locus-tag class description ALIDE_RS00005 PF00308 Bacterial dnaA protein ALIDE_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix ALIDE_RS00005 PF11638 DnaA N-terminal domain ALIDE_RS00010 PF02767 DNA polymerase III beta subunit, central domain ALIDE_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ALIDE_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ALIDE_RS00015 PF18053 DNA gyrase B subunit insert domain ALIDE_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS00015 PF00204 DNA gyrase B ALIDE_RS00015 PF01751 Toprim domain ALIDE_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus ALIDE_RS00025 PF02515 CoA-transferase family III ALIDE_RS00030 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS00035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS00035 PF03466 LysR substrate binding domain ALIDE_RS00040 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00050 PF00364 Biotin-requiring enzyme ALIDE_RS00050 PF00289 Biotin carboxylase, N-terminal domain ALIDE_RS00050 PF02785 Biotin carboxylase C-terminal domain ALIDE_RS00050 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS00050 PF18140 Propionyl-coenzyme A carboxylase BT domain ALIDE_RS00055 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00060 PF01039 Carboxyl transferase domain ALIDE_RS00065 PF00708 Acylphosphatase ALIDE_RS00075 PF01842 ACT domain ALIDE_RS00075 PF03447 Homoserine dehydrogenase, NAD binding domain ALIDE_RS00075 PF00742 Homoserine dehydrogenase ALIDE_RS00080 PF13307 Helicase C-terminal domain ALIDE_RS00080 PF06733 DEAD_2 ALIDE_RS00090 PF00877 NlpC/P60 family ALIDE_RS00095 PF00793 DAHP synthetase I family ALIDE_RS00100 PF00563 EAL domain ALIDE_RS00100 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS00100 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS00110 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00115 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00120 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00125 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00130 PF13380 CoA binding domain ALIDE_RS00130 PF13607 Succinyl-CoA ligase like flavodoxin domain ALIDE_RS00135 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS00155 PF04381 Putative exonuclease, RdgC ALIDE_RS00160 PF07670 Nucleoside recognition ALIDE_RS00175 PF09278 MerR, DNA binding ALIDE_RS00175 PF00376 MerR family regulatory protein ALIDE_RS00185 PF00403 Heavy-metal-associated domain ALIDE_RS00190 PF02203 Tar ligand binding domain homologue ALIDE_RS00190 PF00672 HAMP domain ALIDE_RS00190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS00195 PF00873 AcrB/AcrD/AcrF family ALIDE_RS00200 PF00529 HlyD membrane-fusion protein of T1SS ALIDE_RS00200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALIDE_RS00210 PF00072 Response regulator receiver domain ALIDE_RS00210 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS00215 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS00215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS00220 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALIDE_RS00225 PF02798 Glutathione S-transferase, N-terminal domain ALIDE_RS00225 PF00043 Glutathione S-transferase, C-terminal domain ALIDE_RS00230 PF03692 Putative zinc- or iron-chelating domain ALIDE_RS00235 PF03358 NADPH-dependent FMN reductase ALIDE_RS00240 PF13932 GidA associated domain ALIDE_RS00240 PF01134 Glucose inhibited division protein A ALIDE_RS00250 PF02527 rRNA small subunit methyltransferase G ALIDE_RS00255 PF01810 LysE type translocator ALIDE_RS00260 PF13614 AAA domain ALIDE_RS00270 PF02195 ParB-like nuclease domain ALIDE_RS00270 PF17762 HTH domain found in ParB protein ALIDE_RS00295 PF00924 Mechanosensitive ion channel ALIDE_RS00295 PF05552 Conserved TM helix ALIDE_RS00300 PF01565 FAD binding domain ALIDE_RS00300 PF02913 FAD linked oxidases, C-terminal domain ALIDE_RS00315 PF04233 Phage Mu protein F like protein ALIDE_RS00390 PF01923 Cobalamin adenosyltransferase ALIDE_RS00395 PF03061 Thioesterase superfamily ALIDE_RS00400 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ALIDE_RS00400 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ALIDE_RS00410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS00410 PF03466 LysR substrate binding domain ALIDE_RS00415 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00425 PF00106 short chain dehydrogenase ALIDE_RS00435 PF00860 Permease family ALIDE_RS00445 PF01494 FAD binding domain ALIDE_RS00450 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS00450 PF00501 AMP-binding enzyme ALIDE_RS00455 PF03466 LysR substrate binding domain ALIDE_RS00455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS00460 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00465 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00470 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00475 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS00480 PF01066 CDP-alcohol phosphatidyltransferase ALIDE_RS00485 PF00593 TonB dependent receptor ALIDE_RS00485 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS00500 PF05209 Septum formation inhibitor MinC, N-terminal domain ALIDE_RS00500 PF03775 Septum formation inhibitor MinC, C-terminal domain ALIDE_RS00505 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALIDE_RS00510 PF03776 Septum formation topological specificity factor MinE ALIDE_RS00515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS00515 PF03466 LysR substrate binding domain ALIDE_RS00520 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00525 PF13378 Enolase C-terminal domain-like ALIDE_RS00525 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALIDE_RS00530 PF01613 Flavin reductase like domain ALIDE_RS00535 PF00561 alpha/beta hydrolase fold ALIDE_RS00555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS00555 PF03466 LysR substrate binding domain ALIDE_RS00565 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain ALIDE_RS00565 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain ALIDE_RS00570 PF13291 ACT domain ALIDE_RS00570 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS00575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00575 PF18158 Adaptive response protein AidB N-terminal domain ALIDE_RS00575 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00580 PF00689 Cation transporting ATPase, C-terminus ALIDE_RS00580 PF00690 Cation transporter/ATPase, N-terminus ALIDE_RS00585 PF02574 Homocysteine S-methyltransferase ALIDE_RS00585 PF02607 B12 binding domain ALIDE_RS00585 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALIDE_RS00585 PF00809 Pterin binding enzyme ALIDE_RS00585 PF02310 B12 binding domain ALIDE_RS00590 PF03466 LysR substrate binding domain ALIDE_RS00590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS00595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00595 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00605 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00610 PF00270 DEAD/DEAH box helicase ALIDE_RS00610 PF00271 Helicase conserved C-terminal domain ALIDE_RS00610 PF00570 HRDC domain ALIDE_RS00610 PF16124 RecQ zinc-binding ALIDE_RS00610 PF09382 RQC domain ALIDE_RS00630 PF00563 EAL domain ALIDE_RS00630 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS00630 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS00640 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALIDE_RS00645 PF00158 Sigma-54 interaction domain ALIDE_RS00645 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS00655 PF03313 Serine dehydratase alpha chain ALIDE_RS00655 PF03315 Serine dehydratase beta chain ALIDE_RS00660 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00665 PF00501 AMP-binding enzyme ALIDE_RS00665 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS00670 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00680 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00685 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00690 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00695 PF00501 AMP-binding enzyme ALIDE_RS00695 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS00700 PF02803 Thiolase, C-terminal domain ALIDE_RS00700 PF00108 Thiolase, N-terminal domain ALIDE_RS00705 PF00106 short chain dehydrogenase ALIDE_RS00710 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00720 PF09339 IclR helix-turn-helix domain ALIDE_RS00725 PF02515 CoA-transferase family III ALIDE_RS00740 PF02803 Thiolase, C-terminal domain ALIDE_RS00740 PF00108 Thiolase, N-terminal domain ALIDE_RS00745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00745 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00750 PF00501 AMP-binding enzyme ALIDE_RS00750 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS00755 PF01575 MaoC like domain ALIDE_RS00760 PF00106 short chain dehydrogenase ALIDE_RS00765 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00795 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00805 PF02515 CoA-transferase family III ALIDE_RS00810 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00820 PF00106 short chain dehydrogenase ALIDE_RS00825 PF01575 MaoC like domain ALIDE_RS00830 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS00835 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ALIDE_RS00835 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ALIDE_RS00840 PF02803 Thiolase, C-terminal domain ALIDE_RS00840 PF00108 Thiolase, N-terminal domain ALIDE_RS00850 PF02515 CoA-transferase family III ALIDE_RS00855 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS00855 PF00107 Zinc-binding dehydrogenase ALIDE_RS00860 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS00865 PF03466 LysR substrate binding domain ALIDE_RS00870 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00875 PF07687 Peptidase dimerisation domain ALIDE_RS00875 PF01546 Peptidase family M20/M25/M40 ALIDE_RS00880 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00885 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS00885 PF00501 AMP-binding enzyme ALIDE_RS00890 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00895 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00900 PF01546 Peptidase family M20/M25/M40 ALIDE_RS00900 PF07687 Peptidase dimerisation domain ALIDE_RS00915 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00915 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00915 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00930 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00940 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00945 PF01039 Carboxyl transferase domain ALIDE_RS00950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS00950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS00950 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS00955 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS00960 PF00364 Biotin-requiring enzyme ALIDE_RS00960 PF02785 Biotin carboxylase C-terminal domain ALIDE_RS00960 PF00289 Biotin carboxylase, N-terminal domain ALIDE_RS00960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS00970 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS00975 PF02515 CoA-transferase family III ALIDE_RS00980 PF03466 LysR substrate binding domain ALIDE_RS00980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS00985 PF02515 CoA-transferase family III ALIDE_RS00990 PF03466 LysR substrate binding domain ALIDE_RS00990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS00995 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01000 PF02515 CoA-transferase family III ALIDE_RS01005 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALIDE_RS01005 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALIDE_RS01020 PF06977 SdiA-regulated ALIDE_RS01025 PF02310 B12 binding domain ALIDE_RS01025 PF02607 B12 binding domain ALIDE_RS01025 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALIDE_RS01025 PF02574 Homocysteine S-methyltransferase ALIDE_RS01025 PF00809 Pterin binding enzyme ALIDE_RS01030 PF18541 RuvC endonuclease subdomain 3 ALIDE_RS01030 PF13395 HNH endonuclease ALIDE_RS01030 PF18470 Cas9 alpha-helical lobe domain ALIDE_RS01040 PF09827 CRISPR associated protein Cas2 ALIDE_RS01050 PF03743 Bacterial conjugation TrbI-like protein ALIDE_RS01055 PF03524 Conjugal transfer protein ALIDE_RS01065 PF04610 TrbL/VirB6 plasmid conjugal transfer protein ALIDE_RS01075 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ALIDE_RS01085 PF04956 TrbC/VIRB2 family ALIDE_RS01090 PF00437 Type II/IV secretion system protein ALIDE_RS01100 PF02534 Type IV secretory system Conjugative DNA transfer ALIDE_RS01110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS01110 PF03466 LysR substrate binding domain ALIDE_RS01115 PF00873 AcrB/AcrD/AcrF family ALIDE_RS01120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALIDE_RS01120 PF00529 HlyD membrane-fusion protein of T1SS ALIDE_RS01125 PF02321 Outer membrane efflux protein ALIDE_RS01140 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS01140 PF00072 Response regulator receiver domain ALIDE_RS01145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS01145 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS01145 PF00672 HAMP domain ALIDE_RS01155 PF00403 Heavy-metal-associated domain ALIDE_RS01160 PF13411 MerR HTH family regulatory protein ALIDE_RS01170 PF10502 Signal peptidase, peptidase S26 ALIDE_RS01185 PF13614 AAA domain ALIDE_RS01210 PF01381 Helix-turn-helix ALIDE_RS01215 PF05284 Protein of unknown function (DUF736) ALIDE_RS01235 PF02195 ParB-like nuclease domain ALIDE_RS01240 PF06067 Domain of unknown function (DUF932) ALIDE_RS01260 PF05973 Phage derived protein Gp49-like (DUF891) ALIDE_RS01270 PF01202 Shikimate kinase ALIDE_RS01285 PF00175 Oxidoreductase NAD-binding domain ALIDE_RS01285 PF00970 Oxidoreductase FAD-binding domain ALIDE_RS01290 PF13458 Periplasmic binding protein ALIDE_RS01295 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS01300 PF00005 ABC transporter ALIDE_RS01310 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS01310 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS01310 PF00593 TonB dependent receptor ALIDE_RS01310 PF00593 TonB dependent receptor ALIDE_RS01325 PF13335 Magnesium chelatase, subunit ChlI C-terminal ALIDE_RS01325 PF01078 Magnesium chelatase, subunit ChlI ALIDE_RS01335 PF00543 Nitrogen regulatory protein P-II ALIDE_RS01340 PF00909 Ammonium Transporter Family ALIDE_RS01345 PF03466 LysR substrate binding domain ALIDE_RS01345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS01350 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALIDE_RS01350 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALIDE_RS01355 PF00171 Aldehyde dehydrogenase family ALIDE_RS01360 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01380 PF12697 Alpha/beta hydrolase family ALIDE_RS01390 PF05145 Transition state regulatory protein AbrB ALIDE_RS01395 PF03972 MmgE/PrpD family ALIDE_RS01400 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS01400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS01400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS01405 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01410 PF13380 CoA binding domain ALIDE_RS01410 PF13607 Succinyl-CoA ligase like flavodoxin domain ALIDE_RS01415 PF01565 FAD binding domain ALIDE_RS01425 PF13183 4Fe-4S dicluster domain ALIDE_RS01425 PF02754 Cysteine-rich domain ALIDE_RS01440 PF07690 Major Facilitator Superfamily ALIDE_RS01445 PF01168 Alanine racemase, N-terminal domain ALIDE_RS01445 PF00842 Alanine racemase, C-terminal domain ALIDE_RS01450 PF00034 Cytochrome c ALIDE_RS01450 PF03150 Di-haem cytochrome c peroxidase ALIDE_RS01455 PF14497 Glutathione S-transferase, C-terminal domain ALIDE_RS01455 PF02798 Glutathione S-transferase, N-terminal domain ALIDE_RS01460 PF18073 Rubredoxin metal binding domain ALIDE_RS01470 PF01425 Amidase ALIDE_RS01480 PF01063 Amino-transferase class IV ALIDE_RS01500 PF00535 Glycosyl transferase family 2 ALIDE_RS01500 PF01501 Glycosyl transferase family 8 ALIDE_RS01510 PF03060 Nitronate monooxygenase ALIDE_RS01515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS01515 PF03466 LysR substrate binding domain ALIDE_RS01520 PF06779 Uncharacterised MFS-type transporter YbfB ALIDE_RS01525 PF03475 3-alpha domain ALIDE_RS01525 PF03473 MOSC domain ALIDE_RS01545 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01550 PF03466 LysR substrate binding domain ALIDE_RS01550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS01555 PF02515 CoA-transferase family III ALIDE_RS01560 PF00672 HAMP domain ALIDE_RS01560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS01560 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS01565 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS01565 PF00072 Response regulator receiver domain ALIDE_RS01570 PF07690 Major Facilitator Superfamily ALIDE_RS01585 PF01435 Peptidase family M48 ALIDE_RS01605 PF06505 Activator of aromatic catabolism ALIDE_RS01605 PF02830 V4R domain ALIDE_RS01605 PF00158 Sigma-54 interaction domain ALIDE_RS01605 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS01610 PF06099 Phenol hydroxylase subunit ALIDE_RS01615 PF02332 Methane/Phenol/Toluene Hydroxylase ALIDE_RS01620 PF02406 MmoB/DmpM family ALIDE_RS01625 PF04945 YHS domain ALIDE_RS01625 PF02332 Methane/Phenol/Toluene Hydroxylase ALIDE_RS01630 PF01494 FAD binding domain ALIDE_RS01635 PF00970 Oxidoreductase FAD-binding domain ALIDE_RS01635 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS01635 PF00175 Oxidoreductase NAD-binding domain ALIDE_RS01640 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS01645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALIDE_RS01650 PF03928 Haem-degrading ALIDE_RS01665 PF00171 Aldehyde dehydrogenase family ALIDE_RS01670 PF00561 alpha/beta hydrolase fold ALIDE_RS01680 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation ALIDE_RS01680 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALIDE_RS01685 PF07836 DmpG-like communication domain ALIDE_RS01685 PF00682 HMGL-like ALIDE_RS01695 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01700 PF01361 Tautomerase enzyme ALIDE_RS01705 PF00753 Metallo-beta-lactamase superfamily ALIDE_RS01710 PF01614 Bacterial transcriptional regulator ALIDE_RS01710 PF09339 IclR helix-turn-helix domain ALIDE_RS01715 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01720 PF04909 Amidohydrolase ALIDE_RS01725 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01730 PF03737 Aldolase/RraA ALIDE_RS01735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALIDE_RS01735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALIDE_RS01740 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01745 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01750 PF04909 Amidohydrolase ALIDE_RS01755 PF08450 SMP-30/Gluconolactonase/LRE-like region ALIDE_RS01760 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01765 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALIDE_RS01765 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALIDE_RS01770 PF00171 Aldehyde dehydrogenase family ALIDE_RS01775 PF01614 Bacterial transcriptional regulator ALIDE_RS01775 PF09339 IclR helix-turn-helix domain ALIDE_RS01795 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS01805 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS01805 PF00005 ABC transporter ALIDE_RS01810 PF00005 ABC transporter ALIDE_RS01820 PF07729 FCD domain ALIDE_RS01820 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS01825 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS01825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS01825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS01835 PF01636 Phosphotransferase enzyme family ALIDE_RS01840 PF03372 Endonuclease/Exonuclease/phosphatase family ALIDE_RS01845 PF00156 Phosphoribosyl transferase domain ALIDE_RS01855 PF02637 GatB domain ALIDE_RS01855 PF02934 GatB/GatE catalytic domain ALIDE_RS01860 PF01425 Amidase ALIDE_RS01865 PF02686 Glu-tRNAGln amidotransferase C subunit ALIDE_RS01880 PF04093 rod shape-determining protein MreD ALIDE_RS01885 PF00905 Penicillin binding protein transpeptidase domain ALIDE_RS01885 PF03717 Penicillin-binding Protein dimerisation domain ALIDE_RS01890 PF00491 Arginase family ALIDE_RS01895 PF01925 Sulfite exporter TauE/SafE ALIDE_RS01900 PF05199 GMC oxidoreductase ALIDE_RS01900 PF00732 GMC oxidoreductase ALIDE_RS01905 PF02405 Permease MlaE ALIDE_RS01910 PF00005 ABC transporter ALIDE_RS01915 PF02470 MlaD protein ALIDE_RS01925 PF03466 LysR substrate binding domain ALIDE_RS01925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS01930 PF00330 Aconitase family (aconitate hydratase) ALIDE_RS01935 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS01940 PF03737 Aldolase/RraA ALIDE_RS01945 PF01914 MarC family integral membrane protein ALIDE_RS01950 PF01738 Dienelactone hydrolase family ALIDE_RS01955 PF07690 Major Facilitator Superfamily ALIDE_RS01960 PF13533 Biotin-lipoyl like ALIDE_RS01965 PF02321 Outer membrane efflux protein ALIDE_RS01975 PF01544 CorA-like Mg2+ transporter protein ALIDE_RS01980 PF00490 Delta-aminolevulinic acid dehydratase ALIDE_RS01990 PF03653 Uncharacterised protein family (UPF0093) ALIDE_RS02005 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ALIDE_RS02010 PF00768 D-alanyl-D-alanine carboxypeptidase ALIDE_RS02010 PF07943 Penicillin-binding protein 5, C-terminal domain ALIDE_RS02015 PF00164 Ribosomal protein S12/S23 ALIDE_RS02020 PF00177 Ribosomal protein S7p/S5e ALIDE_RS02025 PF14492 Elongation Factor G, domain II ALIDE_RS02025 PF03764 Elongation factor G, domain IV ALIDE_RS02025 PF00009 Elongation factor Tu GTP binding domain ALIDE_RS02025 PF03144 Elongation factor Tu domain 2 ALIDE_RS02025 PF00679 Elongation factor G C-terminus ALIDE_RS02030 PF03144 Elongation factor Tu domain 2 ALIDE_RS02030 PF00009 Elongation factor Tu GTP binding domain ALIDE_RS02030 PF03143 Elongation factor Tu C-terminal domain ALIDE_RS02035 PF00338 Ribosomal protein S10p/S20e ALIDE_RS02040 PF00297 Ribosomal protein L3 ALIDE_RS02045 PF00573 Ribosomal protein L4/L1 family ALIDE_RS02050 PF00276 Ribosomal protein L23 ALIDE_RS02055 PF03947 Ribosomal Proteins L2, C-terminal domain ALIDE_RS02055 PF00181 Ribosomal Proteins L2, RNA binding domain ALIDE_RS02060 PF00203 Ribosomal protein S19 ALIDE_RS02065 PF00237 Ribosomal protein L22p/L17e ALIDE_RS02070 PF00189 Ribosomal protein S3, C-terminal domain ALIDE_RS02070 PF07650 KH domain ALIDE_RS02075 PF00252 Ribosomal protein L16p/L10e ALIDE_RS02080 PF00831 Ribosomal L29 protein ALIDE_RS02085 PF00366 Ribosomal protein S17 ALIDE_RS02090 PF08534 Redoxin ALIDE_RS02090 PF00462 Glutaredoxin ALIDE_RS02095 PF00583 Acetyltransferase (GNAT) family ALIDE_RS02105 PF00578 AhpC/TSA family ALIDE_RS02120 PF00381 PTS HPr component phosphorylation site ALIDE_RS02125 PF05524 PEP-utilising enzyme, N-terminal ALIDE_RS02125 PF00391 PEP-utilising enzyme, mobile domain ALIDE_RS02125 PF02896 PEP-utilising enzyme, TIM barrel domain ALIDE_RS02130 PF04055 Radical SAM superfamily ALIDE_RS02130 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ALIDE_RS02135 PF03099 Biotin/lipoate A/B protein ligase family ALIDE_RS02140 PF04359 Protein of unknown function (DUF493) ALIDE_RS02150 PF00119 ATP synthase A chain ALIDE_RS02155 PF00137 ATP synthase subunit C ALIDE_RS02160 PF00430 ATP synthase B/B' CF(0) ALIDE_RS02165 PF00213 ATP synthase delta (OSCP) subunit ALIDE_RS02170 PF00306 ATP synthase alpha/beta chain, C terminal domain ALIDE_RS02170 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALIDE_RS02170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALIDE_RS02175 PF00231 ATP synthase ALIDE_RS02180 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALIDE_RS02180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALIDE_RS02185 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ALIDE_RS02200 PF03466 LysR substrate binding domain ALIDE_RS02200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS02230 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS02235 PF02321 Outer membrane efflux protein ALIDE_RS02240 PF00873 AcrB/AcrD/AcrF family ALIDE_RS02245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALIDE_RS02245 PF00529 HlyD membrane-fusion protein of T1SS ALIDE_RS02250 PF00440 Bacterial regulatory proteins, tetR family ALIDE_RS02250 PF08361 MAATS-type transcriptional repressor, C-terminal region ALIDE_RS02275 PF03143 Elongation factor Tu C-terminal domain ALIDE_RS02275 PF03144 Elongation factor Tu domain 2 ALIDE_RS02275 PF00009 Elongation factor Tu GTP binding domain ALIDE_RS02285 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ALIDE_RS02290 PF02357 Transcription termination factor nusG ALIDE_RS02290 PF00467 KOW motif ALIDE_RS02295 PF03946 Ribosomal protein L11, N-terminal domain ALIDE_RS02295 PF00298 Ribosomal protein L11, RNA binding domain ALIDE_RS02300 PF00687 Ribosomal protein L1p/L10e family ALIDE_RS02305 PF00466 Ribosomal protein L10 ALIDE_RS02310 PF00542 Ribosomal protein L7/L12 C-terminal domain ALIDE_RS02310 PF16320 Ribosomal protein L7/L12 dimerisation domain ALIDE_RS02315 PF10385 RNA polymerase beta subunit external 1 domain ALIDE_RS02315 PF04565 RNA polymerase Rpb2, domain 3 ALIDE_RS02315 PF04561 RNA polymerase Rpb2, domain 2 ALIDE_RS02315 PF04563 RNA polymerase beta subunit ALIDE_RS02315 PF04560 RNA polymerase Rpb2, domain 7 ALIDE_RS02315 PF00562 RNA polymerase Rpb2, domain 6 ALIDE_RS02320 PF00623 RNA polymerase Rpb1, domain 2 ALIDE_RS02320 PF04997 RNA polymerase Rpb1, domain 1 ALIDE_RS02320 PF05000 RNA polymerase Rpb1, domain 4 ALIDE_RS02320 PF04998 RNA polymerase Rpb1, domain 5 ALIDE_RS02320 PF04983 RNA polymerase Rpb1, domain 3 ALIDE_RS02330 PF01189 16S rRNA methyltransferase RsmB/F ALIDE_RS02330 PF01029 NusB family ALIDE_RS02340 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS02340 PF00672 HAMP domain ALIDE_RS02340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS02340 PF00989 PAS fold ALIDE_RS02345 PF00158 Sigma-54 interaction domain ALIDE_RS02345 PF00072 Response regulator receiver domain ALIDE_RS02345 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS02365 PF01381 Helix-turn-helix ALIDE_RS02370 PF06114 IrrE N-terminal-like domain ALIDE_RS02375 PF00665 Integrase core domain ALIDE_RS02380 PF01695 IstB-like ATP binding protein ALIDE_RS02400 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALIDE_RS02400 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALIDE_RS02400 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALIDE_RS02405 PF01370 NAD dependent epimerase/dehydratase family ALIDE_RS02410 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase ALIDE_RS02415 PF00535 Glycosyl transferase family 2 ALIDE_RS02425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALIDE_RS02430 PF02021 Uncharacterised protein family UPF0102 ALIDE_RS02435 PF13580 SIS domain ALIDE_RS02445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALIDE_RS02445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALIDE_RS02450 PF00437 Type II/IV secretion system protein ALIDE_RS02455 PF00027 Cyclic nucleotide-binding domain ALIDE_RS02455 PF13545 Crp-like helix-turn-helix domain ALIDE_RS02460 PF00437 Type II/IV secretion system protein ALIDE_RS02465 PF01168 Alanine racemase, N-terminal domain ALIDE_RS02480 PF04286 Protein of unknown function (DUF445) ALIDE_RS02485 PF01565 FAD binding domain ALIDE_RS02485 PF02913 FAD linked oxidases, C-terminal domain ALIDE_RS02490 PF03466 LysR substrate binding domain ALIDE_RS02490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS02495 PF00551 Formyl transferase ALIDE_RS02500 PF00563 EAL domain ALIDE_RS02500 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS02500 PF08447 PAS fold ALIDE_RS02500 PF08448 PAS fold ALIDE_RS02510 PF00317 Ribonucleotide reductase, all-alpha domain ALIDE_RS02510 PF03477 ATP cone domain ALIDE_RS02510 PF02867 Ribonucleotide reductase, barrel domain ALIDE_RS02515 PF07730 Histidine kinase ALIDE_RS02520 PF00072 Response regulator receiver domain ALIDE_RS02520 PF00196 Bacterial regulatory proteins, luxR family ALIDE_RS02525 PF07690 Major Facilitator Superfamily ALIDE_RS02530 PF07690 Major Facilitator Superfamily ALIDE_RS02535 PF14710 Respiratory nitrate reductase alpha N-terminal ALIDE_RS02535 PF01568 Molydopterin dinucleotide binding domain ALIDE_RS02535 PF00384 Molybdopterin oxidoreductase ALIDE_RS02540 PF14711 Respiratory nitrate reductase beta C-terminal ALIDE_RS02540 PF13247 4Fe-4S dicluster domain ALIDE_RS02545 PF02613 Nitrate reductase delta subunit ALIDE_RS02550 PF02665 Nitrate reductase gamma subunit ALIDE_RS02560 PF00484 Carbonic anhydrase ALIDE_RS02575 PF01814 Hemerythrin HHE cation binding domain ALIDE_RS02600 PF00384 Molybdopterin oxidoreductase ALIDE_RS02600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALIDE_RS02600 PF01568 Molydopterin dinucleotide binding domain ALIDE_RS02610 PF03328 HpcH/HpaI aldolase/citrate lyase family ALIDE_RS02615 PF02515 CoA-transferase family III ALIDE_RS02620 PF01575 MaoC like domain ALIDE_RS02625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS02625 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS02625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS02630 PF01575 MaoC like domain ALIDE_RS02640 PF03328 HpcH/HpaI aldolase/citrate lyase family ALIDE_RS02650 PF01546 Peptidase family M20/M25/M40 ALIDE_RS02650 PF07687 Peptidase dimerisation domain ALIDE_RS02665 PF03352 Methyladenine glycosylase ALIDE_RS02680 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS02685 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS02690 PF00501 AMP-binding enzyme ALIDE_RS02690 PF14535 AMP-binding enzyme C-terminal domain ALIDE_RS02695 PF00005 ABC transporter ALIDE_RS02710 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS02715 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS02715 PF00005 ABC transporter ALIDE_RS02720 PF00501 AMP-binding enzyme ALIDE_RS02725 PF01471 Putative peptidoglycan binding domain ALIDE_RS02725 PF13401 AAA domain ALIDE_RS02735 PF13545 Crp-like helix-turn-helix domain ALIDE_RS02735 PF00027 Cyclic nucleotide-binding domain ALIDE_RS02740 PF00849 RNA pseudouridylate synthase ALIDE_RS02740 PF01479 S4 domain ALIDE_RS02745 PF00183 Hsp90 protein ALIDE_RS02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS02755 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS02760 PF01636 Phosphotransferase enzyme family ALIDE_RS02765 PF03793 PASTA domain ALIDE_RS02765 PF00069 Protein kinase domain ALIDE_RS02775 PF02515 CoA-transferase family III ALIDE_RS02785 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS02790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALIDE_RS02790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALIDE_RS02795 PF00732 GMC oxidoreductase ALIDE_RS02795 PF05199 GMC oxidoreductase ALIDE_RS02805 PF01061 ABC-2 type transporter ALIDE_RS02810 PF00005 ABC transporter ALIDE_RS02815 PF07519 Tannase and feruloyl esterase ALIDE_RS02820 PF01048 Phosphorylase superfamily ALIDE_RS02820 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus ALIDE_RS02825 PF00563 EAL domain ALIDE_RS02825 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS02825 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS02825 PF13188 PAS domain ALIDE_RS02830 PF01545 Cation efflux family ALIDE_RS02830 PF16916 Dimerisation domain of Zinc Transporter ALIDE_RS02835 PF02580 D-Tyr-tRNA(Tyr) deacylase ALIDE_RS02840 PF01925 Sulfite exporter TauE/SafE ALIDE_RS02845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS02845 PF03466 LysR substrate binding domain ALIDE_RS02850 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS02855 PF02515 CoA-transferase family III ALIDE_RS02860 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS02860 PF00107 Zinc-binding dehydrogenase ALIDE_RS02865 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS02865 PF00501 AMP-binding enzyme ALIDE_RS02870 PF02130 Uncharacterized protein family UPF0054 ALIDE_RS02875 PF02562 PhoH-like protein ALIDE_RS02880 PF01330 RuvA N terminal domain ALIDE_RS02880 PF07499 RuvA, C-terminal domain ALIDE_RS02890 PF00012 Hsp70 protein ALIDE_RS02895 PF00012 Hsp70 protein ALIDE_RS02905 PF05491 RuvB C-terminal winged helix domain ALIDE_RS02905 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALIDE_RS02905 PF17864 RuvB AAA lid domain ALIDE_RS02910 PF02308 MgtC family ALIDE_RS02925 PF14031 Putative serine dehydratase domain ALIDE_RS02925 PF01168 Alanine racemase, N-terminal domain ALIDE_RS02930 PF00300 Histidine phosphatase superfamily (branch 1) ALIDE_RS02940 PF01171 PP-loop family ALIDE_RS02975 PF00480 ROK family ALIDE_RS02980 PF00982 Glycosyltransferase family 20 ALIDE_RS02990 PF02358 Trehalose-phosphatase ALIDE_RS02995 PF00085 Thioredoxin ALIDE_RS03000 PF12627 Probable RNA and SrmB- binding site of polymerase A ALIDE_RS03000 PF01966 HD domain ALIDE_RS03000 PF01743 Poly A polymerase head domain ALIDE_RS03005 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS03005 PF00158 Sigma-54 interaction domain ALIDE_RS03005 PF01590 GAF domain ALIDE_RS03020 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS03035 PF01812 5-formyltetrahydrofolate cyclo-ligase family ALIDE_RS03040 PF10145 Phage-related minor tail protein ALIDE_RS03040 PF01551 Peptidase family M23 ALIDE_RS03040 PF01464 Transglycosylase SLT domain ALIDE_RS03055 PF13640 2OG-Fe(II) oxygenase superfamily ALIDE_RS03055 PF18331 PKHD-type hydroxylase C-terminal domain ALIDE_RS03060 PF01070 FMN-dependent dehydrogenase ALIDE_RS03065 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS03065 PF00593 TonB dependent receptor ALIDE_RS03075 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS03075 PF00501 AMP-binding enzyme ALIDE_RS03085 PF00109 Beta-ketoacyl synthase, N-terminal domain ALIDE_RS03085 PF02801 Beta-ketoacyl synthase, C-terminal domain ALIDE_RS03090 PF07977 FabA-like domain ALIDE_RS03095 PF00795 Carbon-nitrogen hydrolase ALIDE_RS03100 PF00571 CBS domain ALIDE_RS03100 PF03471 Transporter associated domain ALIDE_RS03110 PF01037 Lrp/AsnC ligand binding domain ALIDE_RS03115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALIDE_RS03120 PF00351 Biopterin-dependent aromatic amino acid hydroxylase ALIDE_RS03125 PF00676 Dehydrogenase E1 component ALIDE_RS03125 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal ALIDE_RS03130 PF02779 Transketolase, pyrimidine binding domain ALIDE_RS03130 PF02780 Transketolase, C-terminal domain ALIDE_RS03135 PF02817 e3 binding domain ALIDE_RS03135 PF00364 Biotin-requiring enzyme ALIDE_RS03135 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALIDE_RS03140 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS03140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALIDE_RS03145 PF02091 Glycyl-tRNA synthetase alpha subunit ALIDE_RS03150 PF05746 DALR anticodon binding domain ALIDE_RS03150 PF02092 Glycyl-tRNA synthetase beta subunit ALIDE_RS03160 PF01553 Acyltransferase ALIDE_RS03175 PF04972 BON domain ALIDE_RS03175 PF01476 LysM domain ALIDE_RS03180 PF03309 Type III pantothenate kinase ALIDE_RS03185 PF00440 Bacterial regulatory proteins, tetR family ALIDE_RS03185 PF08361 MAATS-type transcriptional repressor, C-terminal region ALIDE_RS03195 PF16363 GDP-mannose 4,6 dehydratase ALIDE_RS03200 PF04321 RmlD substrate binding domain ALIDE_RS03205 PF00483 Nucleotidyl transferase ALIDE_RS03210 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ALIDE_RS03220 PF00535 Glycosyl transferase family 2 ALIDE_RS03225 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ALIDE_RS03225 PF00437 Type II/IV secretion system protein ALIDE_RS03230 PF00482 Type II secretion system (T2SS), protein F ALIDE_RS03240 PF00114 Pilin (bacterial filament) ALIDE_RS03240 PF07963 Prokaryotic N-terminal methylation motif ALIDE_RS03250 PF11612 Type II secretion system (T2SS), protein J ALIDE_RS03250 PF07963 Prokaryotic N-terminal methylation motif ALIDE_RS03255 PF03934 Type II secretion system (T2SS), protein K ALIDE_RS03275 PF00263 Bacterial type II and III secretion system protein ALIDE_RS03275 PF03958 Bacterial type II/III secretion system short domain ALIDE_RS03305 PF00535 Glycosyl transferase family 2 ALIDE_RS03315 PF01061 ABC-2 type transporter ALIDE_RS03320 PF14524 Wzt C-terminal domain ALIDE_RS03320 PF00005 ABC transporter ALIDE_RS03330 PF00398 Ribosomal RNA adenine dimethylase ALIDE_RS03335 PF01551 Peptidase family M23 ALIDE_RS03335 PF01464 Transglycosylase SLT domain ALIDE_RS03335 PF10145 Phage-related minor tail protein ALIDE_RS03345 PF00696 Amino acid kinase family ALIDE_RS03350 PF00440 Bacterial regulatory proteins, tetR family ALIDE_RS03360 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS03360 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS03360 PF12806 Acetyl-CoA dehydrogenase C-terminal like ALIDE_RS03360 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS03370 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS03370 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALIDE_RS03370 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALIDE_RS03375 PF02803 Thiolase, C-terminal domain ALIDE_RS03375 PF00108 Thiolase, N-terminal domain ALIDE_RS03385 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS03395 PF03061 Thioesterase superfamily ALIDE_RS03400 PF00005 ABC transporter ALIDE_RS03400 PF00664 ABC transporter transmembrane region ALIDE_RS03405 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS03405 PF00501 AMP-binding enzyme ALIDE_RS03425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS03425 PF03466 LysR substrate binding domain ALIDE_RS03435 PF03480 Bacterial extracellular solute-binding protein, family 7 ALIDE_RS03440 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALIDE_RS03440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALIDE_RS03445 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALIDE_RS03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS03450 PF03466 LysR substrate binding domain ALIDE_RS03455 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS03460 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS03465 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS03470 PF00005 ABC transporter ALIDE_RS03475 PF02423 Ornithine cyclodeaminase/mu-crystallin family ALIDE_RS03485 PF16658 Class II release factor RF3, C-terminal domain ALIDE_RS03485 PF03144 Elongation factor Tu domain 2 ALIDE_RS03485 PF00009 Elongation factor Tu GTP binding domain ALIDE_RS03495 PF05221 S-adenosyl-L-homocysteine hydrolase ALIDE_RS03495 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ALIDE_RS03500 PF01728 FtsJ-like methyltransferase ALIDE_RS03500 PF01479 S4 domain ALIDE_RS03505 PF02219 Methylenetetrahydrofolate reductase ALIDE_RS03510 PF03330 Lytic transglycolase ALIDE_RS03515 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ALIDE_RS03520 PF00069 Protein kinase domain ALIDE_RS03520 PF08308 PEGA domain ALIDE_RS03525 PF00572 Ribosomal protein L13 ALIDE_RS03530 PF00380 Ribosomal protein S9/S16 ALIDE_RS03535 PF01521 Iron-sulphur cluster biosynthesis ALIDE_RS03540 PF03702 Anhydro-N-acetylmuramic acid kinase ALIDE_RS03545 PF04225 Opacity-associated protein A LysM-like domain ALIDE_RS03545 PF01551 Peptidase family M23 ALIDE_RS03550 PF01479 S4 domain ALIDE_RS03550 PF00579 tRNA synthetases class I (W and Y) ALIDE_RS03555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS03555 PF03466 LysR substrate binding domain ALIDE_RS03560 PF12804 MobA-like NTP transferase domain ALIDE_RS03560 PF00132 Bacterial transferase hexapeptide (six repeats) ALIDE_RS03565 PF13493 Domain of unknown function (DUF4118) ALIDE_RS03565 PF13492 GAF domain ALIDE_RS03565 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS03565 PF02702 Osmosensitive K+ channel His kinase sensor domain ALIDE_RS03565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS03575 PF00226 DnaJ domain ALIDE_RS03575 PF01556 DnaJ C terminal domain ALIDE_RS03580 PF01037 Lrp/AsnC ligand binding domain ALIDE_RS03585 PF01380 SIS domain ALIDE_RS03595 PF02601 Exonuclease VII, large subunit ALIDE_RS03595 PF13742 OB-fold nucleic acid binding domain ALIDE_RS03600 PF13333 Integrase core domain ALIDE_RS03600 PF00665 Integrase core domain ALIDE_RS03600 PF13276 HTH-like domain ALIDE_RS03605 PF01527 Transposase ALIDE_RS03620 PF00174 Oxidoreductase molybdopterin binding domain ALIDE_RS03625 PF01292 Prokaryotic cytochrome b561 ALIDE_RS03630 PF00072 Response regulator receiver domain ALIDE_RS03630 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS03635 PF00672 HAMP domain ALIDE_RS03635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS03635 PF18698 Histidine kinase sensor domain ALIDE_RS03635 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS03635 PF00989 PAS fold ALIDE_RS03655 PF00483 Nucleotidyl transferase ALIDE_RS03655 PF01050 Mannose-6-phosphate isomerase ALIDE_RS03670 PF13614 AAA domain ALIDE_RS03675 PF13401 AAA domain ALIDE_RS03675 PF01471 Putative peptidoglycan binding domain ALIDE_RS03700 PF00733 Asparagine synthase ALIDE_RS03700 PF13537 Glutamine amidotransferase domain ALIDE_RS03705 PF00534 Glycosyl transferases group 1 ALIDE_RS03710 PF00534 Glycosyl transferases group 1 ALIDE_RS03710 PF08323 Starch synthase catalytic domain ALIDE_RS03715 PF02350 UDP-N-acetylglucosamine 2-epimerase ALIDE_RS03720 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALIDE_RS03720 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALIDE_RS03720 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALIDE_RS03725 PF00534 Glycosyl transferases group 1 ALIDE_RS03725 PF13439 Glycosyltransferase Family 4 ALIDE_RS03750 PF00535 Glycosyl transferase family 2 ALIDE_RS03760 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALIDE_RS03760 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALIDE_RS03760 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALIDE_RS03765 PF01370 NAD dependent epimerase/dehydratase family ALIDE_RS03805 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS03805 PF00501 AMP-binding enzyme ALIDE_RS03810 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALIDE_RS03810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALIDE_RS03815 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS03815 PF00672 HAMP domain ALIDE_RS03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS03820 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS03820 PF00072 Response regulator receiver domain ALIDE_RS03820 PF00158 Sigma-54 interaction domain ALIDE_RS03835 PF01176 Translation initiation factor 1A / IF-1 ALIDE_RS03840 PF13532 2OG-Fe(II) oxygenase superfamily ALIDE_RS03845 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS03845 PF00501 AMP-binding enzyme ALIDE_RS03850 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS03850 PF00175 Oxidoreductase NAD-binding domain ALIDE_RS03850 PF00970 Oxidoreductase FAD-binding domain ALIDE_RS03870 PF05981 CreA protein ALIDE_RS03875 PF08245 Mur ligase middle domain ALIDE_RS03875 PF02875 Mur ligase family, glutamate ligase domain ALIDE_RS03875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS03880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS03880 PF02875 Mur ligase family, glutamate ligase domain ALIDE_RS03880 PF08245 Mur ligase middle domain ALIDE_RS03885 PF00664 ABC transporter transmembrane region ALIDE_RS03885 PF00005 ABC transporter ALIDE_RS03900 PF00009 Elongation factor Tu GTP binding domain ALIDE_RS03900 PF03144 Elongation factor Tu domain 2 ALIDE_RS03900 PF14492 Elongation Factor G, domain II ALIDE_RS03900 PF00679 Elongation factor G C-terminus ALIDE_RS03900 PF03764 Elongation factor G, domain IV ALIDE_RS03910 PF00482 Type II secretion system (T2SS), protein F ALIDE_RS03915 PF00296 Luciferase-like monooxygenase ALIDE_RS03925 PF00437 Type II/IV secretion system protein ALIDE_RS03930 PF00263 Bacterial type II and III secretion system protein ALIDE_RS03930 PF03958 Bacterial type II/III secretion system short domain ALIDE_RS03955 PF07963 Prokaryotic N-terminal methylation motif ALIDE_RS03955 PF11612 Type II secretion system (T2SS), protein J ALIDE_RS03960 PF02501 Type II secretion system (T2SS), protein I ALIDE_RS03960 PF07963 Prokaryotic N-terminal methylation motif ALIDE_RS03970 PF07963 Prokaryotic N-terminal methylation motif ALIDE_RS03970 PF08334 Type II secretion system (T2SS), protein G ALIDE_RS03985 PF02654 Cobalamin-5-phosphate synthase ALIDE_RS03990 PF00585 C-terminal regulatory domain of Threonine dehydratase ALIDE_RS03990 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS03995 PF02566 OsmC-like protein ALIDE_RS04000 PF03232 Ubiquinone biosynthesis protein COQ7 ALIDE_RS04005 PF13609 Gram-negative porin ALIDE_RS04015 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS04020 PF07687 Peptidase dimerisation domain ALIDE_RS04020 PF01546 Peptidase family M20/M25/M40 ALIDE_RS04025 PF12911 N-terminal TM domain of oligopeptide transport permease C ALIDE_RS04025 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS04030 PF00005 ABC transporter ALIDE_RS04030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALIDE_RS04035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALIDE_RS04035 PF00005 ABC transporter ALIDE_RS04040 PF01161 Phosphatidylethanolamine-binding protein ALIDE_RS04045 PF02685 Glucokinase ALIDE_RS04045 PF01418 Helix-turn-helix domain, rpiR family ALIDE_RS04045 PF01380 SIS domain ALIDE_RS04050 PF00923 Transaldolase/Fructose-6-phosphate aldolase ALIDE_RS04055 PF00342 Phosphoglucose isomerase ALIDE_RS04060 PF00118 TCP-1/cpn60 chaperonin family ALIDE_RS04065 PF00166 Chaperonin 10 Kd subunit ALIDE_RS04070 PF01467 Cytidylyltransferase-like ALIDE_RS04075 PF02773 S-adenosylmethionine synthetase, C-terminal domain ALIDE_RS04075 PF00438 S-adenosylmethionine synthetase, N-terminal domain ALIDE_RS04075 PF02772 S-adenosylmethionine synthetase, central domain ALIDE_RS04085 PF03279 Bacterial lipid A biosynthesis acyltransferase ALIDE_RS04090 PF03466 LysR substrate binding domain ALIDE_RS04090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS04095 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS04100 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS04105 PF00180 Isocitrate/isopropylmalate dehydrogenase ALIDE_RS04110 PF04909 Amidohydrolase ALIDE_RS04115 PF01926 50S ribosome-binding GTPase ALIDE_RS04120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS04125 PF05140 ResB-like family ALIDE_RS04130 PF01578 Cytochrome C assembly protein ALIDE_RS04135 PF00174 Oxidoreductase molybdopterin binding domain ALIDE_RS04140 PF01794 Ferric reductase like transmembrane component ALIDE_RS04150 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALIDE_RS04150 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALIDE_RS04155 PF01491 Frataxin-like domain ALIDE_RS04160 PF00912 Transglycosylase ALIDE_RS04160 PF17092 Penicillin-binding protein OB-like domain ALIDE_RS04160 PF00905 Penicillin binding protein transpeptidase domain ALIDE_RS04165 PF11104 Type IV pilus assembly protein PilM; ALIDE_RS04170 PF05137 Fimbrial assembly protein (PilN) ALIDE_RS04185 PF11741 AMIN domain ALIDE_RS04185 PF00263 Bacterial type II and III secretion system protein ALIDE_RS04185 PF07660 Secretin and TonB N terminus short domain ALIDE_RS04185 PF03958 Bacterial type II/III secretion system short domain ALIDE_RS04190 PF00746 LPXTG cell wall anchor motif ALIDE_RS04195 PF01761 3-dehydroquinate synthase ALIDE_RS04200 PF01966 HD domain ALIDE_RS04200 PF13286 Phosphohydrolase-associated domain ALIDE_RS04215 PF00171 Aldehyde dehydrogenase family ALIDE_RS04225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS04225 PF03466 LysR substrate binding domain ALIDE_RS04235 PF01493 GXGXG motif ALIDE_RS04235 PF04898 Glutamate synthase central domain ALIDE_RS04235 PF01645 Conserved region in glutamate synthase ALIDE_RS04235 PF00310 Glutamine amidotransferases class-II ALIDE_RS04240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ALIDE_RS04240 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS04245 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS04250 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS04255 PF00005 ABC transporter ALIDE_RS04265 PF17284 Spermidine synthase tetramerisation domain ALIDE_RS04270 PF02675 S-adenosylmethionine decarboxylase ALIDE_RS04275 PF00005 ABC transporter ALIDE_RS04280 PF02405 Permease MlaE ALIDE_RS04285 PF02470 MlaD protein ALIDE_RS04305 PF08448 PAS fold ALIDE_RS04305 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS04310 PF00005 ABC transporter ALIDE_RS04315 PF01061 ABC-2 type transporter ALIDE_RS04320 PF01722 BolA-like protein ALIDE_RS04325 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALIDE_RS04330 PF01634 ATP phosphoribosyltransferase ALIDE_RS04335 PF00815 Histidinol dehydrogenase ALIDE_RS04350 PF00155 Aminotransferase class I and II ALIDE_RS04355 PF00475 Imidazoleglycerol-phosphate dehydratase ALIDE_RS04360 PF00117 Glutamine amidotransferase class-I ALIDE_RS04365 PF00977 Histidine biosynthesis protein ALIDE_RS04380 PF17101 Stealth protein CR1, conserved region 1 ALIDE_RS04380 PF11380 Stealth protein CR2, conserved region 2 ALIDE_RS04380 PF00534 Glycosyl transferases group 1 ALIDE_RS04380 PF17103 Stealth protein CR4, conserved region 4 ALIDE_RS04380 PF17102 Stealth protein CR3, conserved region 3 ALIDE_RS04410 PF16363 GDP-mannose 4,6 dehydratase ALIDE_RS04415 PF00977 Histidine biosynthesis protein ALIDE_RS04420 PF01502 Phosphoribosyl-AMP cyclohydrolase ALIDE_RS04425 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ALIDE_RS04440 PF01230 HIT domain ALIDE_RS04445 PF02416 mttA/Hcf106 family ALIDE_RS04450 PF02416 mttA/Hcf106 family ALIDE_RS04455 PF00902 Sec-independent protein translocase protein (TatC) ALIDE_RS04460 PF13180 PDZ domain ALIDE_RS04460 PF17820 PDZ domain ALIDE_RS04465 PF01784 NIF3 (NGG1p interacting factor 3) ALIDE_RS04470 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ALIDE_RS04475 PF01741 Large-conductance mechanosensitive channel, MscL ALIDE_RS04480 PF00355 Rieske [2Fe-2S] domain ALIDE_RS04480 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ALIDE_RS04485 PF00032 Cytochrome b(C-terminal)/b6/petD ALIDE_RS04485 PF00033 Cytochrome b/b6/petB ALIDE_RS04490 PF02167 Cytochrome C1 family ALIDE_RS04495 PF00043 Glutathione S-transferase, C-terminal domain ALIDE_RS04495 PF02798 Glutathione S-transferase, N-terminal domain ALIDE_RS04500 PF04386 Stringent starvation protein B ALIDE_RS04515 PF07517 SecA DEAD-like domain ALIDE_RS04515 PF01043 SecA preprotein cross-linking domain ALIDE_RS04515 PF02810 SEC-C motif ALIDE_RS04515 PF07516 SecA Wing and Scaffold domain ALIDE_RS04520 PF01960 ArgJ family ALIDE_RS04530 PF00293 NUDIX domain ALIDE_RS04535 PF03884 DNA gyrase inhibitor YacG ALIDE_RS04540 PF07072 Cell division protein ALIDE_RS04545 PF01121 Dephospho-CoA kinase ALIDE_RS04550 PF06750 Bacterial Peptidase A24 N-terminal domain ALIDE_RS04550 PF01478 Type IV leader peptidase family ALIDE_RS04555 PF00482 Type II secretion system (T2SS), protein F ALIDE_RS04560 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ALIDE_RS04560 PF00437 Type II/IV secretion system protein ALIDE_RS04575 PF13333 Integrase core domain ALIDE_RS04575 PF13276 HTH-like domain ALIDE_RS04575 PF00665 Integrase core domain ALIDE_RS04580 PF01527 Transposase ALIDE_RS04585 PF00589 Phage integrase family ALIDE_RS04595 PF00348 Polyprenyl synthetase ALIDE_RS04600 PF00829 Ribosomal prokaryotic L21 protein ALIDE_RS04605 PF01016 Ribosomal L27 protein ALIDE_RS04610 PF01926 50S ribosome-binding GTPase ALIDE_RS04610 PF01018 GTP1/OBG ALIDE_RS04615 PF00696 Amino acid kinase family ALIDE_RS04615 PF01472 PUA domain ALIDE_RS04620 PF00293 NUDIX domain ALIDE_RS04625 PF03129 Anticodon binding domain ALIDE_RS04625 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALIDE_RS04625 PF04073 Aminoacyl-tRNA editing domain ALIDE_RS04630 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ALIDE_RS04630 PF01464 Transglycosylase SLT domain ALIDE_RS04635 PF01595 Cyclin M transmembrane N-terminal domain ALIDE_RS04635 PF03471 Transporter associated domain ALIDE_RS04635 PF00571 CBS domain ALIDE_RS04640 PF05362 Lon protease (S16) C-terminal proteolytic domain ALIDE_RS04640 PF00004 ATPase family associated with various cellular activities (AAA) ALIDE_RS04640 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALIDE_RS04645 PF00462 Glutaredoxin ALIDE_RS04650 PF05175 Methyltransferase small domain ALIDE_RS04650 PF17827 PrmC N-terminal domain ALIDE_RS04655 PF03462 PCRF domain ALIDE_RS04655 PF00472 RF-1 domain ALIDE_RS04660 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ALIDE_RS04660 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ALIDE_RS04660 PF01488 Shikimate / quinate 5-dehydrogenase ALIDE_RS04670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS04670 PF03466 LysR substrate binding domain ALIDE_RS04675 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS04685 PF12794 Mechanosensitive ion channel inner membrane domain 1 ALIDE_RS04685 PF12795 Mechanosensitive ion channel porin domain ALIDE_RS04685 PF00924 Mechanosensitive ion channel ALIDE_RS04690 PF03009 Glycerophosphoryl diester phosphodiesterase family ALIDE_RS04695 PF17912 MalK OB fold domain ALIDE_RS04695 PF00005 ABC transporter ALIDE_RS04700 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS04705 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS04710 PF13416 Bacterial extracellular solute-binding protein ALIDE_RS04715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALIDE_RS04715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALIDE_RS04735 PF01209 ubiE/COQ5 methyltransferase family ALIDE_RS04750 PF03109 ABC1 family ALIDE_RS04770 PF01336 OB-fold nucleic acid binding domain ALIDE_RS04770 PF02938 GAD domain ALIDE_RS04770 PF00152 tRNA synthetases class II (D, K and N) ALIDE_RS04785 PF13091 PLD-like domain ALIDE_RS04790 PF01227 GTP cyclohydrolase I ALIDE_RS04805 PF00989 PAS fold ALIDE_RS04805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS04805 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS04810 PF00072 Response regulator receiver domain ALIDE_RS04810 PF00196 Bacterial regulatory proteins, luxR family ALIDE_RS04815 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS04830 PF01810 LysE type translocator ALIDE_RS04835 PF01425 Amidase ALIDE_RS04840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALIDE_RS04845 PF00005 ABC transporter ALIDE_RS04845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALIDE_RS04850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALIDE_RS04850 PF00005 ABC transporter ALIDE_RS04855 PF12911 N-terminal TM domain of oligopeptide transport permease C ALIDE_RS04855 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS04860 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS04865 PF00037 4Fe-4S binding domain ALIDE_RS04870 PF01195 Peptidyl-tRNA hydrolase ALIDE_RS04875 PF01386 Ribosomal L25p family ALIDE_RS04875 PF14693 Ribosomal protein TL5, C-terminal domain ALIDE_RS04880 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ALIDE_RS04880 PF14572 Phosphoribosyl synthetase-associated domain ALIDE_RS04890 PF00288 GHMP kinases N terminal domain ALIDE_RS04890 PF08544 GHMP kinases C terminal ALIDE_RS04905 PF06827 Zinc finger found in FPG and IleRS ALIDE_RS04905 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ALIDE_RS04905 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ALIDE_RS04915 PF10576 Iron-sulfur binding domain of endonuclease III ALIDE_RS04915 PF14815 NUDIX domain ALIDE_RS04915 PF00633 Helix-hairpin-helix motif ALIDE_RS04915 PF00730 HhH-GPD superfamily base excision DNA repair protein ALIDE_RS04920 PF03668 P-loop ATPase protein family ALIDE_RS04925 PF02463 RecF/RecN/SMC N terminal domain ALIDE_RS04930 PF01513 ATP-NAD kinase ALIDE_RS04935 PF01628 HrcA protein C terminal domain ALIDE_RS04935 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ALIDE_RS04940 PF03737 Aldolase/RraA ALIDE_RS04945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALIDE_RS04945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALIDE_RS04955 PF00155 Aminotransferase class I and II ALIDE_RS04960 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS04965 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS04970 PF00005 ABC transporter ALIDE_RS04975 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS04980 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS04995 PF02682 Carboxyltransferase domain, subdomain C and D ALIDE_RS05000 PF02626 Carboxyltransferase domain, subdomain A and B ALIDE_RS05005 PF03746 LamB/YcsF family ALIDE_RS05015 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS05015 PF02785 Biotin carboxylase C-terminal domain ALIDE_RS05015 PF00289 Biotin carboxylase, N-terminal domain ALIDE_RS05030 PF06969 HemN C-terminal domain ALIDE_RS05030 PF04055 Radical SAM superfamily ALIDE_RS05035 PF01725 Ham1 family ALIDE_RS05040 PF01138 3' exoribonuclease family, domain 1 ALIDE_RS05040 PF03725 3' exoribonuclease family, domain 2 ALIDE_RS05050 PF03793 PASTA domain ALIDE_RS05050 PF00069 Protein kinase domain ALIDE_RS05055 PF08340 Domain of unknown function (DUF1732) ALIDE_RS05055 PF03755 YicC-like family, N-terminal region ALIDE_RS05125 PF00004 ATPase family associated with various cellular activities (AAA) ALIDE_RS05125 PF17758 Proteasomal ATPase OB N-terminal domain ALIDE_RS05125 PF16450 Proteasomal ATPase OB C-terminal domain ALIDE_RS05150 PF00625 Guanylate kinase ALIDE_RS05155 PF01192 RNA polymerase Rpb6 ALIDE_RS05160 PF02824 TGS domain ALIDE_RS05160 PF13291 ACT domain ALIDE_RS05160 PF04607 Region found in RelA / SpoT proteins ALIDE_RS05165 PF03449 Transcription elongation factor, N-terminal ALIDE_RS05165 PF01272 Transcription elongation factor, GreA/GreB, C-term ALIDE_RS05180 PF00312 Ribosomal protein S15 ALIDE_RS05185 PF00575 S1 RNA binding domain ALIDE_RS05185 PF00013 KH domain ALIDE_RS05185 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ALIDE_RS05185 PF01138 3' exoribonuclease family, domain 1 ALIDE_RS05185 PF03725 3' exoribonuclease family, domain 2 ALIDE_RS05190 PF00550 Phosphopantetheine attachment site ALIDE_RS05190 PF02801 Beta-ketoacyl synthase, C-terminal domain ALIDE_RS05190 PF00109 Beta-ketoacyl synthase, N-terminal domain ALIDE_RS05190 PF16197 Ketoacyl-synthetase C-terminal extension ALIDE_RS05190 PF14765 Polyketide synthase dehydratase ALIDE_RS05190 PF00698 Acyl transferase domain ALIDE_RS05190 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS05190 PF08659 KR domain ALIDE_RS05195 PF00121 Triosephosphate isomerase ALIDE_RS05200 PF03840 Preprotein translocase SecG subunit ALIDE_RS05210 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ALIDE_RS05215 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALIDE_RS05220 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ALIDE_RS05225 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ALIDE_RS05235 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALIDE_RS05235 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALIDE_RS05235 PF10531 SLBB domain ALIDE_RS05240 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ALIDE_RS05240 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALIDE_RS05240 PF00384 Molybdopterin oxidoreductase ALIDE_RS05245 PF00146 NADH dehydrogenase ALIDE_RS05250 PF12838 4Fe-4S dicluster domain ALIDE_RS05255 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ALIDE_RS05260 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALIDE_RS05265 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALIDE_RS05265 PF00361 Proton-conducting membrane transporter ALIDE_RS05270 PF00361 Proton-conducting membrane transporter ALIDE_RS05270 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ALIDE_RS05275 PF00361 Proton-conducting membrane transporter ALIDE_RS05295 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALIDE_RS05295 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALIDE_RS05300 PF01119 DNA mismatch repair protein, C-terminal domain ALIDE_RS05300 PF08676 MutL C terminal dimerisation domain ALIDE_RS05310 PF09335 SNARE associated Golgi protein ALIDE_RS05315 PF01979 Amidohydrolase family ALIDE_RS05320 PF00860 Permease family ALIDE_RS05325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS05325 PF03466 LysR substrate binding domain ALIDE_RS05330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALIDE_RS05330 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALIDE_RS05335 PF00941 FAD binding domain in molybdopterin dehydrogenase ALIDE_RS05335 PF03450 CO dehydrogenase flavoprotein C-terminal domain ALIDE_RS05345 PF11741 AMIN domain ALIDE_RS05345 PF01520 N-acetylmuramoyl-L-alanine amidase ALIDE_RS05350 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ALIDE_RS05355 PF08331 Domain of unknown function (DUF1730) ALIDE_RS05365 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS05370 PF00589 Phage integrase family ALIDE_RS05370 PF02899 Phage integrase, N-terminal SAM-like domain ALIDE_RS05380 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS05385 PF08668 HDOD domain ALIDE_RS05385 PF00563 EAL domain ALIDE_RS05390 PF00563 EAL domain ALIDE_RS05390 PF08668 HDOD domain ALIDE_RS05395 PF04305 Protein of unknown function (DUF455) ALIDE_RS05400 PF00132 Bacterial transferase hexapeptide (six repeats) ALIDE_RS05405 PF01430 Hsp33 protein ALIDE_RS05410 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS05415 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS05420 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS05425 PF00005 ABC transporter ALIDE_RS05430 PF04977 Septum formation initiator ALIDE_RS05435 PF00113 Enolase, C-terminal TIM barrel domain ALIDE_RS05435 PF03952 Enolase, N-terminal domain ALIDE_RS05445 PF00793 DAHP synthetase I family ALIDE_RS05450 PF06418 CTP synthase N-terminus ALIDE_RS05450 PF00117 Glutamine amidotransferase class-I ALIDE_RS05455 PF02441 Flavoprotein ALIDE_RS05455 PF04127 DNA / pantothenate metabolism flavoprotein ALIDE_RS05465 PF00692 dUTPase ALIDE_RS05470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALIDE_RS05475 PF08007 Cupin superfamily protein ALIDE_RS05490 PF06804 NlpB/DapX lipoprotein ALIDE_RS05495 PF00701 Dihydrodipicolinate synthetase family ALIDE_RS05510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS05510 PF00986 DNA gyrase B subunit, carboxyl terminus ALIDE_RS05510 PF00204 DNA gyrase B ALIDE_RS05510 PF01751 Toprim domain ALIDE_RS05515 PF00521 DNA gyrase/topoisomerase IV, subunit A ALIDE_RS05525 PF03772 Competence protein ALIDE_RS05525 PF00753 Metallo-beta-lactamase superfamily ALIDE_RS05530 PF00171 Aldehyde dehydrogenase family ALIDE_RS05535 PF00581 Rhodanese-like domain ALIDE_RS05550 PF02609 Exonuclease VII small subunit ALIDE_RS05555 PF00348 Polyprenyl synthetase ALIDE_RS05560 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ALIDE_RS05560 PF02779 Transketolase, pyrimidine binding domain ALIDE_RS05560 PF02780 Transketolase, C-terminal domain ALIDE_RS05565 PF03480 Bacterial extracellular solute-binding protein, family 7 ALIDE_RS05570 PF00271 Helicase conserved C-terminal domain ALIDE_RS05570 PF08494 DEAD/H associated ALIDE_RS05570 PF00270 DEAD/DEAH box helicase ALIDE_RS05575 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALIDE_RS05585 PF00459 Inositol monophosphatase family ALIDE_RS05590 PF00588 SpoU rRNA Methylase family ALIDE_RS05595 PF00132 Bacterial transferase hexapeptide (six repeats) ALIDE_RS05605 PF00107 Zinc-binding dehydrogenase ALIDE_RS05605 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS05610 PF00994 Probable molybdopterin binding domain ALIDE_RS05615 PF04751 Protein of unknown function (DUF615) ALIDE_RS05620 PF01523 Putative modulator of DNA gyrase ALIDE_RS05625 PF00182 Chitinase class I ALIDE_RS05655 PF01726 LexA DNA binding domain ALIDE_RS05655 PF00717 Peptidase S24-like ALIDE_RS05660 PF01527 Transposase ALIDE_RS05690 PF00206 Lyase ALIDE_RS05690 PF10415 Fumarase C C-terminus ALIDE_RS05695 PF00027 Cyclic nucleotide-binding domain ALIDE_RS05695 PF13545 Crp-like helix-turn-helix domain ALIDE_RS05700 PF04069 Substrate binding domain of ABC-type glycine betaine transport system ALIDE_RS05705 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS05710 PF00571 CBS domain ALIDE_RS05710 PF00005 ABC transporter ALIDE_RS05715 PF00501 AMP-binding enzyme ALIDE_RS05715 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS05715 PF16177 Acetyl-coenzyme A synthetase N-terminus ALIDE_RS05720 PF00092 von Willebrand factor type A domain ALIDE_RS05720 PF07584 Aerotolerance regulator N-terminal ALIDE_RS05725 PF01882 Protein of unknown function DUF58 ALIDE_RS05730 PF17863 AAA lid domain ALIDE_RS05730 PF07726 ATPase family associated with various cellular activities (AAA) ALIDE_RS05735 PF00595 PDZ domain ALIDE_RS05740 PF02627 Carboxymuconolactone decarboxylase family ALIDE_RS05745 PF01022 Bacterial regulatory protein, arsR family ALIDE_RS05755 PF01026 TatD related DNase ALIDE_RS05770 PF00437 Type II/IV secretion system protein ALIDE_RS05770 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ALIDE_RS05780 PF01970 Tripartite tricarboxylate transporter TctA family ALIDE_RS05785 PF00106 short chain dehydrogenase ALIDE_RS05795 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS05795 PF00563 EAL domain ALIDE_RS05795 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS05800 PF00892 EamA-like transporter family ALIDE_RS05805 PF00107 Zinc-binding dehydrogenase ALIDE_RS05805 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS05815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS05815 PF03466 LysR substrate binding domain ALIDE_RS05820 PF13593 SBF-like CPA transporter family (DUF4137) ALIDE_RS05825 PF02690 Na+/Pi-cotransporter ALIDE_RS05830 PF00149 Calcineurin-like phosphoesterase ALIDE_RS05835 PF12857 TOBE-like domain ALIDE_RS05835 PF17850 CysA C-terminal regulatory domain ALIDE_RS05835 PF00005 ABC transporter ALIDE_RS05840 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS05845 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS05855 PF00356 Bacterial regulatory proteins, lacI family ALIDE_RS05860 PF01252 Signal peptidase (SPase) II ALIDE_RS05865 PF06827 Zinc finger found in FPG and IleRS ALIDE_RS05865 PF00133 tRNA synthetases class I (I, L, M and V) ALIDE_RS05865 PF08264 Anticodon-binding domain of tRNA ALIDE_RS05870 PF01687 Riboflavin kinase ALIDE_RS05870 PF06574 FAD synthetase ALIDE_RS05880 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS05880 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS05880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS05885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS05885 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS05885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS05890 PF04337 Protein of unknown function, DUF480 ALIDE_RS05895 PF00551 Formyl transferase ALIDE_RS05900 PF01029 NusB family ALIDE_RS05900 PF01189 16S rRNA methyltransferase RsmB/F ALIDE_RS05905 PF00471 Ribosomal protein L33 ALIDE_RS05910 PF00830 Ribosomal L28 family ALIDE_RS05915 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS05920 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ALIDE_RS05920 PF17854 FtsK alpha domain ALIDE_RS05920 PF09397 Ftsk gamma domain ALIDE_RS05920 PF01580 FtsK/SpoIIIE family ALIDE_RS05925 PF03548 Outer membrane lipoprotein carrier protein LolA ALIDE_RS05930 PF01040 UbiA prenyltransferase family ALIDE_RS05935 PF03167 Uracil DNA glycosylase superfamily ALIDE_RS05940 PF00004 ATPase family associated with various cellular activities (AAA) ALIDE_RS05940 PF16193 AAA C-terminal domain ALIDE_RS05940 PF12002 MgsA AAA+ ATPase C terminal ALIDE_RS05945 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS05950 PF11862 Domain of unknown function (DUF3382) ALIDE_RS05950 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS05955 PF00005 ABC transporter ALIDE_RS05955 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS05960 PF00005 ABC transporter ALIDE_RS05975 PF01865 Protein of unknown function DUF47 ALIDE_RS05980 PF01384 Phosphate transporter family ALIDE_RS05995 PF00886 Ribosomal protein S16 ALIDE_RS06000 PF01782 RimM N-terminal domain ALIDE_RS06000 PF05239 PRC-barrel domain ALIDE_RS06005 PF01746 tRNA (Guanine-1)-methyltransferase ALIDE_RS06010 PF01245 Ribosomal protein L19 ALIDE_RS06015 PF00293 NUDIX domain ALIDE_RS06020 PF03186 CobD/Cbib protein ALIDE_RS06020 PF17113 Regulatory signalling modulator protein AmpE ALIDE_RS06025 PF00155 Aminotransferase class I and II ALIDE_RS06030 PF01740 STAS domain ALIDE_RS06030 PF00916 Sulfate permease family ALIDE_RS06035 PF03193 RsgA GTPase ALIDE_RS06040 PF01329 Pterin 4 alpha carbinolamine dehydratase ALIDE_RS06045 PF01435 Peptidase family M48 ALIDE_RS06050 PF00929 Exonuclease ALIDE_RS06055 PF13458 Periplasmic binding protein ALIDE_RS06060 PF00271 Helicase conserved C-terminal domain ALIDE_RS06060 PF00270 DEAD/DEAH box helicase ALIDE_RS06065 PF08447 PAS fold ALIDE_RS06065 PF05231 MASE1 ALIDE_RS06065 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS06065 PF00563 EAL domain ALIDE_RS06065 PF13426 PAS domain ALIDE_RS06065 PF08448 PAS fold ALIDE_RS06070 PF07690 Major Facilitator Superfamily ALIDE_RS06105 PF00005 ABC transporter ALIDE_RS06115 PF00593 TonB dependent receptor ALIDE_RS06115 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS06120 PF02514 CobN/Magnesium Chelatase ALIDE_RS06195 PF05840 Bacteriophage replication gene A protein (GPA) ALIDE_RS06235 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ALIDE_RS06235 PF00533 BRCA1 C Terminus (BRCT) domain ALIDE_RS06235 PF01653 NAD-dependent DNA ligase adenylation domain ALIDE_RS06235 PF03120 NAD-dependent DNA ligase OB-fold domain ALIDE_RS06235 PF12826 Helix-hairpin-helix motif ALIDE_RS06405 PF00478 IMP dehydrogenase / GMP reductase domain ALIDE_RS06410 PF13361 UvrD-like helicase C-terminal domain ALIDE_RS06410 PF00580 UvrD/REP helicase N-terminal domain ALIDE_RS06420 PF00360 Phytochrome region ALIDE_RS06420 PF01590 GAF domain ALIDE_RS06420 PF00563 EAL domain ALIDE_RS06420 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS06430 PF01636 Phosphotransferase enzyme family ALIDE_RS06445 PF00476 DNA polymerase family A ALIDE_RS06445 PF01612 3'-5' exonuclease ALIDE_RS06445 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ALIDE_RS06445 PF01367 5'-3' exonuclease, C-terminal SAM fold ALIDE_RS06450 PF03466 LysR substrate binding domain ALIDE_RS06450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS06460 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS06470 PF03466 LysR substrate binding domain ALIDE_RS06470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS06475 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS06480 PF02515 CoA-transferase family III ALIDE_RS06485 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS06490 PF01738 Dienelactone hydrolase family ALIDE_RS06500 PF00072 Response regulator receiver domain ALIDE_RS06500 PF04397 LytTr DNA-binding domain ALIDE_RS06510 PF08125 Mannitol dehydrogenase C-terminal domain ALIDE_RS06510 PF01232 Mannitol dehydrogenase Rossmann domain ALIDE_RS06520 PF02559 CarD-like/TRCF domain ALIDE_RS06520 PF17757 UvrB interaction domain ALIDE_RS06520 PF03461 TRCF domain ALIDE_RS06520 PF00270 DEAD/DEAH box helicase ALIDE_RS06520 PF00271 Helicase conserved C-terminal domain ALIDE_RS06525 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ALIDE_RS06525 PF02542 YgbB family ALIDE_RS06530 PF02542 YgbB family ALIDE_RS06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS06535 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS06535 PF00672 HAMP domain ALIDE_RS06540 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS06540 PF00072 Response regulator receiver domain ALIDE_RS06550 PF00106 short chain dehydrogenase ALIDE_RS06560 PF04607 Region found in RelA / SpoT proteins ALIDE_RS06560 PF13291 ACT domain ALIDE_RS06560 PF02824 TGS domain ALIDE_RS06575 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ALIDE_RS06580 PF05233 PHB accumulation regulatory domain ALIDE_RS06580 PF07879 PHB/PHA accumulation regulator DNA-binding domain ALIDE_RS06585 PF18693 TRAM domain ALIDE_RS06585 PF00919 Uncharacterized protein family UPF0004 ALIDE_RS06585 PF04055 Radical SAM superfamily ALIDE_RS06590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALIDE_RS06600 PF03466 LysR substrate binding domain ALIDE_RS06600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS06605 PF00682 HMGL-like ALIDE_RS06610 PF02515 CoA-transferase family III ALIDE_RS06615 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS06620 PF02558 Ketopantoate reductase PanE/ApbA ALIDE_RS06620 PF08546 Ketopantoate reductase PanE/ApbA C terminal ALIDE_RS06630 PF04546 Sigma-70, non-essential region ALIDE_RS06630 PF04539 Sigma-70 region 3 ALIDE_RS06630 PF03979 Sigma-70 factor, region 1.1 ALIDE_RS06630 PF04545 Sigma-70, region 4 ALIDE_RS06630 PF04542 Sigma-70 region 2 ALIDE_RS06630 PF00140 Sigma-70 factor, region 1.2 ALIDE_RS06635 PF08278 DNA primase DnaG DnaB-binding ALIDE_RS06635 PF10410 DnaB-helicase binding domain of primase ALIDE_RS06635 PF01807 CHC2 zinc finger ALIDE_RS06635 PF08275 DNA primase catalytic core, N-terminal domain ALIDE_RS06640 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS06640 PF00501 AMP-binding enzyme ALIDE_RS06645 PF13091 PLD-like domain ALIDE_RS06650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS06650 PF03459 TOBE domain ALIDE_RS06655 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS06660 PF00005 ABC transporter ALIDE_RS06665 PF12849 PBP superfamily domain ALIDE_RS06675 PF00005 ABC transporter ALIDE_RS06675 PF03459 TOBE domain ALIDE_RS06680 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS06690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS06690 PF03459 TOBE domain ALIDE_RS06695 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS06695 PF00005 ABC transporter ALIDE_RS06700 PF00005 ABC transporter ALIDE_RS06715 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS06740 PF00011 Hsp20/alpha crystallin family ALIDE_RS06745 PF00005 ABC transporter ALIDE_RS06755 PF07690 Major Facilitator Superfamily ALIDE_RS06760 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALIDE_RS06760 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALIDE_RS06765 PF01230 HIT domain ALIDE_RS06770 PF13609 Gram-negative porin ALIDE_RS06780 PF08447 PAS fold ALIDE_RS06780 PF08448 PAS fold ALIDE_RS06780 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS06780 PF00563 EAL domain ALIDE_RS06780 PF13426 PAS domain ALIDE_RS06780 PF05231 MASE1 ALIDE_RS06785 PF00005 ABC transporter ALIDE_RS06790 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS06800 PF02608 ABC transporter substrate-binding protein PnrA-like ALIDE_RS06805 PF02608 ABC transporter substrate-binding protein PnrA-like ALIDE_RS06810 PF01266 FAD dependent oxidoreductase ALIDE_RS06815 PF00005 ABC transporter ALIDE_RS06820 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS06825 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS06830 PF09339 IclR helix-turn-helix domain ALIDE_RS06830 PF01614 Bacterial transcriptional regulator ALIDE_RS06840 PF00962 Adenosine/AMP deaminase ALIDE_RS06850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALIDE_RS06855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALIDE_RS06855 PF00005 ABC transporter ALIDE_RS06860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALIDE_RS06860 PF00005 ABC transporter ALIDE_RS06865 PF12911 N-terminal TM domain of oligopeptide transport permease C ALIDE_RS06865 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS06870 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS06875 PF03466 LysR substrate binding domain ALIDE_RS06875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS06880 PF04199 Putative cyclase ALIDE_RS06885 PF03692 Putative zinc- or iron-chelating domain ALIDE_RS06895 PF07670 Nucleoside recognition ALIDE_RS06895 PF02421 Ferrous iron transport protein B ALIDE_RS06895 PF07664 Ferrous iron transport protein B C terminus ALIDE_RS06905 PF03692 Putative zinc- or iron-chelating domain ALIDE_RS06920 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALIDE_RS06920 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALIDE_RS06925 PF00202 Aminotransferase class-III ALIDE_RS06935 PF03737 Aldolase/RraA ALIDE_RS06940 PF01649 Ribosomal protein S20 ALIDE_RS06945 PF03023 Lipid II flippase MurJ ALIDE_RS06950 PF13369 Transglutaminase-like superfamily ALIDE_RS06955 PF00582 Universal stress protein family ALIDE_RS06965 PF00586 AIR synthase related protein, N-terminal domain ALIDE_RS06965 PF02769 AIR synthase related protein, C-terminal domain ALIDE_RS06975 PF00308 Bacterial dnaA protein ALIDE_RS06985 PF01743 Poly A polymerase head domain ALIDE_RS06985 PF12627 Probable RNA and SrmB- binding site of polymerase A ALIDE_RS06985 PF12626 Polymerase A arginine-rich C-terminus ALIDE_RS06990 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ALIDE_RS06995 PF00535 Glycosyl transferase family 2 ALIDE_RS07000 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ALIDE_RS07015 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS07020 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS07030 PF03466 LysR substrate binding domain ALIDE_RS07030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS07035 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS07040 PF00970 Oxidoreductase FAD-binding domain ALIDE_RS07040 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS07040 PF00175 Oxidoreductase NAD-binding domain ALIDE_RS07065 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS07070 PF02515 CoA-transferase family III ALIDE_RS07075 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS07075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS07075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS07080 PF03466 LysR substrate binding domain ALIDE_RS07080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS07155 PF01527 Transposase ALIDE_RS07160 PF13276 HTH-like domain ALIDE_RS07160 PF00665 Integrase core domain ALIDE_RS07160 PF13333 Integrase core domain ALIDE_RS07180 PF13356 Arm DNA-binding domain ALIDE_RS07180 PF00589 Phage integrase family ALIDE_RS07195 PF00271 Helicase conserved C-terminal domain ALIDE_RS07195 PF00270 DEAD/DEAH box helicase ALIDE_RS07200 PF12848 ABC transporter ALIDE_RS07200 PF00005 ABC transporter ALIDE_RS07210 PF03576 Peptidase family S58 ALIDE_RS07235 PF00403 Heavy-metal-associated domain ALIDE_RS07240 PF13411 MerR HTH family regulatory protein ALIDE_RS07265 PF03853 YjeF-related protein N-terminus ALIDE_RS07265 PF01256 Carbohydrate kinase ALIDE_RS07270 PF01266 FAD dependent oxidoreductase ALIDE_RS07275 PF01425 Amidase ALIDE_RS07280 PF00318 Ribosomal protein S2 ALIDE_RS07285 PF00889 Elongation factor TS ALIDE_RS07290 PF00696 Amino acid kinase family ALIDE_RS07295 PF01765 Ribosome recycling factor ALIDE_RS07300 PF01255 Putative undecaprenyl diphosphate synthase ALIDE_RS07310 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ALIDE_RS07310 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ALIDE_RS07310 PF13288 DXP reductoisomerase C-terminal domain ALIDE_RS07315 PF02163 Peptidase family M50 ALIDE_RS07315 PF17820 PDZ domain ALIDE_RS07320 PF01103 Surface antigen ALIDE_RS07320 PF07244 Surface antigen variable number repeat ALIDE_RS07330 PF00132 Bacterial transferase hexapeptide (six repeats) ALIDE_RS07330 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ALIDE_RS07330 PF14602 Hexapeptide repeat of succinyl-transferase ALIDE_RS07335 PF07977 FabA-like domain ALIDE_RS07340 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ALIDE_RS07340 PF00132 Bacterial transferase hexapeptide (six repeats) ALIDE_RS07345 PF02684 Lipid-A-disaccharide synthetase ALIDE_RS07350 PF01351 Ribonuclease HII ALIDE_RS07355 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALIDE_RS07355 PF00588 SpoU rRNA Methylase family ALIDE_RS07360 PF02899 Phage integrase, N-terminal SAM-like domain ALIDE_RS07360 PF00589 Phage integrase family ALIDE_RS07365 PF01527 Transposase ALIDE_RS07370 PF13276 HTH-like domain ALIDE_RS07370 PF00665 Integrase core domain ALIDE_RS07370 PF13333 Integrase core domain ALIDE_RS07380 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ALIDE_RS07385 PF01433 Peptidase family M1 domain ALIDE_RS07385 PF11940 Domain of unknown function (DUF3458) Ig-like fold ALIDE_RS07385 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ALIDE_RS07390 PF00472 RF-1 domain ALIDE_RS07390 PF03462 PCRF domain ALIDE_RS07395 PF01113 Dihydrodipicolinate reductase, N-terminus ALIDE_RS07395 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain ALIDE_RS07410 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS07415 PF00005 ABC transporter ALIDE_RS07415 PF08402 TOBE domain ALIDE_RS07420 PF00248 Aldo/keto reductase family ALIDE_RS07425 PF04073 Aminoacyl-tRNA editing domain ALIDE_RS07430 PF02660 Glycerol-3-phosphate acyltransferase ALIDE_RS07445 PF04461 Protein of unknown function (DUF520) ALIDE_RS07450 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ALIDE_RS07450 PF01565 FAD binding domain ALIDE_RS07460 PF02592 Putative vitamin uptake transporter ALIDE_RS07465 PF06508 Queuosine biosynthesis protein QueC ALIDE_RS07470 PF05378 Hydantoinase/oxoprolinase N-terminal region ALIDE_RS07470 PF01968 Hydantoinase/oxoprolinase ALIDE_RS07475 PF02538 Hydantoinase B/oxoprolinase ALIDE_RS07480 PF08882 Acetone carboxylase gamma subunit ALIDE_RS07485 PF00158 Sigma-54 interaction domain ALIDE_RS07485 PF01590 GAF domain ALIDE_RS07485 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS07490 PF00764 Arginosuccinate synthase ALIDE_RS07495 PF06865 Pyrimidine/purine nucleoside phosphorylase ALIDE_RS07505 PF03960 ArsC family ALIDE_RS07510 PF08245 Mur ligase middle domain ALIDE_RS07510 PF02875 Mur ligase family, glutamate ligase domain ALIDE_RS07520 PF02674 Colicin V production protein ALIDE_RS07525 PF00156 Phosphoribosyl transferase domain ALIDE_RS07530 PF01053 Cys/Met metabolism PLP-dependent enzyme ALIDE_RS07535 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALIDE_RS07570 PF00106 short chain dehydrogenase ALIDE_RS07585 PF03050 Transposase IS66 family ALIDE_RS07585 PF13817 IS66 C-terminal element ALIDE_RS07585 PF13007 Transposase C of IS166 homeodomain ALIDE_RS07585 PF13005 zinc-finger binding domain of transposase IS66 ALIDE_RS07605 PF13276 HTH-like domain ALIDE_RS07605 PF13683 Integrase core domain ALIDE_RS07610 PF01527 Transposase ALIDE_RS07630 PF01726 LexA DNA binding domain ALIDE_RS07630 PF00717 Peptidase S24-like ALIDE_RS07635 PF01527 Transposase ALIDE_RS07640 PF13276 HTH-like domain ALIDE_RS07640 PF00665 Integrase core domain ALIDE_RS07640 PF13333 Integrase core domain ALIDE_RS07650 PF09361 Phasin protein ALIDE_RS07660 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ALIDE_RS07660 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ALIDE_RS07670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALIDE_RS07670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALIDE_RS07675 PF02646 RmuC family ALIDE_RS07690 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ALIDE_RS07705 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) ALIDE_RS07715 PF00361 Proton-conducting membrane transporter ALIDE_RS07720 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALIDE_RS07725 PF00361 Proton-conducting membrane transporter ALIDE_RS07725 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter ALIDE_RS07725 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALIDE_RS07725 PF13244 Domain of unknown function (DUF4040) ALIDE_RS07735 PF18073 Rubredoxin metal binding domain ALIDE_RS07755 PF04279 Intracellular septation protein A ALIDE_RS07760 PF01641 SelR domain ALIDE_RS07765 PF02696 Uncharacterized ACR, YdiU/UPF0061 family ALIDE_RS07770 PF00501 AMP-binding enzyme ALIDE_RS07770 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS07780 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS07790 PF00005 ABC transporter ALIDE_RS07790 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS07795 PF00005 ABC transporter ALIDE_RS07800 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS07800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALIDE_RS07800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALIDE_RS07805 PF02803 Thiolase, C-terminal domain ALIDE_RS07805 PF00108 Thiolase, N-terminal domain ALIDE_RS07810 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS07815 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS07820 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS07825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS07825 PF12806 Acetyl-CoA dehydrogenase C-terminal like ALIDE_RS07825 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS07825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS07870 PF00589 Phage integrase family ALIDE_RS07870 PF13356 Arm DNA-binding domain ALIDE_RS07875 PF02321 Outer membrane efflux protein ALIDE_RS07890 PF17922 Tetracyclin repressor-like, C-terminal domain ALIDE_RS07890 PF00440 Bacterial regulatory proteins, tetR family ALIDE_RS07895 PF01625 Peptide methionine sulfoxide reductase ALIDE_RS07905 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS07905 PF00593 TonB dependent receptor ALIDE_RS07925 PF01243 Pyridoxamine 5'-phosphate oxidase ALIDE_RS07925 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ALIDE_RS07950 PF17674 HHH domain ALIDE_RS07950 PF09371 Tex-like protein N-terminal domain ALIDE_RS07950 PF16921 Tex protein YqgF-like domain ALIDE_RS07950 PF00575 S1 RNA binding domain ALIDE_RS07955 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS07970 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS07980 PF00501 AMP-binding enzyme ALIDE_RS07980 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS07985 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS07990 PF00356 Bacterial regulatory proteins, lacI family ALIDE_RS08000 PF02515 CoA-transferase family III ALIDE_RS08005 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS08010 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS08015 PF04909 Amidohydrolase ALIDE_RS08030 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALIDE_RS08035 PF07859 alpha/beta hydrolase fold ALIDE_RS08050 PF00072 Response regulator receiver domain ALIDE_RS08050 PF00196 Bacterial regulatory proteins, luxR family ALIDE_RS08055 PF00072 Response regulator receiver domain ALIDE_RS08055 PF13426 PAS domain ALIDE_RS08055 PF08448 PAS fold ALIDE_RS08055 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS08055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS08060 PF07690 Major Facilitator Superfamily ALIDE_RS08065 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALIDE_RS08075 PF02618 YceG-like family ALIDE_RS08080 PF02223 Thymidylate kinase ALIDE_RS08085 PF09115 DNA polymerase III, delta subunit, C terminal ALIDE_RS08095 PF01026 TatD related DNase ALIDE_RS08115 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS08115 PF07729 FCD domain ALIDE_RS08120 PF07690 Major Facilitator Superfamily ALIDE_RS08125 PF03746 LamB/YcsF family ALIDE_RS08130 PF07286 Protein of unknown function (DUF1445) ALIDE_RS08135 PF02682 Carboxyltransferase domain, subdomain C and D ALIDE_RS08140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS08140 PF02785 Biotin carboxylase C-terminal domain ALIDE_RS08140 PF00289 Biotin carboxylase, N-terminal domain ALIDE_RS08140 PF00364 Biotin-requiring enzyme ALIDE_RS08145 PF00005 ABC transporter ALIDE_RS08145 PF00664 ABC transporter transmembrane region ALIDE_RS08150 PF04052 TolB amino-terminal domain ALIDE_RS08150 PF07676 WD40-like Beta Propeller Repeat ALIDE_RS08155 PF00691 OmpA family ALIDE_RS08160 PF13174 Tetratricopeptide repeat ALIDE_RS08160 PF16331 TolA binding protein trimerisation ALIDE_RS08165 PF00899 ThiF family ALIDE_RS08175 PF02899 Phage integrase, N-terminal SAM-like domain ALIDE_RS08175 PF00589 Phage integrase family ALIDE_RS08245 PF00565 Staphylococcal nuclease homologue ALIDE_RS08285 PF03796 DnaB-like helicase C terminal domain ALIDE_RS08285 PF00772 DnaB-like helicase N terminal domain ALIDE_RS08385 PF02481 DNA recombination-mediator protein A ALIDE_RS08500 PF00589 Phage integrase family ALIDE_RS08500 PF12167 Arm DNA-binding domain ALIDE_RS08510 PF05598 Transposase domain (DUF772) ALIDE_RS08510 PF01609 Transposase DDE domain ALIDE_RS08515 PF01695 IstB-like ATP binding protein ALIDE_RS08520 PF00665 Integrase core domain ALIDE_RS08535 PF13356 Arm DNA-binding domain ALIDE_RS08535 PF00589 Phage integrase family ALIDE_RS08545 PF01464 Transglycosylase SLT domain ALIDE_RS08545 PF01476 LysM domain ALIDE_RS08550 PF16123 Hydroxyacylglutathione hydrolase C-terminus ALIDE_RS08550 PF00753 Metallo-beta-lactamase superfamily ALIDE_RS08555 PF08241 Methyltransferase domain ALIDE_RS08560 PF00075 RNase H ALIDE_RS08565 PF00155 Aminotransferase class I and II ALIDE_RS08570 PF03737 Aldolase/RraA ALIDE_RS08575 PF03737 Aldolase/RraA ALIDE_RS08575 PF00180 Isocitrate/isopropylmalate dehydrogenase ALIDE_RS08580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS08580 PF03466 LysR substrate binding domain ALIDE_RS08585 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS08595 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS08610 PF00994 Probable molybdopterin binding domain ALIDE_RS08610 PF03454 MoeA C-terminal region (domain IV) ALIDE_RS08610 PF03453 MoeA N-terminal region (domain I and II) ALIDE_RS08620 PF12804 MobA-like NTP transferase domain ALIDE_RS08625 PF04055 Radical SAM superfamily ALIDE_RS08625 PF06463 Molybdenum Cofactor Synthesis C ALIDE_RS08640 PF00171 Aldehyde dehydrogenase family ALIDE_RS08645 PF03030 Inorganic H+ pyrophosphatase ALIDE_RS08650 PF00719 Inorganic pyrophosphatase ALIDE_RS08655 PF01584 CheW-like domain ALIDE_RS08660 PF02203 Tar ligand binding domain homologue ALIDE_RS08660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS08660 PF00672 HAMP domain ALIDE_RS08670 PF00593 TonB dependent receptor ALIDE_RS08670 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS08675 PF00795 Carbon-nitrogen hydrolase ALIDE_RS08675 PF02540 NAD synthase ALIDE_RS08680 PF00543 Nitrogen regulatory protein P-II ALIDE_RS08685 PF03641 Possible lysine decarboxylase ALIDE_RS08690 PF01219 Prokaryotic diacylglycerol kinase ALIDE_RS08710 PF08281 Sigma-70, region 4 ALIDE_RS08710 PF04542 Sigma-70 region 2 ALIDE_RS08715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALIDE_RS08715 PF00205 Thiamine pyrophosphate enzyme, central domain ALIDE_RS08715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALIDE_RS08720 PF10369 Small subunit of acetolactate synthase ALIDE_RS08725 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ALIDE_RS08725 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALIDE_RS08730 PF01066 CDP-alcohol phosphatidyltransferase ALIDE_RS08735 PF13417 Glutathione S-transferase, N-terminal domain ALIDE_RS08745 PF07690 Major Facilitator Superfamily ALIDE_RS08755 PF03466 LysR substrate binding domain ALIDE_RS08755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS08760 PF00682 HMGL-like ALIDE_RS08760 PF08502 LeuA allosteric (dimerisation) domain ALIDE_RS08765 PF08502 LeuA allosteric (dimerisation) domain ALIDE_RS08765 PF00682 HMGL-like ALIDE_RS08770 PF00768 D-alanyl-D-alanine carboxypeptidase ALIDE_RS08775 PF09339 IclR helix-turn-helix domain ALIDE_RS08775 PF01614 Bacterial transcriptional regulator ALIDE_RS08780 PF00474 Sodium:solute symporter family ALIDE_RS08785 PF01619 Proline dehydrogenase ALIDE_RS08785 PF00171 Aldehyde dehydrogenase family ALIDE_RS08785 PF14850 DNA-binding domain of Proline dehydrogenase ALIDE_RS08785 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ALIDE_RS08790 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS08790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS08790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS08800 PF13545 Crp-like helix-turn-helix domain ALIDE_RS08800 PF00027 Cyclic nucleotide-binding domain ALIDE_RS08805 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS08810 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ALIDE_RS08810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALIDE_RS08810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALIDE_RS08820 PF02581 Thiamine monophosphate synthase ALIDE_RS08825 PF05690 Thiazole biosynthesis protein ThiG ALIDE_RS08835 PF01266 FAD dependent oxidoreductase ALIDE_RS08840 PF08543 Phosphomethylpyrimidine kinase ALIDE_RS08855 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS08860 PF11953 Domain of unknown function (DUF3470) ALIDE_RS08860 PF00037 4Fe-4S binding domain ALIDE_RS08865 PF00009 Elongation factor Tu GTP binding domain ALIDE_RS08870 PF01507 Phosphoadenosine phosphosulfate reductase family ALIDE_RS08875 PF01507 Phosphoadenosine phosphosulfate reductase family ALIDE_RS08890 PF01925 Sulfite exporter TauE/SafE ALIDE_RS08895 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ALIDE_RS08895 PF01266 FAD dependent oxidoreductase ALIDE_RS08900 PF03458 UPF0126 domain ALIDE_RS08905 PF04362 Bacterial Fe(2+) trafficking ALIDE_RS08925 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS08925 PF00501 AMP-binding enzyme ALIDE_RS08930 PF02803 Thiolase, C-terminal domain ALIDE_RS08930 PF00108 Thiolase, N-terminal domain ALIDE_RS08945 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS08955 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS08955 PF00005 ABC transporter ALIDE_RS08960 PF00005 ABC transporter ALIDE_RS08970 PF00501 AMP-binding enzyme ALIDE_RS08970 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS08995 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS08995 PF01464 Transglycosylase SLT domain ALIDE_RS09005 PF01527 Transposase ALIDE_RS09010 PF13276 HTH-like domain ALIDE_RS09010 PF13333 Integrase core domain ALIDE_RS09010 PF00665 Integrase core domain ALIDE_RS09030 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS09030 PF00403 Heavy-metal-associated domain ALIDE_RS09030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALIDE_RS09035 PF00403 Heavy-metal-associated domain ALIDE_RS09040 PF02411 MerT mercuric transport protein ALIDE_RS09045 PF00376 MerR family regulatory protein ALIDE_RS09045 PF09278 MerR, DNA binding ALIDE_RS09085 PF13276 HTH-like domain ALIDE_RS09085 PF00665 Integrase core domain ALIDE_RS09085 PF13333 Integrase core domain ALIDE_RS09090 PF01527 Transposase ALIDE_RS09100 PF00589 Phage integrase family ALIDE_RS09100 PF14659 Phage integrase, N-terminal SAM-like domain ALIDE_RS09100 PF13356 Arm DNA-binding domain ALIDE_RS09110 PF02082 Transcriptional regulator ALIDE_RS09125 PF02666 Phosphatidylserine decarboxylase ALIDE_RS09130 PF00571 CBS domain ALIDE_RS09130 PF00005 ABC transporter ALIDE_RS09135 PF01176 Translation initiation factor 1A / IF-1 ALIDE_RS09145 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS09155 PF00216 Bacterial DNA-binding protein ALIDE_RS09160 PF00575 S1 RNA binding domain ALIDE_RS09165 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALIDE_RS09170 PF02153 Prephenate dehydrogenase ALIDE_RS09175 PF00800 Prephenate dehydratase ALIDE_RS09175 PF01817 Chorismate mutase type II ALIDE_RS09175 PF01842 ACT domain ALIDE_RS09180 PF00266 Aminotransferase class-V ALIDE_RS09185 PF00521 DNA gyrase/topoisomerase IV, subunit A ALIDE_RS09185 PF03989 DNA gyrase C-terminal domain, beta-propeller ALIDE_RS09190 PF00691 OmpA family ALIDE_RS09200 PF13419 Haloacid dehalogenase-like hydrolase ALIDE_RS09210 PF00717 Peptidase S24-like ALIDE_RS09215 PF11799 impB/mucB/samB family C-terminal domain ALIDE_RS09215 PF00817 impB/mucB/samB family ALIDE_RS09215 PF13438 Domain of unknown function (DUF4113) ALIDE_RS09230 PF00239 Resolvase, N terminal domain ALIDE_RS09230 PF02796 Helix-turn-helix domain of resolvase ALIDE_RS09260 PF05378 Hydantoinase/oxoprolinase N-terminal region ALIDE_RS09260 PF01968 Hydantoinase/oxoprolinase ALIDE_RS09275 PF13005 zinc-finger binding domain of transposase IS66 ALIDE_RS09275 PF13817 IS66 C-terminal element ALIDE_RS09275 PF03050 Transposase IS66 family ALIDE_RS09275 PF13007 Transposase C of IS166 homeodomain ALIDE_RS09280 PF05378 Hydantoinase/oxoprolinase N-terminal region ALIDE_RS09280 PF01968 Hydantoinase/oxoprolinase ALIDE_RS09285 PF13333 Integrase core domain ALIDE_RS09285 PF00665 Integrase core domain ALIDE_RS09285 PF13276 HTH-like domain ALIDE_RS09290 PF01527 Transposase ALIDE_RS09295 PF01266 FAD dependent oxidoreductase ALIDE_RS09300 PF03466 LysR substrate binding domain ALIDE_RS09300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS09305 PF04960 Glutaminase ALIDE_RS09310 PF01546 Peptidase family M20/M25/M40 ALIDE_RS09310 PF07687 Peptidase dimerisation domain ALIDE_RS09315 PF07690 Major Facilitator Superfamily ALIDE_RS09320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS09320 PF03466 LysR substrate binding domain ALIDE_RS09355 PF00107 Zinc-binding dehydrogenase ALIDE_RS09355 PF16884 N-terminal domain of oxidoreductase ALIDE_RS09370 PF07690 Major Facilitator Superfamily ALIDE_RS09375 PF03441 FAD binding domain of DNA photolyase ALIDE_RS09375 PF00875 DNA photolyase ALIDE_RS09385 PF08267 Cobalamin-independent synthase, N-terminal domain ALIDE_RS09385 PF01717 Cobalamin-independent synthase, Catalytic domain ALIDE_RS09390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS09390 PF03466 LysR substrate binding domain ALIDE_RS09415 PF04303 PrpF protein ALIDE_RS09420 PF00694 Aconitase C-terminal domain ALIDE_RS09420 PF00330 Aconitase family (aconitate hydratase) ALIDE_RS09425 PF00285 Citrate synthase, C-terminal domain ALIDE_RS09435 PF01381 Helix-turn-helix ALIDE_RS09435 PF06114 IrrE N-terminal-like domain ALIDE_RS09435 PF09856 Predicted transcriptional regulator (DUF2083) ALIDE_RS09445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALIDE_RS09455 PF01479 S4 domain ALIDE_RS09460 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS09460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS09465 PF00072 Response regulator receiver domain ALIDE_RS09465 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS09470 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS09480 PF01970 Tripartite tricarboxylate transporter TctA family ALIDE_RS09485 PF10605 3HB-oligomer hydrolase (3HBOH) ALIDE_RS09505 PF00762 Ferrochelatase ALIDE_RS09510 PF13419 Haloacid dehalogenase-like hydrolase ALIDE_RS09515 PF00690 Cation transporter/ATPase, N-terminus ALIDE_RS09515 PF00689 Cation transporting ATPase, C-terminus ALIDE_RS09520 PF12697 Alpha/beta hydrolase family ALIDE_RS09525 PF01053 Cys/Met metabolism PLP-dependent enzyme ALIDE_RS09535 PF01264 Chorismate synthase ALIDE_RS09540 PF03477 ATP cone domain ALIDE_RS09545 PF00464 Serine hydroxymethyltransferase ALIDE_RS09550 PF01464 Transglycosylase SLT domain ALIDE_RS09550 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ALIDE_RS09575 PF08206 Ribonuclease B OB domain ALIDE_RS09575 PF00773 RNB domain ALIDE_RS09575 PF00575 S1 RNA binding domain ALIDE_RS09575 PF08461 Ribonuclease R winged-helix domain ALIDE_RS09575 PF17876 Cold shock domain ALIDE_RS09590 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS09590 PF00034 Cytochrome c ALIDE_RS09590 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALIDE_RS09595 PF00085 Thioredoxin ALIDE_RS09600 PF02576 RimP N-terminal domain ALIDE_RS09605 PF00575 S1 RNA binding domain ALIDE_RS09605 PF13184 NusA-like KH domain ALIDE_RS09605 PF08529 NusA N-terminal domain ALIDE_RS09610 PF00009 Elongation factor Tu GTP binding domain ALIDE_RS09610 PF04760 Translation initiation factor IF-2, N-terminal region ALIDE_RS09610 PF08364 Bacterial translation initiation factor IF-2 associated region ALIDE_RS09610 PF11987 Translation-initiation factor 2 ALIDE_RS09615 PF02033 Ribosome-binding factor A ALIDE_RS09620 PF16198 tRNA pseudouridylate synthase B C-terminal domain ALIDE_RS09620 PF01509 TruB family pseudouridylate synthase (N terminal domain) ALIDE_RS09625 PF03144 Elongation factor Tu domain 2 ALIDE_RS09625 PF00009 Elongation factor Tu GTP binding domain ALIDE_RS09625 PF00679 Elongation factor G C-terminus ALIDE_RS09635 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS09645 PF04542 Sigma-70 region 2 ALIDE_RS09645 PF08281 Sigma-70, region 4 ALIDE_RS09655 PF01668 SmpB protein ALIDE_RS09660 PF03364 Polyketide cyclase / dehydrase and lipid transport ALIDE_RS09665 PF03658 RnfH family Ubiquitin ALIDE_RS09675 PF00571 CBS domain ALIDE_RS09675 PF00478 IMP dehydrogenase / GMP reductase domain ALIDE_RS09680 PF00958 GMP synthase C terminal domain ALIDE_RS09680 PF02540 NAD synthase ALIDE_RS09680 PF00117 Glutamine amidotransferase class-I ALIDE_RS09685 PF00589 Phage integrase family ALIDE_RS09685 PF13356 Arm DNA-binding domain ALIDE_RS09690 PF00285 Citrate synthase, C-terminal domain ALIDE_RS09695 PF03937 Flavinator of succinate dehydrogenase ALIDE_RS09700 PF13085 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS09705 PF00890 FAD binding domain ALIDE_RS09705 PF02910 Fumarate reductase flavoprotein C-term ALIDE_RS09710 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALIDE_RS09715 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALIDE_RS09720 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS09720 PF07702 UTRA domain ALIDE_RS09725 PF00056 lactate/malate dehydrogenase, NAD binding domain ALIDE_RS09725 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ALIDE_RS09740 PF11791 Aconitate B N-terminal domain ALIDE_RS09740 PF06434 Aconitate hydratase 2 N-terminus ALIDE_RS09740 PF00330 Aconitase family (aconitate hydratase) ALIDE_RS09750 PF03466 LysR substrate binding domain ALIDE_RS09750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS09755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS09755 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS09755 PF18158 Adaptive response protein AidB N-terminal domain ALIDE_RS09760 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS09765 PF02515 CoA-transferase family III ALIDE_RS09770 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS09770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALIDE_RS09775 PF01799 [2Fe-2S] binding domain ALIDE_RS09775 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS09780 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain ALIDE_RS09780 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALIDE_RS09785 PF03450 CO dehydrogenase flavoprotein C-terminal domain ALIDE_RS09785 PF00941 FAD binding domain in molybdopterin dehydrogenase ALIDE_RS09790 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALIDE_RS09790 PF05362 Lon protease (S16) C-terminal proteolytic domain ALIDE_RS09790 PF00004 ATPase family associated with various cellular activities (AAA) ALIDE_RS09805 PF13478 XdhC Rossmann domain ALIDE_RS09805 PF02625 XdhC and CoxI family ALIDE_RS09810 PF00132 Bacterial transferase hexapeptide (six repeats) ALIDE_RS09810 PF12804 MobA-like NTP transferase domain ALIDE_RS09825 PF01593 Flavin containing amine oxidoreductase ALIDE_RS09835 PF00535 Glycosyl transferase family 2 ALIDE_RS09840 PF16325 Peptidase family U32 C-terminal domain ALIDE_RS09840 PF01136 Peptidase family U32 ALIDE_RS09860 PF00072 Response regulator receiver domain ALIDE_RS09865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS09865 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS09875 PF03626 Prokaryotic Cytochrome C oxidase subunit IV ALIDE_RS09880 PF00510 Cytochrome c oxidase subunit III ALIDE_RS09885 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALIDE_RS09890 PF06481 COX Aromatic Rich Motif ALIDE_RS09890 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALIDE_RS09895 PF00083 Sugar (and other) transporter ALIDE_RS09895 PF07690 Major Facilitator Superfamily ALIDE_RS09905 PF02472 Biopolymer transport protein ExbD/TolR ALIDE_RS09910 PF01618 MotA/TolQ/ExbB proton channel family ALIDE_RS09915 PF03061 Thioesterase superfamily ALIDE_RS09920 PF00155 Aminotransferase class I and II ALIDE_RS09925 PF01029 NusB family ALIDE_RS09930 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALIDE_RS09935 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ALIDE_RS09935 PF00925 GTP cyclohydrolase II ALIDE_RS09950 PF00106 short chain dehydrogenase ALIDE_RS09955 PF04262 Glutamate-cysteine ligase ALIDE_RS09960 PF12805 FUSC-like inner membrane protein yccS ALIDE_RS09970 PF01042 Endoribonuclease L-PSP ALIDE_RS09975 PF04324 BFD-like [2Fe-2S] binding domain ALIDE_RS09975 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS09985 PF01266 FAD dependent oxidoreductase ALIDE_RS09990 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS09995 PF03466 LysR substrate binding domain ALIDE_RS09995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS10000 PF01926 50S ribosome-binding GTPase ALIDE_RS10010 PF00849 RNA pseudouridylate synthase ALIDE_RS10030 PF00565 Staphylococcal nuclease homologue ALIDE_RS10035 PF00892 EamA-like transporter family ALIDE_RS10040 PF00849 RNA pseudouridylate synthase ALIDE_RS10050 PF10415 Fumarase C C-terminus ALIDE_RS10050 PF00206 Lyase ALIDE_RS10065 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ALIDE_RS10065 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALIDE_RS10075 PF01220 Dehydroquinase class II ALIDE_RS10085 PF00472 RF-1 domain ALIDE_RS10090 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ALIDE_RS10095 PF02230 Phospholipase/Carboxylesterase ALIDE_RS10105 PF01037 Lrp/AsnC ligand binding domain ALIDE_RS10110 PF17831 Pyruvate dehydrogenase E1 component middle domain ALIDE_RS10110 PF00456 Transketolase, thiamine diphosphate binding domain ALIDE_RS10115 PF01425 Amidase ALIDE_RS10120 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS10135 PF00216 Bacterial DNA-binding protein ALIDE_RS10285 PF06074 Protein of unknown function (DUF935) ALIDE_RS10290 PF04233 Phage Mu protein F like protein ALIDE_RS10310 PF10124 Mu-like prophage major head subunit gpT ALIDE_RS10405 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS10410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS10410 PF03466 LysR substrate binding domain ALIDE_RS10415 PF07729 FCD domain ALIDE_RS10415 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS10420 PF07690 Major Facilitator Superfamily ALIDE_RS10425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALIDE_RS10425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALIDE_RS10430 PF01370 NAD dependent epimerase/dehydratase family ALIDE_RS10435 PF07005 Sugar-binding N-terminal domain ALIDE_RS10435 PF17042 Nucleotide-binding C-terminal domain ALIDE_RS10440 PF00596 Class II Aldolase and Adducin N-terminal domain ALIDE_RS10445 PF01261 Xylose isomerase-like TIM barrel ALIDE_RS10450 PF06167 Glucose-regulated metallo-peptidase M90 ALIDE_RS10455 PF00149 Calcineurin-like phosphoesterase ALIDE_RS10460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALIDE_RS10465 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALIDE_RS10480 PF09190 DALR domain ALIDE_RS10480 PF01406 tRNA synthetases class I (C) catalytic domain ALIDE_RS10490 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ALIDE_RS10495 PF01171 PP-loop family ALIDE_RS10495 PF09179 TilS substrate binding domain ALIDE_RS10500 PF13840 ACT domain ALIDE_RS10500 PF01842 ACT domain ALIDE_RS10500 PF00696 Amino acid kinase family ALIDE_RS10505 PF00654 Voltage gated chloride channel ALIDE_RS10515 PF00440 Bacterial regulatory proteins, tetR family ALIDE_RS10520 PF13276 HTH-like domain ALIDE_RS10520 PF13333 Integrase core domain ALIDE_RS10520 PF00665 Integrase core domain ALIDE_RS10525 PF01527 Transposase ALIDE_RS10545 PF00005 ABC transporter ALIDE_RS10550 PF13406 Transglycosylase SLT domain ALIDE_RS10555 PF08411 Exonuclease C-terminal ALIDE_RS10555 PF00929 Exonuclease ALIDE_RS10560 PF02146 Sir2 family ALIDE_RS10565 PF01594 AI-2E family transporter ALIDE_RS10570 PF13302 Acetyltransferase (GNAT) domain ALIDE_RS10580 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS10585 PF01709 Transcriptional regulator ALIDE_RS10595 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALIDE_RS10595 PF12801 4Fe-4S binding domain ALIDE_RS10595 PF13746 4Fe-4S dicluster domain ALIDE_RS10600 PF01654 Cytochrome bd terminal oxidase subunit I ALIDE_RS10605 PF02322 Cytochrome bd terminal oxidase subunit II ALIDE_RS10615 PF04172 LrgB-like family ALIDE_RS10625 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS10625 PF00155 Aminotransferase class I and II ALIDE_RS10630 PF02798 Glutathione S-transferase, N-terminal domain ALIDE_RS10630 PF00043 Glutathione S-transferase, C-terminal domain ALIDE_RS10635 PF05872 Bacterial protein of unknown function (DUF853) ALIDE_RS10640 PF01709 Transcriptional regulator ALIDE_RS10645 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ALIDE_RS10645 PF02843 Phosphoribosylglycinamide synthetase, C domain ALIDE_RS10645 PF02844 Phosphoribosylglycinamide synthetase, N domain ALIDE_RS10650 PF01218 Coproporphyrinogen III oxidase ALIDE_RS10660 PF02590 Predicted SPOUT methyltransferase ALIDE_RS10665 PF02545 Maf-like protein ALIDE_RS10680 PF13186 Iron-sulfur cluster-binding domain ALIDE_RS10680 PF04055 Radical SAM superfamily ALIDE_RS10685 PF17805 AsnC-like ligand binding domain ALIDE_RS10690 PF17805 AsnC-like ligand binding domain ALIDE_RS10690 PF13404 AsnC-type helix-turn-helix domain ALIDE_RS10700 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS10705 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS10710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALIDE_RS10710 PF10414 Sirohaem synthase dimerisation region ALIDE_RS10710 PF14824 Sirohaem biosynthesis protein central ALIDE_RS10715 PF10150 Ribonuclease E/G family ALIDE_RS10715 PF00575 S1 RNA binding domain ALIDE_RS10720 PF05230 MASE2 domain ALIDE_RS10720 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS10725 PF03466 LysR substrate binding domain ALIDE_RS10725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS10730 PF00155 Aminotransferase class I and II ALIDE_RS10735 PF03466 LysR substrate binding domain ALIDE_RS10735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS10755 PF02789 Cytosol aminopeptidase family, N-terminal domain ALIDE_RS10755 PF00883 Cytosol aminopeptidase family, catalytic domain ALIDE_RS10770 PF13458 Periplasmic binding protein ALIDE_RS10775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALIDE_RS10775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALIDE_RS10805 PF00582 Universal stress protein family ALIDE_RS10810 PF01814 Hemerythrin HHE cation binding domain ALIDE_RS10815 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS10820 PF02803 Thiolase, C-terminal domain ALIDE_RS10820 PF00108 Thiolase, N-terminal domain ALIDE_RS10825 PF00106 short chain dehydrogenase ALIDE_RS10830 PF00849 RNA pseudouridylate synthase ALIDE_RS10835 PF00072 Response regulator receiver domain ALIDE_RS10835 PF13188 PAS domain ALIDE_RS10835 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS10835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS10835 PF08448 PAS fold ALIDE_RS10840 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ALIDE_RS10840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALIDE_RS10845 PF00196 Bacterial regulatory proteins, luxR family ALIDE_RS10845 PF00072 Response regulator receiver domain ALIDE_RS10860 PF08534 Redoxin ALIDE_RS10885 PF04542 Sigma-70 region 2 ALIDE_RS10885 PF08281 Sigma-70, region 4 ALIDE_RS10895 PF05958 tRNA (Uracil-5-)-methyltransferase ALIDE_RS10900 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS10905 PF09186 Domain of unknown function (DUF1949) ALIDE_RS10905 PF01205 Uncharacterized protein family UPF0029 ALIDE_RS10910 PF00127 Copper binding proteins, plastocyanin/azurin family ALIDE_RS10915 PF11842 Domain of unknown function (DUF3362) ALIDE_RS10915 PF08497 Radical SAM N-terminal ALIDE_RS10915 PF04055 Radical SAM superfamily ALIDE_RS10920 PF00155 Aminotransferase class I and II ALIDE_RS10925 PF00271 Helicase conserved C-terminal domain ALIDE_RS10925 PF04851 Type III restriction enzyme, res subunit ALIDE_RS10925 PF02151 UvrB/uvrC motif ALIDE_RS10925 PF12344 Ultra-violet resistance protein B ALIDE_RS10925 PF17757 UvrB interaction domain ALIDE_RS10930 PF02082 Transcriptional regulator ALIDE_RS10935 PF00266 Aminotransferase class-V ALIDE_RS10940 PF01592 NifU-like N terminal domain ALIDE_RS10945 PF01521 Iron-sulphur cluster biosynthesis ALIDE_RS10950 PF07743 HSCB C-terminal oligomerisation domain ALIDE_RS10955 PF00012 Hsp70 protein ALIDE_RS10960 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS10965 PF00929 Exonuclease ALIDE_RS10980 PF01266 FAD dependent oxidoreductase ALIDE_RS11000 PF01180 Dihydroorotate dehydrogenase ALIDE_RS11005 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ALIDE_RS11015 PF01432 Peptidase family M3 ALIDE_RS11020 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ALIDE_RS11020 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ALIDE_RS11025 PF00072 Response regulator receiver domain ALIDE_RS11025 PF00196 Bacterial regulatory proteins, luxR family ALIDE_RS11030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS11030 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS11030 PF00989 PAS fold ALIDE_RS11035 PF00456 Transketolase, thiamine diphosphate binding domain ALIDE_RS11035 PF17831 Pyruvate dehydrogenase E1 component middle domain ALIDE_RS11040 PF02817 e3 binding domain ALIDE_RS11040 PF00364 Biotin-requiring enzyme ALIDE_RS11040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALIDE_RS11045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALIDE_RS11045 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS11065 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS11075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS11075 PF03466 LysR substrate binding domain ALIDE_RS11080 PF03737 Aldolase/RraA ALIDE_RS11085 PF03972 MmgE/PrpD family ALIDE_RS11090 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS11105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALIDE_RS11105 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALIDE_RS11125 PF00877 NlpC/P60 family ALIDE_RS11130 PF00324 Amino acid permease ALIDE_RS11135 PF07690 Major Facilitator Superfamily ALIDE_RS11140 PF00563 EAL domain ALIDE_RS11140 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS11140 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS11145 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ALIDE_RS11155 PF06470 SMC proteins Flexible Hinge Domain ALIDE_RS11155 PF02463 RecF/RecN/SMC N terminal domain ALIDE_RS11165 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ALIDE_RS11165 PF12826 Helix-hairpin-helix motif ALIDE_RS11165 PF01653 NAD-dependent DNA ligase adenylation domain ALIDE_RS11165 PF00533 BRCA1 C Terminus (BRCT) domain ALIDE_RS11165 PF03120 NAD-dependent DNA ligase OB-fold domain ALIDE_RS11170 PF01734 Patatin-like phospholipase ALIDE_RS11175 PF00905 Penicillin binding protein transpeptidase domain ALIDE_RS11175 PF00912 Transglycosylase ALIDE_RS11175 PF17092 Penicillin-binding protein OB-like domain ALIDE_RS11180 PF07690 Major Facilitator Superfamily ALIDE_RS11190 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALIDE_RS11195 PF13417 Glutathione S-transferase, N-terminal domain ALIDE_RS11200 PF02578 Multi-copper polyphenol oxidoreductase laccase ALIDE_RS11210 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ALIDE_RS11215 PF02803 Thiolase, C-terminal domain ALIDE_RS11215 PF00108 Thiolase, N-terminal domain ALIDE_RS11220 PF00106 short chain dehydrogenase ALIDE_RS11225 PF12848 ABC transporter ALIDE_RS11225 PF00005 ABC transporter ALIDE_RS11230 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS11235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS11235 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS11235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS11240 PF00501 AMP-binding enzyme ALIDE_RS11240 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS11245 PF03466 LysR substrate binding domain ALIDE_RS11245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS11250 PF05175 Methyltransferase small domain ALIDE_RS11255 PF01546 Peptidase family M20/M25/M40 ALIDE_RS11255 PF07687 Peptidase dimerisation domain ALIDE_RS11260 PF00437 Type II/IV secretion system protein ALIDE_RS11265 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ALIDE_RS11265 PF14602 Hexapeptide repeat of succinyl-transferase ALIDE_RS11270 PF00155 Aminotransferase class I and II ALIDE_RS11275 PF04060 Putative Fe-S cluster ALIDE_RS11290 PF01207 Dihydrouridine synthase (Dus) ALIDE_RS11300 PF00440 Bacterial regulatory proteins, tetR family ALIDE_RS11310 PF00501 AMP-binding enzyme ALIDE_RS11315 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS11315 PF07729 FCD domain ALIDE_RS11320 PF00682 HMGL-like ALIDE_RS11325 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS11330 PF02515 CoA-transferase family III ALIDE_RS11335 PF06114 IrrE N-terminal-like domain ALIDE_RS11335 PF01381 Helix-turn-helix ALIDE_RS11335 PF09856 Predicted transcriptional regulator (DUF2083) ALIDE_RS11340 PF01642 Methylmalonyl-CoA mutase ALIDE_RS11340 PF02310 B12 binding domain ALIDE_RS11350 PF01039 Carboxyl transferase domain ALIDE_RS11355 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS11355 PF00289 Biotin carboxylase, N-terminal domain ALIDE_RS11355 PF02785 Biotin carboxylase C-terminal domain ALIDE_RS11355 PF00364 Biotin-requiring enzyme ALIDE_RS11355 PF18140 Propionyl-coenzyme A carboxylase BT domain ALIDE_RS11365 PF04055 Radical SAM superfamily ALIDE_RS11365 PF06968 Biotin and Thiamin Synthesis associated domain ALIDE_RS11370 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS11375 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS11375 PF00072 Response regulator receiver domain ALIDE_RS11380 PF08521 Two-component sensor kinase N-terminal ALIDE_RS11380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS11380 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS11395 PF00581 Rhodanese-like domain ALIDE_RS11410 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS11415 PF02321 Outer membrane efflux protein ALIDE_RS11420 PF00873 AcrB/AcrD/AcrF family ALIDE_RS11430 PF01022 Bacterial regulatory protein, arsR family ALIDE_RS11440 PF03328 HpcH/HpaI aldolase/citrate lyase family ALIDE_RS11450 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS11455 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS11460 PF00356 Bacterial regulatory proteins, lacI family ALIDE_RS11470 PF00815 Histidinol dehydrogenase ALIDE_RS11490 PF00884 Sulfatase ALIDE_RS11490 PF08019 Phosphoethanolamine transferase EptA/EptB ALIDE_RS11500 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS11500 PF00072 Response regulator receiver domain ALIDE_RS11505 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS11505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS11510 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS11515 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS11520 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS11520 PF00107 Zinc-binding dehydrogenase ALIDE_RS11525 PF02515 CoA-transferase family III ALIDE_RS11530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS11530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS11530 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS11540 PF02515 CoA-transferase family III ALIDE_RS11560 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS11565 PF00005 ABC transporter ALIDE_RS11570 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS11570 PF01590 GAF domain ALIDE_RS11570 PF00158 Sigma-54 interaction domain ALIDE_RS11575 PF00561 alpha/beta hydrolase fold ALIDE_RS11575 PF00364 Biotin-requiring enzyme ALIDE_RS11580 PF05199 GMC oxidoreductase ALIDE_RS11580 PF00732 GMC oxidoreductase ALIDE_RS11590 PF03099 Biotin/lipoate A/B protein ligase family ALIDE_RS11595 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALIDE_RS11595 PF00364 Biotin-requiring enzyme ALIDE_RS11595 PF02817 e3 binding domain ALIDE_RS11600 PF02779 Transketolase, pyrimidine binding domain ALIDE_RS11600 PF02780 Transketolase, C-terminal domain ALIDE_RS11600 PF00364 Biotin-requiring enzyme ALIDE_RS11605 PF02779 Transketolase, pyrimidine binding domain ALIDE_RS11605 PF02780 Transketolase, C-terminal domain ALIDE_RS11610 PF00676 Dehydrogenase E1 component ALIDE_RS11615 PF01037 Lrp/AsnC ligand binding domain ALIDE_RS11620 PF03480 Bacterial extracellular solute-binding protein, family 7 ALIDE_RS11630 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALIDE_RS11630 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALIDE_RS11635 PF00753 Metallo-beta-lactamase superfamily ALIDE_RS11635 PF12706 Beta-lactamase superfamily domain ALIDE_RS11640 PF08669 Glycine cleavage T-protein C-terminal barrel domain ALIDE_RS11640 PF01571 Aminomethyltransferase folate-binding domain ALIDE_RS11645 PF01597 Glycine cleavage H-protein ALIDE_RS11650 PF02347 Glycine cleavage system P-protein ALIDE_RS11655 PF02583 Metal-sensitive transcriptional repressor ALIDE_RS11660 PF00107 Zinc-binding dehydrogenase ALIDE_RS11660 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS11665 PF00756 Putative esterase ALIDE_RS11680 PF04055 Radical SAM superfamily ALIDE_RS11685 PF01272 Transcription elongation factor, GreA/GreB, C-term ALIDE_RS11685 PF14760 Rnk N-terminus ALIDE_RS11700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS11700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS11700 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS11700 PF12806 Acetyl-CoA dehydrogenase C-terminal like ALIDE_RS11705 PF01012 Electron transfer flavoprotein domain ALIDE_RS11705 PF00766 Electron transfer flavoprotein FAD-binding domain ALIDE_RS11710 PF01012 Electron transfer flavoprotein domain ALIDE_RS11715 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS11720 PF00850 Histone deacetylase domain ALIDE_RS11725 PF17863 AAA lid domain ALIDE_RS11725 PF07726 ATPase family associated with various cellular activities (AAA) ALIDE_RS11735 PF11992 Domain of unknown function (DUF3488) ALIDE_RS11735 PF01841 Transglutaminase-like superfamily ALIDE_RS11735 PF13559 Domain of unknown function (DUF4129) ALIDE_RS11740 PF13406 Transglycosylase SLT domain ALIDE_RS11745 PF02780 Transketolase, C-terminal domain ALIDE_RS11745 PF02779 Transketolase, pyrimidine binding domain ALIDE_RS11750 PF00456 Transketolase, thiamine diphosphate binding domain ALIDE_RS11755 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALIDE_RS11765 PF03480 Bacterial extracellular solute-binding protein, family 7 ALIDE_RS11765 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALIDE_RS11775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS11775 PF03466 LysR substrate binding domain ALIDE_RS11780 PF02780 Transketolase, C-terminal domain ALIDE_RS11780 PF00456 Transketolase, thiamine diphosphate binding domain ALIDE_RS11780 PF02779 Transketolase, pyrimidine binding domain ALIDE_RS11785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALIDE_RS11785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALIDE_RS11790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS11790 PF03466 LysR substrate binding domain ALIDE_RS11795 PF03601 Conserved hypothetical protein 698 ALIDE_RS11800 PF13458 Periplasmic binding protein ALIDE_RS11810 PF12704 MacB-like periplasmic core domain ALIDE_RS11810 PF02687 FtsX-like permease family ALIDE_RS11810 PF00005 ABC transporter ALIDE_RS11815 PF00005 ABC transporter ALIDE_RS11815 PF02687 FtsX-like permease family ALIDE_RS11815 PF12704 MacB-like periplasmic core domain ALIDE_RS11820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALIDE_RS11825 PF02321 Outer membrane efflux protein ALIDE_RS11830 PF00814 Glycoprotease family ALIDE_RS11835 PF01743 Poly A polymerase head domain ALIDE_RS11835 PF00571 CBS domain ALIDE_RS11845 PF00529 HlyD membrane-fusion protein of T1SS ALIDE_RS11845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALIDE_RS11850 PF00873 AcrB/AcrD/AcrF family ALIDE_RS11855 PF02321 Outer membrane efflux protein ALIDE_RS11860 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALIDE_RS11860 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS11860 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALIDE_RS11860 PF04324 BFD-like [2Fe-2S] binding domain ALIDE_RS11860 PF18267 Rubredoxin NAD+ reductase C-terminal domain ALIDE_RS11865 PF00355 Rieske [2Fe-2S] domain ALIDE_RS11870 PF00384 Molybdopterin oxidoreductase ALIDE_RS11870 PF01568 Molydopterin dinucleotide binding domain ALIDE_RS11870 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALIDE_RS11870 PF04324 BFD-like [2Fe-2S] binding domain ALIDE_RS11875 PF07690 Major Facilitator Superfamily ALIDE_RS11885 PF02885 Glycosyl transferase family, helical bundle domain ALIDE_RS11885 PF00591 Glycosyl transferase family, a/b domain ALIDE_RS11890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALIDE_RS11895 PF03061 Thioesterase superfamily ALIDE_RS11915 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS11920 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS11920 PF00501 AMP-binding enzyme ALIDE_RS11925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS11925 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS11925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS11930 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS11935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALIDE_RS11935 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS11940 PF00364 Biotin-requiring enzyme ALIDE_RS11940 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALIDE_RS11940 PF02817 e3 binding domain ALIDE_RS11945 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS11950 PF02780 Transketolase, C-terminal domain ALIDE_RS11950 PF02779 Transketolase, pyrimidine binding domain ALIDE_RS11955 PF00676 Dehydrogenase E1 component ALIDE_RS11960 PF01575 MaoC like domain ALIDE_RS11980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS11980 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS11980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS11985 PF13380 CoA binding domain ALIDE_RS11985 PF13607 Succinyl-CoA ligase like flavodoxin domain ALIDE_RS11995 PF01883 Iron-sulfur cluster assembly protein ALIDE_RS12000 PF01592 NifU-like N terminal domain ALIDE_RS12005 PF00266 Aminotransferase class-V ALIDE_RS12015 PF00005 ABC transporter ALIDE_RS12020 PF01458 Uncharacterized protein family (UPF0051) ALIDE_RS12025 PF01165 Ribosomal protein S21 ALIDE_RS12040 PF01144 Coenzyme A transferase ALIDE_RS12045 PF01144 Coenzyme A transferase ALIDE_RS12055 PF01757 Acyltransferase family ALIDE_RS12060 PF00583 Acetyltransferase (GNAT) family ALIDE_RS12060 PF00696 Amino acid kinase family ALIDE_RS12070 PF01266 FAD dependent oxidoreductase ALIDE_RS12075 PF17645 Arylmalonate decarboxylase ALIDE_RS12085 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS12095 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS12095 PF00005 ABC transporter ALIDE_RS12100 PF00005 ABC transporter ALIDE_RS12105 PF13458 Periplasmic binding protein ALIDE_RS12110 PF00701 Dihydrodipicolinate synthetase family ALIDE_RS12120 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS12120 PF07729 FCD domain ALIDE_RS12125 PF01966 HD domain ALIDE_RS12130 PF02600 Disulfide bond formation protein DsbB ALIDE_RS12135 PF12857 TOBE-like domain ALIDE_RS12135 PF17850 CysA C-terminal regulatory domain ALIDE_RS12135 PF00005 ABC transporter ALIDE_RS12140 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS12145 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS12160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS12160 PF03466 LysR substrate binding domain ALIDE_RS12165 PF02525 Flavodoxin-like fold ALIDE_RS12170 PF03358 NADPH-dependent FMN reductase ALIDE_RS12175 PF03180 NLPA lipoprotein ALIDE_RS12180 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS12185 PF09383 NIL domain ALIDE_RS12185 PF00005 ABC transporter ALIDE_RS12195 PF02132 RecR protein ALIDE_RS12195 PF13662 Toprim domain ALIDE_RS12200 PF02575 YbaB/EbfC DNA-binding family ALIDE_RS12205 PF12169 DNA polymerase III subunits gamma and tau domain III ALIDE_RS12205 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ALIDE_RS12205 PF12170 DNA polymerase III tau subunit V interacting with alpha ALIDE_RS12210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS12210 PF03459 TOBE domain ALIDE_RS12215 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALIDE_RS12215 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALIDE_RS12220 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS12250 PF00005 ABC transporter ALIDE_RS12255 PF01032 FecCD transport family ALIDE_RS12260 PF01497 Periplasmic binding protein ALIDE_RS12270 PF00593 TonB dependent receptor ALIDE_RS12270 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS12285 PF02678 Pirin ALIDE_RS12285 PF05726 Pirin C-terminal cupin domain ALIDE_RS12290 PF05726 Pirin C-terminal cupin domain ALIDE_RS12290 PF02678 Pirin ALIDE_RS12295 PF00580 UvrD/REP helicase N-terminal domain ALIDE_RS12295 PF13361 UvrD-like helicase C-terminal domain ALIDE_RS12295 PF12705 PD-(D/E)XK nuclease superfamily ALIDE_RS12300 PF12705 PD-(D/E)XK nuclease superfamily ALIDE_RS12305 PF00085 Thioredoxin ALIDE_RS12310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALIDE_RS12310 PF07498 Rho termination factor, N-terminal domain ALIDE_RS12310 PF07497 Rho termination factor, RNA-binding domain ALIDE_RS12315 PF01197 Ribosomal protein L31 ALIDE_RS12325 PF01554 MatE ALIDE_RS12330 PF11808 Phosphate regulon sensor protein PhoR ALIDE_RS12330 PF00989 PAS fold ALIDE_RS12330 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS12330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS12335 PF00072 Response regulator receiver domain ALIDE_RS12335 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS12340 PF01895 PhoU domain ALIDE_RS12345 PF00005 ABC transporter ALIDE_RS12350 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS12355 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS12360 PF12849 PBP superfamily domain ALIDE_RS12365 PF02541 Ppx/GppA phosphatase family ALIDE_RS12370 PF00300 Histidine phosphatase superfamily (branch 1) ALIDE_RS12375 PF13089 Polyphosphate kinase N-terminal domain ALIDE_RS12375 PF02503 Polyphosphate kinase middle domain ALIDE_RS12375 PF13090 Polyphosphate kinase C-terminal domain 2 ALIDE_RS12375 PF17941 Polyphosphate kinase C-terminal domain 1 ALIDE_RS12385 PF00563 EAL domain ALIDE_RS12385 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS12385 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS12390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALIDE_RS12390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALIDE_RS12390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALIDE_RS12390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALIDE_RS12395 PF00809 Pterin binding enzyme ALIDE_RS12400 PF06480 FtsH Extracellular ALIDE_RS12400 PF17862 AAA+ lid domain ALIDE_RS12400 PF00004 ATPase family associated with various cellular activities (AAA) ALIDE_RS12400 PF01434 Peptidase family M41 ALIDE_RS12405 PF01728 FtsJ-like methyltransferase ALIDE_RS12410 PF01985 CRS1 / YhbY (CRM) domain ALIDE_RS12425 PF03449 Transcription elongation factor, N-terminal ALIDE_RS12425 PF01272 Transcription elongation factor, GreA/GreB, C-term ALIDE_RS12430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS12430 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALIDE_RS12430 PF02142 MGS-like domain ALIDE_RS12435 PF00117 Glutamine amidotransferase class-I ALIDE_RS12435 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ALIDE_RS12445 PF13411 MerR HTH family regulatory protein ALIDE_RS12450 PF00216 Bacterial DNA-binding protein ALIDE_RS12455 PF03484 tRNA synthetase B5 domain ALIDE_RS12455 PF01588 Putative tRNA binding domain ALIDE_RS12455 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ALIDE_RS12455 PF03483 B3/4 domain ALIDE_RS12455 PF03147 Ferredoxin-fold anticodon binding domain ALIDE_RS12460 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ALIDE_RS12460 PF01409 tRNA synthetases class II core domain (F) ALIDE_RS12465 PF00453 Ribosomal protein L20 ALIDE_RS12470 PF01632 Ribosomal protein L35 ALIDE_RS12475 PF05198 Translation initiation factor IF-3, N-terminal domain ALIDE_RS12475 PF00707 Translation initiation factor IF-3, C-terminal domain ALIDE_RS12480 PF03129 Anticodon binding domain ALIDE_RS12480 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALIDE_RS12480 PF02824 TGS domain ALIDE_RS12480 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALIDE_RS12490 PF00463 Isocitrate lyase family ALIDE_RS12515 PF01618 MotA/TolQ/ExbB proton channel family ALIDE_RS12520 PF02472 Biopolymer transport protein ExbD/TolR ALIDE_RS12530 PF03928 Haem-degrading ALIDE_RS12535 PF01027 Inhibitor of apoptosis-promoting Bax1 ALIDE_RS12545 PF07690 Major Facilitator Superfamily ALIDE_RS12555 PF00893 Small Multidrug Resistance protein ALIDE_RS12560 PF02417 Chromate transporter ALIDE_RS12570 PF02146 Sir2 family ALIDE_RS12580 PF07237 Protein of unknown function (DUF1428) ALIDE_RS12615 PF00588 SpoU rRNA Methylase family ALIDE_RS12615 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALIDE_RS12620 PF00375 Sodium:dicarboxylate symporter family ALIDE_RS12625 PF00005 ABC transporter ALIDE_RS12630 PF13472 GDSL-like Lipase/Acylhydrolase family ALIDE_RS12640 PF01053 Cys/Met metabolism PLP-dependent enzyme ALIDE_RS12650 PF01740 STAS domain ALIDE_RS12650 PF00916 Sulfate permease family ALIDE_RS12655 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS12660 PF10609 NUBPL iron-transfer P-loop NTPase ALIDE_RS12665 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS12665 PF00501 AMP-binding enzyme ALIDE_RS12665 PF16177 Acetyl-coenzyme A synthetase N-terminus ALIDE_RS12675 PF07995 Glucose / Sorbosone dehydrogenase ALIDE_RS12680 PF03466 LysR substrate binding domain ALIDE_RS12680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS12685 PF00171 Aldehyde dehydrogenase family ALIDE_RS12695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS12695 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS12695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS12705 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALIDE_RS12705 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALIDE_RS12720 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS12725 PF04320 Protein with unknown function (DUF469) ALIDE_RS12730 PF08666 SAF domain ALIDE_RS12730 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ALIDE_RS12735 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS12740 PF13378 Enolase C-terminal domain-like ALIDE_RS12740 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALIDE_RS12750 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS12755 PF00701 Dihydrodipicolinate synthetase family ALIDE_RS12760 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS12765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALIDE_RS12765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALIDE_RS12770 PF13378 Enolase C-terminal domain-like ALIDE_RS12775 PF00171 Aldehyde dehydrogenase family ALIDE_RS12780 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALIDE_RS12785 PF04376 Arginine-tRNA-protein transferase, N terminus ALIDE_RS12785 PF04377 Arginine-tRNA-protein transferase, C terminus ALIDE_RS12790 PF17954 Quercetinase C-terminal cupin domain ALIDE_RS12790 PF02678 Pirin ALIDE_RS12795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS12795 PF03466 LysR substrate binding domain ALIDE_RS12800 PF01593 Flavin containing amine oxidoreductase ALIDE_RS12805 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALIDE_RS12810 PF02390 Putative methyltransferase ALIDE_RS12815 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS12820 PF02272 DHHA1 domain ALIDE_RS12820 PF01411 tRNA synthetases class II (A) ALIDE_RS12820 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALIDE_RS12825 PF00701 Dihydrodipicolinate synthetase family ALIDE_RS12835 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALIDE_RS12840 PF03480 Bacterial extracellular solute-binding protein, family 7 ALIDE_RS12845 PF02615 Malate/L-lactate dehydrogenase ALIDE_RS12850 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS12850 PF07729 FCD domain ALIDE_RS12855 PF00849 RNA pseudouridylate synthase ALIDE_RS12860 PF13607 Succinyl-CoA ligase like flavodoxin domain ALIDE_RS12860 PF13380 CoA binding domain ALIDE_RS12860 PF00583 Acetyltransferase (GNAT) family ALIDE_RS12865 PF00534 Glycosyl transferases group 1 ALIDE_RS12865 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ALIDE_RS12870 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALIDE_RS12870 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALIDE_RS12870 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALIDE_RS12870 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALIDE_RS12875 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS12880 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS12885 PF04962 KduI/IolB family ALIDE_RS12890 PF00294 pfkB family carbohydrate kinase ALIDE_RS12900 PF12833 Helix-turn-helix domain ALIDE_RS12900 PF02805 Metal binding domain of Ada ALIDE_RS12905 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALIDE_RS12905 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALIDE_RS12915 PF16701 Adenylate cyclase regulatory domain ALIDE_RS12915 PF00211 Adenylate and Guanylate cyclase catalytic domain ALIDE_RS12920 PF17676 LD-carboxypeptidase C-terminal domain ALIDE_RS12920 PF02016 LD-carboxypeptidase N-terminal domain ALIDE_RS12925 PF14437 MafB19-like deaminase ALIDE_RS12935 PF12392 Collagenase ALIDE_RS12935 PF01136 Peptidase family U32 ALIDE_RS12940 PF01053 Cys/Met metabolism PLP-dependent enzyme ALIDE_RS12945 PF12867 DinB superfamily ALIDE_RS12945 PF03781 Sulfatase-modifying factor enzyme 1 ALIDE_RS12950 PF10017 Histidine-specific methyltransferase, SAM-dependent ALIDE_RS12955 PF03922 OmpW family ALIDE_RS12960 PF05661 Protein of unknown function (DUF808) ALIDE_RS12965 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ALIDE_RS12965 PF02769 AIR synthase related protein, C-terminal domain ALIDE_RS12965 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ALIDE_RS12970 PF00557 Metallopeptidase family M24 ALIDE_RS12975 PF08335 GlnD PII-uridylyltransferase ALIDE_RS12975 PF01909 Nucleotidyltransferase domain ALIDE_RS12975 PF01966 HD domain ALIDE_RS12980 PF00860 Permease family ALIDE_RS12985 PF01327 Polypeptide deformylase ALIDE_RS12990 PF04304 Protein of unknown function (DUF454) ALIDE_RS13015 PF00180 Isocitrate/isopropylmalate dehydrogenase ALIDE_RS13025 PF03971 Monomeric isocitrate dehydrogenase ALIDE_RS13030 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALIDE_RS13030 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALIDE_RS13035 PF13742 OB-fold nucleic acid binding domain ALIDE_RS13035 PF02601 Exonuclease VII, large subunit ALIDE_RS13040 PF01618 MotA/TolQ/ExbB proton channel family ALIDE_RS13045 PF02472 Biopolymer transport protein ExbD/TolR ALIDE_RS13050 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ALIDE_RS13055 PF03966 Trm112p-like protein ALIDE_RS13060 PF02348 Cytidylyltransferase ALIDE_RS13065 PF05191 Adenylate kinase, active site lid ALIDE_RS13070 PF17763 Glutaminase/Asparaginase C-terminal domain ALIDE_RS13070 PF00710 Asparaginase, N-terminal ALIDE_RS13075 PF01726 LexA DNA binding domain ALIDE_RS13075 PF00717 Peptidase S24-like ALIDE_RS13085 PF04408 Helicase associated domain (HA2) ALIDE_RS13085 PF00271 Helicase conserved C-terminal domain ALIDE_RS13085 PF00270 DEAD/DEAH box helicase ALIDE_RS13085 PF11898 Domain of unknown function (DUF3418) ALIDE_RS13085 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ALIDE_RS13090 PF02803 Thiolase, C-terminal domain ALIDE_RS13090 PF00108 Thiolase, N-terminal domain ALIDE_RS13095 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS13095 PF00501 AMP-binding enzyme ALIDE_RS13100 PF02632 BioY family ALIDE_RS13110 PF00005 ABC transporter ALIDE_RS13125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALIDE_RS13130 PF01926 50S ribosome-binding GTPase ALIDE_RS13135 PF01926 50S ribosome-binding GTPase ALIDE_RS13140 PF07690 Major Facilitator Superfamily ALIDE_RS13145 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS13150 PF02426 Muconolactone delta-isomerase ALIDE_RS13155 PF12146 Serine aminopeptidase, S33 ALIDE_RS13160 PF00106 short chain dehydrogenase ALIDE_RS13165 PF00775 Dioxygenase ALIDE_RS13165 PF04444 Catechol dioxygenase N terminus ALIDE_RS13170 PF13378 Enolase C-terminal domain-like ALIDE_RS13170 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALIDE_RS13175 PF03466 LysR substrate binding domain ALIDE_RS13175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS13180 PF01081 KDPG and KHG aldolase ALIDE_RS13185 PF00920 Dehydratase family ALIDE_RS13190 PF03480 Bacterial extracellular solute-binding protein, family 7 ALIDE_RS13195 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ALIDE_RS13200 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ALIDE_RS13210 PF00356 Bacterial regulatory proteins, lacI family ALIDE_RS13210 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ALIDE_RS13215 PF00004 ATPase family associated with various cellular activities (AAA) ALIDE_RS13215 PF02861 Clp amino terminal domain, pathogenicity island component ALIDE_RS13215 PF10431 C-terminal, D2-small domain, of ClpB protein ALIDE_RS13215 PF07724 AAA domain (Cdc48 subfamily) ALIDE_RS13215 PF17871 AAA lid domain ALIDE_RS13220 PF02617 ATP-dependent Clp protease adaptor protein ClpS ALIDE_RS13225 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALIDE_RS13225 PF01336 OB-fold nucleic acid binding domain ALIDE_RS13225 PF14579 Helix-hairpin-helix motif ALIDE_RS13225 PF02811 PHP domain ALIDE_RS13225 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALIDE_RS13230 PF13525 Outer membrane lipoprotein ALIDE_RS13235 PF13307 Helicase C-terminal domain ALIDE_RS13235 PF04851 Type III restriction enzyme, res subunit ALIDE_RS13250 PF03969 AFG1-like ATPase ALIDE_RS13255 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS13255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALIDE_RS13260 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALIDE_RS13260 PF00364 Biotin-requiring enzyme ALIDE_RS13260 PF02817 e3 binding domain ALIDE_RS13265 PF16870 2-oxoglutarate dehydrogenase C-terminal ALIDE_RS13265 PF02779 Transketolase, pyrimidine binding domain ALIDE_RS13265 PF00676 Dehydrogenase E1 component ALIDE_RS13265 PF16078 2-oxoglutarate dehydrogenase N-terminus ALIDE_RS13270 PF01594 AI-2E family transporter ALIDE_RS13275 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS13290 PF03466 LysR substrate binding domain ALIDE_RS13290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS13295 PF00582 Universal stress protein family ALIDE_RS13300 PF00005 ABC transporter ALIDE_RS13300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALIDE_RS13305 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS13305 PF12911 N-terminal TM domain of oligopeptide transport permease C ALIDE_RS13310 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS13320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALIDE_RS13330 PF00892 EamA-like transporter family ALIDE_RS13335 PF04325 Protein of unknown function (DUF465) ALIDE_RS13340 PF14743 DNA ligase OB-like domain ALIDE_RS13340 PF01068 ATP dependent DNA ligase domain ALIDE_RS13345 PF03741 Integral membrane protein TerC family ALIDE_RS13350 PF01276 Orn/Lys/Arg decarboxylase, major domain ALIDE_RS13350 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain ALIDE_RS13350 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain ALIDE_RS13360 PF01145 SPFH domain / Band 7 family ALIDE_RS13365 PF03466 LysR substrate binding domain ALIDE_RS13365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS13370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALIDE_RS13370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALIDE_RS13370 PF00205 Thiamine pyrophosphate enzyme, central domain ALIDE_RS13380 PF02694 Uncharacterised BCR, YnfA/UPF0060 family ALIDE_RS13385 PF02899 Phage integrase, N-terminal SAM-like domain ALIDE_RS13385 PF00589 Phage integrase family ALIDE_RS13390 PF03358 NADPH-dependent FMN reductase ALIDE_RS13395 PF00690 Cation transporter/ATPase, N-terminus ALIDE_RS13395 PF00689 Cation transporting ATPase, C-terminus ALIDE_RS13400 PF08281 Sigma-70, region 4 ALIDE_RS13400 PF04542 Sigma-70 region 2 ALIDE_RS13425 PF01545 Cation efflux family ALIDE_RS13435 PF13230 Glutamine amidotransferases class-II ALIDE_RS13440 PF00175 Oxidoreductase NAD-binding domain ALIDE_RS13440 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS13440 PF00970 Oxidoreductase FAD-binding domain ALIDE_RS13445 PF00108 Thiolase, N-terminal domain ALIDE_RS13445 PF02803 Thiolase, C-terminal domain ALIDE_RS13470 PF13276 HTH-like domain ALIDE_RS13470 PF13333 Integrase core domain ALIDE_RS13470 PF00665 Integrase core domain ALIDE_RS13475 PF01527 Transposase ALIDE_RS13480 PF01751 Toprim domain ALIDE_RS13480 PF01131 DNA topoisomerase ALIDE_RS13520 PF13614 AAA domain ALIDE_RS13535 PF03466 LysR substrate binding domain ALIDE_RS13535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS13540 PF00873 AcrB/AcrD/AcrF family ALIDE_RS13545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALIDE_RS13565 PF04945 YHS domain ALIDE_RS13570 PF11339 Protein of unknown function (DUF3141) ALIDE_RS13575 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS13575 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ALIDE_RS13605 PF05275 Copper resistance protein B precursor (CopB) ALIDE_RS13610 PF00394 Multicopper oxidase ALIDE_RS13610 PF07731 Multicopper oxidase ALIDE_RS13610 PF07732 Multicopper oxidase ALIDE_RS13615 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS13615 PF00072 Response regulator receiver domain ALIDE_RS13620 PF00672 HAMP domain ALIDE_RS13620 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS13620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS13630 PF07732 Multicopper oxidase ALIDE_RS13630 PF07731 Multicopper oxidase ALIDE_RS13640 PF13276 HTH-like domain ALIDE_RS13640 PF00665 Integrase core domain ALIDE_RS13640 PF13333 Integrase core domain ALIDE_RS13655 PF00403 Heavy-metal-associated domain ALIDE_RS13660 PF02583 Metal-sensitive transcriptional repressor ALIDE_RS13665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS13665 PF03466 LysR substrate binding domain ALIDE_RS13675 PF00216 Bacterial DNA-binding protein ALIDE_RS13690 PF03466 LysR substrate binding domain ALIDE_RS13690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS13695 PF00180 Isocitrate/isopropylmalate dehydrogenase ALIDE_RS13700 PF01734 Patatin-like phospholipase ALIDE_RS13705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS13705 PF03466 LysR substrate binding domain ALIDE_RS13710 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS13715 PF08666 SAF domain ALIDE_RS13715 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus ALIDE_RS13720 PF00171 Aldehyde dehydrogenase family ALIDE_RS13725 PF03328 HpcH/HpaI aldolase/citrate lyase family ALIDE_RS13735 PF01177 Asp/Glu/Hydantoin racemase ALIDE_RS13750 PF01979 Amidohydrolase family ALIDE_RS13755 PF05962 HutD ALIDE_RS13760 PF00005 ABC transporter ALIDE_RS13765 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS13770 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS13780 PF01175 Urocanase Rossmann-like domain ALIDE_RS13780 PF17391 Urocanase N-terminal domain ALIDE_RS13780 PF17392 Urocanase C-terminal domain ALIDE_RS13785 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin ALIDE_RS13790 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS13790 PF07702 UTRA domain ALIDE_RS13795 PF00221 Aromatic amino acid lyase ALIDE_RS13800 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS13800 PF07702 UTRA domain ALIDE_RS13805 PF00005 ABC transporter ALIDE_RS13810 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS13820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS13820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS13820 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS13825 PF02515 CoA-transferase family III ALIDE_RS13830 PF03466 LysR substrate binding domain ALIDE_RS13830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS13835 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS13840 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS13845 PF00682 HMGL-like ALIDE_RS13850 PF02515 CoA-transferase family III ALIDE_RS13855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS13855 PF03466 LysR substrate binding domain ALIDE_RS13865 PF09285 Elongation factor P, C-terminal ALIDE_RS13865 PF08207 Elongation factor P (EF-P) KOW-like domain ALIDE_RS13865 PF01132 Elongation factor P (EF-P) OB domain ALIDE_RS13875 PF00474 Sodium:solute symporter family ALIDE_RS13885 PF00391 PEP-utilising enzyme, mobile domain ALIDE_RS13885 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ALIDE_RS13885 PF02896 PEP-utilising enzyme, TIM barrel domain ALIDE_RS13890 PF03618 Kinase/pyrophosphorylase ALIDE_RS13895 PF00873 AcrB/AcrD/AcrF family ALIDE_RS13920 PF00199 Catalase ALIDE_RS13920 PF06628 Catalase-related immune-responsive ALIDE_RS13925 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS13925 PF13192 Thioredoxin domain ALIDE_RS13930 PF00578 AhpC/TSA family ALIDE_RS13930 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALIDE_RS13935 PF00210 Ferritin-like domain ALIDE_RS13940 PF05247 Flagellar transcriptional activator (FlhD) ALIDE_RS13945 PF05280 Flagellar transcriptional activator (FlhC) ALIDE_RS13950 PF00311 Phosphoenolpyruvate carboxylase ALIDE_RS13955 PF03900 Porphobilinogen deaminase, C-terminal domain ALIDE_RS13955 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ALIDE_RS13975 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALIDE_RS14000 PF08264 Anticodon-binding domain of tRNA ALIDE_RS14000 PF00133 tRNA synthetases class I (I, L, M and V) ALIDE_RS14000 PF10458 Valyl tRNA synthetase tRNA binding arm ALIDE_RS14005 PF00483 Nucleotidyl transferase ALIDE_RS14010 PF01206 Sulfurtransferase TusA ALIDE_RS14015 PF00293 NUDIX domain ALIDE_RS14015 PF09297 NADH pyrophosphatase zinc ribbon domain ALIDE_RS14015 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ALIDE_RS14020 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS14030 PF03743 Bacterial conjugation TrbI-like protein ALIDE_RS14035 PF03524 Conjugal transfer protein ALIDE_RS14060 PF03135 CagE, TrbE, VirB family, component of type IV transporter system ALIDE_RS14070 PF04956 TrbC/VIRB2 family ALIDE_RS14075 PF00437 Type II/IV secretion system protein ALIDE_RS14085 PF02534 Type IV secretory system Conjugative DNA transfer ALIDE_RS14095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS14095 PF03466 LysR substrate binding domain ALIDE_RS14105 PF01515 Phosphate acetyl/butaryl transferase ALIDE_RS14110 PF00582 Universal stress protein family ALIDE_RS14115 PF00106 short chain dehydrogenase ALIDE_RS14125 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ALIDE_RS14125 PF00561 alpha/beta hydrolase fold ALIDE_RS14130 PF00440 Bacterial regulatory proteins, tetR family ALIDE_RS14140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALIDE_RS14145 PF00005 ABC transporter ALIDE_RS14160 PF02321 Outer membrane efflux protein ALIDE_RS14165 PF00465 Iron-containing alcohol dehydrogenase ALIDE_RS14175 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ALIDE_RS14175 PF00753 Metallo-beta-lactamase superfamily ALIDE_RS14175 PF10996 Beta-Casp domain ALIDE_RS14180 PF03641 Possible lysine decarboxylase ALIDE_RS14180 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ALIDE_RS14180 PF11892 Domain of unknown function (DUF3412) ALIDE_RS14195 PF00871 Acetokinase family ALIDE_RS14200 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase ALIDE_RS14200 PF09363 XFP C-terminal domain ALIDE_RS14200 PF09364 XFP N-terminal domain ALIDE_RS14225 PF08281 Sigma-70, region 4 ALIDE_RS14225 PF04542 Sigma-70 region 2 ALIDE_RS14240 PF00970 Oxidoreductase FAD-binding domain ALIDE_RS14240 PF00175 Oxidoreductase NAD-binding domain ALIDE_RS14240 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS14245 PF02424 ApbE family ALIDE_RS14255 PF01292 Prokaryotic cytochrome b561 ALIDE_RS14270 PF00403 Heavy-metal-associated domain ALIDE_RS14280 PF10502 Signal peptidase, peptidase S26 ALIDE_RS14295 PF13276 HTH-like domain ALIDE_RS14295 PF13333 Integrase core domain ALIDE_RS14295 PF00665 Integrase core domain ALIDE_RS14300 PF01527 Transposase ALIDE_RS14315 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS14325 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS14325 PF00501 AMP-binding enzyme ALIDE_RS14330 PF00682 HMGL-like ALIDE_RS14335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS14335 PF00364 Biotin-requiring enzyme ALIDE_RS14335 PF02785 Biotin carboxylase C-terminal domain ALIDE_RS14335 PF00289 Biotin carboxylase, N-terminal domain ALIDE_RS14340 PF01039 Carboxyl transferase domain ALIDE_RS14345 PF14535 AMP-binding enzyme C-terminal domain ALIDE_RS14345 PF00501 AMP-binding enzyme ALIDE_RS14350 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS14370 PF00216 Bacterial DNA-binding protein ALIDE_RS14375 PF01066 CDP-alcohol phosphatidyltransferase ALIDE_RS14380 PF08459 UvrC Helix-hairpin-helix N-terminal ALIDE_RS14380 PF01541 GIY-YIG catalytic domain ALIDE_RS14410 PF09339 IclR helix-turn-helix domain ALIDE_RS14420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS14420 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS14420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS14425 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS14425 PF00501 AMP-binding enzyme ALIDE_RS14435 PF00005 ABC transporter ALIDE_RS14440 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS14440 PF00005 ABC transporter ALIDE_RS14445 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS14445 PF11862 Domain of unknown function (DUF3382) ALIDE_RS14450 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS14455 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS14460 PF13609 Gram-negative porin ALIDE_RS14470 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS14475 PF00171 Aldehyde dehydrogenase family ALIDE_RS14480 PF00171 Aldehyde dehydrogenase family ALIDE_RS14490 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS14500 PF00171 Aldehyde dehydrogenase family ALIDE_RS14505 PF00107 Zinc-binding dehydrogenase ALIDE_RS14505 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS14510 PF13458 Periplasmic binding protein ALIDE_RS14515 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS14520 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS14520 PF11862 Domain of unknown function (DUF3382) ALIDE_RS14525 PF00005 ABC transporter ALIDE_RS14525 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS14530 PF00005 ABC transporter ALIDE_RS14540 PF03328 HpcH/HpaI aldolase/citrate lyase family ALIDE_RS14545 PF02515 CoA-transferase family III ALIDE_RS14555 PF00766 Electron transfer flavoprotein FAD-binding domain ALIDE_RS14555 PF01012 Electron transfer flavoprotein domain ALIDE_RS14560 PF01012 Electron transfer flavoprotein domain ALIDE_RS14565 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS14565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS14565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS14570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS14570 PF03466 LysR substrate binding domain ALIDE_RS14580 PF02515 CoA-transferase family III ALIDE_RS14590 PF16177 Acetyl-coenzyme A synthetase N-terminus ALIDE_RS14590 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS14590 PF00501 AMP-binding enzyme ALIDE_RS14595 PF00108 Thiolase, N-terminal domain ALIDE_RS14595 PF02803 Thiolase, C-terminal domain ALIDE_RS14605 PF01575 MaoC like domain ALIDE_RS14610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS14610 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS14610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS14620 PF09339 IclR helix-turn-helix domain ALIDE_RS14625 PF09339 IclR helix-turn-helix domain ALIDE_RS14640 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS14645 PF05199 GMC oxidoreductase ALIDE_RS14645 PF00732 GMC oxidoreductase ALIDE_RS14650 PF00171 Aldehyde dehydrogenase family ALIDE_RS14660 PF02515 CoA-transferase family III ALIDE_RS14665 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS14670 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS14675 PF00106 short chain dehydrogenase ALIDE_RS14685 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS14685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS14685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS14705 PF02803 Thiolase, C-terminal domain ALIDE_RS14705 PF00108 Thiolase, N-terminal domain ALIDE_RS14710 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS14715 PF02515 CoA-transferase family III ALIDE_RS14720 PF02515 CoA-transferase family III ALIDE_RS14730 PF02515 CoA-transferase family III ALIDE_RS14735 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS14740 PF03466 LysR substrate binding domain ALIDE_RS14740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS14755 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALIDE_RS14755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALIDE_RS14760 PF00005 ABC transporter ALIDE_RS14765 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS14765 PF00005 ABC transporter ALIDE_RS14775 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS14780 PF13458 Periplasmic binding protein ALIDE_RS14785 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS14790 PF00881 Nitroreductase family ALIDE_RS14800 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS14805 PF02515 CoA-transferase family III ALIDE_RS14810 PF02515 CoA-transferase family III ALIDE_RS14815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS14815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS14815 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS14820 PF01575 MaoC like domain ALIDE_RS14825 PF03328 HpcH/HpaI aldolase/citrate lyase family ALIDE_RS14830 PF17932 Tetracyclin repressor-like, C-terminal domain ALIDE_RS14830 PF00440 Bacterial regulatory proteins, tetR family ALIDE_RS14845 PF00004 ATPase family associated with various cellular activities (AAA) ALIDE_RS14845 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALIDE_RS14845 PF05362 Lon protease (S16) C-terminal proteolytic domain ALIDE_RS14850 PF07724 AAA domain (Cdc48 subfamily) ALIDE_RS14850 PF10431 C-terminal, D2-small domain, of ClpB protein ALIDE_RS14850 PF06689 ClpX C4-type zinc finger ALIDE_RS14855 PF00574 Clp protease ALIDE_RS14860 PF05698 Bacterial trigger factor protein (TF) C-terminus ALIDE_RS14860 PF05697 Bacterial trigger factor protein (TF) ALIDE_RS14860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALIDE_RS14870 PF00873 AcrB/AcrD/AcrF family ALIDE_RS14875 PF13533 Biotin-lipoyl like ALIDE_RS14890 PF02203 Tar ligand binding domain homologue ALIDE_RS14890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS14890 PF00672 HAMP domain ALIDE_RS14895 PF01593 Flavin containing amine oxidoreductase ALIDE_RS14905 PF03631 Virulence factor BrkB ALIDE_RS14915 PF01565 FAD binding domain ALIDE_RS14915 PF02913 FAD linked oxidases, C-terminal domain ALIDE_RS14920 PF00303 Thymidylate synthase ALIDE_RS14925 PF00186 Dihydrofolate reductase ALIDE_RS14935 PF00691 OmpA family ALIDE_RS14935 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALIDE_RS14955 PF13340 Putative transposase of IS4/5 family (DUF4096) ALIDE_RS14960 PF00072 Response regulator receiver domain ALIDE_RS14960 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS14965 PF13493 Domain of unknown function (DUF4118) ALIDE_RS14965 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS14965 PF13492 GAF domain ALIDE_RS14965 PF02702 Osmosensitive K+ channel His kinase sensor domain ALIDE_RS14965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS14970 PF02669 K+-transporting ATPase, c chain ALIDE_RS14980 PF03814 Potassium-transporting ATPase A subunit ALIDE_RS14990 PF03372 Endonuclease/Exonuclease/phosphatase family ALIDE_RS14995 PF00072 Response regulator receiver domain ALIDE_RS14995 PF00158 Sigma-54 interaction domain ALIDE_RS14995 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS15000 PF00989 PAS fold ALIDE_RS15000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS15000 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS15010 PF03951 Glutamine synthetase, beta-Grasp domain ALIDE_RS15010 PF00120 Glutamine synthetase, catalytic domain ALIDE_RS15040 PF01479 S4 domain ALIDE_RS15040 PF00849 RNA pseudouridylate synthase ALIDE_RS15075 PF00709 Adenylosuccinate synthetase ALIDE_RS15080 PF13393 Histidyl-tRNA synthetase ALIDE_RS15090 PF01145 SPFH domain / Band 7 family ALIDE_RS15095 PF01145 SPFH domain / Band 7 family ALIDE_RS15095 PF12221 Bacterial membrane protein N terminal ALIDE_RS15100 PF01926 50S ribosome-binding GTPase ALIDE_RS15100 PF13167 GTP-binding GTPase N-terminal ALIDE_RS15100 PF16360 GTP-binding GTPase Middle Region ALIDE_RS15105 PF17209 Hfq protein ALIDE_RS15110 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ALIDE_RS15110 PF01926 50S ribosome-binding GTPase ALIDE_RS15115 PF13360 PQQ-like domain ALIDE_RS15125 PF13393 Histidyl-tRNA synthetase ALIDE_RS15125 PF03129 Anticodon binding domain ALIDE_RS15130 PF04551 GcpE protein ALIDE_RS15145 PF04055 Radical SAM superfamily ALIDE_RS15150 PF00334 Nucleoside diphosphate kinase ALIDE_RS15155 PF01479 S4 domain ALIDE_RS15155 PF00849 RNA pseudouridylate synthase ALIDE_RS15160 PF04079 Segregation and condensation complex subunit ScpB ALIDE_RS15165 PF00849 RNA pseudouridylate synthase ALIDE_RS15165 PF01479 S4 domain ALIDE_RS15170 PF01551 Peptidase family M23 ALIDE_RS15170 PF01476 LysM domain ALIDE_RS15180 PF01975 Survival protein SurE ALIDE_RS15185 PF00072 Response regulator receiver domain ALIDE_RS15185 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS15190 PF09423 PhoD-like phosphatase ALIDE_RS15190 PF16655 PhoD-like phosphatase, N-terminal domain ALIDE_RS15200 PF01070 FMN-dependent dehydrogenase ALIDE_RS15205 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS15220 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALIDE_RS15230 PF05192 MutS domain III ALIDE_RS15230 PF05188 MutS domain II ALIDE_RS15230 PF01624 MutS domain I ALIDE_RS15230 PF05190 MutS family domain IV ALIDE_RS15230 PF00488 MutS domain V ALIDE_RS15235 PF02321 Outer membrane efflux protein ALIDE_RS15240 PF00873 AcrB/AcrD/AcrF family ALIDE_RS15245 PF00873 AcrB/AcrD/AcrF family ALIDE_RS15250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALIDE_RS15260 PF02673 Bacitracin resistance protein BacA ALIDE_RS15275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS15275 PF06580 Histidine kinase ALIDE_RS15280 PF04397 LytTr DNA-binding domain ALIDE_RS15280 PF00072 Response regulator receiver domain ALIDE_RS15285 PF07690 Major Facilitator Superfamily ALIDE_RS15295 PF01494 FAD binding domain ALIDE_RS15300 PF00694 Aconitase C-terminal domain ALIDE_RS15300 PF00330 Aconitase family (aconitate hydratase) ALIDE_RS15305 PF00816 H-NS histone family ALIDE_RS15310 PF00149 Calcineurin-like phosphoesterase ALIDE_RS15320 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS15330 PF18764 Nitrous oxide reductase propeller repeat ALIDE_RS15330 PF13473 Cupredoxin-like domain ALIDE_RS15330 PF18793 Nitrous oxide reductase propeller repeat 2 ALIDE_RS15335 PF04205 FMN-binding domain ALIDE_RS15335 PF12801 4Fe-4S binding domain ALIDE_RS15340 PF05048 Periplasmic copper-binding protein (NosD) ALIDE_RS15345 PF00005 ABC transporter ALIDE_RS15350 PF12679 ABC-2 family transporter protein ALIDE_RS15365 PF00271 Helicase conserved C-terminal domain ALIDE_RS15365 PF00270 DEAD/DEAH box helicase ALIDE_RS15370 PF04228 Putative neutral zinc metallopeptidase ALIDE_RS15375 PF00692 dUTPase ALIDE_RS15395 PF00576 HIUase/Transthyretin family ALIDE_RS15410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALIDE_RS15410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ALIDE_RS15415 PF01261 Xylose isomerase-like TIM barrel ALIDE_RS15420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALIDE_RS15420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALIDE_RS15420 PF00205 Thiamine pyrophosphate enzyme, central domain ALIDE_RS15425 PF03466 LysR substrate binding domain ALIDE_RS15425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS15430 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS15435 PF00202 Aminotransferase class-III ALIDE_RS15445 PF05161 MOFRL family ALIDE_RS15445 PF13660 Domain of unknown function (DUF4147) ALIDE_RS15450 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS15455 PF00180 Isocitrate/isopropylmalate dehydrogenase ALIDE_RS15460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS15460 PF03466 LysR substrate binding domain ALIDE_RS15465 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS15465 PF07729 FCD domain ALIDE_RS15475 PF01546 Peptidase family M20/M25/M40 ALIDE_RS15475 PF07687 Peptidase dimerisation domain ALIDE_RS15480 PF01546 Peptidase family M20/M25/M40 ALIDE_RS15480 PF07687 Peptidase dimerisation domain ALIDE_RS15485 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS15485 PF00563 EAL domain ALIDE_RS15485 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS15500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS15500 PF02203 Tar ligand binding domain homologue ALIDE_RS15500 PF00672 HAMP domain ALIDE_RS15505 PF00860 Permease family ALIDE_RS15510 PF01515 Phosphate acetyl/butaryl transferase ALIDE_RS15510 PF00390 Malic enzyme, N-terminal domain ALIDE_RS15510 PF03949 Malic enzyme, NAD binding domain ALIDE_RS15535 PF00578 AhpC/TSA family ALIDE_RS15540 PF13638 PIN domain ALIDE_RS15540 PF02562 PhoH-like protein ALIDE_RS15545 PF00171 Aldehyde dehydrogenase family ALIDE_RS15550 PF03796 DnaB-like helicase C terminal domain ALIDE_RS15550 PF00772 DnaB-like helicase N terminal domain ALIDE_RS15555 PF03948 Ribosomal protein L9, C-terminal domain ALIDE_RS15555 PF01281 Ribosomal protein L9, N-terminal domain ALIDE_RS15560 PF01084 Ribosomal protein S18 ALIDE_RS15570 PF01250 Ribosomal protein S6 ALIDE_RS15575 PF01025 GrpE ALIDE_RS15580 PF00012 Hsp70 protein ALIDE_RS15585 PF00684 DnaJ central domain ALIDE_RS15585 PF01556 DnaJ C terminal domain ALIDE_RS15585 PF00226 DnaJ domain ALIDE_RS15595 PF01212 Beta-eliminating lyase ALIDE_RS15600 PF01136 Peptidase family U32 ALIDE_RS15605 PF01136 Peptidase family U32 ALIDE_RS15610 PF02036 SCP-2 sterol transfer family ALIDE_RS15615 PF08859 DGC domain ALIDE_RS15620 PF02441 Flavoprotein ALIDE_RS15625 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ALIDE_RS15630 PF00067 Cytochrome P450 ALIDE_RS15635 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ALIDE_RS15635 PF00753 Metallo-beta-lactamase superfamily ALIDE_RS15635 PF10996 Beta-Casp domain ALIDE_RS15645 PF00330 Aconitase family (aconitate hydratase) ALIDE_RS15650 PF08085 Entericidin EcnA/B family ALIDE_RS15655 PF00694 Aconitase C-terminal domain ALIDE_RS15660 PF00180 Isocitrate/isopropylmalate dehydrogenase ALIDE_RS15665 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALIDE_RS15665 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALIDE_RS15675 PF01416 tRNA pseudouridine synthase ALIDE_RS15680 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ALIDE_RS15685 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS15690 PF00290 Tryptophan synthase alpha chain ALIDE_RS15695 PF17848 Acetyl-coA carboxylase zinc finger domain ALIDE_RS15695 PF01039 Carboxyl transferase domain ALIDE_RS15700 PF02325 YGGT family ALIDE_RS15710 PF02719 Polysaccharide biosynthesis protein ALIDE_RS15720 PF00132 Bacterial transferase hexapeptide (six repeats) ALIDE_RS15725 PF13439 Glycosyltransferase Family 4 ALIDE_RS15735 PF08003 Protein of unknown function (DUF1698) ALIDE_RS15740 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALIDE_RS15745 PF02397 Bacterial sugar transferase ALIDE_RS15750 PF00152 tRNA synthetases class II (D, K and N) ALIDE_RS15750 PF01336 OB-fold nucleic acid binding domain ALIDE_RS15760 PF13458 Periplasmic binding protein ALIDE_RS15765 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS15770 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS15770 PF11862 Domain of unknown function (DUF3382) ALIDE_RS15775 PF00005 ABC transporter ALIDE_RS15775 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS15780 PF00005 ABC transporter ALIDE_RS15785 PF00365 Phosphofructokinase ALIDE_RS15790 PF00933 Glycosyl hydrolase family 3 N terminal domain ALIDE_RS15795 PF01648 4'-phosphopantetheinyl transferase superfamily ALIDE_RS15800 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ALIDE_RS15805 PF02565 Recombination protein O C terminal ALIDE_RS15805 PF11967 Recombination protein O N terminal ALIDE_RS15810 PF01926 50S ribosome-binding GTPase ALIDE_RS15810 PF07650 KH domain ALIDE_RS15815 PF00035 Double-stranded RNA binding motif ALIDE_RS15815 PF14622 Ribonuclease-III-like ALIDE_RS15825 PF10502 Signal peptidase, peptidase S26 ALIDE_RS15830 PF06421 GTP-binding protein LepA C-terminus ALIDE_RS15830 PF03144 Elongation factor Tu domain 2 ALIDE_RS15830 PF00009 Elongation factor Tu GTP binding domain ALIDE_RS15830 PF00679 Elongation factor G C-terminus ALIDE_RS15835 PF13180 PDZ domain ALIDE_RS15850 PF08281 Sigma-70, region 4 ALIDE_RS15850 PF04542 Sigma-70 region 2 ALIDE_RS15860 PF00109 Beta-ketoacyl synthase, N-terminal domain ALIDE_RS15860 PF02801 Beta-ketoacyl synthase, C-terminal domain ALIDE_RS15865 PF00550 Phosphopantetheine attachment site ALIDE_RS15875 PF00698 Acyl transferase domain ALIDE_RS15880 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALIDE_RS15880 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALIDE_RS15885 PF02504 Fatty acid synthesis protein ALIDE_RS15890 PF01783 Ribosomal L32p protein family ALIDE_RS15895 PF02620 Large ribosomal RNA subunit accumulation protein YceD ALIDE_RS15900 PF02545 Maf-like protein ALIDE_RS15905 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALIDE_RS15910 PF01343 Peptidase family S49 ALIDE_RS15910 PF06965 Na+/H+ antiporter 1 ALIDE_RS15920 PF13419 Haloacid dehalogenase-like hydrolase ALIDE_RS15925 PF01479 S4 domain ALIDE_RS15925 PF00849 RNA pseudouridylate synthase ALIDE_RS15930 PF00575 S1 RNA binding domain ALIDE_RS15930 PF12111 Polyribonucleotide phosphorylase C terminal ALIDE_RS15930 PF10150 Ribonuclease E/G family ALIDE_RS15935 PF03883 Peroxide stress protein YaaA ALIDE_RS15945 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ALIDE_RS15945 PF14489 QueF-like protein ALIDE_RS15950 PF08447 PAS fold ALIDE_RS15950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS15955 PF00817 impB/mucB/samB family ALIDE_RS15955 PF11799 impB/mucB/samB family C-terminal domain ALIDE_RS15960 PF03466 LysR substrate binding domain ALIDE_RS15960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS15965 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS15970 PF02515 CoA-transferase family III ALIDE_RS15975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS15975 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS15975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS15985 PF01070 FMN-dependent dehydrogenase ALIDE_RS15990 PF00691 OmpA family ALIDE_RS15995 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS15995 PF13188 PAS domain ALIDE_RS15995 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS15995 PF00563 EAL domain ALIDE_RS16000 PF13689 YfiR/HmsC-like ALIDE_RS16005 PF00912 Transglycosylase ALIDE_RS16005 PF14814 Bifunctional transglycosylase second domain ALIDE_RS16005 PF00905 Penicillin binding protein transpeptidase domain ALIDE_RS16010 PF02142 MGS-like domain ALIDE_RS16015 PF02515 CoA-transferase family III ALIDE_RS16020 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS16020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS16020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS16025 PF13380 CoA binding domain ALIDE_RS16025 PF13607 Succinyl-CoA ligase like flavodoxin domain ALIDE_RS16030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS16030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS16030 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS16035 PF00710 Asparaginase, N-terminal ALIDE_RS16035 PF17763 Glutaminase/Asparaginase C-terminal domain ALIDE_RS16040 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS16045 PF03466 LysR substrate binding domain ALIDE_RS16045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS16050 PF00149 Calcineurin-like phosphoesterase ALIDE_RS16060 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS16065 PF00206 Lyase ALIDE_RS16065 PF14698 Argininosuccinate lyase C-terminal ALIDE_RS16070 PF07694 5TMR of 5TMR-LYT ALIDE_RS16070 PF06580 Histidine kinase ALIDE_RS16075 PF03180 NLPA lipoprotein ALIDE_RS16080 PF04293 SpoVR like protein ALIDE_RS16085 PF04285 Protein of unknown function (DUF444) ALIDE_RS16090 PF08298 PrkA AAA domain ALIDE_RS16090 PF06798 PrkA serine protein kinase C-terminal domain ALIDE_RS16095 PF02082 Transcriptional regulator ALIDE_RS16100 PF01814 Hemerythrin HHE cation binding domain ALIDE_RS16100 PF04405 Domain of Unknown function (DUF542) ALIDE_RS16105 PF01152 Bacterial-like globin ALIDE_RS16120 PF00248 Aldo/keto reductase family ALIDE_RS16125 PF04102 SlyX ALIDE_RS16130 PF00155 Aminotransferase class I and II ALIDE_RS16140 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS16145 PF01425 Amidase ALIDE_RS16150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS16150 PF03466 LysR substrate binding domain ALIDE_RS16155 PF00730 HhH-GPD superfamily base excision DNA repair protein ALIDE_RS16155 PF00633 Helix-hairpin-helix motif ALIDE_RS16155 PF10576 Iron-sulfur binding domain of endonuclease III ALIDE_RS16165 PF02277 Phosphoribosyltransferase ALIDE_RS16170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALIDE_RS16170 PF07685 CobB/CobQ-like glutamine amidotransferase domain ALIDE_RS16180 PF03186 CobD/Cbib protein ALIDE_RS16205 PF05567 Neisseria PilC beta-propeller domain ALIDE_RS16210 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor ALIDE_RS16210 PF07963 Prokaryotic N-terminal methylation motif ALIDE_RS16215 PF01872 RibD C-terminal domain ALIDE_RS16215 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALIDE_RS16220 PF13091 PLD-like domain ALIDE_RS16225 PF01207 Dihydrouridine synthase (Dus) ALIDE_RS16230 PF05175 Methyltransferase small domain ALIDE_RS16240 PF00171 Aldehyde dehydrogenase family ALIDE_RS16250 PF02861 Clp amino terminal domain, pathogenicity island component ALIDE_RS16250 PF00004 ATPase family associated with various cellular activities (AAA) ALIDE_RS16250 PF07724 AAA domain (Cdc48 subfamily) ALIDE_RS16250 PF17871 AAA lid domain ALIDE_RS16250 PF10431 C-terminal, D2-small domain, of ClpB protein ALIDE_RS16255 PF02391 MoaE protein ALIDE_RS16270 PF00701 Dihydrodipicolinate synthetase family ALIDE_RS16280 PF03453 MoeA N-terminal region (domain I and II) ALIDE_RS16280 PF03454 MoeA C-terminal region (domain IV) ALIDE_RS16280 PF00994 Probable molybdopterin binding domain ALIDE_RS16285 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ALIDE_RS16290 PF14821 Threonine synthase N terminus ALIDE_RS16290 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS16295 PF01850 PIN domain ALIDE_RS16305 PF00742 Homoserine dehydrogenase ALIDE_RS16305 PF01842 ACT domain ALIDE_RS16305 PF03447 Homoserine dehydrogenase, NAD binding domain ALIDE_RS16310 PF00155 Aminotransferase class I and II ALIDE_RS16315 PF04430 Protein of unknown function (DUF498/DUF598) ALIDE_RS16330 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS16335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS16335 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS16335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS16340 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS16340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS16340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS16345 PF00766 Electron transfer flavoprotein FAD-binding domain ALIDE_RS16345 PF01012 Electron transfer flavoprotein domain ALIDE_RS16350 PF01012 Electron transfer flavoprotein domain ALIDE_RS16355 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS16360 PF00108 Thiolase, N-terminal domain ALIDE_RS16360 PF02803 Thiolase, C-terminal domain ALIDE_RS16370 PF00108 Thiolase, N-terminal domain ALIDE_RS16370 PF02803 Thiolase, C-terminal domain ALIDE_RS16375 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS16380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS16380 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS16380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS16385 PF13380 CoA binding domain ALIDE_RS16385 PF13607 Succinyl-CoA ligase like flavodoxin domain ALIDE_RS16400 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS16405 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS16405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALIDE_RS16405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALIDE_RS16410 PF00665 Integrase core domain ALIDE_RS16410 PF13333 Integrase core domain ALIDE_RS16410 PF13276 HTH-like domain ALIDE_RS16420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS16420 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS16420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS16425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS16425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS16425 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS16430 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS16435 PF13577 SnoaL-like domain ALIDE_RS16440 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS16450 PF02515 CoA-transferase family III ALIDE_RS16465 PF02515 CoA-transferase family III ALIDE_RS16470 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS16475 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALIDE_RS16480 PF08241 Methyltransferase domain ALIDE_RS16485 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALIDE_RS16485 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALIDE_RS16490 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ALIDE_RS16495 PF00005 ABC transporter ALIDE_RS16500 PF01032 FecCD transport family ALIDE_RS16510 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase ALIDE_RS16515 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALIDE_RS16515 PF07685 CobB/CobQ-like glutamine amidotransferase domain ALIDE_RS16520 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS16520 PF00593 TonB dependent receptor ALIDE_RS16535 PF00563 EAL domain ALIDE_RS16535 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS16535 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS16550 PF04055 Radical SAM superfamily ALIDE_RS16550 PF06969 HemN C-terminal domain ALIDE_RS16555 PF13545 Crp-like helix-turn-helix domain ALIDE_RS16555 PF00027 Cyclic nucleotide-binding domain ALIDE_RS16570 PF13746 4Fe-4S dicluster domain ALIDE_RS16570 PF12801 4Fe-4S binding domain ALIDE_RS16570 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALIDE_RS16575 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS16575 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ALIDE_RS16590 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALIDE_RS16610 PF00501 AMP-binding enzyme ALIDE_RS16610 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS16615 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS16620 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS16630 PF07729 FCD domain ALIDE_RS16630 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS16635 PF01790 Prolipoprotein diacylglyceryl transferase ALIDE_RS16640 PF00210 Ferritin-like domain ALIDE_RS16650 PF00920 Dehydratase family ALIDE_RS16655 PF00920 Dehydratase family ALIDE_RS16665 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS16670 PF00005 ABC transporter ALIDE_RS16675 PF02687 FtsX-like permease family ALIDE_RS16675 PF12704 MacB-like periplasmic core domain ALIDE_RS16685 PF01368 DHH family ALIDE_RS16685 PF17768 RecJ OB domain ALIDE_RS16685 PF02272 DHHA1 domain ALIDE_RS16690 PF00672 HAMP domain ALIDE_RS16690 PF02203 Tar ligand binding domain homologue ALIDE_RS16690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS16695 PF02811 PHP domain ALIDE_RS16700 PF01300 Telomere recombination ALIDE_RS16705 PF02203 Tar ligand binding domain homologue ALIDE_RS16705 PF00672 HAMP domain ALIDE_RS16705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS16710 PF02163 Peptidase family M50 ALIDE_RS16715 PF00579 tRNA synthetases class I (W and Y) ALIDE_RS16720 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS16720 PF00072 Response regulator receiver domain ALIDE_RS16730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS16730 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS16735 PF02397 Bacterial sugar transferase ALIDE_RS16750 PF01062 Bestrophin, RFP-TM, chloride channel ALIDE_RS16755 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALIDE_RS16755 PF02403 Seryl-tRNA synthetase N-terminal domain ALIDE_RS16765 PF03471 Transporter associated domain ALIDE_RS16765 PF00571 CBS domain ALIDE_RS16765 PF01595 Cyclin M transmembrane N-terminal domain ALIDE_RS16770 PF02401 LytB protein ALIDE_RS16775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALIDE_RS16780 PF04002 RadC-like JAB domain ALIDE_RS16790 PF00488 MutS domain V ALIDE_RS16790 PF01713 Smr domain ALIDE_RS16795 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS16800 PF00330 Aconitase family (aconitate hydratase) ALIDE_RS16805 PF00694 Aconitase C-terminal domain ALIDE_RS16815 PF03354 Phage Terminase ALIDE_RS16820 PF01152 Bacterial-like globin ALIDE_RS16845 PF02634 FdhD/NarQ family ALIDE_RS16865 PF13247 4Fe-4S dicluster domain ALIDE_RS16870 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALIDE_RS16870 PF00384 Molybdopterin oxidoreductase ALIDE_RS16870 PF01568 Molydopterin dinucleotide binding domain ALIDE_RS16900 PF01568 Molydopterin dinucleotide binding domain ALIDE_RS16900 PF00384 Molybdopterin oxidoreductase ALIDE_RS16900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ALIDE_RS16900 PF12838 4Fe-4S dicluster domain ALIDE_RS16900 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALIDE_RS16905 PF10531 SLBB domain ALIDE_RS16905 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALIDE_RS16905 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALIDE_RS16910 PF03328 HpcH/HpaI aldolase/citrate lyase family ALIDE_RS16920 PF07729 FCD domain ALIDE_RS16920 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS16925 PF02515 CoA-transferase family III ALIDE_RS16930 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS16930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS16930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS16940 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS16950 PF10609 NUBPL iron-transfer P-loop NTPase ALIDE_RS16955 PF03595 Voltage-dependent anion channel ALIDE_RS16960 PF02769 AIR synthase related protein, C-terminal domain ALIDE_RS16960 PF00586 AIR synthase related protein, N-terminal domain ALIDE_RS16965 PF00581 Rhodanese-like domain ALIDE_RS16980 PF01588 Putative tRNA binding domain ALIDE_RS16980 PF09334 tRNA synthetases class I (M) ALIDE_RS16990 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS16990 PF00155 Aminotransferase class I and II ALIDE_RS16995 PF03594 Benzoate membrane transport protein ALIDE_RS17000 PF01168 Alanine racemase, N-terminal domain ALIDE_RS17005 PF00117 Glutamine amidotransferase class-I ALIDE_RS17010 PF12833 Helix-turn-helix domain ALIDE_RS17010 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term ALIDE_RS17015 PF00890 FAD binding domain ALIDE_RS17020 PF01070 FMN-dependent dehydrogenase ALIDE_RS17025 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALIDE_RS17025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALIDE_RS17040 PF02616 Segregation and condensation protein ScpA ALIDE_RS17055 PF00890 FAD binding domain ALIDE_RS17055 PF02910 Fumarate reductase flavoprotein C-term ALIDE_RS17065 PF04715 Anthranilate synthase component I, N terminal region ALIDE_RS17065 PF00425 chorismate binding enzyme ALIDE_RS17070 PF02445 Quinolinate synthetase A protein ALIDE_RS17075 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALIDE_RS17075 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALIDE_RS17080 PF02548 Ketopantoate hydroxymethyltransferase ALIDE_RS17085 PF02569 Pantoate-beta-alanine ligase ALIDE_RS17090 PF03466 LysR substrate binding domain ALIDE_RS17090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS17095 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17100 PF07171 MlrC C-terminus ALIDE_RS17100 PF07364 Metallopeptidase family M81 ALIDE_RS17105 PF01925 Sulfite exporter TauE/SafE ALIDE_RS17110 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17120 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALIDE_RS17120 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ALIDE_RS17125 PF02556 Preprotein translocase subunit SecB ALIDE_RS17130 PF00462 Glutaredoxin ALIDE_RS17135 PF00581 Rhodanese-like domain ALIDE_RS17140 PF00300 Histidine phosphatase superfamily (branch 1) ALIDE_RS17145 PF03572 Peptidase family S41 ALIDE_RS17145 PF13180 PDZ domain ALIDE_RS17150 PF00899 ThiF family ALIDE_RS17160 PF00196 Bacterial regulatory proteins, luxR family ALIDE_RS17160 PF00072 Response regulator receiver domain ALIDE_RS17165 PF17200 Single Cache domain 2 ALIDE_RS17165 PF07730 Histidine kinase ALIDE_RS17180 PF04972 BON domain ALIDE_RS17185 PF01467 Cytidylyltransferase-like ALIDE_RS17195 PF05193 Peptidase M16 inactive domain ALIDE_RS17200 PF05193 Peptidase M16 inactive domain ALIDE_RS17200 PF00675 Insulinase (Peptidase family M16) ALIDE_RS17205 PF02881 SRP54-type protein, helical bundle domain ALIDE_RS17205 PF00448 SRP54-type protein, GTPase domain ALIDE_RS17210 PF03466 LysR substrate binding domain ALIDE_RS17210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS17215 PF00701 Dihydrodipicolinate synthetase family ALIDE_RS17220 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17230 PF13378 Enolase C-terminal domain-like ALIDE_RS17240 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17245 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17250 PF00330 Aconitase family (aconitate hydratase) ALIDE_RS17250 PF00694 Aconitase C-terminal domain ALIDE_RS17260 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS17260 PF01464 Transglycosylase SLT domain ALIDE_RS17265 PF10282 Lactonase, 7-bladed beta-propeller ALIDE_RS17270 PF00107 Zinc-binding dehydrogenase ALIDE_RS17270 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS17285 PF00072 Response regulator receiver domain ALIDE_RS17285 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS17290 PF08521 Two-component sensor kinase N-terminal ALIDE_RS17290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS17290 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS17300 PF01292 Prokaryotic cytochrome b561 ALIDE_RS17310 PF00873 AcrB/AcrD/AcrF family ALIDE_RS17330 PF00140 Sigma-70 factor, region 1.2 ALIDE_RS17330 PF04542 Sigma-70 region 2 ALIDE_RS17330 PF04545 Sigma-70, region 4 ALIDE_RS17335 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17340 PF02630 SCO1/SenC ALIDE_RS17345 PF01040 UbiA prenyltransferase family ALIDE_RS17370 PF00510 Cytochrome c oxidase subunit III ALIDE_RS17380 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 ALIDE_RS17385 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALIDE_RS17390 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ALIDE_RS17390 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALIDE_RS17395 PF08241 Methyltransferase domain ALIDE_RS17405 PF00588 SpoU rRNA Methylase family ALIDE_RS17410 PF03466 LysR substrate binding domain ALIDE_RS17410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS17420 PF07015 VirC1 protein ALIDE_RS17425 PF01810 LysE type translocator ALIDE_RS17430 PF02254 TrkA-N domain ALIDE_RS17430 PF00999 Sodium/hydrogen exchanger family ALIDE_RS17435 PF07702 UTRA domain ALIDE_RS17435 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS17445 PF00330 Aconitase family (aconitate hydratase) ALIDE_RS17450 PF00694 Aconitase C-terminal domain ALIDE_RS17455 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17460 PF04303 PrpF protein ALIDE_RS17470 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17475 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17480 PF01546 Peptidase family M20/M25/M40 ALIDE_RS17480 PF07687 Peptidase dimerisation domain ALIDE_RS17485 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17490 PF03466 LysR substrate binding domain ALIDE_RS17490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS17495 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17500 PF00106 short chain dehydrogenase ALIDE_RS17505 PF00108 Thiolase, N-terminal domain ALIDE_RS17505 PF02803 Thiolase, C-terminal domain ALIDE_RS17510 PF01144 Coenzyme A transferase ALIDE_RS17515 PF01144 Coenzyme A transferase ALIDE_RS17520 PF09339 IclR helix-turn-helix domain ALIDE_RS17520 PF01614 Bacterial transcriptional regulator ALIDE_RS17535 PF00034 Cytochrome c ALIDE_RS17540 PF10431 C-terminal, D2-small domain, of ClpB protein ALIDE_RS17540 PF06689 ClpX C4-type zinc finger ALIDE_RS17540 PF07724 AAA domain (Cdc48 subfamily) ALIDE_RS17550 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS17555 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS17560 PF02515 CoA-transferase family III ALIDE_RS17565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS17565 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS17565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS17570 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS17590 PF04357 TamB, inner membrane protein subunit of TAM complex ALIDE_RS17620 PF00182 Chitinase class I ALIDE_RS17705 PF02413 Caudovirales tail fibre assembly protein, lambda gpK ALIDE_RS17875 PF00145 C-5 cytosine-specific DNA methylase ALIDE_RS17915 PF09125 Cytochrome C oxidase subunit II, transmembrane ALIDE_RS17915 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALIDE_RS17920 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALIDE_RS17925 PF01040 UbiA prenyltransferase family ALIDE_RS17945 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALIDE_RS17950 PF00970 Oxidoreductase FAD-binding domain ALIDE_RS17950 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS17950 PF00175 Oxidoreductase NAD-binding domain ALIDE_RS17955 PF13091 PLD-like domain ALIDE_RS17955 PF13396 Phospholipase_D-nuclease N-terminal ALIDE_RS17960 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS17960 PF08521 Two-component sensor kinase N-terminal ALIDE_RS17960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS17965 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS17965 PF00072 Response regulator receiver domain ALIDE_RS17970 PF13180 PDZ domain ALIDE_RS17975 PF03960 ArsC family ALIDE_RS17980 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS17985 PF00005 ABC transporter ALIDE_RS17985 PF08402 TOBE domain ALIDE_RS17990 PF01553 Acyltransferase ALIDE_RS17995 PF01979 Amidohydrolase family ALIDE_RS18000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALIDE_RS18000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALIDE_RS18005 PF00156 Phosphoribosyl transferase domain ALIDE_RS18010 PF03652 Holliday junction resolvase ALIDE_RS18015 PF02622 Uncharacterized ACR, COG1678 ALIDE_RS18020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS18020 PF01627 Hpt domain ALIDE_RS18020 PF00072 Response regulator receiver domain ALIDE_RS18020 PF01584 CheW-like domain ALIDE_RS18020 PF02895 Signal transducing histidine kinase, homodimeric domain ALIDE_RS18025 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ALIDE_RS18025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS18035 PF00072 Response regulator receiver domain ALIDE_RS18040 PF00072 Response regulator receiver domain ALIDE_RS18050 PF00202 Aminotransferase class-III ALIDE_RS18055 PF01808 AICARFT/IMPCHase bienzyme ALIDE_RS18055 PF02142 MGS-like domain ALIDE_RS18060 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS18065 PF01207 Dihydrouridine synthase (Dus) ALIDE_RS18070 PF09335 SNARE associated Golgi protein ALIDE_RS18075 PF03466 LysR substrate binding domain ALIDE_RS18075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS18080 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS18085 PF01546 Peptidase family M20/M25/M40 ALIDE_RS18090 PF01970 Tripartite tricarboxylate transporter TctA family ALIDE_RS18095 PF07331 Tripartite tricarboxylate transporter TctB family ALIDE_RS18100 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS18100 PF00672 HAMP domain ALIDE_RS18100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS18105 PF00072 Response regulator receiver domain ALIDE_RS18105 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS18110 PF06071 Protein of unknown function (DUF933) ALIDE_RS18110 PF01926 50S ribosome-binding GTPase ALIDE_RS18115 PF01494 FAD binding domain ALIDE_RS18120 PF13098 Thioredoxin-like domain ALIDE_RS18120 PF10411 Disulfide bond isomerase protein N-terminus ALIDE_RS18130 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS18145 PF01938 TRAM domain ALIDE_RS18145 PF04055 Radical SAM superfamily ALIDE_RS18145 PF00919 Uncharacterized protein family UPF0004 ALIDE_RS18150 PF02978 Signal peptide binding domain ALIDE_RS18150 PF00448 SRP54-type protein, GTPase domain ALIDE_RS18150 PF02881 SRP54-type protein, helical bundle domain ALIDE_RS18155 PF01578 Cytochrome C assembly protein ALIDE_RS18165 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS18165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS18170 PF00158 Sigma-54 interaction domain ALIDE_RS18170 PF00072 Response regulator receiver domain ALIDE_RS18170 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS18175 PF01510 N-acetylmuramoyl-L-alanine amidase ALIDE_RS18180 PF03477 ATP cone domain ALIDE_RS18180 PF02867 Ribonucleotide reductase, barrel domain ALIDE_RS18180 PF00317 Ribonucleotide reductase, all-alpha domain ALIDE_RS18185 PF00268 Ribonucleotide reductase, small chain ALIDE_RS18195 PF00294 pfkB family carbohydrate kinase ALIDE_RS18210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS18210 PF00289 Biotin carboxylase, N-terminal domain ALIDE_RS18210 PF02785 Biotin carboxylase C-terminal domain ALIDE_RS18215 PF00364 Biotin-requiring enzyme ALIDE_RS18220 PF00578 AhpC/TSA family ALIDE_RS18230 PF01225 Mur ligase family, catalytic domain ALIDE_RS18230 PF02875 Mur ligase family, glutamate ligase domain ALIDE_RS18230 PF08245 Mur ligase middle domain ALIDE_RS18240 PF00793 DAHP synthetase I family ALIDE_RS18245 PF01523 Putative modulator of DNA gyrase ALIDE_RS18250 PF01098 Cell cycle protein ALIDE_RS18255 PF05728 Uncharacterised protein family (UPF0227) ALIDE_RS18265 PF00034 Cytochrome c ALIDE_RS18275 PF08281 Sigma-70, region 4 ALIDE_RS18275 PF04542 Sigma-70 region 2 ALIDE_RS18280 PF00773 RNB domain ALIDE_RS18290 PF08501 Shikimate dehydrogenase substrate binding domain ALIDE_RS18290 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ALIDE_RS18290 PF01488 Shikimate / quinate 5-dehydrogenase ALIDE_RS18295 PF00912 Transglycosylase ALIDE_RS18305 PF13276 HTH-like domain ALIDE_RS18305 PF13683 Integrase core domain ALIDE_RS18310 PF01527 Transposase ALIDE_RS18315 PF02075 Crossover junction endodeoxyribonuclease RuvC ALIDE_RS18325 PF08241 Methyltransferase domain ALIDE_RS18330 PF01964 Radical SAM ThiC family ALIDE_RS18330 PF13667 ThiC-associated domain ALIDE_RS18335 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ALIDE_RS18350 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS18350 PF00501 AMP-binding enzyme ALIDE_RS18365 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS18370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS18370 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS18370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS18375 PF00091 Tubulin/FtsZ family, GTPase domain ALIDE_RS18375 PF12327 FtsZ family, C-terminal domain ALIDE_RS18380 PF02491 SHS2 domain inserted in FTSA ALIDE_RS18385 PF08478 POTRA domain, FtsQ-type ALIDE_RS18385 PF03799 Cell division protein FtsQ ALIDE_RS18390 PF01820 D-ala D-ala ligase N-terminus ALIDE_RS18390 PF07478 D-ala D-ala ligase C-terminus ALIDE_RS18395 PF08245 Mur ligase middle domain ALIDE_RS18395 PF02875 Mur ligase family, glutamate ligase domain ALIDE_RS18395 PF01225 Mur ligase family, catalytic domain ALIDE_RS18400 PF03033 Glycosyltransferase family 28 N-terminal domain ALIDE_RS18400 PF04101 Glycosyltransferase family 28 C-terminal domain ALIDE_RS18405 PF01098 Cell cycle protein ALIDE_RS18410 PF02875 Mur ligase family, glutamate ligase domain ALIDE_RS18410 PF08245 Mur ligase middle domain ALIDE_RS18415 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ALIDE_RS18415 PF00953 Glycosyl transferase family 4 ALIDE_RS18420 PF02875 Mur ligase family, glutamate ligase domain ALIDE_RS18420 PF08245 Mur ligase middle domain ALIDE_RS18420 PF01225 Mur ligase family, catalytic domain ALIDE_RS18425 PF08245 Mur ligase middle domain ALIDE_RS18425 PF02875 Mur ligase family, glutamate ligase domain ALIDE_RS18430 PF03717 Penicillin-binding Protein dimerisation domain ALIDE_RS18430 PF00905 Penicillin binding protein transpeptidase domain ALIDE_RS18440 PF01795 MraW methylase family ALIDE_RS18445 PF02381 MraZ protein, putative antitoxin-like ALIDE_RS18450 PF07724 AAA domain (Cdc48 subfamily) ALIDE_RS18450 PF00004 ATPase family associated with various cellular activities (AAA) ALIDE_RS18455 PF00227 Proteasome subunit ALIDE_RS18465 PF01258 Prokaryotic dksA/traR C4-type zinc finger ALIDE_RS18470 PF02492 CobW/HypB/UreG, nucleotide-binding domain ALIDE_RS18470 PF07683 Cobalamin synthesis protein cobW C-terminal domain ALIDE_RS18485 PF01339 CheB methylesterase ALIDE_RS18485 PF00072 Response regulator receiver domain ALIDE_RS18490 PF00072 Response regulator receiver domain ALIDE_RS18490 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS18500 PF00072 Response regulator receiver domain ALIDE_RS18500 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS18505 PF00072 Response regulator receiver domain ALIDE_RS18505 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS18510 PF11849 Domain of unknown function (DUF3369) ALIDE_RS18520 PF01627 Hpt domain ALIDE_RS18520 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS18520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS18520 PF00672 HAMP domain ALIDE_RS18520 PF00072 Response regulator receiver domain ALIDE_RS18520 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALIDE_RS18525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS18525 PF00672 HAMP domain ALIDE_RS18525 PF02203 Tar ligand binding domain homologue ALIDE_RS18530 PF00589 Phage integrase family ALIDE_RS18530 PF02899 Phage integrase, N-terminal SAM-like domain ALIDE_RS18540 PF01678 Diaminopimelate epimerase ALIDE_RS18550 PF00849 RNA pseudouridylate synthase ALIDE_RS18550 PF01479 S4 domain ALIDE_RS18560 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS18580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS18580 PF03466 LysR substrate binding domain ALIDE_RS18585 PF03328 HpcH/HpaI aldolase/citrate lyase family ALIDE_RS18590 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS18595 PF02515 CoA-transferase family III ALIDE_RS18600 PF04909 Amidohydrolase ALIDE_RS18605 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS18610 PF12802 MarR family ALIDE_RS18620 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS18625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS18625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS18625 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS18630 PF00501 AMP-binding enzyme ALIDE_RS18630 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS18635 PF01012 Electron transfer flavoprotein domain ALIDE_RS18635 PF00766 Electron transfer flavoprotein FAD-binding domain ALIDE_RS18640 PF01012 Electron transfer flavoprotein domain ALIDE_RS18645 PF03060 Nitronate monooxygenase ALIDE_RS18650 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS18655 PF02515 CoA-transferase family III ALIDE_RS18665 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS18670 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS18670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS18670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS18675 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS18675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS18675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS18680 PF00108 Thiolase, N-terminal domain ALIDE_RS18680 PF02803 Thiolase, C-terminal domain ALIDE_RS18685 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALIDE_RS18685 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS18685 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALIDE_RS18690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS18690 PF03466 LysR substrate binding domain ALIDE_RS18710 PF01527 Transposase ALIDE_RS18715 PF13333 Integrase core domain ALIDE_RS18715 PF00665 Integrase core domain ALIDE_RS18715 PF13276 HTH-like domain ALIDE_RS18720 PF13683 Integrase core domain ALIDE_RS18720 PF13276 HTH-like domain ALIDE_RS18725 PF01527 Transposase ALIDE_RS18730 PF13005 zinc-finger binding domain of transposase IS66 ALIDE_RS18730 PF13817 IS66 C-terminal element ALIDE_RS18730 PF13007 Transposase C of IS166 homeodomain ALIDE_RS18730 PF03050 Transposase IS66 family ALIDE_RS18750 PF01435 Peptidase family M48 ALIDE_RS18760 PF01979 Amidohydrolase family ALIDE_RS18770 PF04343 Protein of unknown function, DUF488 ALIDE_RS18775 PF02627 Carboxymuconolactone decarboxylase family ALIDE_RS18780 PF17760 UvrA interaction domain ALIDE_RS18780 PF17755 UvrA DNA-binding domain ALIDE_RS18780 PF00005 ABC transporter ALIDE_RS18785 PF13458 Periplasmic binding protein ALIDE_RS18790 PF13609 Gram-negative porin ALIDE_RS18795 PF00083 Sugar (and other) transporter ALIDE_RS18795 PF08946 Osmosensory transporter coiled coil ALIDE_RS18805 PF00474 Sodium:solute symporter family ALIDE_RS18820 PF01323 DSBA-like thioredoxin domain ALIDE_RS18835 PF00682 HMGL-like ALIDE_RS18840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALIDE_RS18845 PF00364 Biotin-requiring enzyme ALIDE_RS18845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS18845 PF00289 Biotin carboxylase, N-terminal domain ALIDE_RS18845 PF02785 Biotin carboxylase C-terminal domain ALIDE_RS18855 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS18860 PF01039 Carboxyl transferase domain ALIDE_RS18865 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS18865 PF00501 AMP-binding enzyme ALIDE_RS18880 PF00732 GMC oxidoreductase ALIDE_RS18880 PF05199 GMC oxidoreductase ALIDE_RS18885 PF13458 Periplasmic binding protein ALIDE_RS18890 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS18895 PF00005 ABC transporter ALIDE_RS18895 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS18900 PF00005 ABC transporter ALIDE_RS18905 PF05199 GMC oxidoreductase ALIDE_RS18905 PF00732 GMC oxidoreductase ALIDE_RS18910 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS18910 PF00501 AMP-binding enzyme ALIDE_RS18915 PF00155 Aminotransferase class I and II ALIDE_RS18920 PF00368 Hydroxymethylglutaryl-coenzyme A reductase ALIDE_RS18925 PF13419 Haloacid dehalogenase-like hydrolase ALIDE_RS18930 PF01590 GAF domain ALIDE_RS18930 PF00563 EAL domain ALIDE_RS18930 PF00360 Phytochrome region ALIDE_RS18930 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS18935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALIDE_RS18945 PF08448 PAS fold ALIDE_RS18945 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS18945 PF00563 EAL domain ALIDE_RS18970 PF03575 Peptidase family S51 ALIDE_RS18985 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS19000 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS19000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS19000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS19010 PF00108 Thiolase, N-terminal domain ALIDE_RS19010 PF02803 Thiolase, C-terminal domain ALIDE_RS19015 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) ALIDE_RS19020 PF00484 Carbonic anhydrase ALIDE_RS19025 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS19025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS19025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS19030 PF13411 MerR HTH family regulatory protein ALIDE_RS19060 PF12848 ABC transporter ALIDE_RS19060 PF00005 ABC transporter ALIDE_RS19060 PF16326 ABC transporter C-terminal domain ALIDE_RS19065 PF01339 CheB methylesterase ALIDE_RS19065 PF00072 Response regulator receiver domain ALIDE_RS19070 PF03975 CheD chemotactic sensory transduction ALIDE_RS19075 PF03705 CheR methyltransferase, all-alpha domain ALIDE_RS19075 PF01739 CheR methyltransferase, SAM binding domain ALIDE_RS19080 PF01584 CheW-like domain ALIDE_RS19085 PF01584 CheW-like domain ALIDE_RS19085 PF09078 CheY binding ALIDE_RS19085 PF02895 Signal transducing histidine kinase, homodimeric domain ALIDE_RS19085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS19085 PF01627 Hpt domain ALIDE_RS19090 PF00072 Response regulator receiver domain ALIDE_RS19100 PF05384 Sensor protein DegS ALIDE_RS19100 PF07730 Histidine kinase ALIDE_RS19100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS19105 PF00072 Response regulator receiver domain ALIDE_RS19105 PF00196 Bacterial regulatory proteins, luxR family ALIDE_RS19110 PF01311 Bacterial export proteins, family 1 ALIDE_RS19115 PF01313 Bacterial export proteins, family 3 ALIDE_RS19120 PF00813 FliP family ALIDE_RS19130 PF16973 Flagellar motor switch protein FliN N-terminal ALIDE_RS19130 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALIDE_RS19135 PF02154 Flagellar motor switch protein FliM ALIDE_RS19135 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALIDE_RS19155 PF18269 T3SS EscN ATPase C-terminal domain ALIDE_RS19155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALIDE_RS19165 PF14842 FliG N-terminal domain ALIDE_RS19165 PF14841 FliG middle domain ALIDE_RS19165 PF01706 FliG C-terminal domain ALIDE_RS19170 PF08345 Flagellar M-ring protein C-terminal ALIDE_RS19170 PF01514 Secretory protein of YscJ/FliF family ALIDE_RS19175 PF02049 Flagellar hook-basal body complex protein FliE ALIDE_RS19190 PF07196 Flagellin hook IN motif ALIDE_RS19190 PF07195 Flagellar hook-associated protein 2 C-terminus ALIDE_RS19190 PF02465 Flagellar hook-associated protein 2 N-terminus ALIDE_RS19195 PF00700 Bacterial flagellin C-terminal helical region ALIDE_RS19195 PF00669 Bacterial flagellin N-terminal helical region ALIDE_RS19200 PF00669 Bacterial flagellin N-terminal helical region ALIDE_RS19200 PF00700 Bacterial flagellin C-terminal helical region ALIDE_RS19200 PF07196 Flagellin hook IN motif ALIDE_RS19205 PF05045 Rhamnan synthesis protein F ALIDE_RS19205 PF14307 Glycosyltransferase WbsX ALIDE_RS19210 PF01618 MotA/TolQ/ExbB proton channel family ALIDE_RS19215 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALIDE_RS19215 PF00691 OmpA family ALIDE_RS19220 PF00072 Response regulator receiver domain ALIDE_RS19225 PF04344 Chemotaxis phosphatase, CheZ ALIDE_RS19230 PF01312 FlhB HrpN YscU SpaS Family ALIDE_RS19235 PF00771 FHIPEP family ALIDE_RS19240 PF00448 SRP54-type protein, GTPase domain ALIDE_RS19250 PF04545 Sigma-70, region 4 ALIDE_RS19250 PF04539 Sigma-70 region 3 ALIDE_RS19250 PF04542 Sigma-70 region 2 ALIDE_RS19265 PF13144 Chaperone for flagella basal body P-ring formation ALIDE_RS19270 PF00460 Flagella basal body rod protein ALIDE_RS19275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALIDE_RS19275 PF00460 Flagella basal body rod protein ALIDE_RS19280 PF13860 FlgD Ig-like domain ALIDE_RS19280 PF13861 FlgD Tudor-like domain ALIDE_RS19280 PF03963 Flagellar hook capping protein - N-terminal region ALIDE_RS19285 PF07559 Flagellar basal body protein FlaE ALIDE_RS19285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALIDE_RS19285 PF00460 Flagella basal body rod protein ALIDE_RS19290 PF00460 Flagella basal body rod protein ALIDE_RS19290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALIDE_RS19295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALIDE_RS19295 PF00460 Flagella basal body rod protein ALIDE_RS19300 PF02107 Flagellar L-ring protein ALIDE_RS19305 PF02119 Flagellar P-ring protein ALIDE_RS19310 PF10135 Rod binding protein ALIDE_RS19310 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ALIDE_RS19320 PF00669 Bacterial flagellin N-terminal helical region ALIDE_RS19330 PF03060 Nitronate monooxygenase ALIDE_RS19335 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS19335 PF00155 Aminotransferase class I and II ALIDE_RS19345 PF00892 EamA-like transporter family ALIDE_RS19350 PF00155 Aminotransferase class I and II ALIDE_RS19355 PF02567 Phenazine biosynthesis-like protein ALIDE_RS19360 PF00291 Pyridoxal-phosphate dependent enzyme ALIDE_RS19385 PF01590 GAF domain ALIDE_RS19385 PF00360 Phytochrome region ALIDE_RS19385 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS19385 PF00563 EAL domain ALIDE_RS19405 PF02633 Creatinine amidohydrolase ALIDE_RS19410 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS19435 PF01208 Uroporphyrinogen decarboxylase (URO-D) ALIDE_RS19440 PF18074 Primosomal protein N C-terminal domain ALIDE_RS19440 PF17764 3′ DNA-binding domain (3′BD) ALIDE_RS19440 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ALIDE_RS19440 PF00271 Helicase conserved C-terminal domain ALIDE_RS19440 PF00270 DEAD/DEAH box helicase ALIDE_RS19445 PF02803 Thiolase, C-terminal domain ALIDE_RS19445 PF00108 Thiolase, N-terminal domain ALIDE_RS19450 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS19455 PF00501 AMP-binding enzyme ALIDE_RS19465 PF00501 AMP-binding enzyme ALIDE_RS19470 PF00005 ABC transporter ALIDE_RS19490 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS19490 PF00005 ABC transporter ALIDE_RS19500 PF03547 Membrane transport protein ALIDE_RS19505 PF13361 UvrD-like helicase C-terminal domain ALIDE_RS19505 PF00580 UvrD/REP helicase N-terminal domain ALIDE_RS19515 PF02253 Phospholipase A1 ALIDE_RS19520 PF03781 Sulfatase-modifying factor enzyme 1 ALIDE_RS19525 PF00884 Sulfatase ALIDE_RS19530 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALIDE_RS19535 PF01494 FAD binding domain ALIDE_RS19540 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALIDE_RS19545 PF13609 Gram-negative porin ALIDE_RS19550 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS19550 PF07729 FCD domain ALIDE_RS19560 PF00582 Universal stress protein family ALIDE_RS19565 PF01702 Queuine tRNA-ribosyltransferase ALIDE_RS19585 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS19590 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS19595 PF03737 Aldolase/RraA ALIDE_RS19605 PF00501 AMP-binding enzyme ALIDE_RS19605 PF01553 Acyltransferase ALIDE_RS19610 PF00004 ATPase family associated with various cellular activities (AAA) ALIDE_RS19610 PF17862 AAA+ lid domain ALIDE_RS19610 PF06480 FtsH Extracellular ALIDE_RS19610 PF01434 Peptidase family M41 ALIDE_RS19615 PF00156 Phosphoribosyl transferase domain ALIDE_RS19620 PF01738 Dienelactone hydrolase family ALIDE_RS19620 PF00156 Phosphoribosyl transferase domain ALIDE_RS19625 PF01738 Dienelactone hydrolase family ALIDE_RS19625 PF00156 Phosphoribosyl transferase domain ALIDE_RS19630 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS19635 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS19640 PF13454 FAD-NAD(P)-binding ALIDE_RS19665 PF13350 Tyrosine phosphatase family ALIDE_RS19675 PF01196 Ribosomal protein L17 ALIDE_RS19680 PF01000 RNA polymerase Rpb3/RpoA insert domain ALIDE_RS19680 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ALIDE_RS19680 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ALIDE_RS19685 PF01479 S4 domain ALIDE_RS19685 PF00163 Ribosomal protein S4/S9 N-terminal domain ALIDE_RS19690 PF00411 Ribosomal protein S11 ALIDE_RS19695 PF00416 Ribosomal protein S13/S18 ALIDE_RS19700 PF00444 Ribosomal protein L36 ALIDE_RS19705 PF00344 SecY translocase ALIDE_RS19710 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ALIDE_RS19715 PF00327 Ribosomal protein L30p/L7e ALIDE_RS19720 PF03719 Ribosomal protein S5, C-terminal domain ALIDE_RS19720 PF00333 Ribosomal protein S5, N-terminal domain ALIDE_RS19725 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ALIDE_RS19730 PF00347 Ribosomal protein L6 ALIDE_RS19735 PF00410 Ribosomal protein S8 ALIDE_RS19740 PF00253 Ribosomal protein S14p/S29e ALIDE_RS19745 PF00673 ribosomal L5P family C-terminus ALIDE_RS19745 PF00281 Ribosomal protein L5 ALIDE_RS19750 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ALIDE_RS19755 PF00238 Ribosomal protein L14p/L23e ALIDE_RS19760 PF01266 FAD dependent oxidoreductase ALIDE_RS19760 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ALIDE_RS19765 PF00455 DeoR C terminal sensor domain ALIDE_RS19765 PF08220 DeoR-like helix-turn-helix domain ALIDE_RS19770 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ALIDE_RS19770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ALIDE_RS19775 PF14748 Pyrroline-5-carboxylate reductase dimerisation ALIDE_RS19775 PF03807 NADP oxidoreductase coenzyme F420-dependent ALIDE_RS19785 PF01040 UbiA prenyltransferase family ALIDE_RS19790 PF00210 Ferritin-like domain ALIDE_RS19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS19795 PF03466 LysR substrate binding domain ALIDE_RS19800 PF17191 RecG wedge domain ALIDE_RS19800 PF00271 Helicase conserved C-terminal domain ALIDE_RS19800 PF00270 DEAD/DEAH box helicase ALIDE_RS19805 PF01966 HD domain ALIDE_RS19805 PF11871 Domain of unknown function (DUF3391) ALIDE_RS19810 PF02547 Queuosine biosynthesis protein ALIDE_RS19825 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS19830 PF03466 LysR substrate binding domain ALIDE_RS19830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS19835 PF03167 Uracil DNA glycosylase superfamily ALIDE_RS19840 PF00218 Indole-3-glycerol phosphate synthase ALIDE_RS19845 PF00591 Glycosyl transferase family, a/b domain ALIDE_RS19845 PF02885 Glycosyl transferase family, helical bundle domain ALIDE_RS19850 PF00117 Glutamine amidotransferase class-I ALIDE_RS19865 PF13614 AAA domain ALIDE_RS19900 PF00436 Single-strand binding protein family ALIDE_RS19905 PF01131 DNA topoisomerase ALIDE_RS19905 PF01751 Toprim domain ALIDE_RS19910 PF01695 IstB-like ATP binding protein ALIDE_RS19915 PF00665 Integrase core domain ALIDE_RS20030 PF04002 RadC-like JAB domain ALIDE_RS20100 PF00665 Integrase core domain ALIDE_RS20105 PF01695 IstB-like ATP binding protein ALIDE_RS20135 PF00425 chorismate binding enzyme ALIDE_RS20135 PF04715 Anthranilate synthase component I, N terminal region ALIDE_RS20140 PF02203 Tar ligand binding domain homologue ALIDE_RS20140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS20140 PF00672 HAMP domain ALIDE_RS20145 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS20145 PF00563 EAL domain ALIDE_RS20145 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS20150 PF13419 Haloacid dehalogenase-like hydrolase ALIDE_RS20160 PF00834 Ribulose-phosphate 3 epimerase family ALIDE_RS20165 PF04379 ApaG domain ALIDE_RS20180 PF04107 Glutamate-cysteine ligase family 2(GCS2) ALIDE_RS20185 PF02769 AIR synthase related protein, C-terminal domain ALIDE_RS20185 PF00586 AIR synthase related protein, N-terminal domain ALIDE_RS20190 PF00440 Bacterial regulatory proteins, tetR family ALIDE_RS20190 PF08361 MAATS-type transcriptional repressor, C-terminal region ALIDE_RS20195 PF00561 alpha/beta hydrolase fold ALIDE_RS20195 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ALIDE_RS20200 PF02321 Outer membrane efflux protein ALIDE_RS20205 PF13533 Biotin-lipoyl like ALIDE_RS20210 PF00005 ABC transporter ALIDE_RS20220 PF01515 Phosphate acetyl/butaryl transferase ALIDE_RS20225 PF00871 Acetokinase family ALIDE_RS20230 PF04608 Phosphatidylglycerophosphatase A ALIDE_RS20235 PF02464 Competence-damaged protein ALIDE_RS20240 PF00672 HAMP domain ALIDE_RS20240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS20240 PF02203 Tar ligand binding domain homologue ALIDE_RS20245 PF00563 EAL domain ALIDE_RS20245 PF03707 Bacterial signalling protein N terminal repeat ALIDE_RS20245 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS20250 PF00072 Response regulator receiver domain ALIDE_RS20250 PF03861 ANTAR domain ALIDE_RS20255 PF13426 PAS domain ALIDE_RS20255 PF07536 HWE histidine kinase ALIDE_RS20260 PF02810 SEC-C motif ALIDE_RS20260 PF03695 Uncharacterised protein family (UPF0149) ALIDE_RS20270 PF02926 THUMP domain ALIDE_RS20270 PF01170 Putative RNA methylase family UPF0020 ALIDE_RS20275 PF02743 Cache domain ALIDE_RS20275 PF00672 HAMP domain ALIDE_RS20275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS20285 PF04963 Sigma-54 factor, core binding domain ALIDE_RS20285 PF04552 Sigma-54, DNA binding domain ALIDE_RS20285 PF00309 Sigma-54 factor, Activator interacting domain (AID) ALIDE_RS20290 PF00005 ABC transporter ALIDE_RS20300 PF00085 Thioredoxin ALIDE_RS20300 PF01323 DSBA-like thioredoxin domain ALIDE_RS20310 PF03485 Arginyl tRNA synthetase N terminal domain ALIDE_RS20310 PF05746 DALR anticodon binding domain ALIDE_RS20310 PF00750 tRNA synthetases class I (R) ALIDE_RS20325 PF00375 Sodium:dicarboxylate symporter family ALIDE_RS20330 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS20330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS20335 PF00072 Response regulator receiver domain ALIDE_RS20335 PF00196 Bacterial regulatory proteins, luxR family ALIDE_RS20340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS20340 PF03466 LysR substrate binding domain ALIDE_RS20345 PF01274 Malate synthase ALIDE_RS20350 PF01361 Tautomerase enzyme ALIDE_RS20360 PF13230 Glutamine amidotransferases class-II ALIDE_RS20390 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ALIDE_RS20390 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ALIDE_RS20395 PF03594 Benzoate membrane transport protein ALIDE_RS20400 PF02705 K+ potassium transporter ALIDE_RS20410 PF02386 Cation transport protein ALIDE_RS20415 PF02254 TrkA-N domain ALIDE_RS20415 PF02080 TrkA-C domain ALIDE_RS20420 PF00171 Aldehyde dehydrogenase family ALIDE_RS20445 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ALIDE_RS20445 PF06144 DNA polymerase III, delta subunit ALIDE_RS20455 PF00133 tRNA synthetases class I (I, L, M and V) ALIDE_RS20455 PF09334 tRNA synthetases class I (M) ALIDE_RS20455 PF08264 Anticodon-binding domain of tRNA ALIDE_RS20455 PF13603 Leucyl-tRNA synthetase, Domain 2 ALIDE_RS20460 PF00924 Mechanosensitive ion channel ALIDE_RS20465 PF00171 Aldehyde dehydrogenase family ALIDE_RS20470 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS20470 PF00593 TonB dependent receptor ALIDE_RS20475 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS20475 PF01590 GAF domain ALIDE_RS20475 PF00158 Sigma-54 interaction domain ALIDE_RS20480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALIDE_RS20485 PF13426 PAS domain ALIDE_RS20485 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS20485 PF00563 EAL domain ALIDE_RS20490 PF02472 Biopolymer transport protein ExbD/TolR ALIDE_RS20495 PF01618 MotA/TolQ/ExbB proton channel family ALIDE_RS20500 PF01113 Dihydrodipicolinate reductase, N-terminus ALIDE_RS20500 PF05173 Dihydrodipicolinate reductase, C-terminus ALIDE_RS20505 PF04355 SmpA / OmlA family ALIDE_RS20510 PF01475 Ferric uptake regulator family ALIDE_RS20515 PF02603 HPr Serine kinase N terminus ALIDE_RS20515 PF07475 HPr Serine kinase C-terminal domain ALIDE_RS20520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ALIDE_RS20525 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ALIDE_RS20530 PF01259 SAICAR synthetase ALIDE_RS20535 PF00085 Thioredoxin ALIDE_RS20540 PF00731 AIR carboxylase ALIDE_RS20545 PF02222 ATP-grasp domain ALIDE_RS20545 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ALIDE_RS20550 PF03481 Putative GTP-binding controlling metal-binding ALIDE_RS20550 PF01300 Telomere recombination ALIDE_RS20615 PF03922 OmpW family ALIDE_RS20625 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ALIDE_RS20630 PF00814 Glycoprotease family ALIDE_RS20645 PF01544 CorA-like Mg2+ transporter protein ALIDE_RS20660 PF01048 Phosphorylase superfamily ALIDE_RS20665 PF00501 AMP-binding enzyme ALIDE_RS20665 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS20670 PF02233 NAD(P) transhydrogenase beta subunit ALIDE_RS20675 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ALIDE_RS20675 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ALIDE_RS20675 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ALIDE_RS20685 PF01116 Fructose-bisphosphate aldolase class-II ALIDE_RS20690 PF02887 Pyruvate kinase, alpha/beta domain ALIDE_RS20690 PF00224 Pyruvate kinase, barrel domain ALIDE_RS20695 PF00557 Metallopeptidase family M24 ALIDE_RS20695 PF05195 Aminopeptidase P, N-terminal domain ALIDE_RS20700 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS20705 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS20710 PF02515 CoA-transferase family III ALIDE_RS20725 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS20730 PF03466 LysR substrate binding domain ALIDE_RS20730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS20735 PF00483 Nucleotidyl transferase ALIDE_RS20740 PF02779 Transketolase, pyrimidine binding domain ALIDE_RS20740 PF00456 Transketolase, thiamine diphosphate binding domain ALIDE_RS20740 PF02780 Transketolase, C-terminal domain ALIDE_RS20745 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALIDE_RS20745 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALIDE_RS20755 PF07722 Peptidase C26 ALIDE_RS20760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS20760 PF03466 LysR substrate binding domain ALIDE_RS20765 PF04909 Amidohydrolase ALIDE_RS20795 PF00593 TonB dependent receptor ALIDE_RS20795 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS20805 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS20820 PF03466 LysR substrate binding domain ALIDE_RS20820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS20830 PF00106 short chain dehydrogenase ALIDE_RS20840 PF03942 DTW domain ALIDE_RS20860 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS20865 PF13607 Succinyl-CoA ligase like flavodoxin domain ALIDE_RS20865 PF13380 CoA binding domain ALIDE_RS20865 PF00583 Acetyltransferase (GNAT) family ALIDE_RS20870 PF02798 Glutathione S-transferase, N-terminal domain ALIDE_RS20885 PF01751 Toprim domain ALIDE_RS20885 PF01131 DNA topoisomerase ALIDE_RS20895 PF08279 HTH domain ALIDE_RS20895 PF03099 Biotin/lipoate A/B protein ligase family ALIDE_RS20895 PF02237 Biotin protein ligase C terminal domain ALIDE_RS20905 PF00107 Zinc-binding dehydrogenase ALIDE_RS20905 PF08240 Alcohol dehydrogenase GroES-like domain ALIDE_RS20915 PF13452 N-terminal half of MaoC dehydratase ALIDE_RS20925 PF00501 AMP-binding enzyme ALIDE_RS20925 PF16177 Acetyl-coenzyme A synthetase N-terminus ALIDE_RS20925 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS20930 PF12802 MarR family ALIDE_RS20950 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS20955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS20955 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS20955 PF08521 Two-component sensor kinase N-terminal ALIDE_RS20960 PF00072 Response regulator receiver domain ALIDE_RS20960 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS20965 PF00266 Aminotransferase class-V ALIDE_RS20970 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS20975 PF00005 ABC transporter ALIDE_RS20990 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase ALIDE_RS20995 PF00171 Aldehyde dehydrogenase family ALIDE_RS21005 PF01266 FAD dependent oxidoreductase ALIDE_RS21010 PF00842 Alanine racemase, C-terminal domain ALIDE_RS21010 PF01168 Alanine racemase, N-terminal domain ALIDE_RS21015 PF01266 FAD dependent oxidoreductase ALIDE_RS21020 PF01037 Lrp/AsnC ligand binding domain ALIDE_RS21030 PF00154 recA bacterial DNA recombination protein ALIDE_RS21035 PF02631 RecX family ALIDE_RS21045 PF07549 SecD/SecF GG Motif ALIDE_RS21045 PF02355 Protein export membrane protein ALIDE_RS21050 PF02355 Protein export membrane protein ALIDE_RS21050 PF13721 SecD export protein N-terminal TM region ALIDE_RS21050 PF07549 SecD/SecF GG Motif ALIDE_RS21055 PF02699 Preprotein translocase subunit ALIDE_RS21065 PF01037 Lrp/AsnC ligand binding domain ALIDE_RS21070 PF05977 Transmembrane secretion effector ALIDE_RS21075 PF06725 3D domain ALIDE_RS21075 PF03562 MltA specific insert domain ALIDE_RS21080 PF04972 BON domain ALIDE_RS21080 PF00691 OmpA family ALIDE_RS21085 PF00072 Response regulator receiver domain ALIDE_RS21085 PF00196 Bacterial regulatory proteins, luxR family ALIDE_RS21090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS21090 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS21090 PF00989 PAS fold ALIDE_RS21095 PF00795 Carbon-nitrogen hydrolase ALIDE_RS21105 PF03710 Glutamate-ammonia ligase adenylyltransferase ALIDE_RS21105 PF08335 GlnD PII-uridylyltransferase ALIDE_RS21110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALIDE_RS21115 PF00873 AcrB/AcrD/AcrF family ALIDE_RS21120 PF00043 Glutathione S-transferase, C-terminal domain ALIDE_RS21120 PF13417 Glutathione S-transferase, N-terminal domain ALIDE_RS21125 PF00206 Lyase ALIDE_RS21125 PF08328 Adenylosuccinate lyase C-terminal ALIDE_RS21130 PF07152 YaeQ protein ALIDE_RS21145 PF03741 Integral membrane protein TerC family ALIDE_RS21155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS21155 PF03466 LysR substrate binding domain ALIDE_RS21170 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV ALIDE_RS21175 PF01435 Peptidase family M48 ALIDE_RS21175 PF13181 Tetratricopeptide repeat ALIDE_RS21180 PF01967 MoaC family ALIDE_RS21190 PF12706 Beta-lactamase superfamily domain ALIDE_RS21190 PF00753 Metallo-beta-lactamase superfamily ALIDE_RS21195 PF16697 Inner membrane component of T3SS, cytoplasmic domain ALIDE_RS21205 PF03741 Integral membrane protein TerC family ALIDE_RS21210 PF00549 CoA-ligase ALIDE_RS21210 PF02629 CoA binding domain ALIDE_RS21215 PF08442 ATP-grasp domain ALIDE_RS21215 PF00549 CoA-ligase ALIDE_RS21220 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALIDE_RS21225 PF02481 DNA recombination-mediator protein A ALIDE_RS21225 PF17782 DprA winged helix domain ALIDE_RS21235 PF01327 Polypeptide deformylase ALIDE_RS21245 PF00551 Formyl transferase ALIDE_RS21245 PF02911 Formyl transferase, C-terminal domain ALIDE_RS21260 PF00162 Phosphoglycerate kinase ALIDE_RS21275 PF00892 EamA-like transporter family ALIDE_RS21280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ALIDE_RS21290 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS21300 PF02203 Tar ligand binding domain homologue ALIDE_RS21300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS21300 PF00672 HAMP domain ALIDE_RS21305 PF17760 UvrA interaction domain ALIDE_RS21305 PF17755 UvrA DNA-binding domain ALIDE_RS21310 PF07690 Major Facilitator Superfamily ALIDE_RS21315 PF00436 Single-strand binding protein family ALIDE_RS21325 PF02515 CoA-transferase family III ALIDE_RS21330 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS21340 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS21355 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS21355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS21355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS21360 PF02515 CoA-transferase family III ALIDE_RS21365 PF00378 Enoyl-CoA hydratase/isomerase ALIDE_RS21370 PF02652 L-lactate permease ALIDE_RS21380 PF03466 LysR substrate binding domain ALIDE_RS21380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS21385 PF04303 PrpF protein ALIDE_RS21390 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS21395 PF13609 Gram-negative porin ALIDE_RS21400 PF03466 LysR substrate binding domain ALIDE_RS21400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS21405 PF00890 FAD binding domain ALIDE_RS21405 PF04205 FMN-binding domain ALIDE_RS21415 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS21420 PF02954 Bacterial regulatory protein, Fis family ALIDE_RS21420 PF00072 Response regulator receiver domain ALIDE_RS21420 PF00158 Sigma-54 interaction domain ALIDE_RS21425 PF01039 Carboxyl transferase domain ALIDE_RS21430 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS21440 PF02785 Biotin carboxylase C-terminal domain ALIDE_RS21440 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALIDE_RS21440 PF00289 Biotin carboxylase, N-terminal domain ALIDE_RS21445 PF00364 Biotin-requiring enzyme ALIDE_RS21465 PF00593 TonB dependent receptor ALIDE_RS21465 PF07715 TonB-dependent Receptor Plug Domain ALIDE_RS21480 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS21485 PF02515 CoA-transferase family III ALIDE_RS21495 PF00501 AMP-binding enzyme ALIDE_RS21495 PF13193 AMP-binding enzyme C-terminal domain ALIDE_RS21500 PF00677 Lumazine binding domain ALIDE_RS21505 PF01810 LysE type translocator ALIDE_RS21510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS21515 PF00072 Response regulator receiver domain ALIDE_RS21515 PF00486 Transcriptional regulatory protein, C terminal ALIDE_RS21530 PF00175 Oxidoreductase NAD-binding domain ALIDE_RS21530 PF00970 Oxidoreductase FAD-binding domain ALIDE_RS21530 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS21535 PF01292 Prokaryotic cytochrome b561 ALIDE_RS21550 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS21550 PF00175 Oxidoreductase NAD-binding domain ALIDE_RS21550 PF00970 Oxidoreductase FAD-binding domain ALIDE_RS21555 PF02424 ApbE family ALIDE_RS21570 PF00689 Cation transporting ATPase, C-terminus ALIDE_RS21570 PF00690 Cation transporter/ATPase, N-terminus ALIDE_RS21580 PF03060 Nitronate monooxygenase ALIDE_RS21585 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS21590 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS21590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS21590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS21595 PF09339 IclR helix-turn-helix domain ALIDE_RS21595 PF01614 Bacterial transcriptional regulator ALIDE_RS21600 PF02515 CoA-transferase family III ALIDE_RS21610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALIDE_RS21610 PF02770 Acyl-CoA dehydrogenase, middle domain ALIDE_RS21610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALIDE_RS21615 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS21620 PF09339 IclR helix-turn-helix domain ALIDE_RS21625 PF02515 CoA-transferase family III ALIDE_RS21630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS21630 PF03466 LysR substrate binding domain ALIDE_RS21635 PF03401 Tripartite tricarboxylate transporter family receptor ALIDE_RS21685 PF03466 LysR substrate binding domain ALIDE_RS21685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS21690 PF00202 Aminotransferase class-III ALIDE_RS21695 PF00171 Aldehyde dehydrogenase family ALIDE_RS21700 PF05230 MASE2 domain ALIDE_RS21700 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS21705 PF07729 FCD domain ALIDE_RS21705 PF00392 Bacterial regulatory proteins, gntR family ALIDE_RS21715 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS21720 PF02653 Branched-chain amino acid transport system / permease component ALIDE_RS21720 PF11862 Domain of unknown function (DUF3382) ALIDE_RS21725 PF00005 ABC transporter ALIDE_RS21725 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALIDE_RS21730 PF00005 ABC transporter ALIDE_RS21735 PF07687 Peptidase dimerisation domain ALIDE_RS21735 PF01546 Peptidase family M20/M25/M40 ALIDE_RS21740 PF07171 MlrC C-terminus ALIDE_RS21740 PF07364 Metallopeptidase family M81 ALIDE_RS21745 PF03949 Malic enzyme, NAD binding domain ALIDE_RS21745 PF00390 Malic enzyme, N-terminal domain ALIDE_RS21745 PF01515 Phosphate acetyl/butaryl transferase ALIDE_RS21750 PF00545 ribonuclease ALIDE_RS21760 PF00398 Ribosomal RNA adenine dimethylase ALIDE_RS21765 PF00639 PPIC-type PPIASE domain ALIDE_RS21765 PF09312 SurA N-terminal domain ALIDE_RS21770 PF04453 LPS transport system D ALIDE_RS21775 PF01636 Phosphotransferase enzyme family ALIDE_RS21780 PF04452 RNA methyltransferase ALIDE_RS21795 PF06470 SMC proteins Flexible Hinge Domain ALIDE_RS21795 PF02463 RecF/RecN/SMC N terminal domain ALIDE_RS21805 PF00990 Diguanylate cyclase, GGDEF domain ALIDE_RS21820 PF08241 Methyltransferase domain ALIDE_RS21825 PF00561 alpha/beta hydrolase fold ALIDE_RS21830 PF01169 Uncharacterized protein family UPF0016 ALIDE_RS21835 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ALIDE_RS21840 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) ALIDE_RS21845 PF00106 short chain dehydrogenase ALIDE_RS21860 PF01380 SIS domain ALIDE_RS21860 PF00571 CBS domain ALIDE_RS21865 PF02254 TrkA-N domain ALIDE_RS21865 PF02080 TrkA-C domain ALIDE_RS21865 PF00999 Sodium/hydrogen exchanger family ALIDE_RS21870 PF00156 Phosphoribosyl transferase domain ALIDE_RS21885 PF12631 MnmE helical domain ALIDE_RS21885 PF01926 50S ribosome-binding GTPase ALIDE_RS21885 PF10396 GTP-binding protein TrmE N-terminus ALIDE_RS21890 PF00497 Bacterial extracellular solute-binding proteins, family 3 ALIDE_RS21895 PF01266 FAD dependent oxidoreductase ALIDE_RS21900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS21900 PF03466 LysR substrate binding domain ALIDE_RS21915 PF03576 Peptidase family S58 ALIDE_RS21920 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS21920 PF12911 N-terminal TM domain of oligopeptide transport permease C ALIDE_RS21925 PF00528 Binding-protein-dependent transport system inner membrane component ALIDE_RS21930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALIDE_RS21935 PF00005 ABC transporter ALIDE_RS21935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALIDE_RS21940 PF01112 Asparaginase ALIDE_RS21960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALIDE_RS21965 PF02096 60Kd inner membrane protein ALIDE_RS21965 PF14849 YidC periplasmic domain ALIDE_RS21970 PF01809 Putative membrane protein insertion efficiency factor ALIDE_RS21975 PF00825 Ribonuclease P ALIDE_RS21980 PF00468 Ribosomal protein L34 ALIDE_RS22015 PF01751 Toprim domain ALIDE_RS22015 PF00204 DNA gyrase B ALIDE_RS22015 PF18053 DNA gyrase B subunit insert domain ALIDE_RS22015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS22015 PF00986 DNA gyrase B subunit, carboxyl terminus ALIDE_RS22030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALIDE_RS22030 PF03466 LysR substrate binding domain ALIDE_RS22170 PF02203 Tar ligand binding domain homologue ALIDE_RS22170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALIDE_RS22170 PF00672 HAMP domain ALIDE_RS22270 PF01134 Glucose inhibited division protein A ALIDE_RS22270 PF13932 GidA associated domain ALIDE_RS22345 PF02913 FAD linked oxidases, C-terminal domain ALIDE_RS22345 PF01565 FAD binding domain ALIDE_RS22600 PF01039 Carboxyl transferase domain ALIDE_RS22750 PF09278 MerR, DNA binding ALIDE_RS22750 PF00376 MerR family regulatory protein ALIDE_RS22895 PF00924 Mechanosensitive ion channel ALIDE_RS22895 PF05552 Conserved TM helix ALIDE_RS22930 PF04233 Phage Mu protein F like protein ALIDE_RS23030 PF00589 Phage integrase family ALIDE_RS23030 PF13495 Phage integrase, N-terminal SAM-like domain ALIDE_RS23055 PF06791 Prophage tail length tape measure protein ALIDE_RS23125 PF02086 D12 class N6 adenine-specific DNA methyltransferase ALIDE_RS23140 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS23140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS23140 PF00989 PAS fold ALIDE_RS23150 PF02515 CoA-transferase family III ALIDE_RS23155 PF02515 CoA-transferase family III ALIDE_RS23160 PF00111 2Fe-2S iron-sulfur cluster binding domain ALIDE_RS23160 PF00970 Oxidoreductase FAD-binding domain ALIDE_RS23160 PF00175 Oxidoreductase NAD-binding domain ALIDE_RS23165 PF08448 PAS fold ALIDE_RS23165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALIDE_RS23165 PF00512 His Kinase A (phospho-acceptor) domain ALIDE_RS23165 PF00072 Response regulator receiver domain ALIDE_RS23165 PF13426 PAS domain