locus-tag class description AFAEC_RS00005 PF11638 DnaA N-terminal domain AFAEC_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix AFAEC_RS00005 PF00308 Bacterial dnaA protein AFAEC_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AFAEC_RS00010 PF02767 DNA polymerase III beta subunit, central domain AFAEC_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AFAEC_RS00015 PF00204 DNA gyrase B AFAEC_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus AFAEC_RS00015 PF01751 Toprim domain AFAEC_RS00020 PF14489 QueF-like protein AFAEC_RS00040 PF13649 Methyltransferase domain AFAEC_RS00045 PF08402 TOBE domain AFAEC_RS00045 PF00005 ABC transporter AFAEC_RS00050 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS00065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFAEC_RS00065 PF03459 TOBE domain AFAEC_RS00075 PF02525 Flavodoxin-like fold AFAEC_RS00080 PF01638 HxlR-like helix-turn-helix AFAEC_RS00085 PF03466 LysR substrate binding domain AFAEC_RS00085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFAEC_RS00100 PF00009 Elongation factor Tu GTP binding domain AFAEC_RS00105 PF01507 Phosphoadenosine phosphosulfate reductase family AFAEC_RS00110 PF01507 Phosphoadenosine phosphosulfate reductase family AFAEC_RS00120 PF00291 Pyridoxal-phosphate dependent enzyme AFAEC_RS00125 PF02082 Transcriptional regulator AFAEC_RS00130 PF01053 Cys/Met metabolism PLP-dependent enzyme AFAEC_RS00145 PF02203 Tar ligand binding domain homologue AFAEC_RS00145 PF00672 HAMP domain AFAEC_RS00145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS00150 PF02321 Outer membrane efflux protein AFAEC_RS00155 PF00873 AcrB/AcrD/AcrF family AFAEC_RS00160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFAEC_RS00160 PF00529 HlyD membrane-fusion protein of T1SS AFAEC_RS00170 PF00672 HAMP domain AFAEC_RS00170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS00170 PF02203 Tar ligand binding domain homologue AFAEC_RS00175 PF07690 Major Facilitator Superfamily AFAEC_RS00180 PF00210 Ferritin-like domain AFAEC_RS00185 PF13419 Haloacid dehalogenase-like hydrolase AFAEC_RS00190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFAEC_RS00190 PF00205 Thiamine pyrophosphate enzyme, central domain AFAEC_RS00190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFAEC_RS00195 PF00171 Aldehyde dehydrogenase family AFAEC_RS00200 PF03167 Uracil DNA glycosylase superfamily AFAEC_RS00220 PF02810 SEC-C motif AFAEC_RS00225 PF01914 MarC family integral membrane protein AFAEC_RS00230 PF03883 Peroxide stress protein YaaA AFAEC_RS00235 PF01544 CorA-like Mg2+ transporter protein AFAEC_RS00240 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AFAEC_RS00245 PF12832 MFS_1 like family AFAEC_RS00255 PF00156 Phosphoribosyl transferase domain AFAEC_RS00260 PF01765 Ribosome recycling factor AFAEC_RS00270 PF03840 Preprotein translocase SecG subunit AFAEC_RS00280 PF17792 ThiD2 family AFAEC_RS00280 PF02581 Thiamine monophosphate synthase AFAEC_RS00285 PF01027 Inhibitor of apoptosis-promoting Bax1 AFAEC_RS00315 PF00700 Bacterial flagellin C-terminal helical region AFAEC_RS00315 PF00669 Bacterial flagellin N-terminal helical region AFAEC_RS00315 PF07196 Flagellin hook IN motif AFAEC_RS00330 PF00465 Iron-containing alcohol dehydrogenase AFAEC_RS00380 PF13193 AMP-binding enzyme C-terminal domain AFAEC_RS00380 PF00501 AMP-binding enzyme AFAEC_RS00400 PF08666 SAF domain AFAEC_RS00400 PF03102 NeuB family AFAEC_RS00410 PF02348 Cytidylyltransferase AFAEC_RS00415 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFAEC_RS00420 PF02719 Polysaccharide biosynthesis protein AFAEC_RS00430 PF00154 recA bacterial DNA recombination protein AFAEC_RS00435 PF03952 Enolase, N-terminal domain AFAEC_RS00435 PF00113 Enolase, C-terminal TIM barrel domain AFAEC_RS00450 PF06968 Biotin and Thiamin Synthesis associated domain AFAEC_RS00450 PF04055 Radical SAM superfamily AFAEC_RS00460 PF13368 Topoisomerase C-terminal repeat AFAEC_RS00460 PF01751 Toprim domain AFAEC_RS00460 PF01131 DNA topoisomerase AFAEC_RS00470 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFAEC_RS00475 PF02621 Menaquinone biosynthesis AFAEC_RS00480 PF01165 Ribosomal protein S21 AFAEC_RS00485 PF01967 MoaC family AFAEC_RS00500 PF00361 Proton-conducting membrane transporter AFAEC_RS00505 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AFAEC_RS00505 PF00361 Proton-conducting membrane transporter AFAEC_RS00510 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFAEC_RS00510 PF00361 Proton-conducting membrane transporter AFAEC_RS00515 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFAEC_RS00520 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFAEC_RS00525 PF12838 4Fe-4S dicluster domain AFAEC_RS00530 PF00146 NADH dehydrogenase AFAEC_RS00535 PF12838 4Fe-4S dicluster domain AFAEC_RS00535 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFAEC_RS00535 PF01568 Molydopterin dinucleotide binding domain AFAEC_RS00535 PF00384 Molybdopterin oxidoreductase AFAEC_RS00535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFAEC_RS00550 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFAEC_RS00555 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFAEC_RS00560 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFAEC_RS00565 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFAEC_RS00570 PF16450 Proteasomal ATPase OB C-terminal domain AFAEC_RS00570 PF00004 ATPase family associated with various cellular activities (AAA) AFAEC_RS00570 PF17758 Proteasomal ATPase OB N-terminal domain AFAEC_RS00585 PF01740 STAS domain AFAEC_RS00585 PF00916 Sulfate permease family AFAEC_RS00600 PF07690 Major Facilitator Superfamily AFAEC_RS00610 PF00529 HlyD membrane-fusion protein of T1SS AFAEC_RS00610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFAEC_RS00615 PF00873 AcrB/AcrD/AcrF family AFAEC_RS00620 PF02321 Outer membrane efflux protein AFAEC_RS00625 PF01261 Xylose isomerase-like TIM barrel AFAEC_RS00630 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFAEC_RS00640 PF02677 Epoxyqueuosine reductase QueH AFAEC_RS00645 PF02684 Lipid-A-disaccharide synthetase AFAEC_RS00650 PF07977 FabA-like domain AFAEC_RS00655 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AFAEC_RS00655 PF00132 Bacterial transferase hexapeptide (six repeats) AFAEC_RS00660 PF10431 C-terminal, D2-small domain, of ClpB protein AFAEC_RS00660 PF07724 AAA domain (Cdc48 subfamily) AFAEC_RS00660 PF06689 ClpX C4-type zinc finger AFAEC_RS00675 PF00677 Lumazine binding domain AFAEC_RS00680 PF00571 CBS domain AFAEC_RS00680 PF03448 MgtE intracellular N domain AFAEC_RS00680 PF01769 Divalent cation transporter AFAEC_RS00685 PF13932 GidA associated domain AFAEC_RS00685 PF01134 Glucose inhibited division protein A AFAEC_RS00695 PF00149 Calcineurin-like phosphoesterase AFAEC_RS00710 PF00145 C-5 cytosine-specific DNA methylase AFAEC_RS00715 PF02899 Phage integrase, N-terminal SAM-like domain AFAEC_RS00715 PF00589 Phage integrase family AFAEC_RS00720 PF02384 N-6 DNA Methylase AFAEC_RS00720 PF12161 HsdM N-terminal domain AFAEC_RS00745 PF00665 Integrase core domain AFAEC_RS00755 PF05958 tRNA (Uracil-5-)-methyltransferase AFAEC_RS00760 PF17191 RecG wedge domain AFAEC_RS00760 PF00270 DEAD/DEAH box helicase AFAEC_RS00760 PF00271 Helicase conserved C-terminal domain AFAEC_RS00770 PF12804 MobA-like NTP transferase domain AFAEC_RS00770 PF14602 Hexapeptide repeat of succinyl-transferase AFAEC_RS00775 PF04127 DNA / pantothenate metabolism flavoprotein AFAEC_RS00775 PF02441 Flavoprotein AFAEC_RS00780 PF01255 Putative undecaprenyl diphosphate synthase AFAEC_RS00795 PF01416 tRNA pseudouridine synthase AFAEC_RS00800 PF01628 HrcA protein C terminal domain AFAEC_RS00805 PF01025 GrpE AFAEC_RS00810 PF00012 Hsp70 protein AFAEC_RS00820 PF03562 MltA specific insert domain AFAEC_RS00820 PF06725 3D domain AFAEC_RS00830 PF02666 Phosphatidylserine decarboxylase AFAEC_RS00835 PF10442 FIST C domain AFAEC_RS00835 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS00835 PF08495 FIST N domain AFAEC_RS00835 PF00563 EAL domain AFAEC_RS00850 PF18030 RimK PreATP-grasp domain AFAEC_RS00850 PF08443 RimK-like ATP-grasp domain AFAEC_RS00860 PF00085 Thioredoxin AFAEC_RS00865 PF11412 Disulphide bond corrector protein DsbC AFAEC_RS00865 PF00085 Thioredoxin AFAEC_RS00865 PF02683 Cytochrome C biogenesis protein transmembrane region AFAEC_RS00875 PF00939 Sodium:sulfate symporter transmembrane region AFAEC_RS00900 PF00072 Response regulator receiver domain AFAEC_RS00900 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS00905 PF13180 PDZ domain AFAEC_RS00905 PF17820 PDZ domain AFAEC_RS00910 PF00920 Dehydratase family AFAEC_RS00940 PF00005 ABC transporter AFAEC_RS00940 PF12704 MacB-like periplasmic core domain AFAEC_RS00940 PF02687 FtsX-like permease family AFAEC_RS00950 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFAEC_RS00955 PF01142 tRNA pseudouridine synthase D (TruD) AFAEC_RS00960 PF15437 Plasminogen-binding protein pgbA C-terminal AFAEC_RS00970 PF13180 PDZ domain AFAEC_RS00970 PF03572 Peptidase family S41 AFAEC_RS00975 PF01259 SAICAR synthetase AFAEC_RS00980 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AFAEC_RS00995 PF01553 Acyltransferase AFAEC_RS01000 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFAEC_RS01005 PF02416 mttA/Hcf106 family AFAEC_RS01010 PF02416 mttA/Hcf106 family AFAEC_RS01015 PF00750 tRNA synthetases class I (R) AFAEC_RS01015 PF05746 DALR anticodon binding domain AFAEC_RS01015 PF03485 Arginyl tRNA synthetase N terminal domain AFAEC_RS01025 PF01467 Cytidylyltransferase-like AFAEC_RS01030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFAEC_RS01030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFAEC_RS01035 PF00162 Phosphoglycerate kinase AFAEC_RS01040 PF00121 Triosephosphate isomerase AFAEC_RS01050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFAEC_RS01050 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFAEC_RS01055 PF01842 ACT domain AFAEC_RS01055 PF01817 Chorismate mutase type II AFAEC_RS01055 PF00800 Prephenate dehydratase AFAEC_RS01060 PF00155 Aminotransferase class I and II AFAEC_RS01065 PF02780 Transketolase, C-terminal domain AFAEC_RS01065 PF02779 Transketolase, pyrimidine binding domain AFAEC_RS01065 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFAEC_RS01070 PF03150 Di-haem cytochrome c peroxidase AFAEC_RS01070 PF00034 Cytochrome c AFAEC_RS01075 PF02545 Maf-like protein AFAEC_RS01085 PF00877 NlpC/P60 family AFAEC_RS01090 PF00877 NlpC/P60 family AFAEC_RS01105 PF01411 tRNA synthetases class II (A) AFAEC_RS01105 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFAEC_RS01105 PF02272 DHHA1 domain AFAEC_RS01110 PF00085 Thioredoxin AFAEC_RS01115 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFAEC_RS01120 PF01113 Dihydrodipicolinate reductase, N-terminus AFAEC_RS01120 PF05173 Dihydrodipicolinate reductase, C-terminus AFAEC_RS01125 PF13537 Glutamine amidotransferase domain AFAEC_RS01125 PF00156 Phosphoribosyl transferase domain AFAEC_RS01130 PF04055 Radical SAM superfamily AFAEC_RS01130 PF16199 Radical_SAM C-terminal domain AFAEC_RS01135 PF03466 LysR substrate binding domain AFAEC_RS01135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFAEC_RS01140 PF13361 UvrD-like helicase C-terminal domain AFAEC_RS01140 PF00580 UvrD/REP helicase N-terminal domain AFAEC_RS01145 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFAEC_RS01150 PF00288 GHMP kinases N terminal domain AFAEC_RS01155 PF01668 SmpB protein AFAEC_RS01160 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFAEC_RS01205 PF00472 RF-1 domain AFAEC_RS01205 PF03462 PCRF domain AFAEC_RS01210 PF01132 Elongation factor P (EF-P) OB domain AFAEC_RS01210 PF08207 Elongation factor P (EF-P) KOW-like domain AFAEC_RS01210 PF09285 Elongation factor P, C-terminal AFAEC_RS01215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFAEC_RS01215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFAEC_RS01215 PF01842 ACT domain AFAEC_RS01220 PF00575 S1 RNA binding domain AFAEC_RS01225 PF02401 LytB protein AFAEC_RS01230 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFAEC_RS01235 PF03484 tRNA synthetase B5 domain AFAEC_RS01235 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AFAEC_RS01235 PF03147 Ferredoxin-fold anticodon binding domain AFAEC_RS01235 PF01588 Putative tRNA binding domain AFAEC_RS01240 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFAEC_RS01240 PF01409 tRNA synthetases class II core domain (F) AFAEC_RS01245 PF01230 HIT domain AFAEC_RS01250 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AFAEC_RS01255 PF00109 Beta-ketoacyl synthase, N-terminal domain AFAEC_RS01255 PF02801 Beta-ketoacyl synthase, C-terminal domain AFAEC_RS01260 PF00550 Phosphopantetheine attachment site AFAEC_RS01280 PF06508 Queuosine biosynthesis protein QueC AFAEC_RS01290 PF04452 RNA methyltransferase AFAEC_RS01305 PF00032 Cytochrome b(C-terminal)/b6/petD AFAEC_RS01305 PF00033 Cytochrome b/b6/petB AFAEC_RS01315 PF00291 Pyridoxal-phosphate dependent enzyme AFAEC_RS01320 PF00696 Amino acid kinase family AFAEC_RS01325 PF13361 UvrD-like helicase C-terminal domain AFAEC_RS01325 PF12705 PD-(D/E)XK nuclease superfamily AFAEC_RS01325 PF00580 UvrD/REP helicase N-terminal domain AFAEC_RS01330 PF02581 Thiamine monophosphate synthase AFAEC_RS01335 PF00119 ATP synthase A chain AFAEC_RS01340 PF00291 Pyridoxal-phosphate dependent enzyme AFAEC_RS01340 PF13291 ACT domain AFAEC_RS01350 PF12833 Helix-turn-helix domain AFAEC_RS01355 PF00155 Aminotransferase class I and II AFAEC_RS01365 PF09335 SNARE associated Golgi protein AFAEC_RS01370 PF01245 Ribosomal protein L19 AFAEC_RS01375 PF01746 tRNA (Guanine-1)-methyltransferase AFAEC_RS01385 PF01717 Cobalamin-independent synthase, Catalytic domain AFAEC_RS01385 PF08267 Cobalamin-independent synthase, N-terminal domain AFAEC_RS01390 PF01042 Endoribonuclease L-PSP AFAEC_RS01395 PF17674 HHH domain AFAEC_RS01395 PF00575 S1 RNA binding domain AFAEC_RS01395 PF09371 Tex-like protein N-terminal domain AFAEC_RS01395 PF16921 Tex protein YqgF-like domain AFAEC_RS01410 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFAEC_RS01410 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFAEC_RS01415 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS01415 PF03707 Bacterial signalling protein N terminal repeat AFAEC_RS01415 PF00563 EAL domain AFAEC_RS01435 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS01435 PF00593 TonB dependent receptor AFAEC_RS01445 PF08402 TOBE domain AFAEC_RS01445 PF00005 ABC transporter AFAEC_RS01450 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS01455 PF13416 Bacterial extracellular solute-binding protein AFAEC_RS01460 PF00117 Glutamine amidotransferase class-I AFAEC_RS01500 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFAEC_RS01505 PF03717 Penicillin-binding Protein dimerisation domain AFAEC_RS01505 PF00905 Penicillin binding protein transpeptidase domain AFAEC_RS01505 PF03793 PASTA domain AFAEC_RS01510 PF01098 Cell cycle protein AFAEC_RS01515 PF03033 Glycosyltransferase family 28 N-terminal domain AFAEC_RS01515 PF04101 Glycosyltransferase family 28 C-terminal domain AFAEC_RS01520 PF02673 Bacitracin resistance protein BacA AFAEC_RS01525 PF02621 Menaquinone biosynthesis AFAEC_RS01535 PF02391 MoaE protein AFAEC_RS01545 PF03951 Glutamine synthetase, beta-Grasp domain AFAEC_RS01545 PF00120 Glutamine synthetase, catalytic domain AFAEC_RS01550 PF17092 Penicillin-binding protein OB-like domain AFAEC_RS01550 PF00912 Transglycosylase AFAEC_RS01550 PF00905 Penicillin binding protein transpeptidase domain AFAEC_RS01555 PF00005 ABC transporter AFAEC_RS01555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFAEC_RS01560 PF01676 Metalloenzyme superfamily AFAEC_RS01560 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AFAEC_RS01565 PF00953 Glycosyl transferase family 4 AFAEC_RS01565 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFAEC_RS01570 PF08245 Mur ligase middle domain AFAEC_RS01595 PF03144 Elongation factor Tu domain 2 AFAEC_RS01595 PF03143 Elongation factor Tu C-terminal domain AFAEC_RS01595 PF00009 Elongation factor Tu GTP binding domain AFAEC_RS01600 PF00471 Ribosomal protein L33 AFAEC_RS01615 PF02357 Transcription termination factor nusG AFAEC_RS01620 PF00298 Ribosomal protein L11, RNA binding domain AFAEC_RS01620 PF03946 Ribosomal protein L11, N-terminal domain AFAEC_RS01625 PF00687 Ribosomal protein L1p/L10e family AFAEC_RS01630 PF00466 Ribosomal protein L10 AFAEC_RS01635 PF16320 Ribosomal protein L7/L12 dimerisation domain AFAEC_RS01635 PF00542 Ribosomal protein L7/L12 C-terminal domain AFAEC_RS01640 PF10385 RNA polymerase beta subunit external 1 domain AFAEC_RS01640 PF04565 RNA polymerase Rpb2, domain 3 AFAEC_RS01640 PF04561 RNA polymerase Rpb2, domain 2 AFAEC_RS01640 PF04563 RNA polymerase beta subunit AFAEC_RS01640 PF04560 RNA polymerase Rpb2, domain 7 AFAEC_RS01640 PF00562 RNA polymerase Rpb2, domain 6 AFAEC_RS01645 PF04983 RNA polymerase Rpb1, domain 3 AFAEC_RS01645 PF04998 RNA polymerase Rpb1, domain 5 AFAEC_RS01645 PF05000 RNA polymerase Rpb1, domain 4 AFAEC_RS01645 PF00623 RNA polymerase Rpb1, domain 2 AFAEC_RS01645 PF04997 RNA polymerase Rpb1, domain 1 AFAEC_RS01660 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS01665 PF00005 ABC transporter AFAEC_RS01680 PF00593 TonB dependent receptor AFAEC_RS01680 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS01690 PF00578 AhpC/TSA family AFAEC_RS01690 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFAEC_RS01695 PF07690 Major Facilitator Superfamily AFAEC_RS01705 PF00164 Ribosomal protein S12/S23 AFAEC_RS01710 PF00177 Ribosomal protein S7p/S5e AFAEC_RS01715 PF03764 Elongation factor G, domain IV AFAEC_RS01715 PF00009 Elongation factor Tu GTP binding domain AFAEC_RS01715 PF03144 Elongation factor Tu domain 2 AFAEC_RS01715 PF14492 Elongation Factor G, domain II AFAEC_RS01715 PF00679 Elongation factor G C-terminus AFAEC_RS01720 PF01513 ATP-NAD kinase AFAEC_RS01725 PF13476 AAA domain AFAEC_RS01730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS01730 PF17200 Single Cache domain 2 AFAEC_RS01730 PF00672 HAMP domain AFAEC_RS01735 PF01136 Peptidase family U32 AFAEC_RS01745 PF00731 AIR carboxylase AFAEC_RS01755 PF02091 Glycyl-tRNA synthetase alpha subunit AFAEC_RS01760 PF01784 NIF3 (NGG1p interacting factor 3) AFAEC_RS01770 PF02390 Putative methyltransferase AFAEC_RS01770 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AFAEC_RS01775 PF00849 RNA pseudouridylate synthase AFAEC_RS01780 PF00448 SRP54-type protein, GTPase domain AFAEC_RS01780 PF02978 Signal peptide binding domain AFAEC_RS01780 PF02881 SRP54-type protein, helical bundle domain AFAEC_RS01785 PF00886 Ribosomal protein S16 AFAEC_RS01795 PF01782 RimM N-terminal domain AFAEC_RS01810 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFAEC_RS01810 PF00460 Flagella basal body rod protein AFAEC_RS01815 PF00072 Response regulator receiver domain AFAEC_RS01825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFAEC_RS01825 PF00460 Flagella basal body rod protein AFAEC_RS01830 PF00460 Flagella basal body rod protein AFAEC_RS01835 PF01514 Secretory protein of YscJ/FliF family AFAEC_RS01835 PF08345 Flagellar M-ring protein C-terminal AFAEC_RS01840 PF14842 FliG N-terminal domain AFAEC_RS01840 PF14841 FliG middle domain AFAEC_RS01840 PF01706 FliG C-terminal domain AFAEC_RS01850 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFAEC_RS01860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFAEC_RS01860 PF00460 Flagella basal body rod protein AFAEC_RS01865 PF07196 Flagellin hook IN motif AFAEC_RS01865 PF00460 Flagella basal body rod protein AFAEC_RS01885 PF16973 Flagellar motor switch protein FliN N-terminal AFAEC_RS01885 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFAEC_RS01905 PF00448 SRP54-type protein, GTPase domain AFAEC_RS01910 PF10609 NUBPL iron-transfer P-loop NTPase AFAEC_RS01920 PF02049 Flagellar hook-basal body complex protein FliE AFAEC_RS01925 PF00460 Flagella basal body rod protein AFAEC_RS01925 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFAEC_RS01940 PF01312 FlhB HrpN YscU SpaS Family AFAEC_RS01950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFAEC_RS01950 PF18269 T3SS EscN ATPase C-terminal domain AFAEC_RS01955 PF00700 Bacterial flagellin C-terminal helical region AFAEC_RS01955 PF00669 Bacterial flagellin N-terminal helical region AFAEC_RS01960 PF00771 FHIPEP family AFAEC_RS01970 PF01613 Flavin reductase like domain AFAEC_RS01980 PF01741 Large-conductance mechanosensitive channel, MscL AFAEC_RS01985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS01985 PF00672 HAMP domain AFAEC_RS01985 PF02203 Tar ligand binding domain homologue AFAEC_RS02005 PF01575 MaoC like domain AFAEC_RS02010 PF00501 AMP-binding enzyme AFAEC_RS02010 PF13193 AMP-binding enzyme C-terminal domain AFAEC_RS02025 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFAEC_RS02030 PF10431 C-terminal, D2-small domain, of ClpB protein AFAEC_RS02030 PF02861 Clp amino terminal domain, pathogenicity island component AFAEC_RS02030 PF17871 AAA lid domain AFAEC_RS02030 PF07724 AAA domain (Cdc48 subfamily) AFAEC_RS02030 PF00004 ATPase family associated with various cellular activities (AAA) AFAEC_RS02080 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS02080 PF00593 TonB dependent receptor AFAEC_RS02085 PF12833 Helix-turn-helix domain AFAEC_RS02085 PF00072 Response regulator receiver domain AFAEC_RS02090 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS02090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS02090 PF00989 PAS fold AFAEC_RS02095 PF03631 Virulence factor BrkB AFAEC_RS02100 PF02913 FAD linked oxidases, C-terminal domain AFAEC_RS02100 PF01565 FAD binding domain AFAEC_RS02110 PF00578 AhpC/TSA family AFAEC_RS02115 PF13649 Methyltransferase domain AFAEC_RS02125 PF01728 FtsJ-like methyltransferase AFAEC_RS02125 PF01479 S4 domain AFAEC_RS02135 PF01205 Uncharacterized protein family UPF0029 AFAEC_RS02135 PF09186 Domain of unknown function (DUF1949) AFAEC_RS02140 PF00263 Bacterial type II and III secretion system protein AFAEC_RS02140 PF03958 Bacterial type II/III secretion system short domain AFAEC_RS02155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFAEC_RS02160 PF00892 EamA-like transporter family AFAEC_RS02165 PF00793 DAHP synthetase I family AFAEC_RS02170 PF09827 CRISPR associated protein Cas2 AFAEC_RS02180 PF18541 RuvC endonuclease subdomain 3 AFAEC_RS02180 PF13395 HNH endonuclease AFAEC_RS02185 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFAEC_RS02190 PF01029 NusB family AFAEC_RS02195 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFAEC_RS02255 PF00459 Inositol monophosphatase family AFAEC_RS02260 PF00037 4Fe-4S binding domain AFAEC_RS02285 PF01219 Prokaryotic diacylglycerol kinase AFAEC_RS02295 PF00483 Nucleotidyl transferase AFAEC_RS02300 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFAEC_RS02305 PF04321 RmlD substrate binding domain AFAEC_RS02310 PF16363 GDP-mannose 4,6 dehydratase AFAEC_RS02325 PF00535 Glycosyl transferase family 2 AFAEC_RS02335 PF03062 MBOAT, membrane-bound O-acyltransferase family AFAEC_RS02345 PF03062 MBOAT, membrane-bound O-acyltransferase family AFAEC_RS02360 PF00534 Glycosyl transferases group 1 AFAEC_RS02360 PF13439 Glycosyltransferase Family 4 AFAEC_RS02370 PF00535 Glycosyl transferase family 2 AFAEC_RS02385 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFAEC_RS02390 PF00884 Sulfatase AFAEC_RS02390 PF08019 Phosphoethanolamine transferase EptA/EptB AFAEC_RS02400 PF00884 Sulfatase AFAEC_RS02405 PF13580 SIS domain AFAEC_RS02410 PF01467 Cytidylyltransferase-like AFAEC_RS02410 PF00294 pfkB family carbohydrate kinase AFAEC_RS02415 PF01370 NAD dependent epimerase/dehydratase family AFAEC_RS02430 PF00830 Ribosomal L28 family AFAEC_RS02440 PF01960 ArgJ family AFAEC_RS02450 PF03989 DNA gyrase C-terminal domain, beta-propeller AFAEC_RS02450 PF00521 DNA gyrase/topoisomerase IV, subunit A AFAEC_RS02455 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFAEC_RS02455 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFAEC_RS02465 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFAEC_RS02500 PF12368 Rhodanase C-terminal AFAEC_RS02500 PF00581 Rhodanese-like domain AFAEC_RS02500 PF17773 UPF0176 acylphosphatase like domain AFAEC_RS02515 PF01209 ubiE/COQ5 methyltransferase family AFAEC_RS02520 PF02601 Exonuclease VII, large subunit AFAEC_RS02520 PF13742 OB-fold nucleic acid binding domain AFAEC_RS02525 PF01584 CheW-like domain AFAEC_RS02530 PF00072 Response regulator receiver domain AFAEC_RS02530 PF02954 Bacterial regulatory protein, Fis family AFAEC_RS02530 PF00158 Sigma-54 interaction domain AFAEC_RS02535 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFAEC_RS02540 PF02261 Aspartate decarboxylase AFAEC_RS02545 PF02575 YbaB/EbfC DNA-binding family AFAEC_RS02550 PF00348 Polyprenyl synthetase AFAEC_RS02555 PF00166 Chaperonin 10 Kd subunit AFAEC_RS02560 PF00118 TCP-1/cpn60 chaperonin family AFAEC_RS02570 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS02570 PF00072 Response regulator receiver domain AFAEC_RS02575 PF13493 Domain of unknown function (DUF4118) AFAEC_RS02575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS02575 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS02575 PF02702 Osmosensitive K+ channel His kinase sensor domain AFAEC_RS02580 PF00459 Inositol monophosphatase family AFAEC_RS02585 PF01380 SIS domain AFAEC_RS02590 PF02772 S-adenosylmethionine synthetase, central domain AFAEC_RS02590 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFAEC_RS02590 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFAEC_RS02595 PF17848 Acetyl-coA carboxylase zinc finger domain AFAEC_RS02595 PF01039 Carboxyl transferase domain AFAEC_RS02600 PF02581 Thiamine monophosphate synthase AFAEC_RS02605 PF02590 Predicted SPOUT methyltransferase AFAEC_RS02615 PF01207 Dihydrouridine synthase (Dus) AFAEC_RS02625 PF00004 ATPase family associated with various cellular activities (AAA) AFAEC_RS02625 PF17862 AAA+ lid domain AFAEC_RS02625 PF01434 Peptidase family M41 AFAEC_RS02630 PF05736 OprF membrane domain AFAEC_RS02630 PF00691 OmpA family AFAEC_RS02640 PF01594 AI-2E family transporter AFAEC_RS02645 PF05491 RuvB C-terminal winged helix domain AFAEC_RS02645 PF17864 RuvB AAA lid domain AFAEC_RS02645 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFAEC_RS02650 PF02548 Ketopantoate hydroxymethyltransferase AFAEC_RS02655 PF00290 Tryptophan synthase alpha chain AFAEC_RS02660 PF04377 Arginine-tRNA-protein transferase, C terminus AFAEC_RS02660 PF04376 Arginine-tRNA-protein transferase, N terminus AFAEC_RS02670 PF07664 Ferrous iron transport protein B C terminus AFAEC_RS02670 PF07670 Nucleoside recognition AFAEC_RS02670 PF02421 Ferrous iron transport protein B AFAEC_RS02680 PF01475 Ferric uptake regulator family AFAEC_RS02685 PF00258 Flavodoxin AFAEC_RS02710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFAEC_RS02715 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS02715 PF00072 Response regulator receiver domain AFAEC_RS02720 PF00989 PAS fold AFAEC_RS02720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS02720 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS02720 PF08447 PAS fold AFAEC_RS02725 PF13746 4Fe-4S dicluster domain AFAEC_RS02725 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AFAEC_RS02725 PF12801 4Fe-4S binding domain AFAEC_RS02750 PF01551 Peptidase family M23 AFAEC_RS02760 PF05638 Type VI secretion system effector, Hcp AFAEC_RS02795 PF17762 HTH domain found in ParB protein AFAEC_RS02795 PF02195 ParB-like nuclease domain AFAEC_RS02800 PF00145 C-5 cytosine-specific DNA methylase AFAEC_RS02820 PF01381 Helix-turn-helix AFAEC_RS02865 PF00772 DnaB-like helicase N terminal domain AFAEC_RS02865 PF03796 DnaB-like helicase C terminal domain AFAEC_RS03030 PF10145 Phage-related minor tail protein AFAEC_RS03030 PF01464 Transglycosylase SLT domain AFAEC_RS03030 PF01551 Peptidase family M23 AFAEC_RS03035 PF13356 Arm DNA-binding domain AFAEC_RS03035 PF00589 Phage integrase family AFAEC_RS03045 PF03435 Saccharopine dehydrogenase NADP binding domain AFAEC_RS03045 PF16653 Saccharopine dehydrogenase C-terminal domain AFAEC_RS03050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFAEC_RS03055 PF03976 Polyphosphate kinase 2 (PPK2) AFAEC_RS03060 PF03976 Polyphosphate kinase 2 (PPK2) AFAEC_RS03065 PF05698 Bacterial trigger factor protein (TF) C-terminus AFAEC_RS03065 PF05697 Bacterial trigger factor protein (TF) AFAEC_RS03065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFAEC_RS03070 PF00574 Clp protease AFAEC_RS03075 PF01327 Polypeptide deformylase AFAEC_RS03085 PF13335 Magnesium chelatase, subunit ChlI C-terminal AFAEC_RS03085 PF01078 Magnesium chelatase, subunit ChlI AFAEC_RS03090 PF08502 LeuA allosteric (dimerisation) domain AFAEC_RS03090 PF00682 HMGL-like AFAEC_RS03105 PF00488 MutS domain V AFAEC_RS03105 PF05190 MutS family domain IV AFAEC_RS03105 PF05192 MutS domain III AFAEC_RS03105 PF01624 MutS domain I AFAEC_RS03105 PF05188 MutS domain II AFAEC_RS03115 PF01914 MarC family integral membrane protein AFAEC_RS03120 PF07694 5TMR of 5TMR-LYT AFAEC_RS03120 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS03125 PF00977 Histidine biosynthesis protein AFAEC_RS03130 PF00117 Glutamine amidotransferase class-I AFAEC_RS03145 PF00156 Phosphoribosyl transferase domain AFAEC_RS03150 PF03144 Elongation factor Tu domain 2 AFAEC_RS03150 PF00009 Elongation factor Tu GTP binding domain AFAEC_RS03150 PF00679 Elongation factor G C-terminus AFAEC_RS03150 PF06421 GTP-binding protein LepA C-terminus AFAEC_RS03155 PF00691 OmpA family AFAEC_RS03155 PF05736 OprF membrane domain AFAEC_RS03160 PF05736 OprF membrane domain AFAEC_RS03160 PF00691 OmpA family AFAEC_RS03165 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFAEC_RS03165 PF14572 Phosphoribosyl synthetase-associated domain AFAEC_RS03185 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFAEC_RS03190 PF00557 Metallopeptidase family M24 AFAEC_RS03190 PF01321 Creatinase/Prolidase N-terminal domain AFAEC_RS03195 PF01220 Dehydroquinase class II AFAEC_RS03200 PF01979 Amidohydrolase family AFAEC_RS03205 PF01343 Peptidase family S49 AFAEC_RS03210 PF00871 Acetokinase family AFAEC_RS03215 PF01515 Phosphate acetyl/butaryl transferase AFAEC_RS03220 PF00871 Acetokinase family AFAEC_RS03225 PF00929 Exonuclease AFAEC_RS03225 PF02811 PHP domain AFAEC_RS03225 PF14579 Helix-hairpin-helix motif AFAEC_RS03225 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFAEC_RS03225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFAEC_RS03235 PF00474 Sodium:solute symporter family AFAEC_RS03245 PF00474 Sodium:solute symporter family AFAEC_RS03255 PF11490 DNA polymerase III polC-type N-terminus II AFAEC_RS03255 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFAEC_RS03255 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFAEC_RS03255 PF02811 PHP domain AFAEC_RS03255 PF14579 Helix-hairpin-helix motif AFAEC_RS03255 PF00929 Exonuclease AFAEC_RS03265 PF00474 Sodium:solute symporter family AFAEC_RS03275 PF00072 Response regulator receiver domain AFAEC_RS03275 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS03280 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS03280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS03325 PF18146 Damage-inducible protein CinA KH domain AFAEC_RS03325 PF00994 Probable molybdopterin binding domain AFAEC_RS03325 PF02464 Competence-damaged protein AFAEC_RS03330 PF06039 Malate:quinone oxidoreductase (Mqo) AFAEC_RS03335 PF08264 Anticodon-binding domain of tRNA AFAEC_RS03335 PF00133 tRNA synthetases class I (I, L, M and V) AFAEC_RS03350 PF02875 Mur ligase family, glutamate ligase domain AFAEC_RS03350 PF08245 Mur ligase middle domain AFAEC_RS03355 PF00318 Ribosomal protein S2 AFAEC_RS03360 PF00889 Elongation factor TS AFAEC_RS03365 PF00005 ABC transporter AFAEC_RS03375 PF00625 Guanylate kinase AFAEC_RS03380 PF00563 EAL domain AFAEC_RS03380 PF08448 PAS fold AFAEC_RS03380 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS03385 PF00403 Heavy-metal-associated domain AFAEC_RS03400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFAEC_RS03400 PF00005 ABC transporter AFAEC_RS03405 PF00762 Ferrochelatase AFAEC_RS03410 PF01368 DHH family AFAEC_RS03410 PF02833 DHHA2 domain AFAEC_RS03415 PF00924 Mechanosensitive ion channel AFAEC_RS03420 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AFAEC_RS03420 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AFAEC_RS03430 PF12833 Helix-turn-helix domain AFAEC_RS03435 PF00682 HMGL-like AFAEC_RS03435 PF08502 LeuA allosteric (dimerisation) domain AFAEC_RS03460 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS03460 PF00593 TonB dependent receptor AFAEC_RS03470 PF00491 Arginase family AFAEC_RS03495 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS03495 PF00593 TonB dependent receptor AFAEC_RS03515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFAEC_RS03520 PF12704 MacB-like periplasmic core domain AFAEC_RS03520 PF00005 ABC transporter AFAEC_RS03520 PF02687 FtsX-like permease family AFAEC_RS03525 PF02321 Outer membrane efflux protein AFAEC_RS03535 PF00313 'Cold-shock' DNA-binding domain AFAEC_RS03540 PF08713 DNA alkylation repair enzyme AFAEC_RS03545 PF04073 Aminoacyl-tRNA editing domain AFAEC_RS03575 PF04403 Paraquat-inducible protein A AFAEC_RS03585 PF00199 Catalase AFAEC_RS03585 PF06628 Catalase-related immune-responsive AFAEC_RS03590 PF12796 Ankyrin repeats (3 copies) AFAEC_RS03590 PF00023 Ankyrin repeat AFAEC_RS03595 PF04076 Bacterial OB fold (BOF) protein AFAEC_RS03600 PF08521 Two-component sensor kinase N-terminal AFAEC_RS03600 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS03600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS03605 PF00072 Response regulator receiver domain AFAEC_RS03605 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS03615 PF08808 RES domain AFAEC_RS03645 PF00183 Hsp90 protein AFAEC_RS03655 PF01964 Radical SAM ThiC family AFAEC_RS03660 PF17284 Spermidine synthase tetramerisation domain AFAEC_RS03665 PF08447 PAS fold AFAEC_RS03665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS03670 PF02203 Tar ligand binding domain homologue AFAEC_RS03670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS03670 PF00672 HAMP domain AFAEC_RS03675 PF00563 EAL domain AFAEC_RS03680 PF08447 PAS fold AFAEC_RS03680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS03690 PF03880 DbpA RNA binding domain AFAEC_RS03690 PF00271 Helicase conserved C-terminal domain AFAEC_RS03690 PF00270 DEAD/DEAH box helicase AFAEC_RS03695 PF00563 EAL domain AFAEC_RS03695 PF03707 Bacterial signalling protein N terminal repeat AFAEC_RS03695 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS03700 PF01243 Pyridoxamine 5'-phosphate oxidase AFAEC_RS03700 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AFAEC_RS03710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS03710 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS03715 PF00005 ABC transporter AFAEC_RS03720 PF00950 ABC 3 transport family AFAEC_RS03725 PF17783 CvfB-like winged helix domain AFAEC_RS03725 PF13509 S1 domain AFAEC_RS03730 PF08534 Redoxin AFAEC_RS03740 PF00206 Lyase AFAEC_RS03740 PF10415 Fumarase C C-terminus AFAEC_RS03755 PF13361 UvrD-like helicase C-terminal domain AFAEC_RS03755 PF00580 UvrD/REP helicase N-terminal domain AFAEC_RS03760 PF02080 TrkA-C domain AFAEC_RS03760 PF00999 Sodium/hydrogen exchanger family AFAEC_RS03760 PF02254 TrkA-N domain AFAEC_RS03765 PF00174 Oxidoreductase molybdopterin binding domain AFAEC_RS03775 PF00034 Cytochrome c AFAEC_RS03880 PF09106 Elongation factor SelB, winged helix AFAEC_RS03880 PF09107 Elongation factor SelB, winged helix AFAEC_RS03880 PF03144 Elongation factor Tu domain 2 AFAEC_RS03880 PF00009 Elongation factor Tu GTP binding domain AFAEC_RS03880 PF09105 Elongation factor SelB, winged helix AFAEC_RS03885 PF03841 L-seryl-tRNA selenium transferase AFAEC_RS03915 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS03915 PF00593 TonB dependent receptor AFAEC_RS03925 PF00586 AIR synthase related protein, N-terminal domain AFAEC_RS03925 PF02769 AIR synthase related protein, C-terminal domain AFAEC_RS03930 PF01841 Transglutaminase-like superfamily AFAEC_RS03945 PF00593 TonB dependent receptor AFAEC_RS03945 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS03960 PF00440 Bacterial regulatory proteins, tetR family AFAEC_RS03960 PF08359 YsiA-like protein, C-terminal region AFAEC_RS03965 PF00072 Response regulator receiver domain AFAEC_RS03970 PF00989 PAS fold AFAEC_RS03970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS03970 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS03995 PF01568 Molydopterin dinucleotide binding domain AFAEC_RS03995 PF00384 Molybdopterin oxidoreductase AFAEC_RS04000 PF00384 Molybdopterin oxidoreductase AFAEC_RS04000 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFAEC_RS04000 PF01568 Molydopterin dinucleotide binding domain AFAEC_RS04005 PF13247 4Fe-4S dicluster domain AFAEC_RS04015 PF02634 FdhD/NarQ family AFAEC_RS04020 PF00266 Aminotransferase class-V AFAEC_RS04025 PF00994 Probable molybdopterin binding domain AFAEC_RS04025 PF03453 MoeA N-terminal region (domain I and II) AFAEC_RS04025 PF03454 MoeA C-terminal region (domain IV) AFAEC_RS04030 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding AFAEC_RS04030 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFAEC_RS04030 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFAEC_RS04040 PF11799 impB/mucB/samB family C-terminal domain AFAEC_RS04040 PF00817 impB/mucB/samB family AFAEC_RS04045 PF01384 Phosphate transporter family AFAEC_RS04055 PF00682 HMGL-like AFAEC_RS04060 PF00075 RNase H AFAEC_RS04065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS04065 PF00672 HAMP domain AFAEC_RS04065 PF02203 Tar ligand binding domain homologue AFAEC_RS04080 PF01022 Bacterial regulatory protein, arsR family AFAEC_RS04085 PF00403 Heavy-metal-associated domain AFAEC_RS04090 PF01263 Aldose 1-epimerase AFAEC_RS04095 PF12161 HsdM N-terminal domain AFAEC_RS04095 PF02384 N-6 DNA Methylase AFAEC_RS04100 PF00270 DEAD/DEAH box helicase AFAEC_RS04100 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AFAEC_RS04100 PF17191 RecG wedge domain AFAEC_RS04115 PF18766 SWI2/SNF2 ATPase AFAEC_RS04115 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AFAEC_RS04115 PF12008 Type I restriction and modification enzyme - subunit R C terminal AFAEC_RS04120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFAEC_RS04120 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFAEC_RS04125 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFAEC_RS04125 PF02817 e3 binding domain AFAEC_RS04125 PF00364 Biotin-requiring enzyme AFAEC_RS04130 PF17831 Pyruvate dehydrogenase E1 component middle domain AFAEC_RS04130 PF00456 Transketolase, thiamine diphosphate binding domain AFAEC_RS04135 PF03099 Biotin/lipoate A/B protein ligase family AFAEC_RS04140 PF04055 Radical SAM superfamily AFAEC_RS04150 PF00890 FAD binding domain AFAEC_RS04150 PF02910 Fumarate reductase flavoprotein C-term AFAEC_RS04155 PF00958 GMP synthase C terminal domain AFAEC_RS04155 PF02540 NAD synthase AFAEC_RS04155 PF00117 Glutamine amidotransferase class-I AFAEC_RS04165 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AFAEC_RS04180 PF00561 alpha/beta hydrolase fold AFAEC_RS04195 PF03062 MBOAT, membrane-bound O-acyltransferase family AFAEC_RS04200 PF01170 Putative RNA methylase family UPF0020 AFAEC_RS04200 PF10672 S-adenosylmethionine-dependent methyltransferase AFAEC_RS04200 PF02926 THUMP domain AFAEC_RS04210 PF03734 L,D-transpeptidase catalytic domain AFAEC_RS04210 PF01471 Putative peptidoglycan binding domain AFAEC_RS04225 PF03471 Transporter associated domain AFAEC_RS04225 PF00571 CBS domain AFAEC_RS04230 PF01594 AI-2E family transporter AFAEC_RS04245 PF04717 Type VI secretion system, phage-baseplate injector AFAEC_RS04260 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS04260 PF08448 PAS fold AFAEC_RS04265 PF01966 HD domain AFAEC_RS04270 PF00005 ABC transporter AFAEC_RS04270 PF17760 UvrA interaction domain AFAEC_RS04270 PF17755 UvrA DNA-binding domain AFAEC_RS04290 PF02926 THUMP domain AFAEC_RS04290 PF02568 Thiamine biosynthesis protein (ThiI) AFAEC_RS04305 PF12823 Domain of unknown function (DUF3817) AFAEC_RS04325 PF05661 Protein of unknown function (DUF808) AFAEC_RS04330 PF01522 Polysaccharide deacetylase AFAEC_RS04360 PF00270 DEAD/DEAH box helicase AFAEC_RS04360 PF00271 Helicase conserved C-terminal domain AFAEC_RS04360 PF17764 3′ DNA-binding domain (3′BD) AFAEC_RS04360 PF18074 Primosomal protein N C-terminal domain AFAEC_RS04360 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AFAEC_RS04365 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AFAEC_RS04365 PF14602 Hexapeptide repeat of succinyl-transferase AFAEC_RS04380 PF00005 ABC transporter AFAEC_RS04380 PF16326 ABC transporter C-terminal domain AFAEC_RS04380 PF12848 ABC transporter AFAEC_RS04385 PF03594 Benzoate membrane transport protein AFAEC_RS04390 PF03473 MOSC domain AFAEC_RS04390 PF03475 3-alpha domain AFAEC_RS04395 PF00202 Aminotransferase class-III AFAEC_RS04405 PF00857 Isochorismatase family AFAEC_RS04415 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AFAEC_RS04415 PF18381 YcaO cyclodehydratase C-terminal domain AFAEC_RS04420 PF12792 CSS motif domain associated with EAL AFAEC_RS04420 PF00563 EAL domain AFAEC_RS04430 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFAEC_RS04430 PF12833 Helix-turn-helix domain AFAEC_RS04430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFAEC_RS04430 PF02805 Metal binding domain of Ada AFAEC_RS04435 PF00464 Serine hydroxymethyltransferase AFAEC_RS04445 PF02254 TrkA-N domain AFAEC_RS04445 PF02080 TrkA-C domain AFAEC_RS04445 PF00999 Sodium/hydrogen exchanger family AFAEC_RS04450 PF00072 Response regulator receiver domain AFAEC_RS04450 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS04465 PF08245 Mur ligase middle domain AFAEC_RS04465 PF08443 RimK-like ATP-grasp domain AFAEC_RS04465 PF02875 Mur ligase family, glutamate ligase domain AFAEC_RS04490 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS04490 PF00593 TonB dependent receptor AFAEC_RS04510 PF02600 Disulfide bond formation protein DsbB AFAEC_RS04525 PF08534 Redoxin AFAEC_RS04530 PF13473 Cupredoxin-like domain AFAEC_RS04530 PF18764 Nitrous oxide reductase propeller repeat AFAEC_RS04530 PF18793 Nitrous oxide reductase propeller repeat 2 AFAEC_RS04545 PF12800 4Fe-4S binding domain AFAEC_RS04545 PF12838 4Fe-4S dicluster domain AFAEC_RS04560 PF00037 4Fe-4S binding domain AFAEC_RS04560 PF12801 4Fe-4S binding domain AFAEC_RS04565 PF00005 ABC transporter AFAEC_RS04585 PF13419 Haloacid dehalogenase-like hydrolase AFAEC_RS04590 PF03641 Possible lysine decarboxylase AFAEC_RS04605 PF04333 MlaA lipoprotein AFAEC_RS04610 PF01709 Transcriptional regulator AFAEC_RS04630 PF00563 EAL domain AFAEC_RS04630 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS04630 PF03707 Bacterial signalling protein N terminal repeat AFAEC_RS04640 PF11791 Aconitate B N-terminal domain AFAEC_RS04640 PF00330 Aconitase family (aconitate hydratase) AFAEC_RS04640 PF06434 Aconitate hydratase 2 N-terminus AFAEC_RS04645 PF16916 Dimerisation domain of Zinc Transporter AFAEC_RS04645 PF01545 Cation efflux family AFAEC_RS04650 PF00155 Aminotransferase class I and II AFAEC_RS04655 PF01863 Protein of unknown function DUF45 AFAEC_RS04675 PF00005 ABC transporter AFAEC_RS04680 PF02390 Putative methyltransferase AFAEC_RS04685 PF02903 Alpha amylase, N-terminal ig-like domain AFAEC_RS04685 PF00128 Alpha amylase, catalytic domain AFAEC_RS04690 PF01479 S4 domain AFAEC_RS04690 PF00849 RNA pseudouridylate synthase AFAEC_RS04695 PF01098 Cell cycle protein AFAEC_RS04700 PF03544 Gram-negative bacterial TonB protein C-terminal AFAEC_RS04705 PF00202 Aminotransferase class-III AFAEC_RS04710 PF06865 Pyrimidine/purine nucleoside phosphorylase AFAEC_RS04725 PF01370 NAD dependent epimerase/dehydratase family AFAEC_RS04725 PF08338 Domain of unknown function (DUF1731) AFAEC_RS04735 PF03441 FAD binding domain of DNA photolyase AFAEC_RS04735 PF00875 DNA photolyase AFAEC_RS04740 PF13492 GAF domain AFAEC_RS04740 PF07694 5TMR of 5TMR-LYT AFAEC_RS04740 PF06580 Histidine kinase AFAEC_RS04740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS04745 PF04397 LytTr DNA-binding domain AFAEC_RS04745 PF00072 Response regulator receiver domain AFAEC_RS04755 PF03109 ABC1 family AFAEC_RS04760 PF00011 Hsp20/alpha crystallin family AFAEC_RS04765 PF08212 Lipocalin-like domain AFAEC_RS04770 PF00005 ABC transporter AFAEC_RS04770 PF00664 ABC transporter transmembrane region AFAEC_RS04780 PF00072 Response regulator receiver domain AFAEC_RS04780 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS04785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS04810 PF12704 MacB-like periplasmic core domain AFAEC_RS04810 PF02687 FtsX-like permease family AFAEC_RS04815 PF07517 SecA DEAD-like domain AFAEC_RS04815 PF00271 Helicase conserved C-terminal domain AFAEC_RS04815 PF02810 SEC-C motif AFAEC_RS04815 PF07516 SecA Wing and Scaffold domain AFAEC_RS04815 PF01043 SecA preprotein cross-linking domain AFAEC_RS04820 PF03548 Outer membrane lipoprotein carrier protein LolA AFAEC_RS04830 PF13419 Haloacid dehalogenase-like hydrolase AFAEC_RS04850 PF00593 TonB dependent receptor AFAEC_RS04850 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS04855 PF01497 Periplasmic binding protein AFAEC_RS04860 PF00005 ABC transporter AFAEC_RS04865 PF01032 FecCD transport family AFAEC_RS04875 PF00271 Helicase conserved C-terminal domain AFAEC_RS04875 PF00270 DEAD/DEAH box helicase AFAEC_RS04880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS04880 PF08447 PAS fold AFAEC_RS04880 PF08448 PAS fold AFAEC_RS04885 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS04885 PF00072 Response regulator receiver domain AFAEC_RS04920 PF00156 Phosphoribosyl transferase domain AFAEC_RS04925 PF04241 Protein of unknown function (DUF423) AFAEC_RS04930 PF04461 Protein of unknown function (DUF520) AFAEC_RS04935 PF00072 Response regulator receiver domain AFAEC_RS04935 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS04940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS04945 PF00293 NUDIX domain AFAEC_RS04955 PF02253 Phospholipase A1 AFAEC_RS04960 PF00834 Ribulose-phosphate 3 epimerase family AFAEC_RS04965 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AFAEC_RS04970 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFAEC_RS04970 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFAEC_RS04970 PF11490 DNA polymerase III polC-type N-terminus II AFAEC_RS04970 PF14579 Helix-hairpin-helix motif AFAEC_RS04970 PF00929 Exonuclease AFAEC_RS04970 PF02811 PHP domain AFAEC_RS04970 PF14480 DNA polymerase III polC-type N-terminus I AFAEC_RS04990 PF00248 Aldo/keto reductase family AFAEC_RS05000 PF00672 HAMP domain AFAEC_RS05000 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS05000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS05020 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS05020 PF00072 Response regulator receiver domain AFAEC_RS05030 PF04539 Sigma-70 region 3 AFAEC_RS05030 PF04545 Sigma-70, region 4 AFAEC_RS05030 PF00140 Sigma-70 factor, region 1.2 AFAEC_RS05030 PF04542 Sigma-70 region 2 AFAEC_RS05035 PF00694 Aconitase C-terminal domain AFAEC_RS05040 PF00180 Isocitrate/isopropylmalate dehydrogenase AFAEC_RS05055 PF00444 Ribosomal protein L36 AFAEC_RS05060 PF00416 Ribosomal protein S13/S18 AFAEC_RS05065 PF00411 Ribosomal protein S11 AFAEC_RS05070 PF00163 Ribosomal protein S4/S9 N-terminal domain AFAEC_RS05070 PF01479 S4 domain AFAEC_RS05075 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFAEC_RS05075 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFAEC_RS05075 PF01000 RNA polymerase Rpb3/RpoA insert domain AFAEC_RS05080 PF01196 Ribosomal protein L17 AFAEC_RS05085 PF01425 Amidase AFAEC_RS05090 PF00478 IMP dehydrogenase / GMP reductase domain AFAEC_RS05090 PF00571 CBS domain AFAEC_RS05095 PF02203 Tar ligand binding domain homologue AFAEC_RS05095 PF00672 HAMP domain AFAEC_RS05095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS05100 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain AFAEC_RS05100 PF01113 Dihydrodipicolinate reductase, N-terminus AFAEC_RS05105 PF08448 PAS fold AFAEC_RS05105 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS05110 PF08501 Shikimate dehydrogenase substrate binding domain AFAEC_RS05120 PF02578 Multi-copper polyphenol oxidoreductase laccase AFAEC_RS05125 PF00551 Formyl transferase AFAEC_RS05125 PF01842 ACT domain AFAEC_RS05130 PF00588 SpoU rRNA Methylase family AFAEC_RS05145 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS05145 PF00072 Response regulator receiver domain AFAEC_RS05160 PF04717 Type VI secretion system, phage-baseplate injector AFAEC_RS05180 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AFAEC_RS05185 PF00849 RNA pseudouridylate synthase AFAEC_RS05185 PF01479 S4 domain AFAEC_RS05190 PF03960 ArsC family AFAEC_RS05200 PF14490 Helix-hairpin-helix containing domain AFAEC_RS05200 PF13538 UvrD-like helicase C-terminal domain AFAEC_RS05200 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AFAEC_RS05210 PF02491 SHS2 domain inserted in FTSA AFAEC_RS05215 PF00091 Tubulin/FtsZ family, GTPase domain AFAEC_RS05215 PF12327 FtsZ family, C-terminal domain AFAEC_RS05220 PF04143 Sulphur transport AFAEC_RS05230 PF00561 alpha/beta hydrolase fold AFAEC_RS05235 PF02609 Exonuclease VII small subunit AFAEC_RS05240 PF00899 ThiF family AFAEC_RS05250 PF02142 MGS-like domain AFAEC_RS05250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFAEC_RS05250 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFAEC_RS05265 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS05265 PF00072 Response regulator receiver domain AFAEC_RS05270 PF01761 3-dehydroquinate synthase AFAEC_RS05280 PF04055 Radical SAM superfamily AFAEC_RS05280 PF00919 Uncharacterized protein family UPF0004 AFAEC_RS05285 PF00004 ATPase family associated with various cellular activities (AAA) AFAEC_RS05285 PF06480 FtsH Extracellular AFAEC_RS05285 PF01434 Peptidase family M41 AFAEC_RS05285 PF17862 AAA+ lid domain AFAEC_RS05295 PF00994 Probable molybdopterin binding domain AFAEC_RS05300 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFAEC_RS05315 PF13673 Acetyltransferase (GNAT) domain AFAEC_RS05330 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS05330 PF00593 TonB dependent receptor AFAEC_RS05340 PF07503 HypF finger AFAEC_RS05340 PF01300 Telomere recombination AFAEC_RS05340 PF17788 HypF Kae1-like domain AFAEC_RS05340 PF00708 Acylphosphatase AFAEC_RS05355 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFAEC_RS05360 PF01455 HupF/HypC family AFAEC_RS05365 PF01924 Hydrogenase formation hypA family AFAEC_RS05375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFAEC_RS05375 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFAEC_RS05385 PF00586 AIR synthase related protein, N-terminal domain AFAEC_RS05385 PF02769 AIR synthase related protein, C-terminal domain AFAEC_RS05390 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AFAEC_RS05400 PF01891 Cobalt uptake substrate-specific transmembrane region AFAEC_RS05400 PF13190 PDGLE domain AFAEC_RS05415 PF00005 ABC transporter AFAEC_RS05420 PF00132 Bacterial transferase hexapeptide (six repeats) AFAEC_RS05425 PF00550 Phosphopantetheine attachment site AFAEC_RS05435 PF03062 MBOAT, membrane-bound O-acyltransferase family AFAEC_RS05440 PF13193 AMP-binding enzyme C-terminal domain AFAEC_RS05440 PF00501 AMP-binding enzyme AFAEC_RS05445 PF00764 Arginosuccinate synthase AFAEC_RS05455 PF00591 Glycosyl transferase family, a/b domain AFAEC_RS05455 PF02885 Glycosyl transferase family, helical bundle domain AFAEC_RS05465 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFAEC_RS05465 PF00005 ABC transporter AFAEC_RS05470 PF00925 GTP cyclohydrolase II AFAEC_RS05470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFAEC_RS05665 PF18644 Phage integrase SAM-like domain AFAEC_RS05665 PF00589 Phage integrase family AFAEC_RS05680 PF01432 Peptidase family M3 AFAEC_RS05685 PF05175 Methyltransferase small domain AFAEC_RS05685 PF17827 PrmC N-terminal domain AFAEC_RS05690 PF04055 Radical SAM superfamily AFAEC_RS05690 PF06969 HemN C-terminal domain AFAEC_RS05695 PF00293 NUDIX domain AFAEC_RS05700 PF13840 ACT domain AFAEC_RS05700 PF01842 ACT domain AFAEC_RS05700 PF00696 Amino acid kinase family AFAEC_RS05715 PF00809 Pterin binding enzyme AFAEC_RS05720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFAEC_RS05720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFAEC_RS05720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFAEC_RS05720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFAEC_RS05725 PF00483 Nucleotidyl transferase AFAEC_RS05730 PF00342 Phosphoglucose isomerase AFAEC_RS05750 PF03372 Endonuclease/Exonuclease/phosphatase family AFAEC_RS05760 PF08003 Protein of unknown function (DUF1698) AFAEC_RS05765 PF01578 Cytochrome C assembly protein AFAEC_RS05765 PF05140 ResB-like family AFAEC_RS05770 PF07687 Peptidase dimerisation domain AFAEC_RS05770 PF01546 Peptidase family M20/M25/M40 AFAEC_RS05775 PF00563 EAL domain AFAEC_RS05775 PF08495 FIST N domain AFAEC_RS05775 PF10442 FIST C domain AFAEC_RS05775 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS05790 PF00571 CBS domain AFAEC_RS05790 PF03471 Transporter associated domain AFAEC_RS05790 PF01595 Cyclin M transmembrane N-terminal domain AFAEC_RS05795 PF00488 MutS domain V AFAEC_RS05795 PF01713 Smr domain AFAEC_RS05800 PF02525 Flavodoxin-like fold AFAEC_RS05805 PF01638 HxlR-like helix-turn-helix AFAEC_RS05830 PF01750 Hydrogenase maturation protease AFAEC_RS05835 PF01292 Prokaryotic cytochrome b561 AFAEC_RS05840 PF00374 Nickel-dependent hydrogenase AFAEC_RS05845 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AFAEC_RS05845 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFAEC_RS05845 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFAEC_RS05855 PF08447 PAS fold AFAEC_RS05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS05855 PF08448 PAS fold AFAEC_RS05865 PF02132 RecR protein AFAEC_RS05865 PF13662 Toprim domain AFAEC_RS05870 PF00684 DnaJ central domain AFAEC_RS05870 PF00226 DnaJ domain AFAEC_RS05870 PF01556 DnaJ C terminal domain AFAEC_RS05890 PF00753 Metallo-beta-lactamase superfamily AFAEC_RS05895 PF08448 PAS fold AFAEC_RS05895 PF08447 PAS fold AFAEC_RS05895 PF00563 EAL domain AFAEC_RS05895 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS05900 PF00563 EAL domain AFAEC_RS05900 PF01590 GAF domain AFAEC_RS05900 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS05900 PF00360 Phytochrome region AFAEC_RS05905 PF01842 ACT domain AFAEC_RS05905 PF02153 Prephenate dehydrogenase AFAEC_RS05910 PF07244 Surface antigen variable number repeat AFAEC_RS05910 PF01103 Surface antigen AFAEC_RS05915 PF04055 Radical SAM superfamily AFAEC_RS05920 PF05193 Peptidase M16 inactive domain AFAEC_RS05925 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFAEC_RS05950 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AFAEC_RS05960 PF01588 Putative tRNA binding domain AFAEC_RS05960 PF09334 tRNA synthetases class I (M) AFAEC_RS05960 PF00133 tRNA synthetases class I (I, L, M and V) AFAEC_RS05975 PF01293 Phosphoenolpyruvate carboxykinase AFAEC_RS05980 PF01339 CheB methylesterase AFAEC_RS05980 PF00072 Response regulator receiver domain AFAEC_RS05985 PF03975 CheD chemotactic sensory transduction AFAEC_RS05990 PF03705 CheR methyltransferase, all-alpha domain AFAEC_RS05990 PF01739 CheR methyltransferase, SAM binding domain AFAEC_RS05995 PF02895 Signal transducing histidine kinase, homodimeric domain AFAEC_RS05995 PF01627 Hpt domain AFAEC_RS05995 PF01584 CheW-like domain AFAEC_RS05995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS05995 PF09078 CheY binding AFAEC_RS06000 PF00072 Response regulator receiver domain AFAEC_RS06005 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFAEC_RS06005 PF00013 KH domain AFAEC_RS06005 PF01138 3' exoribonuclease family, domain 1 AFAEC_RS06005 PF03725 3' exoribonuclease family, domain 2 AFAEC_RS06005 PF00575 S1 RNA binding domain AFAEC_RS06015 PF03968 OstA-like protein AFAEC_RS06015 PF04453 LPS transport system D AFAEC_RS06025 PF02844 Phosphoribosylglycinamide synthetase, N domain AFAEC_RS06025 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFAEC_RS06025 PF02843 Phosphoribosylglycinamide synthetase, C domain AFAEC_RS06035 PF01740 STAS domain AFAEC_RS06035 PF00916 Sulfate permease family AFAEC_RS06040 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFAEC_RS06040 PF01926 50S ribosome-binding GTPase AFAEC_RS06045 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AFAEC_RS06045 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFAEC_RS06055 PF02618 YceG-like family AFAEC_RS06060 PF03971 Monomeric isocitrate dehydrogenase AFAEC_RS06085 PF01266 FAD dependent oxidoreductase AFAEC_RS06085 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AFAEC_RS06090 PF00072 Response regulator receiver domain AFAEC_RS06100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS06100 PF08448 PAS fold AFAEC_RS06100 PF08447 PAS fold AFAEC_RS06105 PF01556 DnaJ C terminal domain AFAEC_RS06105 PF00226 DnaJ domain AFAEC_RS06110 PF13411 MerR HTH family regulatory protein AFAEC_RS06125 PF00317 Ribonucleotide reductase, all-alpha domain AFAEC_RS06125 PF03477 ATP cone domain AFAEC_RS06125 PF02867 Ribonucleotide reductase, barrel domain AFAEC_RS06130 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFAEC_RS06130 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFAEC_RS06135 PF04055 Radical SAM superfamily AFAEC_RS06135 PF06969 HemN C-terminal domain AFAEC_RS06140 PF00593 TonB dependent receptor AFAEC_RS06140 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS06145 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AFAEC_RS06150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFAEC_RS06155 PF02540 NAD synthase AFAEC_RS06170 PF00226 DnaJ domain AFAEC_RS06170 PF05099 Tellurite resistance protein TerB AFAEC_RS06175 PF02416 mttA/Hcf106 family AFAEC_RS06180 PF00902 Sec-independent protein translocase protein (TatC) AFAEC_RS06185 PF02547 Queuosine biosynthesis protein AFAEC_RS06190 PF00929 Exonuclease AFAEC_RS06205 PF02754 Cysteine-rich domain AFAEC_RS06205 PF13183 4Fe-4S dicluster domain AFAEC_RS06205 PF02665 Nitrate reductase gamma subunit AFAEC_RS06210 PF01790 Prolipoprotein diacylglyceryl transferase AFAEC_RS06220 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS06220 PF00072 Response regulator receiver domain AFAEC_RS06225 PF01367 5'-3' exonuclease, C-terminal SAM fold AFAEC_RS06225 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFAEC_RS06225 PF00476 DNA polymerase family A AFAEC_RS06230 PF02348 Cytidylyltransferase AFAEC_RS06245 PF01795 MraW methylase family AFAEC_RS06255 PF00216 Bacterial DNA-binding protein AFAEC_RS06270 PF00872 Transposase, Mutator family AFAEC_RS06275 PF00872 Transposase, Mutator family AFAEC_RS06280 PF00872 Transposase, Mutator family AFAEC_RS06300 PF02092 Glycyl-tRNA synthetase beta subunit AFAEC_RS06320 PF02527 rRNA small subunit methyltransferase G AFAEC_RS06325 PF00925 GTP cyclohydrolase II AFAEC_RS06330 PF00490 Delta-aminolevulinic acid dehydratase AFAEC_RS06335 PF08447 PAS fold AFAEC_RS06335 PF08448 PAS fold AFAEC_RS06335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS06340 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS06340 PF00072 Response regulator receiver domain AFAEC_RS06345 PF03741 Integral membrane protein TerC family AFAEC_RS06350 PF05525 Branched-chain amino acid transport protein AFAEC_RS06360 PF09397 Ftsk gamma domain AFAEC_RS06360 PF17854 FtsK alpha domain AFAEC_RS06360 PF01580 FtsK/SpoIIIE family AFAEC_RS06365 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AFAEC_RS06365 PF00132 Bacterial transferase hexapeptide (six repeats) AFAEC_RS06370 PF10369 Small subunit of acetolactate synthase AFAEC_RS06375 PF00205 Thiamine pyrophosphate enzyme, central domain AFAEC_RS06375 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFAEC_RS06375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFAEC_RS06385 PF02541 Ppx/GppA phosphatase family AFAEC_RS06390 PF01066 CDP-alcohol phosphatidyltransferase AFAEC_RS06395 PF01590 GAF domain AFAEC_RS06395 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS06395 PF00360 Phytochrome region AFAEC_RS06395 PF00563 EAL domain AFAEC_RS06410 PF00085 Thioredoxin AFAEC_RS06420 PF01171 PP-loop family AFAEC_RS06430 PF00994 Probable molybdopterin binding domain AFAEC_RS06430 PF03453 MoeA N-terminal region (domain I and II) AFAEC_RS06430 PF03454 MoeA C-terminal region (domain IV) AFAEC_RS06440 PF04228 Putative neutral zinc metallopeptidase AFAEC_RS06445 PF02646 RmuC family AFAEC_RS06450 PF01435 Peptidase family M48 AFAEC_RS06450 PF16491 CAAX prenyl protease N-terminal, five membrane helices AFAEC_RS06460 PF03061 Thioesterase superfamily AFAEC_RS06470 PF02719 Polysaccharide biosynthesis protein AFAEC_RS06475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFAEC_RS06480 PF00132 Bacterial transferase hexapeptide (six repeats) AFAEC_RS06480 PF17836 PglD N-terminal domain AFAEC_RS06485 PF02397 Bacterial sugar transferase AFAEC_RS06490 PF00534 Glycosyl transferases group 1 AFAEC_RS06490 PF13477 Glycosyl transferase 4-like AFAEC_RS06495 PF00534 Glycosyl transferases group 1 AFAEC_RS06495 PF13439 Glycosyltransferase Family 4 AFAEC_RS06500 PF13537 Glutamine amidotransferase domain AFAEC_RS06500 PF00733 Asparagine synthase AFAEC_RS06510 PF00535 Glycosyl transferase family 2 AFAEC_RS06510 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AFAEC_RS06530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFAEC_RS06530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFAEC_RS06535 PF00550 Phosphopantetheine attachment site AFAEC_RS06545 PF00668 Condensation domain AFAEC_RS06545 PF13193 AMP-binding enzyme C-terminal domain AFAEC_RS06545 PF00501 AMP-binding enzyme AFAEC_RS06545 PF00550 Phosphopantetheine attachment site AFAEC_RS06545 PF00975 Thioesterase domain AFAEC_RS06555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFAEC_RS06560 PF16363 GDP-mannose 4,6 dehydratase AFAEC_RS06565 PF00483 Nucleotidyl transferase AFAEC_RS06570 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFAEC_RS06570 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFAEC_RS06570 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFAEC_RS06575 PF01370 NAD dependent epimerase/dehydratase family AFAEC_RS06580 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFAEC_RS06580 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFAEC_RS06580 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFAEC_RS06600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFAEC_RS06600 PF00529 HlyD membrane-fusion protein of T1SS AFAEC_RS06605 PF00873 AcrB/AcrD/AcrF family AFAEC_RS06620 PF02203 Tar ligand binding domain homologue AFAEC_RS06620 PF00672 HAMP domain AFAEC_RS06620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS06625 PF08459 UvrC Helix-hairpin-helix N-terminal AFAEC_RS06625 PF01541 GIY-YIG catalytic domain AFAEC_RS06625 PF02151 UvrB/uvrC motif AFAEC_RS06630 PF00842 Alanine racemase, C-terminal domain AFAEC_RS06630 PF01168 Alanine racemase, N-terminal domain AFAEC_RS06635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS06635 PF08448 PAS fold AFAEC_RS06635 PF08447 PAS fold AFAEC_RS06645 PF01312 FlhB HrpN YscU SpaS Family AFAEC_RS06655 PF00905 Penicillin binding protein transpeptidase domain AFAEC_RS06655 PF03717 Penicillin-binding Protein dimerisation domain AFAEC_RS06660 PF00813 FliP family AFAEC_RS06665 PF11849 Domain of unknown function (DUF3369) AFAEC_RS06675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFAEC_RS06675 PF00529 HlyD membrane-fusion protein of T1SS AFAEC_RS06680 PF00873 AcrB/AcrD/AcrF family AFAEC_RS06685 PF00873 AcrB/AcrD/AcrF family AFAEC_RS06690 PF00578 AhpC/TSA family AFAEC_RS06695 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFAEC_RS06700 PF12848 ABC transporter AFAEC_RS06700 PF00005 ABC transporter AFAEC_RS06710 PF00881 Nitroreductase family AFAEC_RS06715 PF02525 Flavodoxin-like fold AFAEC_RS06720 PF01638 HxlR-like helix-turn-helix AFAEC_RS06730 PF03601 Conserved hypothetical protein 698 AFAEC_RS06735 PF03466 LysR substrate binding domain AFAEC_RS06735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFAEC_RS06745 PF01161 Phosphatidylethanolamine-binding protein AFAEC_RS06755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS06760 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS06760 PF00072 Response regulator receiver domain AFAEC_RS06770 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFAEC_RS06785 PF00893 Small Multidrug Resistance protein AFAEC_RS06790 PF00005 ABC transporter AFAEC_RS06800 PF03738 Glutathionylspermidine synthase preATP-grasp AFAEC_RS06805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS06805 PF00672 HAMP domain AFAEC_RS06805 PF02203 Tar ligand binding domain homologue AFAEC_RS06820 PF03120 NAD-dependent DNA ligase OB-fold domain AFAEC_RS06820 PF12826 Helix-hairpin-helix motif AFAEC_RS06820 PF01653 NAD-dependent DNA ligase adenylation domain AFAEC_RS06820 PF00533 BRCA1 C Terminus (BRCT) domain AFAEC_RS06825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS06825 PF12729 Four helix bundle sensory module for signal transduction AFAEC_RS06825 PF00672 HAMP domain AFAEC_RS06830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS06830 PF00672 HAMP domain AFAEC_RS06830 PF02203 Tar ligand binding domain homologue AFAEC_RS06835 PF08447 PAS fold AFAEC_RS06835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS06845 PF02203 Tar ligand binding domain homologue AFAEC_RS06845 PF00672 HAMP domain AFAEC_RS06845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS06850 PF08447 PAS fold AFAEC_RS06850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS06855 PF02203 Tar ligand binding domain homologue AFAEC_RS06855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS06855 PF00672 HAMP domain AFAEC_RS06860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS06860 PF02203 Tar ligand binding domain homologue AFAEC_RS06860 PF00672 HAMP domain AFAEC_RS06865 PF04542 Sigma-70 region 2 AFAEC_RS06865 PF08281 Sigma-70, region 4 AFAEC_RS06880 PF00933 Glycosyl hydrolase family 3 N terminal domain AFAEC_RS06880 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFAEC_RS06885 PF00226 DnaJ domain AFAEC_RS06885 PF01556 DnaJ C terminal domain AFAEC_RS06885 PF00684 DnaJ central domain AFAEC_RS06890 PF01556 DnaJ C terminal domain AFAEC_RS06890 PF00684 DnaJ central domain AFAEC_RS06890 PF00226 DnaJ domain AFAEC_RS06900 PF02203 Tar ligand binding domain homologue AFAEC_RS06900 PF00672 HAMP domain AFAEC_RS06900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS06905 PF03061 Thioesterase superfamily AFAEC_RS06910 PF00583 Acetyltransferase (GNAT) family AFAEC_RS06915 PF01926 50S ribosome-binding GTPase AFAEC_RS06935 PF00475 Imidazoleglycerol-phosphate dehydratase AFAEC_RS06940 PF03330 Lytic transglycolase AFAEC_RS06940 PF05036 Sporulation related domain AFAEC_RS06945 PF01476 LysM domain AFAEC_RS06945 PF01464 Transglycosylase SLT domain AFAEC_RS06950 PF01026 TatD related DNase AFAEC_RS06960 PF07724 AAA domain (Cdc48 subfamily) AFAEC_RS06960 PF10431 C-terminal, D2-small domain, of ClpB protein AFAEC_RS06965 PF00227 Proteasome subunit AFAEC_RS06970 PF01281 Ribosomal protein L9, N-terminal domain AFAEC_RS06970 PF03948 Ribosomal protein L9, C-terminal domain AFAEC_RS06980 PF02441 Flavoprotein AFAEC_RS06985 PF01467 Cytidylyltransferase-like AFAEC_RS06990 PF02223 Thymidylate kinase AFAEC_RS06995 PF03129 Anticodon binding domain AFAEC_RS06995 PF13393 Histidyl-tRNA synthetase AFAEC_RS07000 PF17944 Arginine decarboxylase C-terminal helical extension AFAEC_RS07000 PF17810 Arginine decarboxylase helical bundle domain AFAEC_RS07000 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFAEC_RS07005 PF06426 Serine acetyltransferase, N-terminal AFAEC_RS07005 PF00132 Bacterial transferase hexapeptide (six repeats) AFAEC_RS07010 PF01925 Sulfite exporter TauE/SafE AFAEC_RS07020 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFAEC_RS07025 PF16326 ABC transporter C-terminal domain AFAEC_RS07025 PF00005 ABC transporter AFAEC_RS07025 PF12848 ABC transporter AFAEC_RS07035 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS07035 PF17158 Membrane-associated sensor, integral membrane domain AFAEC_RS07040 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFAEC_RS07040 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFAEC_RS07050 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS07050 PF12911 N-terminal TM domain of oligopeptide transport permease C AFAEC_RS07060 PF12072 Domain of unknown function (DUF3552) AFAEC_RS07060 PF01966 HD domain AFAEC_RS07060 PF00013 KH domain AFAEC_RS07065 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFAEC_RS07070 PF00578 AhpC/TSA family AFAEC_RS07075 PF00448 SRP54-type protein, GTPase domain AFAEC_RS07090 PF03150 Di-haem cytochrome c peroxidase AFAEC_RS07090 PF00034 Cytochrome c AFAEC_RS07105 PF03797 Autotransporter beta-domain AFAEC_RS07115 PF18073 Rubredoxin metal binding domain AFAEC_RS07125 PF02130 Uncharacterized protein family UPF0054 AFAEC_RS07130 PF01475 Ferric uptake regulator family AFAEC_RS07140 PF03023 Lipid II flippase MurJ AFAEC_RS07145 PF00005 ABC transporter AFAEC_RS07145 PF00664 ABC transporter transmembrane region AFAEC_RS07150 PF01180 Dihydroorotate dehydrogenase AFAEC_RS07160 PF00701 Dihydrodipicolinate synthetase family AFAEC_RS07170 PF01066 CDP-alcohol phosphatidyltransferase AFAEC_RS07175 PF17820 PDZ domain AFAEC_RS07175 PF02163 Peptidase family M50 AFAEC_RS07180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS07180 PF02203 Tar ligand binding domain homologue AFAEC_RS07180 PF00672 HAMP domain AFAEC_RS07190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS07190 PF02203 Tar ligand binding domain homologue AFAEC_RS07190 PF00672 HAMP domain AFAEC_RS07215 PF04717 Type VI secretion system, phage-baseplate injector AFAEC_RS07220 PF01168 Alanine racemase, N-terminal domain AFAEC_RS07225 PF01361 Tautomerase enzyme AFAEC_RS07230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFAEC_RS07230 PF03466 LysR substrate binding domain AFAEC_RS07245 PF00563 EAL domain AFAEC_RS07245 PF01590 GAF domain AFAEC_RS07245 PF00360 Phytochrome region AFAEC_RS07245 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS07255 PF00072 Response regulator receiver domain AFAEC_RS07255 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS07275 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS07275 PF00072 Response regulator receiver domain AFAEC_RS07285 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS07285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS07290 PF13277 YmdB-like protein AFAEC_RS07295 PF00218 Indole-3-glycerol phosphate synthase AFAEC_RS07305 PF03692 Putative zinc- or iron-chelating domain AFAEC_RS07310 PF05175 Methyltransferase small domain AFAEC_RS07320 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFAEC_RS07320 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AFAEC_RS07320 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AFAEC_RS07325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFAEC_RS07335 PF00465 Iron-containing alcohol dehydrogenase AFAEC_RS07340 PF07690 Major Facilitator Superfamily AFAEC_RS07345 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFAEC_RS07360 PF06719 AraC-type transcriptional regulator N-terminus AFAEC_RS07360 PF12833 Helix-turn-helix domain AFAEC_RS07365 PF00155 Aminotransferase class I and II AFAEC_RS07385 PF05191 Adenylate kinase, active site lid AFAEC_RS07400 PF02938 GAD domain AFAEC_RS07400 PF00152 tRNA synthetases class II (D, K and N) AFAEC_RS07400 PF01336 OB-fold nucleic acid binding domain AFAEC_RS07410 PF03167 Uracil DNA glycosylase superfamily AFAEC_RS07415 PF01176 Translation initiation factor 1A / IF-1 AFAEC_RS07420 PF00557 Metallopeptidase family M24 AFAEC_RS07425 PF00344 SecY translocase AFAEC_RS07430 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AFAEC_RS07435 PF03719 Ribosomal protein S5, C-terminal domain AFAEC_RS07435 PF00333 Ribosomal protein S5, N-terminal domain AFAEC_RS07440 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AFAEC_RS07445 PF00347 Ribosomal protein L6 AFAEC_RS07450 PF00410 Ribosomal protein S8 AFAEC_RS07455 PF00253 Ribosomal protein S14p/S29e AFAEC_RS07460 PF00281 Ribosomal protein L5 AFAEC_RS07460 PF00673 ribosomal L5P family C-terminus AFAEC_RS07465 PF00467 KOW motif AFAEC_RS07465 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AFAEC_RS07470 PF00238 Ribosomal protein L14p/L23e AFAEC_RS07475 PF00366 Ribosomal protein S17 AFAEC_RS07480 PF00831 Ribosomal L29 protein AFAEC_RS07485 PF00252 Ribosomal protein L16p/L10e AFAEC_RS07490 PF00189 Ribosomal protein S3, C-terminal domain AFAEC_RS07490 PF07650 KH domain AFAEC_RS07495 PF00237 Ribosomal protein L22p/L17e AFAEC_RS07500 PF00203 Ribosomal protein S19 AFAEC_RS07505 PF03947 Ribosomal Proteins L2, C-terminal domain AFAEC_RS07505 PF00181 Ribosomal Proteins L2, RNA binding domain AFAEC_RS07510 PF00276 Ribosomal protein L23 AFAEC_RS07515 PF00573 Ribosomal protein L4/L1 family AFAEC_RS07520 PF00297 Ribosomal protein L3 AFAEC_RS07525 PF00338 Ribosomal protein S10p/S20e AFAEC_RS07540 PF02875 Mur ligase family, glutamate ligase domain AFAEC_RS07540 PF01225 Mur ligase family, catalytic domain AFAEC_RS07540 PF08245 Mur ligase middle domain AFAEC_RS07550 PF07478 D-ala D-ala ligase C-terminus AFAEC_RS07550 PF01820 D-ala D-ala ligase N-terminus AFAEC_RS07555 PF07499 RuvA, C-terminal domain AFAEC_RS07555 PF01330 RuvA N terminal domain AFAEC_RS07560 PF02203 Tar ligand binding domain homologue AFAEC_RS07560 PF00672 HAMP domain AFAEC_RS07560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS07570 PF01142 tRNA pseudouridine synthase D (TruD) AFAEC_RS07575 PF00586 AIR synthase related protein, N-terminal domain AFAEC_RS07575 PF02769 AIR synthase related protein, C-terminal domain AFAEC_RS07585 PF06865 Pyrimidine/purine nucleoside phosphorylase AFAEC_RS07605 PF06071 Protein of unknown function (DUF933) AFAEC_RS07605 PF01926 50S ribosome-binding GTPase AFAEC_RS07610 PF02554 Carbon starvation protein CstA AFAEC_RS07610 PF13722 5TM C-terminal transporter carbon starvation CstA AFAEC_RS07630 PF10119 Predicted methyltransferase regulatory domain AFAEC_RS07630 PF13847 Methyltransferase domain AFAEC_RS07635 PF00593 TonB dependent receptor AFAEC_RS07635 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS07675 PF02687 FtsX-like permease family AFAEC_RS07675 PF12704 MacB-like periplasmic core domain AFAEC_RS07675 PF00005 ABC transporter AFAEC_RS07680 PF00005 ABC transporter AFAEC_RS07680 PF12704 MacB-like periplasmic core domain AFAEC_RS07680 PF02687 FtsX-like permease family AFAEC_RS07695 PF01618 MotA/TolQ/ExbB proton channel family AFAEC_RS07700 PF02472 Biopolymer transport protein ExbD/TolR AFAEC_RS07710 PF02789 Cytosol aminopeptidase family, N-terminal domain AFAEC_RS07710 PF00883 Cytosol aminopeptidase family, catalytic domain AFAEC_RS07720 PF00291 Pyridoxal-phosphate dependent enzyme AFAEC_RS07725 PF00156 Phosphoribosyl transferase domain AFAEC_RS07730 PF14743 DNA ligase OB-like domain AFAEC_RS07730 PF01068 ATP dependent DNA ligase domain AFAEC_RS07735 PF07963 Prokaryotic N-terminal methylation motif AFAEC_RS07740 PF03796 DnaB-like helicase C terminal domain AFAEC_RS07740 PF00772 DnaB-like helicase N terminal domain AFAEC_RS07745 PF04551 GcpE protein AFAEC_RS07760 PF00152 tRNA synthetases class II (D, K and N) AFAEC_RS07760 PF01336 OB-fold nucleic acid binding domain AFAEC_RS07765 PF00464 Serine hydroxymethyltransferase AFAEC_RS07775 PF00425 chorismate binding enzyme AFAEC_RS07775 PF04715 Anthranilate synthase component I, N terminal region AFAEC_RS07780 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AFAEC_RS07785 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AFAEC_RS07795 PF00696 Amino acid kinase family AFAEC_RS07800 PF01192 RNA polymerase Rpb6 AFAEC_RS07805 PF04607 Region found in RelA / SpoT proteins AFAEC_RS07805 PF13291 ACT domain AFAEC_RS07805 PF02824 TGS domain AFAEC_RS07810 PF00579 tRNA synthetases class I (W and Y) AFAEC_RS07810 PF01479 S4 domain AFAEC_RS07820 PF01520 N-acetylmuramoyl-L-alanine amidase AFAEC_RS07825 PF04717 Type VI secretion system, phage-baseplate injector AFAEC_RS07855 PF01195 Peptidyl-tRNA hydrolase AFAEC_RS07860 PF01386 Ribosomal L25p family AFAEC_RS07860 PF14693 Ribosomal protein TL5, C-terminal domain AFAEC_RS07865 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFAEC_RS07865 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFAEC_RS07870 PF10502 Signal peptidase, peptidase S26 AFAEC_RS07875 PF02502 Ribose/Galactose Isomerase AFAEC_RS07885 PF00672 HAMP domain AFAEC_RS07885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS07885 PF02203 Tar ligand binding domain homologue AFAEC_RS07890 PF00672 HAMP domain AFAEC_RS07890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS07890 PF02203 Tar ligand binding domain homologue AFAEC_RS07895 PF02203 Tar ligand binding domain homologue AFAEC_RS07895 PF00672 HAMP domain AFAEC_RS07895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS07900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS07900 PF13426 PAS domain AFAEC_RS07900 PF08447 PAS fold AFAEC_RS07910 PF08479 POTRA domain, ShlB-type AFAEC_RS07910 PF17287 POTRA domain AFAEC_RS07910 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AFAEC_RS07915 PF05860 haemagglutination activity domain AFAEC_RS07930 PF10576 Iron-sulfur binding domain of endonuclease III AFAEC_RS07930 PF00633 Helix-hairpin-helix motif AFAEC_RS07930 PF00730 HhH-GPD superfamily base excision DNA repair protein AFAEC_RS07935 PF04851 Type III restriction enzyme, res subunit AFAEC_RS07935 PF02151 UvrB/uvrC motif AFAEC_RS07935 PF00271 Helicase conserved C-terminal domain AFAEC_RS07935 PF17757 UvrB interaction domain AFAEC_RS07935 PF12344 Ultra-violet resistance protein B AFAEC_RS07950 PF01272 Transcription elongation factor, GreA/GreB, C-term AFAEC_RS07950 PF03449 Transcription elongation factor, N-terminal AFAEC_RS07955 PF00899 ThiF family AFAEC_RS07960 PF01584 CheW-like domain AFAEC_RS07960 PF00072 Response regulator receiver domain AFAEC_RS07965 PF00206 Lyase AFAEC_RS07965 PF14698 Argininosuccinate lyase C-terminal AFAEC_RS07970 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS07970 PF07694 5TMR of 5TMR-LYT AFAEC_RS07975 PF00571 CBS domain AFAEC_RS07975 PF00005 ABC transporter AFAEC_RS07980 PF01106 NifU-like domain AFAEC_RS07980 PF01592 NifU-like N terminal domain AFAEC_RS07980 PF04324 BFD-like [2Fe-2S] binding domain AFAEC_RS07985 PF01458 Uncharacterized protein family (UPF0051) AFAEC_RS07990 PF00005 ABC transporter AFAEC_RS08000 PF00266 Aminotransferase class-V AFAEC_RS08005 PF02657 Fe-S metabolism associated domain AFAEC_RS08010 PF01883 Iron-sulfur cluster assembly protein AFAEC_RS08030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFAEC_RS08030 PF00289 Biotin carboxylase, N-terminal domain AFAEC_RS08030 PF02785 Biotin carboxylase C-terminal domain AFAEC_RS08035 PF00892 EamA-like transporter family AFAEC_RS08045 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS08045 PF08448 PAS fold AFAEC_RS08050 PF00672 HAMP domain AFAEC_RS08050 PF02203 Tar ligand binding domain homologue AFAEC_RS08050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS08055 PF08447 PAS fold AFAEC_RS08055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS08065 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AFAEC_RS08070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS08070 PF00672 HAMP domain AFAEC_RS08070 PF02203 Tar ligand binding domain homologue AFAEC_RS08075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS08075 PF08447 PAS fold AFAEC_RS08080 PF08447 PAS fold AFAEC_RS08080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS08080 PF13426 PAS domain AFAEC_RS08085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFAEC_RS08095 PF13186 Iron-sulfur cluster-binding domain AFAEC_RS08095 PF04055 Radical SAM superfamily AFAEC_RS08115 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFAEC_RS08125 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFAEC_RS08130 PF00034 Cytochrome c AFAEC_RS08145 PF05362 Lon protease (S16) C-terminal proteolytic domain AFAEC_RS08145 PF02190 ATP-dependent protease La (LON) substrate-binding domain AFAEC_RS08145 PF00004 ATPase family associated with various cellular activities (AAA) AFAEC_RS08150 PF13525 Outer membrane lipoprotein AFAEC_RS08155 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFAEC_RS08155 PF03807 NADP oxidoreductase coenzyme F420-dependent AFAEC_RS08175 PF01725 Ham1 family AFAEC_RS08180 PF07690 Major Facilitator Superfamily AFAEC_RS08190 PF00563 EAL domain AFAEC_RS08190 PF12792 CSS motif domain associated with EAL AFAEC_RS08195 PF02698 DUF218 domain AFAEC_RS08200 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFAEC_RS08200 PF00753 Metallo-beta-lactamase superfamily AFAEC_RS08215 PF08264 Anticodon-binding domain of tRNA AFAEC_RS08215 PF10458 Valyl tRNA synthetase tRNA binding arm AFAEC_RS08215 PF00133 tRNA synthetases class I (I, L, M and V) AFAEC_RS08220 PF01047 MarR family AFAEC_RS08235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFAEC_RS08235 PF14824 Sirohaem biosynthesis protein central AFAEC_RS08235 PF10414 Sirohaem synthase dimerisation region AFAEC_RS08240 PF17805 AsnC-like ligand binding domain AFAEC_RS08260 PF00206 Lyase AFAEC_RS08260 PF10415 Fumarase C C-terminus AFAEC_RS08265 PF01048 Phosphorylase superfamily AFAEC_RS08270 PF00698 Acyl transferase domain AFAEC_RS08275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFAEC_RS08285 PF00691 OmpA family AFAEC_RS08285 PF01389 OmpA-like transmembrane domain AFAEC_RS08290 PF04052 TolB amino-terminal domain AFAEC_RS08300 PF02472 Biopolymer transport protein ExbD/TolR AFAEC_RS08305 PF01618 MotA/TolQ/ExbB proton channel family AFAEC_RS08310 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFAEC_RS08315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFAEC_RS08315 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFAEC_RS08320 PF00231 ATP synthase AFAEC_RS08325 PF00306 ATP synthase alpha/beta chain, C terminal domain AFAEC_RS08325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFAEC_RS08325 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFAEC_RS08330 PF00213 ATP synthase delta (OSCP) subunit AFAEC_RS08335 PF00430 ATP synthase B/B' CF(0) AFAEC_RS08345 PF17762 HTH domain found in ParB protein AFAEC_RS08345 PF02195 ParB-like nuclease domain AFAEC_RS08350 PF13614 AAA domain AFAEC_RS08365 PF02911 Formyl transferase, C-terminal domain AFAEC_RS08365 PF00551 Formyl transferase AFAEC_RS08370 PF00696 Amino acid kinase family AFAEC_RS08375 PF01018 GTP1/OBG AFAEC_RS08375 PF01926 50S ribosome-binding GTPase AFAEC_RS08380 PF01016 Ribosomal L27 protein AFAEC_RS08385 PF00829 Ribosomal prokaryotic L21 protein AFAEC_RS08390 PF13662 Toprim domain AFAEC_RS08390 PF08275 DNA primase catalytic core, N-terminal domain AFAEC_RS08390 PF16730 DnaG-primase C-terminal, helicase-binding domain AFAEC_RS08390 PF01807 CHC2 zinc finger AFAEC_RS08400 PF14622 Ribonuclease-III-like AFAEC_RS08400 PF00035 Double-stranded RNA binding motif AFAEC_RS08405 PF01264 Chorismate synthase AFAEC_RS08415 PF00884 Sulfatase AFAEC_RS08435 PF01522 Polysaccharide deacetylase AFAEC_RS08440 PF00669 Bacterial flagellin N-terminal helical region AFAEC_RS08440 PF07196 Flagellin hook IN motif AFAEC_RS08440 PF00700 Bacterial flagellin C-terminal helical region AFAEC_RS08445 PF07007 Lysozyme inhibitor LprI AFAEC_RS08460 PF00669 Bacterial flagellin N-terminal helical region AFAEC_RS08460 PF00700 Bacterial flagellin C-terminal helical region AFAEC_RS08460 PF07196 Flagellin hook IN motif AFAEC_RS08465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS08470 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS08470 PF00072 Response regulator receiver domain AFAEC_RS08480 PF00300 Histidine phosphatase superfamily (branch 1) AFAEC_RS08490 PF01926 50S ribosome-binding GTPase AFAEC_RS08490 PF10396 GTP-binding protein TrmE N-terminus AFAEC_RS08490 PF12631 MnmE helical domain AFAEC_RS08500 PF14849 YidC periplasmic domain AFAEC_RS08500 PF02096 60Kd inner membrane protein AFAEC_RS08505 PF01809 Putative membrane protein insertion efficiency factor AFAEC_RS08510 PF00825 Ribonuclease P AFAEC_RS08515 PF00468 Ribosomal protein L34 AFAEC_RS08520 PF17871 AAA lid domain AFAEC_RS08520 PF07724 AAA domain (Cdc48 subfamily) AFAEC_RS08520 PF00004 ATPase family associated with various cellular activities (AAA) AFAEC_RS08520 PF02861 Clp amino terminal domain, pathogenicity island component AFAEC_RS08520 PF10431 C-terminal, D2-small domain, of ClpB protein AFAEC_RS08525 PF01351 Ribonuclease HII AFAEC_RS08530 PF03976 Polyphosphate kinase 2 (PPK2) AFAEC_RS08545 PF01625 Peptide methionine sulfoxide reductase AFAEC_RS08605 PF01641 SelR domain AFAEC_RS08615 PF00293 NUDIX domain AFAEC_RS08620 PF00202 Aminotransferase class-III AFAEC_RS08625 PF08447 PAS fold AFAEC_RS08625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS08625 PF08448 PAS fold AFAEC_RS08630 PF02142 MGS-like domain AFAEC_RS08630 PF01808 AICARFT/IMPCHase bienzyme AFAEC_RS08635 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFAEC_RS08635 PF00586 AIR synthase related protein, N-terminal domain AFAEC_RS08635 PF02769 AIR synthase related protein, C-terminal domain AFAEC_RS08645 PF01551 Peptidase family M23 AFAEC_RS08645 PF10145 Phage-related minor tail protein AFAEC_RS08645 PF01464 Transglycosylase SLT domain AFAEC_RS08650 PF01227 GTP cyclohydrolase I AFAEC_RS08655 PF01544 CorA-like Mg2+ transporter protein AFAEC_RS08660 PF00482 Type II secretion system (T2SS), protein F AFAEC_RS08665 PF00437 Type II/IV secretion system protein AFAEC_RS08680 PF07650 KH domain AFAEC_RS08680 PF01926 50S ribosome-binding GTPase AFAEC_RS08695 PF01053 Cys/Met metabolism PLP-dependent enzyme AFAEC_RS08700 PF01053 Cys/Met metabolism PLP-dependent enzyme AFAEC_RS08715 PF03824 High-affinity nickel-transport protein AFAEC_RS08720 PF01297 Zinc-uptake complex component A periplasmic AFAEC_RS08730 PF06965 Na+/H+ antiporter 1 AFAEC_RS08740 PF00593 TonB dependent receptor AFAEC_RS08740 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS08745 PF03150 Di-haem cytochrome c peroxidase AFAEC_RS08750 PF04116 Fatty acid hydroxylase superfamily AFAEC_RS08775 PF00137 ATP synthase subunit C AFAEC_RS08800 PF09397 Ftsk gamma domain AFAEC_RS08800 PF01580 FtsK/SpoIIIE family AFAEC_RS08800 PF17854 FtsK alpha domain AFAEC_RS08845 PF00171 Aldehyde dehydrogenase family AFAEC_RS08875 PF00182 Chitinase class I AFAEC_RS08880 PF04717 Type VI secretion system, phage-baseplate injector AFAEC_RS08885 PF00069 Protein kinase domain AFAEC_RS08885 PF13360 PQQ-like domain AFAEC_RS08900 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AFAEC_RS08915 PF00004 ATPase family associated with various cellular activities (AAA) AFAEC_RS08915 PF10431 C-terminal, D2-small domain, of ClpB protein AFAEC_RS08915 PF17871 AAA lid domain AFAEC_RS08915 PF07724 AAA domain (Cdc48 subfamily) AFAEC_RS08925 PF05947 Type VI secretion system, TssF AFAEC_RS08935 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AFAEC_RS09000 PF03461 TRCF domain AFAEC_RS09000 PF17757 UvrB interaction domain AFAEC_RS09000 PF00270 DEAD/DEAH box helicase AFAEC_RS09000 PF00271 Helicase conserved C-terminal domain AFAEC_RS09000 PF02559 CarD-like/TRCF domain AFAEC_RS09035 PF08245 Mur ligase middle domain AFAEC_RS09045 PF00133 tRNA synthetases class I (I, L, M and V) AFAEC_RS09045 PF13603 Leucyl-tRNA synthetase, Domain 2 AFAEC_RS09045 PF09334 tRNA synthetases class I (M) AFAEC_RS09055 PF01618 MotA/TolQ/ExbB proton channel family AFAEC_RS09060 PF00691 OmpA family AFAEC_RS09060 PF13677 Membrane MotB of proton-channel complex MotA/MotB AFAEC_RS09075 PF02355 Protein export membrane protein AFAEC_RS09075 PF07549 SecD/SecF GG Motif AFAEC_RS09080 PF02355 Protein export membrane protein AFAEC_RS09085 PF02699 Preprotein translocase subunit AFAEC_RS09095 PF00106 short chain dehydrogenase AFAEC_RS09115 PF01966 HD domain AFAEC_RS09115 PF01743 Poly A polymerase head domain AFAEC_RS09115 PF12627 Probable RNA and SrmB- binding site of polymerase A AFAEC_RS09120 PF00924 Mechanosensitive ion channel AFAEC_RS09120 PF05552 Conserved TM helix AFAEC_RS09125 PF04073 Aminoacyl-tRNA editing domain AFAEC_RS09125 PF03129 Anticodon binding domain AFAEC_RS09125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFAEC_RS09130 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFAEC_RS09130 PF01488 Shikimate / quinate 5-dehydrogenase AFAEC_RS09130 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFAEC_RS09135 PF00348 Polyprenyl synthetase AFAEC_RS09145 PF00815 Histidinol dehydrogenase AFAEC_RS09150 PF01202 Shikimate kinase AFAEC_RS09160 PF01618 MotA/TolQ/ExbB proton channel family AFAEC_RS09165 PF02472 Biopolymer transport protein ExbD/TolR AFAEC_RS09180 PF08546 Ketopantoate reductase PanE/ApbA C terminal AFAEC_RS09180 PF02558 Ketopantoate reductase PanE/ApbA AFAEC_RS09185 PF00561 alpha/beta hydrolase fold AFAEC_RS09190 PF01361 Tautomerase enzyme AFAEC_RS09200 PF07836 DmpG-like communication domain AFAEC_RS09200 PF00682 HMGL-like AFAEC_RS09205 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFAEC_RS09205 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AFAEC_RS09215 PF00171 Aldehyde dehydrogenase family AFAEC_RS09220 PF03928 Haem-degrading AFAEC_RS09225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFAEC_RS09235 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFAEC_RS09235 PF00056 lactate/malate dehydrogenase, NAD binding domain AFAEC_RS09240 PF01925 Sulfite exporter TauE/SafE AFAEC_RS09245 PF00970 Oxidoreductase FAD-binding domain AFAEC_RS09245 PF00175 Oxidoreductase NAD-binding domain AFAEC_RS09245 PF00111 2Fe-2S iron-sulfur cluster binding domain AFAEC_RS09255 PF04945 YHS domain AFAEC_RS09255 PF02332 Methane/Phenol/Toluene Hydroxylase AFAEC_RS09260 PF02406 MmoB/DmpM family AFAEC_RS09265 PF02332 Methane/Phenol/Toluene Hydroxylase AFAEC_RS09275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS09275 PF12282 Signal transduction histidine kinase AFAEC_RS09275 PF07568 Histidine kinase AFAEC_RS09280 PF00158 Sigma-54 interaction domain AFAEC_RS09280 PF02954 Bacterial regulatory protein, Fis family AFAEC_RS09280 PF00072 Response regulator receiver domain AFAEC_RS09285 PF00171 Aldehyde dehydrogenase family AFAEC_RS09290 PF01116 Fructose-bisphosphate aldolase class-II AFAEC_RS09295 PF00639 PPIC-type PPIASE domain AFAEC_RS09300 PF00072 Response regulator receiver domain AFAEC_RS09300 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS09305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS09305 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS09325 PF00312 Ribosomal protein S15 AFAEC_RS09330 PF04055 Radical SAM superfamily AFAEC_RS09330 PF06463 Molybdenum Cofactor Synthesis C AFAEC_RS09335 PF00591 Glycosyl transferase family, a/b domain AFAEC_RS09335 PF02885 Glycosyl transferase family, helical bundle domain AFAEC_RS09350 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFAEC_RS09350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFAEC_RS09350 PF00384 Molybdopterin oxidoreductase AFAEC_RS09350 PF01568 Molydopterin dinucleotide binding domain AFAEC_RS09355 PF12838 4Fe-4S dicluster domain AFAEC_RS09355 PF12800 4Fe-4S binding domain AFAEC_RS09360 PF00037 4Fe-4S binding domain AFAEC_RS09360 PF12801 4Fe-4S binding domain AFAEC_RS09365 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AFAEC_RS09385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS09385 PF08447 PAS fold AFAEC_RS09390 PF08448 PAS fold AFAEC_RS09390 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS09390 PF00563 EAL domain AFAEC_RS09400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFAEC_RS09400 PF02403 Seryl-tRNA synthetase N-terminal domain AFAEC_RS09410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFAEC_RS09415 PF00005 ABC transporter AFAEC_RS09430 PF01545 Cation efflux family AFAEC_RS09430 PF16916 Dimerisation domain of Zinc Transporter AFAEC_RS09440 PF12833 Helix-turn-helix domain AFAEC_RS09445 PF00593 TonB dependent receptor AFAEC_RS09445 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS09450 PF04954 Siderophore-interacting protein AFAEC_RS09450 PF08021 Siderophore-interacting FAD-binding domain AFAEC_RS09450 PF00005 ABC transporter AFAEC_RS09450 PF00664 ABC transporter transmembrane region AFAEC_RS09455 PF00005 ABC transporter AFAEC_RS09455 PF00664 ABC transporter transmembrane region AFAEC_RS09465 PF07690 Major Facilitator Superfamily AFAEC_RS09470 PF02659 Putative manganese efflux pump AFAEC_RS09475 PF00579 tRNA synthetases class I (W and Y) AFAEC_RS09480 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS09480 PF08448 PAS fold AFAEC_RS09490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS09490 PF08447 PAS fold AFAEC_RS09495 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS09495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS09495 PF00672 HAMP domain AFAEC_RS09495 PF00072 Response regulator receiver domain AFAEC_RS09495 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AFAEC_RS09495 PF01627 Hpt domain AFAEC_RS09500 PF00072 Response regulator receiver domain AFAEC_RS09510 PF06977 SdiA-regulated AFAEC_RS09520 PF01634 ATP phosphoribosyltransferase AFAEC_RS09525 PF03309 Type III pantothenate kinase AFAEC_RS09535 PF06738 Putative threonine/serine exporter AFAEC_RS09540 PF06738 Putative threonine/serine exporter AFAEC_RS09540 PF12821 Threonine/Serine exporter, ThrE AFAEC_RS09545 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AFAEC_RS09550 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFAEC_RS09555 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFAEC_RS09560 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFAEC_RS09560 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFAEC_RS09570 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFAEC_RS09570 PF10531 SLBB domain AFAEC_RS09570 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFAEC_RS09575 PF00285 Citrate synthase, C-terminal domain AFAEC_RS09580 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFAEC_RS09580 PF00384 Molybdopterin oxidoreductase AFAEC_RS09580 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AFAEC_RS09585 PF00146 NADH dehydrogenase AFAEC_RS09590 PF12838 4Fe-4S dicluster domain AFAEC_RS09595 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFAEC_RS09600 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFAEC_RS09605 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFAEC_RS09605 PF00361 Proton-conducting membrane transporter AFAEC_RS09610 PF00361 Proton-conducting membrane transporter AFAEC_RS09610 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AFAEC_RS09615 PF00361 Proton-conducting membrane transporter AFAEC_RS09620 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFAEC_RS09625 PF00890 FAD binding domain AFAEC_RS09625 PF02910 Fumarate reductase flavoprotein C-term AFAEC_RS09630 PF13085 2Fe-2S iron-sulfur cluster binding domain AFAEC_RS09630 PF13183 4Fe-4S dicluster domain AFAEC_RS09635 PF00350 Dynamin family AFAEC_RS09640 PF00350 Dynamin family AFAEC_RS09645 PF08274 PhnA Zinc-Ribbon AFAEC_RS09645 PF03831 PhnA domain AFAEC_RS09655 PF01627 Hpt domain AFAEC_RS09655 PF00072 Response regulator receiver domain AFAEC_RS09655 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS09665 PF02203 Tar ligand binding domain homologue AFAEC_RS09665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS09665 PF00672 HAMP domain AFAEC_RS09680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS09680 PF00672 HAMP domain AFAEC_RS09680 PF02203 Tar ligand binding domain homologue AFAEC_RS09685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS09685 PF08447 PAS fold AFAEC_RS09695 PF08447 PAS fold AFAEC_RS09695 PF08448 PAS fold AFAEC_RS09695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS09715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFAEC_RS09715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFAEC_RS09730 PF00285 Citrate synthase, C-terminal domain AFAEC_RS09735 PF00330 Aconitase family (aconitate hydratase) AFAEC_RS09735 PF00694 Aconitase C-terminal domain AFAEC_RS09740 PF04303 PrpF protein AFAEC_RS09745 PF00857 Isochorismatase family AFAEC_RS09750 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFAEC_RS09750 PF03900 Porphobilinogen deaminase, C-terminal domain AFAEC_RS09760 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AFAEC_RS09760 PF12169 DNA polymerase III subunits gamma and tau domain III AFAEC_RS09760 PF12170 DNA polymerase III tau subunit V interacting with alpha AFAEC_RS09765 PF01177 Asp/Glu/Hydantoin racemase AFAEC_RS09775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFAEC_RS09775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFAEC_RS09780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFAEC_RS09780 PF07498 Rho termination factor, N-terminal domain AFAEC_RS09780 PF07497 Rho termination factor, RNA-binding domain AFAEC_RS09785 PF00578 AhpC/TSA family AFAEC_RS09785 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFAEC_RS09795 PF00334 Nucleoside diphosphate kinase AFAEC_RS09805 PF01783 Ribosomal L32p protein family AFAEC_RS09810 PF02504 Fatty acid synthesis protein AFAEC_RS09815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFAEC_RS09815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFAEC_RS09835 PF00425 chorismate binding enzyme AFAEC_RS09840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFAEC_RS09840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFAEC_RS09850 PF05538 Campylobacter major outer membrane protein AFAEC_RS09865 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFAEC_RS09865 PF02154 Flagellar motor switch protein FliM AFAEC_RS09870 PF02119 Flagellar P-ring protein AFAEC_RS09880 PF01313 Bacterial export proteins, family 3 AFAEC_RS09905 PF02107 Flagellar L-ring protein AFAEC_RS09915 PF02465 Flagellar hook-associated protein 2 N-terminus AFAEC_RS09915 PF07195 Flagellar hook-associated protein 2 C-terminus AFAEC_RS09915 PF07196 Flagellin hook IN motif AFAEC_RS09920 PF02561 Flagellar protein FliS AFAEC_RS09930 PF04055 Radical SAM superfamily AFAEC_RS09940 PF00484 Carbonic anhydrase AFAEC_RS09945 PF00155 Aminotransferase class I and II AFAEC_RS09950 PF02021 Uncharacterised protein family UPF0102 AFAEC_RS09965 PF00691 OmpA family AFAEC_RS09965 PF00223 Photosystem I psaA/psaB protein AFAEC_RS09975 PF00224 Pyruvate kinase, barrel domain AFAEC_RS09975 PF00391 PEP-utilising enzyme, mobile domain AFAEC_RS09975 PF02887 Pyruvate kinase, alpha/beta domain AFAEC_RS09985 PF01975 Survival protein SurE AFAEC_RS09990 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFAEC_RS09990 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFAEC_RS09990 PF14579 Helix-hairpin-helix motif AFAEC_RS09990 PF02811 PHP domain AFAEC_RS09995 PF01965 DJ-1/PfpI family AFAEC_RS10010 PF02272 DHHA1 domain AFAEC_RS10010 PF17768 RecJ OB domain AFAEC_RS10010 PF01368 DHH family AFAEC_RS10015 PF06418 CTP synthase N-terminus AFAEC_RS10015 PF00117 Glutamine amidotransferase class-I AFAEC_RS10020 PF13746 4Fe-4S dicluster domain AFAEC_RS10020 PF12801 4Fe-4S binding domain AFAEC_RS10020 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AFAEC_RS10030 PF00202 Aminotransferase class-III AFAEC_RS10035 PF02152 Dihydroneopterin aldolase AFAEC_RS10040 PF02660 Glycerol-3-phosphate acyltransferase AFAEC_RS10045 PF02445 Quinolinate synthetase A protein AFAEC_RS10050 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFAEC_RS10050 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFAEC_RS10055 PF02272 DHHA1 domain AFAEC_RS10055 PF01368 DHH family AFAEC_RS10065 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AFAEC_RS10075 PF08544 GHMP kinases C terminal AFAEC_RS10075 PF00288 GHMP kinases N terminal domain AFAEC_RS10085 PF11987 Translation-initiation factor 2 AFAEC_RS10085 PF04760 Translation initiation factor IF-2, N-terminal region AFAEC_RS10085 PF00009 Elongation factor Tu GTP binding domain AFAEC_RS10090 PF02033 Ribosome-binding factor A AFAEC_RS10095 PF02576 RimP N-terminal domain AFAEC_RS10100 PF01872 RibD C-terminal domain AFAEC_RS10100 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFAEC_RS10110 PF04028 Domain of unknown function (DUF374) AFAEC_RS10115 PF01938 TRAM domain AFAEC_RS10115 PF04055 Radical SAM superfamily AFAEC_RS10115 PF00919 Uncharacterized protein family UPF0004 AFAEC_RS10125 PF08529 NusA N-terminal domain AFAEC_RS10125 PF13184 NusA-like KH domain AFAEC_RS10130 PF01406 tRNA synthetases class I (C) catalytic domain AFAEC_RS10130 PF09190 DALR domain AFAEC_RS10140 PF01084 Ribosomal protein S18 AFAEC_RS10145 PF00436 Single-strand binding protein family AFAEC_RS10150 PF01250 Ribosomal protein S6 AFAEC_RS10165 PF00773 RNB domain AFAEC_RS10170 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AFAEC_RS10170 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFAEC_RS10185 PF08245 Mur ligase middle domain AFAEC_RS10185 PF02875 Mur ligase family, glutamate ligase domain AFAEC_RS10185 PF01225 Mur ligase family, catalytic domain AFAEC_RS10200 PF01702 Queuine tRNA-ribosyltransferase AFAEC_RS10205 PF02686 Glu-tRNAGln amidotransferase C subunit AFAEC_RS10210 PF03960 ArsC family AFAEC_RS10215 PF01474 Class-II DAHP synthetase family AFAEC_RS10220 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFAEC_RS10235 PF03652 Holliday junction resolvase AFAEC_RS10245 PF01648 4'-phosphopantetheinyl transferase superfamily AFAEC_RS10250 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS10255 PF02569 Pantoate-beta-alanine ligase AFAEC_RS10265 PF00919 Uncharacterized protein family UPF0004 AFAEC_RS10265 PF18693 TRAM domain AFAEC_RS10265 PF04055 Radical SAM superfamily AFAEC_RS10270 PF01171 PP-loop family AFAEC_RS10280 PF00543 Nitrogen regulatory protein P-II AFAEC_RS10285 PF00909 Ammonium Transporter Family AFAEC_RS10295 PF01966 HD domain AFAEC_RS10295 PF08335 GlnD PII-uridylyltransferase AFAEC_RS10300 PF01553 Acyltransferase AFAEC_RS10300 PF00501 AMP-binding enzyme AFAEC_RS10305 PF00375 Sodium:dicarboxylate symporter family AFAEC_RS10320 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AFAEC_RS10325 PF02040 Arsenical pump membrane protein AFAEC_RS10335 PF02779 Transketolase, pyrimidine binding domain AFAEC_RS10335 PF00456 Transketolase, thiamine diphosphate binding domain AFAEC_RS10335 PF02780 Transketolase, C-terminal domain AFAEC_RS10345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS10345 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS10345 PF00989 PAS fold AFAEC_RS10355 PF13533 Biotin-lipoyl like AFAEC_RS10360 PF00664 ABC transporter transmembrane region AFAEC_RS10360 PF00005 ABC transporter AFAEC_RS10360 PF03412 Peptidase C39 family AFAEC_RS10370 PF00072 Response regulator receiver domain AFAEC_RS10370 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS10375 PF08447 PAS fold AFAEC_RS10375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS10375 PF08448 PAS fold AFAEC_RS10385 PF00672 HAMP domain AFAEC_RS10385 PF02203 Tar ligand binding domain homologue AFAEC_RS10385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFAEC_RS10405 PF00364 Biotin-requiring enzyme AFAEC_RS10440 PF05690 Thiazole biosynthesis protein ThiG AFAEC_RS10445 PF03091 CutA1 divalent ion tolerance protein AFAEC_RS10450 PF03853 YjeF-related protein N-terminus AFAEC_RS10450 PF01256 Carbohydrate kinase AFAEC_RS10460 PF00814 Glycoprotease family AFAEC_RS10475 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AFAEC_RS10475 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFAEC_RS10475 PF13288 DXP reductoisomerase C-terminal domain AFAEC_RS10510 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFAEC_RS10510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFAEC_RS10510 PF03129 Anticodon binding domain AFAEC_RS10515 PF00707 Translation initiation factor IF-3, C-terminal domain AFAEC_RS10515 PF05198 Translation initiation factor IF-3, N-terminal domain AFAEC_RS10520 PF01632 Ribosomal protein L35 AFAEC_RS10525 PF00453 Ribosomal protein L20 AFAEC_RS10545 PF12804 MobA-like NTP transferase domain AFAEC_RS10550 PF00330 Aconitase family (aconitate hydratase) AFAEC_RS10555 PF01252 Signal peptidase (SPase) II AFAEC_RS10560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFAEC_RS10560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFAEC_RS10560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFAEC_RS10560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFAEC_RS10565 PF01649 Ribosomal protein S20 AFAEC_RS10570 PF03462 PCRF domain AFAEC_RS10570 PF00472 RF-1 domain AFAEC_RS10575 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFAEC_RS10575 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFAEC_RS10580 PF17954 Quercetinase C-terminal cupin domain AFAEC_RS10580 PF02678 Pirin AFAEC_RS10605 PF00266 Aminotransferase class-V AFAEC_RS10610 PF13393 Histidyl-tRNA synthetase AFAEC_RS10615 PF00709 Adenylosuccinate synthetase AFAEC_RS10625 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFAEC_RS10625 PF00117 Glutamine amidotransferase class-I AFAEC_RS10635 PF00768 D-alanyl-D-alanine carboxypeptidase AFAEC_RS10635 PF07943 Penicillin-binding protein 5, C-terminal domain AFAEC_RS10640 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AFAEC_RS10640 PF01266 FAD dependent oxidoreductase AFAEC_RS10650 PF02664 S-Ribosylhomocysteinase (LuxS) AFAEC_RS10655 PF02405 Permease MlaE AFAEC_RS10660 PF09383 NIL domain AFAEC_RS10660 PF00005 ABC transporter AFAEC_RS10680 PF13419 Haloacid dehalogenase-like hydrolase AFAEC_RS10685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFAEC_RS10690 PF02581 Thiamine monophosphate synthase AFAEC_RS10690 PF08543 Phosphomethylpyrimidine kinase AFAEC_RS10695 PF02110 Hydroxyethylthiazole kinase family AFAEC_RS10700 PF03070 TENA/THI-4/PQQC family AFAEC_RS10705 PF00380 Ribosomal protein S9/S16 AFAEC_RS10710 PF00572 Ribosomal protein L13 AFAEC_RS10715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS10715 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS10720 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS10720 PF00072 Response regulator receiver domain AFAEC_RS10730 PF01895 PhoU domain AFAEC_RS10735 PF00005 ABC transporter AFAEC_RS10740 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS10745 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS10750 PF12849 PBP superfamily domain AFAEC_RS10755 PF03447 Homoserine dehydrogenase, NAD binding domain AFAEC_RS10755 PF00742 Homoserine dehydrogenase AFAEC_RS10755 PF01842 ACT domain AFAEC_RS10760 PF00155 Aminotransferase class I and II AFAEC_RS10770 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFAEC_RS10770 PF00588 SpoU rRNA Methylase family AFAEC_RS10775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFAEC_RS10780 PF01197 Ribosomal protein L31 AFAEC_RS10795 PF01040 UbiA prenyltransferase family AFAEC_RS10845 PF00437 Type II/IV secretion system protein AFAEC_RS10880 PF01121 Dephospho-CoA kinase AFAEC_RS10885 PF00586 AIR synthase related protein, N-terminal domain AFAEC_RS10885 PF02769 AIR synthase related protein, C-terminal domain AFAEC_RS10890 PF02310 B12 binding domain AFAEC_RS10890 PF02607 B12 binding domain AFAEC_RS10890 PF02965 Vitamin B12 dependent methionine synthase, activation domain AFAEC_RS10890 PF02574 Homocysteine S-methyltransferase AFAEC_RS10890 PF00809 Pterin binding enzyme AFAEC_RS10905 PF01063 Amino-transferase class IV AFAEC_RS10915 PF01502 Phosphoribosyl-AMP cyclohydrolase AFAEC_RS10915 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFAEC_RS10925 PF01883 Iron-sulfur cluster assembly protein AFAEC_RS10925 PF10609 NUBPL iron-transfer P-loop NTPase AFAEC_RS10945 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFAEC_RS10945 PF02542 YgbB family AFAEC_RS10950 PF00072 Response regulator receiver domain AFAEC_RS10950 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS10955 PF04608 Phosphatidylglycerophosphatase A AFAEC_RS10960 PF04264 YceI-like domain AFAEC_RS10965 PF00873 AcrB/AcrD/AcrF family AFAEC_RS10985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS10990 PF00072 Response regulator receiver domain AFAEC_RS10990 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS10995 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AFAEC_RS11000 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFAEC_RS11005 PF04055 Radical SAM superfamily AFAEC_RS11020 PF00977 Histidine biosynthesis protein AFAEC_RS11025 PF00398 Ribosomal RNA adenine dimethylase AFAEC_RS11030 PF17770 Ribonuclease J C-terminal domain AFAEC_RS11030 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFAEC_RS11030 PF00753 Metallo-beta-lactamase superfamily AFAEC_RS11035 PF01380 SIS domain AFAEC_RS11035 PF00571 CBS domain AFAEC_RS11040 PF00849 RNA pseudouridylate synthase AFAEC_RS11040 PF01479 S4 domain AFAEC_RS11045 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFAEC_RS11045 PF12002 MgsA AAA+ ATPase C terminal AFAEC_RS11045 PF01661 Macro domain AFAEC_RS11045 PF16193 AAA C-terminal domain AFAEC_RS11050 PF03653 Uncharacterised protein family (UPF0093) AFAEC_RS11055 PF13638 PIN domain AFAEC_RS11055 PF02562 PhoH-like protein AFAEC_RS11065 PF00733 Asparagine synthase AFAEC_RS11065 PF13537 Glutamine amidotransferase domain AFAEC_RS11075 PF01384 Phosphate transporter family AFAEC_RS11080 PF00270 DEAD/DEAH box helicase AFAEC_RS11080 PF00271 Helicase conserved C-terminal domain AFAEC_RS11085 PF02785 Biotin carboxylase C-terminal domain AFAEC_RS11085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFAEC_RS11085 PF00289 Biotin carboxylase, N-terminal domain AFAEC_RS11090 PF00364 Biotin-requiring enzyme AFAEC_RS11095 PF01872 RibD C-terminal domain AFAEC_RS11095 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFAEC_RS11100 PF02754 Cysteine-rich domain AFAEC_RS11105 PF13183 4Fe-4S dicluster domain AFAEC_RS11105 PF02589 LUD domain AFAEC_RS11105 PF11870 Domain of unknown function (DUF3390) AFAEC_RS11110 PF02589 LUD domain AFAEC_RS11115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS11115 PF00512 His Kinase A (phospho-acceptor) domain AFAEC_RS11115 PF00989 PAS fold AFAEC_RS11120 PF00486 Transcriptional regulatory protein, C terminal AFAEC_RS11120 PF00072 Response regulator receiver domain AFAEC_RS11125 PF02652 L-lactate permease AFAEC_RS11130 PF02913 FAD linked oxidases, C-terminal domain AFAEC_RS11130 PF01565 FAD binding domain AFAEC_RS11140 PF02637 GatB domain AFAEC_RS11140 PF02934 GatB/GatE catalytic domain AFAEC_RS11145 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFAEC_RS11145 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFAEC_RS11150 PF01638 HxlR-like helix-turn-helix AFAEC_RS11155 PF00107 Zinc-binding dehydrogenase AFAEC_RS11155 PF08240 Alcohol dehydrogenase GroES-like domain AFAEC_RS11170 PF00268 Ribonucleotide reductase, small chain AFAEC_RS11175 PF00317 Ribonucleotide reductase, all-alpha domain AFAEC_RS11175 PF02867 Ribonucleotide reductase, barrel domain AFAEC_RS11175 PF03477 ATP cone domain AFAEC_RS11180 PF10397 Adenylosuccinate lyase C-terminus AFAEC_RS11180 PF00206 Lyase AFAEC_RS11185 PF00849 RNA pseudouridylate synthase AFAEC_RS11205 PF03458 UPF0126 domain AFAEC_RS11210 PF02511 Thymidylate synthase complementing protein AFAEC_RS11215 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS11225 PF00593 TonB dependent receptor AFAEC_RS11225 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS11230 PF00005 ABC transporter AFAEC_RS11235 PF01032 FecCD transport family AFAEC_RS11240 PF01497 Periplasmic binding protein AFAEC_RS11245 PF01243 Pyridoxamine 5'-phosphate oxidase AFAEC_RS11260 PF06228 Haem utilisation ChuX/HutX AFAEC_RS11265 PF04143 Sulphur transport AFAEC_RS11270 PF01206 Sulfurtransferase TusA AFAEC_RS11310 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS11310 PF00593 TonB dependent receptor AFAEC_RS11310 PF07660 Secretin and TonB N terminus short domain AFAEC_RS11335 PF03144 Elongation factor Tu domain 2 AFAEC_RS11335 PF00009 Elongation factor Tu GTP binding domain AFAEC_RS11335 PF00679 Elongation factor G C-terminus AFAEC_RS11345 PF09084 NMT1/THI5 like AFAEC_RS11350 PF00296 Luciferase-like monooxygenase AFAEC_RS11355 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS11360 PF00005 ABC transporter AFAEC_RS11370 PF09084 NMT1/THI5 like AFAEC_RS11375 PF00296 Luciferase-like monooxygenase AFAEC_RS11385 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS11390 PF00005 ABC transporter AFAEC_RS11410 PF00291 Pyridoxal-phosphate dependent enzyme AFAEC_RS11420 PF02597 ThiS family AFAEC_RS11425 PF00581 Rhodanese-like domain AFAEC_RS11425 PF00899 ThiF family AFAEC_RS11435 PF00266 Aminotransferase class-V AFAEC_RS11445 PF00563 EAL domain AFAEC_RS11445 PF00990 Diguanylate cyclase, GGDEF domain AFAEC_RS11445 PF08495 FIST N domain AFAEC_RS11445 PF10442 FIST C domain AFAEC_RS11450 PF00132 Bacterial transferase hexapeptide (six repeats) AFAEC_RS11450 PF06426 Serine acetyltransferase, N-terminal AFAEC_RS11455 PF00291 Pyridoxal-phosphate dependent enzyme AFAEC_RS11470 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS11475 PF00528 Binding-protein-dependent transport system inner membrane component AFAEC_RS11480 PF00005 ABC transporter AFAEC_RS11480 PF12857 TOBE-like domain AFAEC_RS11480 PF17850 CysA C-terminal regulatory domain AFAEC_RS11490 PF00149 Calcineurin-like phosphoesterase AFAEC_RS11505 PF00291 Pyridoxal-phosphate dependent enzyme AFAEC_RS11510 PF02911 Formyl transferase, C-terminal domain AFAEC_RS11510 PF00551 Formyl transferase AFAEC_RS11515 PF02075 Crossover junction endodeoxyribonuclease RuvC AFAEC_RS11525 PF00589 Phage integrase family AFAEC_RS11525 PF18644 Phage integrase SAM-like domain AFAEC_RS11530 PF13333 Integrase core domain AFAEC_RS11530 PF13276 HTH-like domain AFAEC_RS11530 PF00665 Integrase core domain AFAEC_RS11545 PF00589 Phage integrase family AFAEC_RS11545 PF02899 Phage integrase, N-terminal SAM-like domain AFAEC_RS11550 PF00239 Resolvase, N terminal domain AFAEC_RS11550 PF02796 Helix-turn-helix domain of resolvase AFAEC_RS11570 PF00925 GTP cyclohydrolase II AFAEC_RS11580 PF01242 6-pyruvoyl tetrahydropterin synthase AFAEC_RS11590 PF00950 ABC 3 transport family AFAEC_RS11595 PF00005 ABC transporter AFAEC_RS11600 PF01297 Zinc-uptake complex component A periplasmic AFAEC_RS11605 PF13700 Domain of unknown function (DUF4158) AFAEC_RS11605 PF01526 Tn3 transposase DDE domain AFAEC_RS11610 PF00589 Phage integrase family AFAEC_RS11610 PF02899 Phage integrase, N-terminal SAM-like domain AFAEC_RS11675 PF02796 Helix-turn-helix domain of resolvase AFAEC_RS11675 PF00239 Resolvase, N terminal domain AFAEC_RS11685 PF01048 Phosphorylase superfamily AFAEC_RS11760 PF12282 Signal transduction histidine kinase AFAEC_RS11760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFAEC_RS11760 PF07568 Histidine kinase AFAEC_RS11775 PF01966 HD domain AFAEC_RS11780 PF13091 PLD-like domain AFAEC_RS11780 PF13087 AAA domain AFAEC_RS11795 PF13195 Protein of unknown function (DUF4011) AFAEC_RS11795 PF13087 AAA domain AFAEC_RS11795 PF13086 AAA domain AFAEC_RS11815 PF13476 AAA domain AFAEC_RS11820 PF12320 Type 5 capsule protein repressor C-terminal domain AFAEC_RS11820 PF00149 Calcineurin-like phosphoesterase AFAEC_RS11825 PF04607 Region found in RelA / SpoT proteins AFAEC_RS11825 PF02824 TGS domain AFAEC_RS11825 PF13291 ACT domain AFAEC_RS11830 PF13614 AAA domain AFAEC_RS11835 PF02195 ParB-like nuclease domain AFAEC_RS11845 PF03796 DnaB-like helicase C terminal domain AFAEC_RS11845 PF00772 DnaB-like helicase N terminal domain AFAEC_RS11855 PF07715 TonB-dependent Receptor Plug Domain AFAEC_RS11855 PF00593 TonB dependent receptor AFAEC_RS11875 PF10417 C-terminal domain of 1-Cys peroxiredoxin AFAEC_RS11875 PF00578 AhpC/TSA family AFAEC_RS11880 PF00085 Thioredoxin AFAEC_RS12055 PF00271 Helicase conserved C-terminal domain AFAEC_RS12055 PF04851 Type III restriction enzyme, res subunit AFAEC_RS12055 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) AFAEC_RS12055 PF08463 EcoEI R protein C-terminal AFAEC_RS12060 PF12161 HsdM N-terminal domain AFAEC_RS12060 PF02384 N-6 DNA Methylase AFAEC_RS12175 PF00589 Phage integrase family AFAEC_RS12175 PF02899 Phage integrase, N-terminal SAM-like domain