPR1_RS06605	SM00986	Uracil DNA glycosylase superfamily
ALPR1_RS06605	SM00987	UreE urease accessory protein, C-terminal domain 
ALPR1_RS06625	SM00470	ParB-like nuclease domain
ALPR1_RS06670	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALPR1_RS06675	SM00028	Tetratricopeptide repeats
ALPR1_RS06690	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ALPR1_RS06690	SM00245	tail specific protease
ALPR1_RS06695	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS06790	SM00245	tail specific protease
ALPR1_RS06795	SM00886	Stress responsive A/B Barrel Domain
ALPR1_RS06810	SM00838	Elongation factor G C-terminus
ALPR1_RS06865	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS06935	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS06935	SM00994	ClpX C4-type zinc finger
ALPR1_RS06935	SM01086	C-terminal, D2-small domain, of ClpB protein
ALPR1_RS06955	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALPR1_RS06955	SM00954	Region found in RelA / SpoT proteins
ALPR1_RS06975	SM00788	Adenylosuccinate synthetase
ALPR1_RS06980	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ALPR1_RS07050	SM00729	Elongator protein 3, MiaB family, Radical SAM
ALPR1_RS07055	SM00327	von Willebrand factor (vWF) type A domain
ALPR1_RS07075	SM00463	Small MutS-related domain
ALPR1_RS07075	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
ALPR1_RS07075	SM00534	ATPase domain of DNA mismatch repair MUTS family
ALPR1_RS07085	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS07105	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALPR1_RS07110	SM00448	cheY-homologous receiver domain
ALPR1_RS07120	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ALPR1_RS07120	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ALPR1_RS07125	SM00448	cheY-homologous receiver domain
ALPR1_RS07140	SM00387	Histidine kinase-like ATPases
ALPR1_RS07140	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS07145	SM00387	Histidine kinase-like ATPases
ALPR1_RS07145	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS07145	SM00448	cheY-homologous receiver domain
ALPR1_RS07165	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS07220	SM00387	Histidine kinase-like ATPases
ALPR1_RS07220	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS07220	SM00448	cheY-homologous receiver domain
ALPR1_RS07225	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS07225	SM00448	cheY-homologous receiver domain
ALPR1_RS07250	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ALPR1_RS07340	SM00448	cheY-homologous receiver domain
ALPR1_RS07340	SM00850	LytTr DNA-binding domain
ALPR1_RS07365	SM01321	ALPR1_RS07365
ALPR1_RS07370	SM00812	Alpha-L-fucosidase
ALPR1_RS07415	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS07450	SM00028	Tetratricopeptide repeats
ALPR1_RS07475	SM00465	GIY-YIG type nucleases (URI domain)
ALPR1_RS07480	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS07500	SM00487	DEAD-like helicases superfamily
ALPR1_RS07500	SM00490	helicase superfamily c-terminal domain
ALPR1_RS07560	SM00448	cheY-homologous receiver domain
ALPR1_RS07560	SM00862	Transcriptional regulatory protein, C terminal
ALPR1_RS07565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ALPR1_RS07565	SM00387	Histidine kinase-like ATPases
ALPR1_RS07565	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS07620	SM01235	ALPR1_RS07620
ALPR1_RS07625	SM01235	ALPR1_RS07625
ALPR1_RS07695	SM00316	Ribosomal protein S1-like RNA-binding domain
ALPR1_RS07695	SM00732	Likely ribonuclease with RNase H fold.
ALPR1_RS07715	SM00530	Helix-turn-helix XRE-family like proteins 
ALPR1_RS07730	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
ALPR1_RS07810	SM00448	cheY-homologous receiver domain
ALPR1_RS07820	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS07865	SM01209	ALPR1_RS07865
ALPR1_RS07865	SM01210	ALPR1_RS07865
ALPR1_RS07870	SM00341	Helicase and RNase D C-terminal
ALPR1_RS07870	SM00487	DEAD-like helicases superfamily
ALPR1_RS07870	SM00490	helicase superfamily c-terminal domain
ALPR1_RS07870	SM00956	ALPR1_RS07870
ALPR1_RS07875	SM00116	Domain in cystathionine beta-synthase and other proteins.
ALPR1_RS07885	SM00967	RNA 2'-O ribose methyltransferase substrate binding
ALPR1_RS07910	SM00450	Rhodanese Homology Domain
ALPR1_RS07910	SM00849	Metallo-beta-lactamase superfamily
ALPR1_RS07950	SM00487	DEAD-like helicases superfamily
ALPR1_RS07950	SM00490	helicase superfamily c-terminal domain
ALPR1_RS07960	SM00357	Cold shock protein domain
ALPR1_RS07975	SM00886	Stress responsive A/B Barrel Domain
ALPR1_RS07995	SM00387	Histidine kinase-like ATPases
ALPR1_RS08000	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS08000	SM00448	cheY-homologous receiver domain
ALPR1_RS08010	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS08255	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS08275	SM00986	Uracil DNA glycosylase superfamily
ALPR1_RS08275	SM00987	UreE urease accessory protein, C-terminal domain 
ALPR1_RS08370	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS08370	SM00387	Histidine kinase-like ATPases
ALPR1_RS08370	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS08370	SM00448	cheY-homologous receiver domain
ALPR1_RS08410	SM00354	helix_turn _helix lactose operon repressor
ALPR1_RS08485	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS08515	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ALPR1_RS08580	SM00014	Acid phosphatase homologues
ALPR1_RS08645	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS08655	SM00344	helix_turn_helix ASNC type
ALPR1_RS08665	SM00631	ALPR1_RS08665
ALPR1_RS08710	SM00984	UDP binding domain
ALPR1_RS08775	SM00984	UDP binding domain
ALPR1_RS08800	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS08905	SM00858	ALPR1_RS08905
ALPR1_RS08915	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
ALPR1_RS09055	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS09165	SM00710	Parallel beta-helix repeats
ALPR1_RS09220	SM00923	MbtH-like protein
ALPR1_RS09250	SM00091	PAS domain
ALPR1_RS09285	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ALPR1_RS09285	SM00091	PAS domain
ALPR1_RS09285	SM00387	Histidine kinase-like ATPases
ALPR1_RS09285	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS09285	SM00448	cheY-homologous receiver domain
ALPR1_RS09290	SM00448	cheY-homologous receiver domain
ALPR1_RS09290	SM00850	LytTr DNA-binding domain
ALPR1_RS09305	SM00448	cheY-homologous receiver domain
ALPR1_RS09460	SM00984	UDP binding domain
ALPR1_RS09465	SM00984	UDP binding domain
ALPR1_RS09515	SM00465	GIY-YIG type nucleases (URI domain)
ALPR1_RS09515	SM00479	ALPR1_RS09515
ALPR1_RS09560	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
ALPR1_RS09560	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
ALPR1_RS09560	SM00493	ALPR1_RS09560
ALPR1_RS09565	SM00855	Phosphoglycerate mutase family
ALPR1_RS09615	SM00487	DEAD-like helicases superfamily
ALPR1_RS09615	SM00490	helicase superfamily c-terminal domain
ALPR1_RS09640	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
ALPR1_RS09645	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS09695	SM00849	Metallo-beta-lactamase superfamily
ALPR1_RS09705	SM00563	Phosphate acyltransferases
ALPR1_RS09730	SM00387	Histidine kinase-like ATPases
ALPR1_RS09730	SM00433	TopoisomeraseII
ALPR1_RS09775	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS09850	SM01266	ALPR1_RS09850
ALPR1_RS09870	SM00354	helix_turn _helix lactose operon repressor
ALPR1_RS09895	SM00981	ALPR1_RS09895
ALPR1_RS09905	SM00448	cheY-homologous receiver domain
ALPR1_RS09905	SM00850	LytTr DNA-binding domain
ALPR1_RS09915	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
ALPR1_RS09925	SM00797	Allophanate hydrolase subunit 2
ALPR1_RS09930	SM00796	Allophanate hydrolase subunit 1
ALPR1_RS09950	SM00387	Histidine kinase-like ATPases
ALPR1_RS09950	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS09950	SM00448	cheY-homologous receiver domain
ALPR1_RS09955	SM00448	cheY-homologous receiver domain
ALPR1_RS09975	SM00448	cheY-homologous receiver domain
ALPR1_RS09980	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS09980	SM00448	cheY-homologous receiver domain
ALPR1_RS10000	SM00529	Helix-turn-helix diphteria tox regulatory element
ALPR1_RS10060	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS10135	SM00237	Domains in Na-Ca exchangers and integrin-beta4
ALPR1_RS10145	SM00641	Glycosyl hydrolases family 25
ALPR1_RS10225	SM00640	Glycosyl hydrolases family 32
ALPR1_RS10350	SM00479	ALPR1_RS10350
ALPR1_RS10370	SM00829	Enoylreductase
ALPR1_RS10385	SM00893	Electron transfer flavoprotein domain
ALPR1_RS10390	SM00893	Electron transfer flavoprotein domain
ALPR1_RS10510	SM00387	Histidine kinase-like ATPases
ALPR1_RS10510	SM00433	TopoisomeraseII
ALPR1_RS10515	SM00434	DNA Topoisomerase IV
ALPR1_RS10595	SM00935	Outer membrane protein (OmpH-like)
ALPR1_RS10640	SM00448	cheY-homologous receiver domain
ALPR1_RS10695	SM00563	Phosphate acyltransferases
ALPR1_RS10730	SM00460	Transglutaminase/protease-like homologues
ALPR1_RS10740	SM00460	Transglutaminase/protease-like homologues
ALPR1_RS10865	SM01321	ALPR1_RS10865
ALPR1_RS10875	SM00554	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
ALPR1_RS10885	SM00487	DEAD-like helicases superfamily
ALPR1_RS10885	SM00490	helicase superfamily c-terminal domain
ALPR1_RS10900	SM00968	SMC proteins Flexible Hinge Domain
ALPR1_RS10955	SM00448	cheY-homologous receiver domain
ALPR1_RS10985	SM00650	Ribosomal RNA adenine dimethylases
ALPR1_RS11025	SM00487	DEAD-like helicases superfamily
ALPR1_RS11025	SM00490	helicase superfamily c-terminal domain
ALPR1_RS11065	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS11090	SM00858	ALPR1_RS11090
ALPR1_RS11130	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ALPR1_RS11145	SM00567	E-Z type HEAT repeats
ALPR1_RS11160	SM00882	Coenzyme A transferase
ALPR1_RS11165	SM00882	Coenzyme A transferase
ALPR1_RS11170	SM00904	Riboflavin kinase
ALPR1_RS11215	SM00947	Carbonic anhydrase
ALPR1_RS11250	SM00859	Semialdehyde dehydrogenase, NAD binding domain
ALPR1_RS11335	SM00487	DEAD-like helicases superfamily
ALPR1_RS11335	SM00490	helicase superfamily c-terminal domain
ALPR1_RS11335	SM00847	Helicase associated domain (HA2)  Add an annotation
ALPR1_RS11355	SM00487	DEAD-like helicases superfamily
ALPR1_RS11355	SM00490	helicase superfamily c-terminal domain
ALPR1_RS11400	SM00636	ALPR1_RS11400
ALPR1_RS11425	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ALPR1_RS11525	SM00850	LytTr DNA-binding domain
ALPR1_RS11580	SM00823	Phosphopantetheine attachment site
ALPR1_RS11620	SM00823	Phosphopantetheine attachment site
ALPR1_RS11635	SM00245	tail specific protease
ALPR1_RS11640	SM00448	cheY-homologous receiver domain
ALPR1_RS11640	SM00850	LytTr DNA-binding domain
ALPR1_RS11645	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS11725	SM00257	Lysin motif
ALPR1_RS11740	SM00316	Ribosomal protein S1-like RNA-binding domain
ALPR1_RS11740	SM00322	K homology RNA-binding domain
ALPR1_RS11745	SM01387	ALPR1_RS11745
ALPR1_RS11795	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ALPR1_RS11850	SM00028	Tetratricopeptide repeats
ALPR1_RS11865	SM00529	Helix-turn-helix diphteria tox regulatory element
ALPR1_RS11865	SM00899	ALPR1_RS11865
ALPR1_RS11920	SM00487	DEAD-like helicases superfamily
ALPR1_RS11950	SM00670	Large family of predicted nucleotide-binding domains
ALPR1_RS11975	SM00758	ALPR1_RS11975
ALPR1_RS12035	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS12040	SM00028	Tetratricopeptide repeats
ALPR1_RS12120	SM00421	helix_turn_helix, Lux Regulon
ALPR1_RS12145	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ALPR1_RS12150	SM00704	CDGSH-type zinc finger. Function unknown.
ALPR1_RS12220	SM00825	Beta-ketoacyl synthase
ALPR1_RS12230	SM00829	Enoylreductase
ALPR1_RS12235	SM00822	ALPR1_RS12235
ALPR1_RS12275	SM00028	Tetratricopeptide repeats
ALPR1_RS12285	SM00028	Tetratricopeptide repeats
ALPR1_RS12320	SM00028	Tetratricopeptide repeats
ALPR1_RS12325	SM00434	DNA Topoisomerase IV
ALPR1_RS12405	SM00271	DnaJ molecular chaperone homology domain
ALPR1_RS12520	SM00878	Biotin carboxylase C-terminal domain
ALPR1_RS12565	SM00530	Helix-turn-helix XRE-family like proteins 
ALPR1_RS12585	SM00845	GatB domain
ALPR1_RS12590	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
ALPR1_RS12645	SM00849	Metallo-beta-lactamase superfamily
ALPR1_RS12725	SM00836	DALR anticodon binding domain
ALPR1_RS12725	SM01016	Arginyl tRNA synthetase N terminal dom
ALPR1_RS12770	SM00028	Tetratricopeptide repeats
ALPR1_RS12805	SM00822	ALPR1_RS12805
ALPR1_RS12810	SM00852	Probable molybdopterin binding domain
ALPR1_RS12820	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ALPR1_RS12820	SM00091	PAS domain
ALPR1_RS12820	SM00387	Histidine kinase-like ATPases
ALPR1_RS12820	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS12820	SM00448	cheY-homologous receiver domain
ALPR1_RS12875	SM00116	Domain in cystathionine beta-synthase and other proteins.
ALPR1_RS12875	SM00924	MgtE intracellular N domain
ALPR1_RS12880	SM00650	Ribosomal RNA adenine dimethylases
ALPR1_RS12905	SM00841	Elongation factor P, C-terminal
ALPR1_RS12905	SM01185	ALPR1_RS12905
ALPR1_RS12915	SM00878	Biotin carboxylase C-terminal domain
ALPR1_RS12950	SM00028	Tetratricopeptide repeats
ALPR1_RS12990	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS12990	SM00448	cheY-homologous receiver domain
ALPR1_RS13005	SM00861	Transketolase, pyrimidine binding domain
ALPR1_RS13010	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ALPR1_RS13010	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ALPR1_RS13085	SM00861	Transketolase, pyrimidine binding domain
ALPR1_RS13120	SM00530	Helix-turn-helix XRE-family like proteins 
ALPR1_RS13155	SM00631	ALPR1_RS13155
ALPR1_RS13170	SM00631	ALPR1_RS13170
ALPR1_RS13210	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALPR1_RS13225	SM00327	von Willebrand factor (vWF) type A domain
ALPR1_RS13270	SM00487	DEAD-like helicases superfamily
ALPR1_RS13270	SM00490	helicase superfamily c-terminal domain
ALPR1_RS13290	SM00422	helix_turn_helix, mercury resistance
ALPR1_RS13320	SM01018	B12 binding domain
ALPR1_RS13335	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ALPR1_RS13335	SM00091	PAS domain
ALPR1_RS13335	SM00387	Histidine kinase-like ATPases
ALPR1_RS13335	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS13380	SM00257	Lysin motif
ALPR1_RS13395	SM00563	Phosphate acyltransferases
ALPR1_RS13410	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS13430	SM00937	ALPR1_RS13430
ALPR1_RS13455	SM00344	helix_turn_helix ASNC type
ALPR1_RS13485	SM00419	helix_turn_helix, cAMP Regulatory protein
ALPR1_RS13515	SM00899	ALPR1_RS13515
ALPR1_RS13555	SM00851	MGS-like domain
ALPR1_RS13575	SM00028	Tetratricopeptide repeats
ALPR1_RS13575	SM00387	Histidine kinase-like ATPases
ALPR1_RS13575	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS13595	SM00400	zinc finger
ALPR1_RS13595	SM00493	ALPR1_RS13595
ALPR1_RS13615	SM00740	ALPR1_RS13615
ALPR1_RS13625	SM00450	Rhodanese Homology Domain
ALPR1_RS13685	SM00448	cheY-homologous receiver domain
ALPR1_RS13685	SM00850	LytTr DNA-binding domain
ALPR1_RS13695	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS13700	SM00448	cheY-homologous receiver domain
ALPR1_RS13700	SM00862	Transcriptional regulatory protein, C terminal
ALPR1_RS13720	SM00867	YceI-like domain 
ALPR1_RS13730	SM00245	tail specific protease
ALPR1_RS13775	SM00062	Bacterial periplasmic substrate-binding proteins
ALPR1_RS13775	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
ALPR1_RS13820	SM00387	Histidine kinase-like ATPases
ALPR1_RS13840	SM00822	ALPR1_RS13840
ALPR1_RS13880	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS13885	SM00028	Tetratricopeptide repeats
ALPR1_RS13885	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS13890	SM00829	Enoylreductase
ALPR1_RS13980	SM00867	YceI-like domain 
ALPR1_RS13995	SM00729	Elongator protein 3, MiaB family, Radical SAM
ALPR1_RS14000	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS14030	SM00883	Chaperonin 10 Kd subunit
ALPR1_RS14040	SM00448	cheY-homologous receiver domain
ALPR1_RS14120	SM00812	Alpha-L-fucosidase
ALPR1_RS14135	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ALPR1_RS14165	SM00862	Transcriptional regulatory protein, C terminal
ALPR1_RS14190	SM00901	ALPR1_RS14190
ALPR1_RS14325	SM00448	cheY-homologous receiver domain
ALPR1_RS14330	SM00448	cheY-homologous receiver domain
ALPR1_RS14365	SM00825	Beta-ketoacyl synthase
ALPR1_RS14370	SM00358	Double-stranded RNA binding motif
ALPR1_RS14370	SM00535	Ribonuclease III family
ALPR1_RS14385	SM01234	ALPR1_RS14385
ALPR1_RS14425	SM00028	Tetratricopeptide repeats
ALPR1_RS14430	SM00091	PAS domain
ALPR1_RS14430	SM00387	Histidine kinase-like ATPases
ALPR1_RS14430	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS14430	SM00448	cheY-homologous receiver domain
ALPR1_RS14445	SM00387	Histidine kinase-like ATPases
ALPR1_RS14445	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS14460	SM00712	DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
ALPR1_RS14485	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS14595	SM01230	ALPR1_RS14595
ALPR1_RS14600	SM00729	Elongator protein 3, MiaB family, Radical SAM
ALPR1_RS14605	SM00642	Alpha-amylase domain
ALPR1_RS14610	SM00046	Diacylglycerol kinase catalytic domain (presumed)
ALPR1_RS14640	SM00871	Bacterial transcription activator, effector binding domain
ALPR1_RS14675	SM00855	Phosphoglycerate mutase family
ALPR1_RS14755	SM00530	Helix-turn-helix XRE-family like proteins 
ALPR1_RS14765	SM00822	ALPR1_RS14765
ALPR1_RS14855	SM00100	Cyclic nucleotide-monophosphate binding domain
ALPR1_RS14860	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS14925	SM00905	Dihydroneopterin aldolase
ALPR1_RS14935	SM00320	WD40 repeats
ALPR1_RS14960	SM00646	ALPR1_RS14960
ALPR1_RS14980	SM00448	cheY-homologous receiver domain
ALPR1_RS14995	SM00830	Chorismate mutase type II
ALPR1_RS15025	SM00612	ALPR1_RS15025
ALPR1_RS15065	SM00729	Elongator protein 3, MiaB family, Radical SAM
ALPR1_RS15090	SM00028	Tetratricopeptide repeats
ALPR1_RS15090	SM00220	Serine/Threonine protein kinases, catalytic domain
ALPR1_RS15210	SM00450	Rhodanese Homology Domain
ALPR1_RS15215	SM00100	Cyclic nucleotide-monophosphate binding domain
ALPR1_RS15215	SM00419	helix_turn_helix, cAMP Regulatory protein
ALPR1_RS15255	SM00946	Prolyl-tRNA synthetase, C-terminal
ALPR1_RS15295	SM00530	Helix-turn-helix XRE-family like proteins 
ALPR1_RS15485	SM00530	Helix-turn-helix XRE-family like proteins 
ALPR1_RS15520	SM00028	Tetratricopeptide repeats
ALPR1_RS15520	SM00387	Histidine kinase-like ATPases
ALPR1_RS15520	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS15535	SM00481	DNA polymerase alpha chain like domain
ALPR1_RS15540	SM01321	ALPR1_RS15540
ALPR1_RS15550	SM00953	ALPR1_RS15550
ALPR1_RS15600	SM00028	Tetratricopeptide repeats
ALPR1_RS15615	SM00530	Helix-turn-helix XRE-family like proteins 
ALPR1_RS15635	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS15655	SM00255	Toll - interleukin 1 - resistance
ALPR1_RS15685	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
ALPR1_RS15685	SM00387	Histidine kinase-like ATPases
ALPR1_RS15685	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS15690	SM00448	cheY-homologous receiver domain
ALPR1_RS15690	SM00862	Transcriptional regulatory protein, C terminal
ALPR1_RS15740	SM00278	Helix-hairpin-helix DNA-binding motif class 1
ALPR1_RS15740	SM00292	breast cancer carboxy-terminal domain
ALPR1_RS15740	SM00532	Ligase N family
ALPR1_RS15745	SM01130	ALPR1_RS15745
ALPR1_RS15770	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ALPR1_RS15795	SM01211	ALPR1_RS15795
ALPR1_RS15855	SM00364	Leucine-rich repeats, bacterial type
ALPR1_RS15855	SM00369	Leucine-rich repeats, typical (most populated) subfamily
ALPR1_RS15870	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS16035	SM00829	Enoylreductase
ALPR1_RS16180	SM00487	DEAD-like helicases superfamily
ALPR1_RS16180	SM00490	helicase superfamily c-terminal domain
ALPR1_RS16215	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ALPR1_RS16225	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
ALPR1_RS16280	SM01329	ALPR1_RS16280
ALPR1_RS16295	SM00028	Tetratricopeptide repeats
ALPR1_RS16320	SM00257	Lysin motif
ALPR1_RS16330	SM00919	Malic enzyme, NAD binding domain
ALPR1_RS16330	SM01274	ALPR1_RS16330
ALPR1_RS16385	SM00849	Metallo-beta-lactamase superfamily
ALPR1_RS16430	SM00474	3'-5' exonuclease
ALPR1_RS16470	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALPR1_RS16490	SM00996	S-adenosyl-L-homocysteine hydrolase
ALPR1_RS16490	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
ALPR1_RS16505	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS16535	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS16535	SM00448	cheY-homologous receiver domain
ALPR1_RS16540	SM00387	Histidine kinase-like ATPases
ALPR1_RS16635	SM00507	HNH nucleases
ALPR1_RS16690	SM00028	Tetratricopeptide repeats
ALPR1_RS16745	SM00849	Metallo-beta-lactamase superfamily
ALPR1_RS16745	SM01027	Beta-Casp domain
ALPR1_RS16815	SM00947	Carbonic anhydrase
ALPR1_RS16835	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
ALPR1_RS16865	SM00448	cheY-homologous receiver domain
ALPR1_RS16865	SM00850	LytTr DNA-binding domain
ALPR1_RS16875	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS16895	SM00448	cheY-homologous receiver domain
ALPR1_RS16915	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS16915	SM00448	cheY-homologous receiver domain
ALPR1_RS16960	SM00530	Helix-turn-helix XRE-family like proteins 
ALPR1_RS16990	SM00829	Enoylreductase
ALPR1_RS17040	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17055	SM00448	cheY-homologous receiver domain
ALPR1_RS17055	SM00850	LytTr DNA-binding domain
ALPR1_RS17065	SM00028	Tetratricopeptide repeats
ALPR1_RS17065	SM00387	Histidine kinase-like ATPases
ALPR1_RS17075	SM00098	Alkaline phosphatase homologues
ALPR1_RS17120	SM01130	ALPR1_RS17120
ALPR1_RS17165	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
ALPR1_RS17165	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
ALPR1_RS17195	SM01235	ALPR1_RS17195
ALPR1_RS17220	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ALPR1_RS17240	SM00357	Cold shock protein domain
ALPR1_RS17245	SM00855	Phosphoglycerate mutase family
ALPR1_RS17255	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17255	SM01086	C-terminal, D2-small domain, of ClpB protein
ALPR1_RS17260	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17260	SM00464	Found in ATP-dependent protease La (LON)
ALPR1_RS17265	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ALPR1_RS17275	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ALPR1_RS17310	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17315	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALPR1_RS17375	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17375	SM00760	Bacterial dnaA protein helix-turn-helix domain
ALPR1_RS17385	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17430	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17435	SM00387	Histidine kinase-like ATPases
ALPR1_RS17435	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS17435	SM00448	cheY-homologous receiver domain
ALPR1_RS17440	SM00387	Histidine kinase-like ATPases
ALPR1_RS17440	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS17445	SM00881	CoA binding domain
ALPR1_RS17455	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17505	SM00710	Parallel beta-helix repeats
ALPR1_RS17520	SM00354	helix_turn _helix lactose operon repressor
ALPR1_RS17540	SM00322	K homology RNA-binding domain
ALPR1_RS17540	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
ALPR1_RS17555	SM00873	B3/4 domain
ALPR1_RS17555	SM00874	tRNA synthetase B5 domain
ALPR1_RS17555	SM00896	Ferredoxin-fold anticodon binding domain
ALPR1_RS17605	SM00829	Enoylreductase
ALPR1_RS17640	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS17695	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS17710	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17725	SM00448	cheY-homologous receiver domain
ALPR1_RS17725	SM00850	LytTr DNA-binding domain
ALPR1_RS17755	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17765	SM00448	cheY-homologous receiver domain
ALPR1_RS17765	SM00862	Transcriptional regulatory protein, C terminal
ALPR1_RS17770	SM00387	Histidine kinase-like ATPases
ALPR1_RS17770	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS17800	SM01011	Aminopeptidase P, N-terminal domain
ALPR1_RS17815	SM00257	Lysin motif
ALPR1_RS17830	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17870	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17890	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS17925	SM00822	ALPR1_RS17925
ALPR1_RS17945	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
ALPR1_RS18060	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
ALPR1_RS18085	SM00732	Likely ribonuclease with RNase H fold.
ALPR1_RS18095	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
ALPR1_RS18095	SM00245	tail specific protease
ALPR1_RS18195	SM00316	Ribosomal protein S1-like RNA-binding domain
ALPR1_RS18195	SM00357	Cold shock protein domain
ALPR1_RS18195	SM00955	ALPR1_RS18195
ALPR1_RS18275	SM00245	tail specific protease
ALPR1_RS18320	SM00729	Elongator protein 3, MiaB family, Radical SAM
ALPR1_RS18330	SM00861	Transketolase, pyrimidine binding domain
ALPR1_RS18415	SM00867	YceI-like domain 
ALPR1_RS18420	SM00347	helix_turn_helix multiple antibiotic resistance protein
ALPR1_RS18455	SM01409	ALPR1_RS18455
ALPR1_RS18475	SM00977	TilS substrate C-terminal domain
ALPR1_RS18480	SM00100	Cyclic nucleotide-monophosphate binding domain
ALPR1_RS18545	SM01192	ALPR1_RS18545
ALPR1_RS18545	SM01193	ALPR1_RS18545
ALPR1_RS18550	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
ALPR1_RS18560	SM00662	RNA polymerases D
ALPR1_RS18565	SM00363	S4 RNA-binding domain
ALPR1_RS18565	SM01390	ALPR1_RS18565
ALPR1_RS18580	SM00316	Ribosomal protein S1-like RNA-binding domain
ALPR1_RS18635	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ALPR1_RS18640	SM01374	ALPR1_RS18640
ALPR1_RS18660	SM00322	K homology RNA-binding domain
ALPR1_RS18675	SM01382	ALPR1_RS18675
ALPR1_RS18675	SM01383	ALPR1_RS18675
ALPR1_RS18695	SM01403	ALPR1_RS18695
ALPR1_RS18700	SM00838	Elongation factor G C-terminus
ALPR1_RS18700	SM00889	Elongation factor G, domain IV
ALPR1_RS18720	SM00663	RNA polymerase I subunit A N-terminus
ALPR1_RS18745	SM00649	Ribosomal protein L11/L12
ALPR1_RS18750	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
ALPR1_RS18750	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
ALPR1_RS18855	SM00644	ALPR1_RS18855
ALPR1_RS18875	SM00072	Guanylate kinase homologues.
ALPR1_RS18980	SM00641	Glycosyl hydrolases family 25
ALPR1_RS19035	SM00480	DNA polymerase III beta subunit
ALPR1_RS19050	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS19080	SM00864	Tubulin/FtsZ family, GTPase domain
ALPR1_RS19080	SM00865	Tubulin/FtsZ family, C-terminal domain
ALPR1_RS19125	SM00740	ALPR1_RS19125
ALPR1_RS19180	SM00855	Phosphoglycerate mutase family
ALPR1_RS19185	SM00420	helix_turn_helix, Deoxyribose operon repressor
ALPR1_RS19185	SM01134	ALPR1_RS19185
ALPR1_RS19260	SM00564	beta-propeller repeat
ALPR1_RS19295	SM00853	MutL C terminal dimerisation domain
ALPR1_RS19295	SM01340	ALPR1_RS19295
ALPR1_RS19405	SM00631	ALPR1_RS19405
ALPR1_RS19410	SM00631	ALPR1_RS19410
ALPR1_RS19480	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS19515	SM00342	helix_turn_helix, arabinose operon control protein
ALPR1_RS19590	SM00465	GIY-YIG type nucleases (URI domain)
ALPR1_RS19635	SM00729	Elongator protein 3, MiaB family, Radical SAM
ALPR1_RS19675	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS19680	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
ALPR1_RS19700	SM01323	ALPR1_RS19700
ALPR1_RS19810	SM00935	Outer membrane protein (OmpH-like)
ALPR1_RS19815	SM00935	Outer membrane protein (OmpH-like)
ALPR1_RS19830	SM00363	S4 RNA-binding domain
ALPR1_RS19845	SM01117	ALPR1_RS19845
ALPR1_RS19870	SM00014	Acid phosphatase homologues
ALPR1_RS19900	SM00316	Ribosomal protein S1-like RNA-binding domain
ALPR1_RS19965	SM00357	Cold shock protein domain
ALPR1_RS19965	SM00382	ATPases associated with a variety of cellular activities
ALPR1_RS19965	SM00959	Rho termination factor, N-terminal domain
ALPR1_RS19985	SM00363	S4 RNA-binding domain
ALPR1_RS20000	SM00487	DEAD-like helicases superfamily
ALPR1_RS20000	SM00490	helicase superfamily c-terminal domain
ALPR1_RS20025	SM00062	Bacterial periplasmic substrate-binding proteins
ALPR1_RS20110	SM00710	Parallel beta-helix repeats
ALPR1_RS20150	SM00028	Tetratricopeptide repeats
ALPR1_RS20165	SM00387	Histidine kinase-like ATPases
ALPR1_RS20165	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS20170	SM00387	Histidine kinase-like ATPases
ALPR1_RS20170	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS20175	SM00387	Histidine kinase-like ATPases
ALPR1_RS20175	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS20180	SM00387	Histidine kinase-like ATPases
ALPR1_RS20185	SM00387	Histidine kinase-like ATPases
ALPR1_RS20185	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS20190	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
ALPR1_RS20255	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
ALPR1_RS20315	SM00387	Histidine kinase-like ATPases
ALPR1_RS20315	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS20390	SM00448	cheY-homologous receiver domain
ALPR1_RS20415	SM00530	Helix-turn-helix XRE-family like proteins 
ALPR1_RS20445	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
ALPR1_RS20445	SM00091	PAS domain
ALPR1_RS20445	SM00387	Histidine kinase-like ATPases
ALPR1_RS20445	SM00388	His Kinase A (phosphoacceptor) domain
ALPR1_RS20445	SM00448	cheY-homologous receiver domain
ALPR1_RS20450	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
