locus-tag	class	description
ALIDE_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
ALIDE_RS00025	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS00030	COG1024	Enoyl-CoA hydratase
ALIDE_RS00035	COG0583	DNA-binding transcription factor activity
ALIDE_RS00040	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS00050	COG4770	biotin carboxylase activity
ALIDE_RS00055	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00060	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ALIDE_RS00065	COG1254	Belongs to the acylphosphatase family
ALIDE_RS00080	COG1199	ATP-dependent helicase activity
ALIDE_RS00090	COG0791	NLP P60 protein
ALIDE_RS00095	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ALIDE_RS00115	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00120	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00135	COG1024	Enoyl-CoA hydratase
ALIDE_RS00155	COG2974	May be involved in recombination
ALIDE_RS00160	COG0700	Nucleoside recognition
ALIDE_RS00175	COG0789	Transcriptional regulator
ALIDE_RS00210	COG0745	RESPONSE REGULATOR receiver
ALIDE_RS00220	COG1902	pentaerythritol trinitrate reductase activity
ALIDE_RS00240	COG0445	tRNA wobble uridine modification
ALIDE_RS00250	COG0357	Ribosomal RNA small subunit methyltransferase G
ALIDE_RS00260	COG1192	Involved in chromosome partitioning
ALIDE_RS00270	COG1475	DNA binding
ALIDE_RS00295	COG0668	transmembrane transport
ALIDE_RS00300	COG0277	FAD linked oxidase domain protein
ALIDE_RS00315	COG2369	cell adhesion
ALIDE_RS00390	COG2096	Adenosyltransferase
ALIDE_RS00395	COG2050	protein possibly involved in aromatic compounds catabolism
ALIDE_RS00420	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS00435	COG2233	PERMEase
ALIDE_RS00450	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ALIDE_RS00455	COG0583	DNA-binding transcription factor activity
ALIDE_RS00465	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00470	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00480	COG1183	phosphatidylcholine synthase activity
ALIDE_RS00485	COG4774	siderophore transport
ALIDE_RS00500	COG0850	regulation of cytokinetic process
ALIDE_RS00510	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
ALIDE_RS00515	COG0583	DNA-binding transcription factor activity
ALIDE_RS00520	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS00525	COG4948	Mandelate Racemase Muconate Lactonizing
ALIDE_RS00530	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
ALIDE_RS00535	COG2267	carboxylic ester hydrolase activity
ALIDE_RS00565	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
ALIDE_RS00570	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ALIDE_RS00575	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00590	COG0583	DNA-binding transcription factor activity
ALIDE_RS00605	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS00610	COG0514	ATP-dependent DNA helicase (RecQ)
ALIDE_RS00640	COG3256	nitric oxide reductase
ALIDE_RS00645	COG3604	Transcriptional regulator
ALIDE_RS00655	COG1760	l-serine dehydratase
ALIDE_RS00665	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS00700	COG0183	Belongs to the thiolase family
ALIDE_RS00715	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS00725	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS00740	COG0183	Belongs to the thiolase family
ALIDE_RS00745	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00755	COG2030	dehydratase
ALIDE_RS00760	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS00810	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00815	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
ALIDE_RS00820	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS00825	COG2030	dehydratase
ALIDE_RS00830	COG1024	Enoyl-CoA hydratase
ALIDE_RS00835	COG0427	acetyl-CoA hydrolase
ALIDE_RS00840	COG0183	Belongs to the thiolase family
ALIDE_RS00865	COG0583	DNA-binding transcription factor activity
ALIDE_RS00875	COG1473	amidohydrolase
ALIDE_RS00885	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS00900	COG1473	amidohydrolase
ALIDE_RS00915	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00940	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00945	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ALIDE_RS00950	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS00955	COG1024	Enoyl-CoA hydratase
ALIDE_RS00980	COG0583	DNA-binding transcription factor activity
ALIDE_RS00985	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS00990	COG0583	DNA-binding transcription factor activity
ALIDE_RS01005	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ALIDE_RS01020	COG3204	pilus organization
ALIDE_RS01025	COG0646	methionine synthase
ALIDE_RS01025	COG1410	methionine synthase
ALIDE_RS01050	COG2948	multi-organism process
ALIDE_RS01065	COG3846	protein secretion by the type IV secretion system
ALIDE_RS01075	COG3451	type IV secretory pathway VirB4
ALIDE_RS01085	COG3838	Conjugal transfer protein Trbc
ALIDE_RS01090	COG4962	Type ii secretion system protein e
ALIDE_RS01110	COG0583	DNA-binding transcription factor activity
ALIDE_RS01145	COG0642	Histidine kinase
ALIDE_RS01160	COG0789	Transcriptional regulator
ALIDE_RS01185	COG1192	Involved in chromosome partitioning
ALIDE_RS01210	COG1396	sequence-specific DNA binding
ALIDE_RS01215	COG5489	Protein of unknown function (DUF736)
ALIDE_RS01260	COG3657	addiction module killer protein
ALIDE_RS01270	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
ALIDE_RS01290	COG0683	leucine binding
ALIDE_RS01335	COG0347	Belongs to the P(II) protein family
ALIDE_RS01340	COG0004	ammonium transporteR
ALIDE_RS01350	COG2084	Dehydrogenase
ALIDE_RS01380	COG2267	carboxylic ester hydrolase activity
ALIDE_RS01390	COG3180	Ammonia monooxygenase
ALIDE_RS01395	COG2079	MmgE PrpD family protein
ALIDE_RS01415	COG0277	FAD linked oxidase domain protein
ALIDE_RS01425	COG0247	lactate metabolic process
ALIDE_RS01440	COG0477	Major facilitator Superfamily
ALIDE_RS01445	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
ALIDE_RS01450	COG1858	cytochrome C peroxidase
ALIDE_RS01455	COG0625	glutathione transferase activity
ALIDE_RS01470	COG0154	amidase activity
ALIDE_RS01500	COG1442	glycosyl transferase family 8
ALIDE_RS01500	COG1216	Glycosyl transferase, family 2
ALIDE_RS01520	COG0477	Major facilitator Superfamily
ALIDE_RS01525	COG2258	MOSC domain
ALIDE_RS01545	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS01560	COG2205	protein histidine kinase activity
ALIDE_RS01565	COG0745	RESPONSE REGULATOR receiver
ALIDE_RS01585	COG0501	Belongs to the peptidase M48B family
ALIDE_RS01680	COG4569	acetaldehyde dehydrogenase (acetylating) activity
ALIDE_RS01705	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ALIDE_RS01710	COG1414	Transcriptional regulator
ALIDE_RS01730	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ALIDE_RS01735	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ALIDE_RS01755	COG3386	PFAM SMP-30 Gluconolaconase
ALIDE_RS01765	COG2084	Dehydrogenase
ALIDE_RS01770	COG1012	belongs to the aldehyde dehydrogenase family
ALIDE_RS01775	COG1414	Transcriptional regulator
ALIDE_RS01825	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS01830	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS01840	COG0708	Exodeoxyribonuclease III
ALIDE_RS01845	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
ALIDE_RS01855	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ALIDE_RS01860	COG0154	amidase activity
ALIDE_RS01865	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
ALIDE_RS01870	COG1077	Cell shape determining protein MreB Mrl
ALIDE_RS01880	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
ALIDE_RS01885	COG0768	penicillin binding
ALIDE_RS01895	COG0730	response to heat
ALIDE_RS01905	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ALIDE_RS01910	COG1127	ABC transporter
ALIDE_RS01915	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ALIDE_RS01915	COG3008	intermembrane lipid transfer
ALIDE_RS01925	COG0583	DNA-binding transcription factor activity
ALIDE_RS01930	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
ALIDE_RS01940	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ALIDE_RS01945	COG2095	MarC family integral membrane protein
ALIDE_RS01950	COG0412	Dienelactone hydrolase
ALIDE_RS01975	COG0598	Magnesium transport protein CorA
ALIDE_RS01990	COG1981	membrane
ALIDE_RS02005	COG2945	thiolester hydrolase activity
ALIDE_RS02010	COG1686	Belongs to the peptidase S11 family
ALIDE_RS02015	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
ALIDE_RS02020	COG0049	tRNA binding
ALIDE_RS02025	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
ALIDE_RS02030	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
ALIDE_RS02035	COG0051	transcription antitermination factor activity, RNA binding
ALIDE_RS02040	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
ALIDE_RS02045	COG0088	Forms part of the polypeptide exit tunnel
ALIDE_RS02050	COG0089	rRNA binding
ALIDE_RS02055	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
ALIDE_RS02060	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
ALIDE_RS02065	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
ALIDE_RS02070	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
ALIDE_RS02075	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
ALIDE_RS02080	COG0255	Belongs to the universal ribosomal protein uL29 family
ALIDE_RS02085	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
ALIDE_RS02090	COG0678	peroxiredoxin activity
ALIDE_RS02090	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
ALIDE_RS02095	COG0456	acetyltransferase
ALIDE_RS02105	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ALIDE_RS02120	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
ALIDE_RS02125	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
ALIDE_RS02130	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
ALIDE_RS02135	COG0321	lipoyl(octanoyl) transferase activity
ALIDE_RS02140	COG2921	Belongs to the UPF0250 family
ALIDE_RS02150	COG0356	it plays a direct role in the translocation of protons across the membrane
ALIDE_RS02160	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
ALIDE_RS02165	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
ALIDE_RS02170	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
ALIDE_RS02175	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
ALIDE_RS02180	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
ALIDE_RS02185	COG0355	proton-transporting ATP synthase activity, rotational mechanism
ALIDE_RS02230	COG3245	cytochrome
ALIDE_RS02240	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ALIDE_RS02245	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALIDE_RS02275	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
ALIDE_RS02285	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
ALIDE_RS02295	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
ALIDE_RS02300	COG0081	regulation of translation
ALIDE_RS02305	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
ALIDE_RS02310	COG0222	ribosome binding
ALIDE_RS02315	COG0085	RNA polymerase activity
ALIDE_RS02320	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
ALIDE_RS02330	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ALIDE_RS02330	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ALIDE_RS02340	COG5000	phosphorelay sensor kinase activity
ALIDE_RS02345	COG2204	response regulator
ALIDE_RS02365	COG1396	sequence-specific DNA binding
ALIDE_RS02370	COG2856	Zn peptidase
ALIDE_RS02410	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ALIDE_RS02415	COG0463	Glycosyl transferase, family 2
ALIDE_RS02430	COG0792	nuclease activity
ALIDE_RS02435	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
ALIDE_RS02445	COG2084	Dehydrogenase
ALIDE_RS02455	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ALIDE_RS02465	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
ALIDE_RS02480	COG2733	membrane
ALIDE_RS02485	COG0277	FAD linked oxidase domain protein
ALIDE_RS02490	COG0583	DNA-binding transcription factor activity
ALIDE_RS02500	COG5001	Diguanylate cyclase
ALIDE_RS02515	COG4585	Histidine kinase
ALIDE_RS02520	COG2197	response regulator
ALIDE_RS02530	COG2223	nitrite transmembrane transporter activity
ALIDE_RS02535	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
ALIDE_RS02540	COG1140	nitrate reductase beta subunit
ALIDE_RS02545	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
ALIDE_RS02550	COG2181	nitrate reductase activity
ALIDE_RS02560	COG0288	reversible hydration of carbon dioxide
ALIDE_RS02575	COG3945	hemerythrin HHE cation binding domain
ALIDE_RS02600	COG0243	molybdopterin cofactor binding
ALIDE_RS02610	COG2301	Belongs to the HpcH HpaI aldolase family
ALIDE_RS02615	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS02620	COG2030	dehydratase
ALIDE_RS02630	COG2030	dehydratase
ALIDE_RS02650	COG1473	amidohydrolase
ALIDE_RS02665	COG2818	Glycosylase
ALIDE_RS02670	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
ALIDE_RS02710	COG0559	Belongs to the binding-protein-dependent transport system permease family
ALIDE_RS02720	COG1022	Amp-dependent synthetase and ligase
ALIDE_RS02725	COG3267	Type II secretory pathway component ExeA
ALIDE_RS02725	COG3409	Peptidoglycan-binding domain 1 protein
ALIDE_RS02735	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ALIDE_RS02740	COG1187	pseudouridine synthase activity
ALIDE_RS02745	COG0326	Molecular chaperone. Has ATPase activity
ALIDE_RS02755	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS02760	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ALIDE_RS02775	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS02790	COG1250	3-hydroxyacyl-CoA dehydrogenase
ALIDE_RS02810	COG1131	(ABC) transporter
ALIDE_RS02815	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
ALIDE_RS02820	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
ALIDE_RS02825	COG5001	Diguanylate cyclase
ALIDE_RS02825	COG3300	MHYT domain
ALIDE_RS02830	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
ALIDE_RS02835	COG1490	D-aminoacyl-tRNA deacylase activity
ALIDE_RS02840	COG0730	response to heat
ALIDE_RS02855	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS02860	COG0604	alcohol dehydrogenase
ALIDE_RS02865	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS02870	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
ALIDE_RS02875	COG1702	phosphate starvation-inducible protein PhoH
ALIDE_RS02880	COG0632	four-way junction helicase activity
ALIDE_RS02895	COG0443	Heat shock 70 kDa protein
ALIDE_RS02905	COG2255	four-way junction helicase activity
ALIDE_RS02910	COG1285	pathogenesis
ALIDE_RS02925	COG3616	Alanine racemase, N-terminal domain
ALIDE_RS02940	COG0037	tRNA processing
ALIDE_RS02975	COG1940	carbohydrate kinase activity
ALIDE_RS02980	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
ALIDE_RS02990	COG1877	trehalose-phosphatase activity
ALIDE_RS03000	COG0617	tRNA 3'-terminal CCA addition
ALIDE_RS03020	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS03035	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
ALIDE_RS03040	COG0739	heme binding
ALIDE_RS03040	COG0741	lytic transglycosylase activity
ALIDE_RS03040	COG1196	nuclear chromosome segregation
ALIDE_RS03055	COG3128	pkhd-type hydroxylase
ALIDE_RS03065	COG4774	siderophore transport
ALIDE_RS03075	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS03090	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ALIDE_RS03095	COG0815	Transfers the fatty acyl group on membrane lipoproteins
ALIDE_RS03110	COG1522	sequence-specific DNA binding
ALIDE_RS03120	COG3186	Phenylalanine-4-hydroxylase
ALIDE_RS03130	COG0022	dehydrogenase e1 component
ALIDE_RS03145	COG0752	glycyl-tRNA synthetase alpha subunit
ALIDE_RS03150	COG0751	glycine-tRNA ligase activity
ALIDE_RS03155	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
ALIDE_RS03160	COG0204	Acyl-transferase
ALIDE_RS03175	COG1652	LysM domain
ALIDE_RS03180	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
ALIDE_RS03225	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ALIDE_RS03240	COG4969	Belongs to the N-Me-Phe pilin family
ALIDE_RS03255	COG3156	type II secretion system protein K
ALIDE_RS03275	COG1450	Type ii and iii secretion system protein
ALIDE_RS03330	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
ALIDE_RS03335	COG1196	nuclear chromosome segregation
ALIDE_RS03335	COG0741	lytic transglycosylase activity
ALIDE_RS03335	COG0739	heme binding
ALIDE_RS03345	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ALIDE_RS03350	COG1309	transcriptional regulator
ALIDE_RS03360	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS03370	COG1250	3-hydroxyacyl-CoA dehydrogenase
ALIDE_RS03370	COG1024	Enoyl-CoA hydratase
ALIDE_RS03375	COG0183	Belongs to the thiolase family
ALIDE_RS03385	COG1024	Enoyl-CoA hydratase
ALIDE_RS03400	COG5265	(ABC) transporter
ALIDE_RS03405	COG1021	2,3-dihydroxybenzoate-AMP ligase
ALIDE_RS03425	COG0583	DNA-binding transcription factor activity
ALIDE_RS03435	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
ALIDE_RS03440	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
ALIDE_RS03440	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
ALIDE_RS03445	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
ALIDE_RS03450	COG0583	DNA-binding transcription factor activity
ALIDE_RS03455	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALIDE_RS03460	COG0765	amino acid transport
ALIDE_RS03465	COG0765	amino acid transport
ALIDE_RS03470	COG1126	abc transporter atp-binding protein
ALIDE_RS03475	COG2423	ornithine cyclodeaminase activity
ALIDE_RS03485	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
ALIDE_RS03495	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
ALIDE_RS03505	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
ALIDE_RS03510	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
ALIDE_RS03515	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
ALIDE_RS03525	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
ALIDE_RS03530	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
ALIDE_RS03535	COG0316	Belongs to the HesB IscA family
ALIDE_RS03540	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
ALIDE_RS03545	COG0739	heme binding
ALIDE_RS03550	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
ALIDE_RS03555	COG0583	DNA-binding transcription factor activity
ALIDE_RS03560	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
ALIDE_RS03565	COG2205	protein histidine kinase activity
ALIDE_RS03580	COG1522	sequence-specific DNA binding
ALIDE_RS03595	COG1570	exodeoxyribonuclease VII activity
ALIDE_RS03620	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ALIDE_RS03625	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
ALIDE_RS03630	COG0745	RESPONSE REGULATOR receiver
ALIDE_RS03635	COG5002	protein histidine kinase activity
ALIDE_RS03670	COG0489	protein tyrosine kinase activity
ALIDE_RS03675	COG3409	Peptidoglycan-binding domain 1 protein
ALIDE_RS03675	COG3267	Type II secretory pathway component ExeA
ALIDE_RS03700	COG0367	asparagine synthase
ALIDE_RS03705	COG0438	transferase activity, transferring glycosyl groups
ALIDE_RS03710	COG0297	glycogen (starch) synthase activity
ALIDE_RS03720	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ALIDE_RS03725	COG0438	transferase activity, transferring glycosyl groups
ALIDE_RS03750	COG1216	Glycosyl transferase, family 2
ALIDE_RS03750	COG0463	Glycosyl transferase, family 2
ALIDE_RS03760	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
ALIDE_RS03805	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS03815	COG5002	protein histidine kinase activity
ALIDE_RS03815	COG3850	Histidine kinase
ALIDE_RS03820	COG2204	response regulator
ALIDE_RS03835	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ALIDE_RS03845	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS03870	COG3045	CreA protein
ALIDE_RS03875	COG1181	Belongs to the D-alanine--D-alanine ligase family
ALIDE_RS03875	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ALIDE_RS03880	COG1181	Belongs to the D-alanine--D-alanine ligase family
ALIDE_RS03880	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ALIDE_RS03885	COG1132	(ABC) transporter
ALIDE_RS03915	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
ALIDE_RS03985	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
ALIDE_RS03990	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ALIDE_RS03995	COG1765	OsmC-like protein
ALIDE_RS04000	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
ALIDE_RS04020	COG1473	amidohydrolase
ALIDE_RS04025	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ALIDE_RS04030	COG0444	Belongs to the ABC transporter superfamily
ALIDE_RS04035	COG4608	Belongs to the ABC transporter superfamily
ALIDE_RS04040	COG1881	PFAM PEBP family protein
ALIDE_RS04045	COG0837	glucose binding
ALIDE_RS04045	COG1737	Transcriptional regulator
ALIDE_RS04050	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
ALIDE_RS04055	COG0166	Belongs to the GPI family
ALIDE_RS04060	COG0459	protein refolding
ALIDE_RS04065	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
ALIDE_RS04070	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
ALIDE_RS04075	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
ALIDE_RS04085	COG1560	Kdo2-lipid A biosynthetic process
ALIDE_RS04090	COG0583	DNA-binding transcription factor activity
ALIDE_RS04100	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS04105	COG0473	3-isopropylmalate dehydrogenase activity
ALIDE_RS04115	COG0218	Necessary for normal cell division and for the maintenance of normal septation
ALIDE_RS04125	COG1333	cytochrome c biogenesis protein
ALIDE_RS04130	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ALIDE_RS04135	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
ALIDE_RS04140	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
ALIDE_RS04155	COG1965	Belongs to the frataxin family
ALIDE_RS04200	COG0232	Belongs to the dGTPase family. Type 2 subfamily
ALIDE_RS04235	COG0070	glutamate synthase
ALIDE_RS04235	COG0069	glutamate synthase activity
ALIDE_RS04235	COG0067	glutamate synthase
ALIDE_RS04245	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALIDE_RS04250	COG0765	amino acid transport
ALIDE_RS04255	COG1126	abc transporter atp-binding protein
ALIDE_RS04265	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
ALIDE_RS04270	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
ALIDE_RS04275	COG1127	ABC transporter
ALIDE_RS04280	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
ALIDE_RS04285	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
ALIDE_RS04305	COG2199	diguanylate cyclase activity
ALIDE_RS04310	COG1131	(ABC) transporter
ALIDE_RS04315	COG0842	Transport permease protein
ALIDE_RS04320	COG5007	Belongs to the BolA IbaG family
ALIDE_RS04325	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
ALIDE_RS04330	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
ALIDE_RS04350	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ALIDE_RS04355	COG0131	Imidazoleglycerol-phosphate dehydratase
ALIDE_RS04365	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
ALIDE_RS04380	COG0438	transferase activity, transferring glycosyl groups
ALIDE_RS04410	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
ALIDE_RS04415	COG0107	imidazoleglycerol-phosphate synthase activity
ALIDE_RS04420	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
ALIDE_RS04425	COG0140	phosphoribosyl-ATP diphosphatase activity
ALIDE_RS04440	COG0537	adenosine 5'-monophosphoramidase activity
ALIDE_RS04445	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ALIDE_RS04450	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
ALIDE_RS04455	COG0805	protein transport
ALIDE_RS04460	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ALIDE_RS04465	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
ALIDE_RS04470	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
ALIDE_RS04475	COG1970	mechanosensitive ion channel activity
ALIDE_RS04480	COG0723	plastoquinol--plastocyanin reductase activity
ALIDE_RS04485	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
ALIDE_RS04490	COG2857	Cytochrome c1
ALIDE_RS04495	COG0625	glutathione transferase activity
ALIDE_RS04500	COG2969	positive regulation of protein catabolic process
ALIDE_RS04515	COG0653	protein targeting
ALIDE_RS04520	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
ALIDE_RS04530	COG0494	nUDIX hydrolase
ALIDE_RS04535	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
ALIDE_RS04540	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
ALIDE_RS04545	COG0237	dephospho-CoA kinase activity
ALIDE_RS04595	COG0142	geranyltranstransferase activity
ALIDE_RS04600	COG0261	This protein binds to 23S rRNA in the presence of protein L20
ALIDE_RS04605	COG0211	Belongs to the bacterial ribosomal protein bL27 family
ALIDE_RS04610	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
ALIDE_RS04615	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
ALIDE_RS04620	COG0494	nUDIX hydrolase
ALIDE_RS04625	COG0442	prolyl-tRNA aminoacylation
ALIDE_RS04635	COG1253	flavin adenine dinucleotide binding
ALIDE_RS04640	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
ALIDE_RS04645	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
ALIDE_RS04650	COG2890	protein-(glutamine-N5) methyltransferase activity
ALIDE_RS04655	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
ALIDE_RS04660	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
ALIDE_RS04685	COG3264	Mechanosensitive ion channel
ALIDE_RS04685	COG1511	domain protein
ALIDE_RS04690	COG0584	glycerophosphoryl diester phosphodiesterase
ALIDE_RS04695	COG3842	ATPase activity
ALIDE_RS04700	COG0395	ABC-type sugar transport system, permease component
ALIDE_RS04705	COG1175	transmembrane transport
ALIDE_RS04710	COG1653	transport
ALIDE_RS04715	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ALIDE_RS04735	COG2226	methyltransferase
ALIDE_RS04750	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
ALIDE_RS04770	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
ALIDE_RS04785	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ALIDE_RS04790	COG0302	gtp cyclohydrolase
ALIDE_RS04805	COG4191	Histidine kinase
ALIDE_RS04810	COG4566	intracellular signal transduction
ALIDE_RS04815	COG3258	Cytochrome c
ALIDE_RS04830	COG1280	lysine exporter protein (LysE YggA)
ALIDE_RS04835	COG0154	amidase activity
ALIDE_RS04845	COG4608	Belongs to the ABC transporter superfamily
ALIDE_RS04850	COG0444	Belongs to the ABC transporter superfamily
ALIDE_RS04855	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ALIDE_RS04865	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
ALIDE_RS04870	COG0193	aminoacyl-tRNA hydrolase activity
ALIDE_RS04875	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
ALIDE_RS04880	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
ALIDE_RS04890	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
ALIDE_RS04905	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
ALIDE_RS04915	COG1194	a g-specific adenine glycosylase
ALIDE_RS04920	COG1660	Displays ATPase and GTPase activities
ALIDE_RS04925	COG0497	DNA recombination
ALIDE_RS04930	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
ALIDE_RS04935	COG1420	regulation of RNA biosynthetic process
ALIDE_RS04940	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ALIDE_RS04945	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ALIDE_RS04955	COG0436	Aminotransferase
ALIDE_RS04960	COG0765	amino acid transport
ALIDE_RS04965	COG0765	amino acid transport
ALIDE_RS04975	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALIDE_RS04980	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALIDE_RS04995	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
ALIDE_RS05000	COG1984	allophanate hydrolase subunit 2
ALIDE_RS05005	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
ALIDE_RS05015	COG0439	Biotin carboxylase
ALIDE_RS05030	COG0635	Involved in the biosynthesis of porphyrin-containing compound
ALIDE_RS05035	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
ALIDE_RS05055	COG1561	YicC-like family, N-terminal region
ALIDE_RS05125	COG1222	aaa ATPase
ALIDE_RS05150	COG0194	GDP metabolic process
ALIDE_RS05155	COG1758	RNA polymerase activity
ALIDE_RS05160	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ALIDE_RS05180	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
ALIDE_RS05185	COG1185	polyribonucleotide nucleotidyltransferase activity
ALIDE_RS05190	COG3321	synthase
ALIDE_RS05190	COG0604	alcohol dehydrogenase
ALIDE_RS05190	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS05195	COG0149	triose-phosphate isomerase activity
ALIDE_RS05210	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ALIDE_RS05215	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ALIDE_RS05220	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ALIDE_RS05225	COG0649	NAD binding
ALIDE_RS05240	COG1034	ATP synthesis coupled electron transport
ALIDE_RS05245	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
ALIDE_RS05250	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
ALIDE_RS05260	COG0713	ATP synthesis coupled electron transport
ALIDE_RS05275	COG1007	ATP synthesis coupled electron transport
ALIDE_RS05295	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
ALIDE_RS05300	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
ALIDE_RS05310	COG0586	Pfam SNARE associated Golgi protein
ALIDE_RS05315	COG0402	S-adenosylhomocysteine deaminase activity
ALIDE_RS05320	COG2252	PERMEase
ALIDE_RS05330	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ALIDE_RS05335	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
ALIDE_RS05345	COG0860	N-Acetylmuramoyl-L-alanine amidase
ALIDE_RS05350	COG0802	atpase or kinase
ALIDE_RS05355	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
ALIDE_RS05370	COG4974	Belongs to the 'phage' integrase family
ALIDE_RS05385	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
ALIDE_RS05390	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
ALIDE_RS05395	COG2833	Protein of unknown function (DUF455)
ALIDE_RS05405	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
ALIDE_RS05410	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALIDE_RS05430	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
ALIDE_RS05435	COG0148	phosphopyruvate hydratase activity
ALIDE_RS05445	COG2877	3-deoxy-8-phosphooctulonate synthase activity
ALIDE_RS05450	COG0504	CTP synthase activity
ALIDE_RS05455	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
ALIDE_RS05465	COG0756	dUTP diphosphatase activity
ALIDE_RS05470	COG1047	Peptidyl-prolyl cis-trans
ALIDE_RS05475	COG2850	peptidyl-arginine hydroxylation
ALIDE_RS05490	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
ALIDE_RS05495	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ALIDE_RS05550	COG1722	exodeoxyribonuclease VII activity
ALIDE_RS05560	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
ALIDE_RS05565	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
ALIDE_RS05570	COG1201	RNA secondary structure unwinding
ALIDE_RS05575	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
ALIDE_RS05585	COG0483	inositol monophosphate 1-phosphatase activity
ALIDE_RS05595	COG1045	serine acetyltransferase
ALIDE_RS05605	COG1063	alcohol dehydrogenase
ALIDE_RS05610	COG0521	Mo-molybdopterin cofactor biosynthetic process
ALIDE_RS05615	COG3028	Belongs to the UPF0307 family
ALIDE_RS05620	COG0312	modulator of DNA gyrase
ALIDE_RS05625	COG3179	chitinase
ALIDE_RS05655	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ALIDE_RS05690	COG0114	fumarate hydratase activity
ALIDE_RS05695	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ALIDE_RS05700	COG2113	Glycine betaine
ALIDE_RS05705	COG4176	ABC-type proline glycine betaine transport system permease component
ALIDE_RS05710	COG4175	Glycine betaine
ALIDE_RS05715	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ALIDE_RS05720	COG2304	oxidoreductase activity
ALIDE_RS05730	COG0714	Associated with various cellular activities
ALIDE_RS05735	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ALIDE_RS05745	COG0640	Transcriptional regulator
ALIDE_RS05755	COG0084	hydrolase, TatD family'
ALIDE_RS05765	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
ALIDE_RS05770	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
ALIDE_RS05785	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS05800	COG0697	spore germination
ALIDE_RS05815	COG0583	DNA-binding transcription factor activity
ALIDE_RS05830	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
ALIDE_RS05835	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ALIDE_RS05845	COG4149	molybdate abc transporter
ALIDE_RS05850	COG1840	ABC-type Fe3 transport system, periplasmic component
ALIDE_RS05855	COG1609	Transcriptional regulator
ALIDE_RS05860	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
ALIDE_RS05865	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
ALIDE_RS05870	COG0196	riboflavin kinase activity
ALIDE_RS05880	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS05885	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS05890	COG3132	Protein of unknown function, DUF480
ALIDE_RS05895	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
ALIDE_RS05900	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
ALIDE_RS05900	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ALIDE_RS05905	COG0267	Belongs to the bacterial ribosomal protein bL33 family
ALIDE_RS05910	COG0227	Belongs to the bacterial ribosomal protein bL28 family
ALIDE_RS05915	COG0492	ferredoxin-NADP+ reductase activity
ALIDE_RS05920	COG1674	ftsk spoiiie
ALIDE_RS05925	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
ALIDE_RS05930	COG1575	Belongs to the MenA family. Type 1 subfamily
ALIDE_RS05935	COG1573	uracil-dna glycosylase
ALIDE_RS05940	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
ALIDE_RS05945	COG0559	Belongs to the binding-protein-dependent transport system permease family
ALIDE_RS05975	COG1392	Phosphate transport regulator
ALIDE_RS05980	COG0306	phosphate transporter
ALIDE_RS05995	COG0228	four-way junction DNA binding
ALIDE_RS06000	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
ALIDE_RS06005	COG0336	Belongs to the RNA methyltransferase TrmD family
ALIDE_RS06010	COG0335	large ribosomal subunit rRNA binding
ALIDE_RS06015	COG0494	nUDIX hydrolase
ALIDE_RS06020	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ALIDE_RS06025	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
ALIDE_RS06030	COG0659	secondary active sulfate transmembrane transporter activity
ALIDE_RS06035	COG1162	GTPase activity
ALIDE_RS06040	COG2154	pterin-4-alpha-carbinolamine dehydratase
ALIDE_RS06045	COG0501	Belongs to the peptidase M48B family
ALIDE_RS06050	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
ALIDE_RS06060	COG0513	Belongs to the DEAD box helicase family
ALIDE_RS06065	COG5001	Diguanylate cyclase
ALIDE_RS06065	COG3447	MASE1 domain protein
ALIDE_RS06065	COG5002	protein histidine kinase activity
ALIDE_RS06070	COG2814	Major facilitator Superfamily
ALIDE_RS06105	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
ALIDE_RS06115	COG4771	TonB-dependent receptor
ALIDE_RS06235	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ALIDE_RS06395	COG4695	Portal protein
ALIDE_RS06405	COG0516	GMP reductase activity
ALIDE_RS06410	COG0210	DNA helicase
ALIDE_RS06420	COG3706	GGDEF domain
ALIDE_RS06420	COG5001	Diguanylate cyclase
ALIDE_RS06420	COG2203	Gaf domain
ALIDE_RS06420	COG4251	negative regulation of phosphorylation
ALIDE_RS06430	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
ALIDE_RS06455	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS06470	COG0583	DNA-binding transcription factor activity
ALIDE_RS06480	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS06485	COG1024	Enoyl-CoA hydratase
ALIDE_RS06490	COG0412	Dienelactone hydrolase
ALIDE_RS06505	COG0560	Phosphoserine phosphatase
ALIDE_RS06520	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
ALIDE_RS06525	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
ALIDE_RS06525	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
ALIDE_RS06530	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
ALIDE_RS06550	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS06560	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
ALIDE_RS06575	COG0724	RNA recognition motif
ALIDE_RS06580	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
ALIDE_RS06585	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ALIDE_RS06605	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ALIDE_RS06610	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS06620	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
ALIDE_RS06640	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS06645	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ALIDE_RS06660	COG1122	ATPase activity
ALIDE_RS06740	COG0071	Belongs to the small heat shock protein (HSP20) family
ALIDE_RS06745	COG1136	(ABC) transporter
ALIDE_RS06750	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
ALIDE_RS06760	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ALIDE_RS06765	COG0537	adenosine 5'-monophosphoramidase activity
ALIDE_RS06780	COG3447	MASE1 domain protein
ALIDE_RS06780	COG5001	Diguanylate cyclase
ALIDE_RS06780	COG5002	protein histidine kinase activity
ALIDE_RS06785	COG1129	ABC transporter
ALIDE_RS06790	COG4603	Belongs to the binding-protein-dependent transport system permease family
ALIDE_RS06810	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ALIDE_RS06815	COG1126	abc transporter atp-binding protein
ALIDE_RS06820	COG0765	amino acid transport
ALIDE_RS06825	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALIDE_RS06840	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
ALIDE_RS06850	COG4166	transmembrane transport
ALIDE_RS06855	COG4608	Belongs to the ABC transporter superfamily
ALIDE_RS06860	COG0444	Belongs to the ABC transporter superfamily
ALIDE_RS06865	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
ALIDE_RS06870	COG0601	transmembrane transport
ALIDE_RS06880	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
ALIDE_RS06885	COG0727	PFAM Uncharacterised protein family (UPF0153)
ALIDE_RS06905	COG0727	PFAM Uncharacterised protein family (UPF0153)
ALIDE_RS06920	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
ALIDE_RS06925	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
ALIDE_RS06935	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ALIDE_RS06940	COG0268	Binds directly to 16S ribosomal RNA
ALIDE_RS06945	COG0728	peptidoglycan biosynthetic process
ALIDE_RS06955	COG0589	response to stress
ALIDE_RS06965	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
ALIDE_RS06970	COG0405	Gamma-glutamyltransferase
ALIDE_RS06975	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
ALIDE_RS06985	COG0617	tRNA 3'-terminal CCA addition
ALIDE_RS06990	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
ALIDE_RS06995	COG0463	Glycosyl transferase, family 2
ALIDE_RS07000	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
ALIDE_RS07030	COG0583	DNA-binding transcription factor activity
ALIDE_RS07035	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
ALIDE_RS07065	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS07070	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS07075	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS07080	COG0583	DNA-binding transcription factor activity
ALIDE_RS07180	COG0582	viral genome integration into host DNA
ALIDE_RS07195	COG0513	Belongs to the DEAD box helicase family
ALIDE_RS07200	COG0488	(ABC) transporter
ALIDE_RS07210	COG3191	aminopeptidase activity
ALIDE_RS07240	COG0789	Transcriptional regulator
ALIDE_RS07265	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
ALIDE_RS07265	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
ALIDE_RS07280	COG0052	Belongs to the universal ribosomal protein uS2 family
ALIDE_RS07285	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
ALIDE_RS07290	COG0528	UMP kinase activity
ALIDE_RS07295	COG0233	cytoplasmic translational termination
ALIDE_RS07300	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
ALIDE_RS07305	COG0575	Belongs to the CDS family
ALIDE_RS07310	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
ALIDE_RS07315	COG0750	zinc metalloprotease
ALIDE_RS07330	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ALIDE_RS07335	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
ALIDE_RS07340	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ALIDE_RS07345	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ALIDE_RS07350	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
ALIDE_RS07355	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ALIDE_RS07360	COG4974	Belongs to the 'phage' integrase family
ALIDE_RS07380	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
ALIDE_RS07385	COG0308	aminopeptidase N
ALIDE_RS07390	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
ALIDE_RS07415	COG3842	ATPase activity
ALIDE_RS07420	COG0667	Aldo Keto reductase
ALIDE_RS07425	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
ALIDE_RS07430	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
ALIDE_RS07440	COG3577	Aspartyl protease
ALIDE_RS07445	COG1666	GTP binding
ALIDE_RS07450	COG0812	UDP-N-acetylmuramate dehydrogenase activity
ALIDE_RS07460	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
ALIDE_RS07465	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
ALIDE_RS07470	COG0145	ligase activity
ALIDE_RS07475	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
ALIDE_RS07480	COG4647	ligase activity
ALIDE_RS07485	COG3284	Transcriptional regulator
ALIDE_RS07490	COG0137	argininosuccinate synthase activity
ALIDE_RS07495	COG3123	guanosine phosphorylase activity
ALIDE_RS07505	COG1393	Belongs to the ArsC family
ALIDE_RS07510	COG0285	dihydrofolate synthase activity
ALIDE_RS07520	COG1286	toxin biosynthetic process
ALIDE_RS07535	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ALIDE_RS07585	COG4372	Transposase
ALIDE_RS07630	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ALIDE_RS07645	COG1840	ABC-type Fe3 transport system, periplasmic component
ALIDE_RS07660	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
ALIDE_RS07670	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ALIDE_RS07690	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
ALIDE_RS07705	COG2212	antiporter activity
ALIDE_RS07715	COG0651	ATP synthesis coupled electron transport
ALIDE_RS07720	COG1006	Multisubunit Na H antiporter MnhC subunit
ALIDE_RS07725	COG2111	Na H antiporter
ALIDE_RS07725	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
ALIDE_RS07735	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
ALIDE_RS07745	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ALIDE_RS07755	COG2917	probably involved in intracellular septation
ALIDE_RS07760	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ALIDE_RS07765	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
ALIDE_RS07770	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS07780	COG0559	Belongs to the binding-protein-dependent transport system permease family
ALIDE_RS07790	COG0411	ABC transporter
ALIDE_RS07800	COG1024	Enoyl-CoA hydratase
ALIDE_RS07800	COG1250	3-hydroxyacyl-CoA dehydrogenase
ALIDE_RS07805	COG0183	Belongs to the thiolase family
ALIDE_RS07815	COG0765	amino acid transport
ALIDE_RS07820	COG0765	amino acid transport
ALIDE_RS07825	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS07870	COG0582	viral genome integration into host DNA
ALIDE_RS07890	COG1309	transcriptional regulator
ALIDE_RS07895	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
ALIDE_RS07925	COG0259	pyridoxamine-phosphate oxidase activity
ALIDE_RS07950	COG2183	response to ionizing radiation
ALIDE_RS07975	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS07980	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS07990	COG1609	Transcriptional regulator
ALIDE_RS08015	COG3618	amidohydrolase
ALIDE_RS08050	COG4566	intracellular signal transduction
ALIDE_RS08060	COG2807	transmembrane transport
ALIDE_RS08065	COG0590	tRNA wobble adenosine to inosine editing
ALIDE_RS08075	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
ALIDE_RS08080	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
ALIDE_RS08085	COG0470	DNA polymerase III
ALIDE_RS08095	COG0084	hydrolase, TatD family'
ALIDE_RS08115	COG1802	Transcriptional regulator
ALIDE_RS08120	COG2814	Major facilitator Superfamily
ALIDE_RS08125	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
ALIDE_RS08130	COG4336	lyase activity
ALIDE_RS08135	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
ALIDE_RS08140	COG4770	biotin carboxylase activity
ALIDE_RS08145	COG1132	(ABC) transporter
ALIDE_RS08150	COG0823	Involved in the tonB-independent uptake of proteins
ALIDE_RS08160	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
ALIDE_RS08165	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
ALIDE_RS08175	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ALIDE_RS08285	COG0305	Participates in initiation and elongation during chromosome replication
ALIDE_RS08300	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
ALIDE_RS08385	COG0758	DNA mediated transformation
ALIDE_RS08500	COG0582	viral genome integration into host DNA
ALIDE_RS08510	COG3039	Transposase
ALIDE_RS08535	COG0582	viral genome integration into host DNA
ALIDE_RS08545	COG0741	lytic transglycosylase activity
ALIDE_RS08545	COG1388	LysM domain
ALIDE_RS08550	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
ALIDE_RS08555	COG2226	methyltransferase
ALIDE_RS08560	COG0328	RNA-DNA hybrid ribonuclease activity
ALIDE_RS08565	COG0436	Aminotransferase
ALIDE_RS08570	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ALIDE_RS08575	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ALIDE_RS08575	COG0473	3-isopropylmalate dehydrogenase activity
ALIDE_RS08580	COG0583	DNA-binding transcription factor activity
ALIDE_RS08585	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALIDE_RS08610	COG0303	'Molybdopterin
ALIDE_RS08620	COG0746	molybdenum cofactor guanylyltransferase activity
ALIDE_RS08625	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
ALIDE_RS08640	COG1012	belongs to the aldehyde dehydrogenase family
ALIDE_RS08650	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
ALIDE_RS08655	COG0835	chemotaxis
ALIDE_RS08660	COG0840	transmembrane signaling receptor activity
ALIDE_RS08680	COG0347	Belongs to the P(II) protein family
ALIDE_RS08710	COG1595	DNA-templated transcription, initiation
ALIDE_RS08715	COG0028	Belongs to the TPP enzyme family
ALIDE_RS08720	COG0440	acetolactate synthase activity
ALIDE_RS08725	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
ALIDE_RS08730	COG1183	phosphatidylcholine synthase activity
ALIDE_RS08755	COG0583	DNA-binding transcription factor activity
ALIDE_RS08765	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ALIDE_RS08775	COG1414	Transcriptional regulator
ALIDE_RS08780	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ALIDE_RS08785	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ALIDE_RS08785	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
ALIDE_RS08785	COG0506	proline dehydrogenase activity
ALIDE_RS08805	COG1024	Enoyl-CoA hydratase
ALIDE_RS08810	COG1250	3-hydroxyacyl-CoA dehydrogenase
ALIDE_RS08825	COG2022	thiamine diphosphate biosynthetic process
ALIDE_RS08840	COG0351	phosphomethylpyrimidine kinase
ALIDE_RS08855	COG0492	ferredoxin-NADP+ reductase activity
ALIDE_RS08860	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
ALIDE_RS08870	COG0175	sulfate reduction
ALIDE_RS08875	COG0175	sulfate reduction
ALIDE_RS08890	COG0730	response to heat
ALIDE_RS08895	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
ALIDE_RS08895	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ALIDE_RS08900	COG2860	membrane
ALIDE_RS08905	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
ALIDE_RS08910	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ALIDE_RS08925	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS08930	COG0183	Belongs to the thiolase family
ALIDE_RS08935	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS08945	COG0559	Belongs to the binding-protein-dependent transport system permease family
ALIDE_RS08960	COG0410	ABC transporter
ALIDE_RS08970	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS08995	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
ALIDE_RS09100	COG0582	viral genome integration into host DNA
ALIDE_RS09110	COG1959	2 iron, 2 sulfur cluster binding
ALIDE_RS09125	COG0688	phosphatidylethanolamine metabolic process
ALIDE_RS09130	COG0517	IMP dehydrogenase activity
ALIDE_RS09130	COG1125	glycine betaine transport
ALIDE_RS09135	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
ALIDE_RS09155	COG0776	regulation of translation
ALIDE_RS09165	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
ALIDE_RS09170	COG0287	Prephenate dehydrogenase
ALIDE_RS09175	COG1605	Chorismate mutase
ALIDE_RS09175	COG0077	Prephenate dehydratase
ALIDE_RS09180	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
ALIDE_RS09195	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ALIDE_RS09210	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ALIDE_RS09275	COG4372	Transposase
ALIDE_RS09280	COG0145	ligase activity
ALIDE_RS09300	COG0583	DNA-binding transcription factor activity
ALIDE_RS09305	COG2066	Belongs to the glutaminase family
ALIDE_RS09310	COG1473	amidohydrolase
ALIDE_RS09355	COG2130	NADP-dependent
ALIDE_RS09370	COG2814	Major facilitator Superfamily
ALIDE_RS09375	COG0415	Belongs to the DNA photolyase family
ALIDE_RS09390	COG0583	DNA-binding transcription factor activity
ALIDE_RS09415	COG2828	Protein conserved in bacteria
ALIDE_RS09435	COG3800	Transcriptional regulator
ALIDE_RS09435	COG1396	sequence-specific DNA binding
ALIDE_RS09455	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
ALIDE_RS09470	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS09505	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
ALIDE_RS09510	COG1011	Hydrolase
ALIDE_RS09535	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
ALIDE_RS09540	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
ALIDE_RS09545	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
ALIDE_RS09550	COG0741	lytic transglycosylase activity
ALIDE_RS09575	COG0557	exoribonuclease II activity
ALIDE_RS09580	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS09590	COG2010	Cytochrome c
ALIDE_RS09590	COG1529	Aldehyde oxidase and xanthine dehydrogenase
ALIDE_RS09595	COG3118	belongs to the thioredoxin family
ALIDE_RS09600	COG0779	Required for maturation of 30S ribosomal subunits
ALIDE_RS09605	COG0195	Participates in both transcription termination and antitermination
ALIDE_RS09610	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
ALIDE_RS09615	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
ALIDE_RS09620	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
ALIDE_RS09635	COG1024	Enoyl-CoA hydratase
ALIDE_RS09655	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
ALIDE_RS09660	COG2867	negative regulation of translational initiation
ALIDE_RS09680	COG0519	Catalyzes the synthesis of GMP from XMP
ALIDE_RS09680	COG0518	GMP synthase (glutamine-hydrolyzing) activity
ALIDE_RS09685	COG0582	viral genome integration into host DNA
ALIDE_RS09690	COG0372	Belongs to the citrate synthase family
ALIDE_RS09695	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
ALIDE_RS09700	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
ALIDE_RS09705	COG1053	succinate dehydrogenase
ALIDE_RS09710	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
ALIDE_RS09715	COG2009	succinate dehydrogenase
ALIDE_RS09720	COG2188	Transcriptional regulator
ALIDE_RS09725	COG0039	L-malate dehydrogenase activity
ALIDE_RS09730	COG4106	trans-aconitate 2-methyltransferase activity
ALIDE_RS09740	COG1049	propionate catabolic process, 2-methylcitrate cycle
ALIDE_RS09750	COG0583	DNA-binding transcription factor activity
ALIDE_RS09755	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS09765	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS09770	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ALIDE_RS09790	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
ALIDE_RS09805	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
ALIDE_RS09805	COG3608	succinylglutamate desuccinylase aspartoacylase
ALIDE_RS09835	COG0463	Glycosyl transferase, family 2
ALIDE_RS09840	COG0826	peptidase U32
ALIDE_RS09860	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
ALIDE_RS09875	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
ALIDE_RS09880	COG1845	cytochrome c oxidase, subunit III
ALIDE_RS09885	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ALIDE_RS09890	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ALIDE_RS09895	COG0477	Major facilitator Superfamily
ALIDE_RS09915	COG0824	Thioesterase
ALIDE_RS09920	COG0436	Aminotransferase
ALIDE_RS09925	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
ALIDE_RS09930	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
ALIDE_RS09950	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS09955	COG2918	glutathione biosynthetic process
ALIDE_RS09960	COG1289	transmembrane transporter activity
ALIDE_RS09970	COG0251	oxidation-reduction process
ALIDE_RS10000	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
ALIDE_RS10010	COG0564	pseudouridine synthase activity
ALIDE_RS10065	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ALIDE_RS10075	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
ALIDE_RS10090	COG3384	dioxygenase
ALIDE_RS10095	COG0400	carboxylic ester hydrolase activity
ALIDE_RS10105	COG1522	sequence-specific DNA binding
ALIDE_RS10115	COG0154	amidase activity
ALIDE_RS10285	COG4383	Mu-like prophage protein gp29
ALIDE_RS10290	COG2369	cell adhesion
ALIDE_RS10310	COG4397	Mu-like prophage major head subunit gpT
ALIDE_RS10405	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS10410	COG0583	DNA-binding transcription factor activity
ALIDE_RS10415	COG2186	Transcriptional regulator
ALIDE_RS10420	COG2271	Major facilitator Superfamily
ALIDE_RS10425	COG2084	Dehydrogenase
ALIDE_RS10430	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
ALIDE_RS10435	COG3395	kinase activity
ALIDE_RS10440	COG0235	Class ii aldolase
ALIDE_RS10445	COG3622	Belongs to the hyi family
ALIDE_RS10450	COG3228	Belongs to the MtfA family
ALIDE_RS10455	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
ALIDE_RS10480	COG0215	cysteine-tRNA ligase activity
ALIDE_RS10495	COG0037	tRNA processing
ALIDE_RS10500	COG0527	aspartate kinase activity
ALIDE_RS10515	COG1309	transcriptional regulator
ALIDE_RS10545	COG1136	(ABC) transporter
ALIDE_RS10550	COG2951	lytic endotransglycosylase activity
ALIDE_RS10555	COG2925	Exonuclease
ALIDE_RS10560	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ALIDE_RS10565	COG0628	permease
ALIDE_RS10575	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
ALIDE_RS10585	COG0217	transcriptional regulatory protein
ALIDE_RS10600	COG1271	oxidase subunit
ALIDE_RS10605	COG1294	oxidase, subunit
ALIDE_RS10615	COG1346	cytolysis
ALIDE_RS10625	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ALIDE_RS10630	COG0625	glutathione transferase activity
ALIDE_RS10635	COG0433	COG0433 Predicted ATPase
ALIDE_RS10640	COG0217	transcriptional regulatory protein
ALIDE_RS10645	COG0151	Belongs to the GarS family
ALIDE_RS10650	COG0408	coproporphyrinogen oxidase activity
ALIDE_RS10655	COG0799	negative regulation of ribosome biogenesis
ALIDE_RS10660	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
ALIDE_RS10665	COG0424	maF-like protein
ALIDE_RS10680	COG0535	radical SAM domain protein
ALIDE_RS10695	COG3391	amine dehydrogenase activity
ALIDE_RS10700	COG2010	Cytochrome c
ALIDE_RS10710	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
ALIDE_RS10710	COG1648	precorrin-2 dehydrogenase activity
ALIDE_RS10715	COG1530	ribonuclease E activity
ALIDE_RS10720	COG3706	GGDEF domain
ALIDE_RS10730	COG0436	Aminotransferase
ALIDE_RS10735	COG0583	DNA-binding transcription factor activity
ALIDE_RS10755	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
ALIDE_RS10775	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ALIDE_RS10805	COG0589	response to stress
ALIDE_RS10820	COG0183	Belongs to the thiolase family
ALIDE_RS10825	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS10840	COG0545	Peptidyl-prolyl cis-trans isomerase
ALIDE_RS10845	COG2197	response regulator
ALIDE_RS10885	COG1595	DNA-templated transcription, initiation
ALIDE_RS10895	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
ALIDE_RS10900	COG3048	D-serine ammonia-lyase activity
ALIDE_RS10905	COG1739	Uncharacterized protein family UPF0029
ALIDE_RS10925	COG0556	nucleotide-excision repair
ALIDE_RS10930	COG1959	2 iron, 2 sulfur cluster binding
ALIDE_RS10935	COG1104	cysteine desulfurase activity
ALIDE_RS10940	COG0822	iron-sulfur transferase activity
ALIDE_RS10955	COG0443	Heat shock 70 kDa protein
ALIDE_RS10960	COG0633	Ferredoxin
ALIDE_RS10980	COG0579	oxidoreductase
ALIDE_RS11000	COG0167	dihydroorotate dehydrogenase activity
ALIDE_RS11005	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
ALIDE_RS11020	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
ALIDE_RS11025	COG4566	intracellular signal transduction
ALIDE_RS11035	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
ALIDE_RS11040	COG0508	dehydrogenase complex catalyzes the overall conversion of
ALIDE_RS11045	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ALIDE_RS11075	COG0583	DNA-binding transcription factor activity
ALIDE_RS11080	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ALIDE_RS11085	COG2079	MmgE PrpD family protein
ALIDE_RS11090	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS11125	COG0791	NLP P60 protein
ALIDE_RS11130	COG1113	amino acid transport
ALIDE_RS11135	COG2814	Major facilitator Superfamily
ALIDE_RS11145	COG1742	UPF0060 membrane protein
ALIDE_RS11155	COG1196	nuclear chromosome segregation
ALIDE_RS11165	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
ALIDE_RS11170	COG1752	Esterase of the alpha-beta hydrolase superfamily
ALIDE_RS11210	COG3243	poly(R)-hydroxyalkanoic acid synthase
ALIDE_RS11215	COG0183	Belongs to the thiolase family
ALIDE_RS11220	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS11225	COG0488	(ABC) transporter
ALIDE_RS11235	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS11240	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS11245	COG0583	DNA-binding transcription factor activity
ALIDE_RS11250	COG2890	protein-(glutamine-N5) methyltransferase activity
ALIDE_RS11255	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ALIDE_RS11265	COG2171	N-acyltransferase activity
ALIDE_RS11275	COG2878	Part of a membrane complex involved in electron transport
ALIDE_RS11300	COG1309	transcriptional regulator
ALIDE_RS11310	COG1022	Amp-dependent synthetase and ligase
ALIDE_RS11315	COG1802	Transcriptional regulator
ALIDE_RS11320	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ALIDE_RS11330	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS11340	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
ALIDE_RS11340	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
ALIDE_RS11345	COG1703	isobutyryl-CoA mutase activity
ALIDE_RS11350	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ALIDE_RS11355	COG4770	biotin carboxylase activity
ALIDE_RS11365	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
ALIDE_RS11380	COG0642	Histidine kinase
ALIDE_RS11395	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ALIDE_RS11410	COG0446	pyridine nucleotide-disulphide oxidoreductase
ALIDE_RS11415	COG1538	Outer membrane efflux protein
ALIDE_RS11430	COG0640	Transcriptional regulator
ALIDE_RS11450	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS11465	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS11470	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
ALIDE_RS11500	COG0745	RESPONSE REGULATOR receiver
ALIDE_RS11510	COG1024	Enoyl-CoA hydratase
ALIDE_RS11520	COG1064	alcohol dehydrogenase
ALIDE_RS11525	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS11530	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS11540	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS11560	COG4120	Belongs to the binding-protein-dependent transport system permease family
ALIDE_RS11570	COG3284	Transcriptional regulator
ALIDE_RS11595	COG0508	dehydrogenase complex catalyzes the overall conversion of
ALIDE_RS11600	COG0508	dehydrogenase complex catalyzes the overall conversion of
ALIDE_RS11600	COG0022	dehydrogenase e1 component
ALIDE_RS11605	COG0022	dehydrogenase e1 component
ALIDE_RS11610	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ALIDE_RS11620	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
ALIDE_RS11630	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
ALIDE_RS11630	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
ALIDE_RS11640	COG0404	The glycine cleavage system catalyzes the degradation of glycine
ALIDE_RS11645	COG0509	glycine decarboxylation via glycine cleavage system
ALIDE_RS11650	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
ALIDE_RS11650	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
ALIDE_RS11660	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
ALIDE_RS11665	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
ALIDE_RS11685	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ALIDE_RS11700	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS11720	COG0123	including yeast histone deacetylase and acetoin utilization protein
ALIDE_RS11725	COG0714	Associated with various cellular activities
ALIDE_RS11740	COG2951	lytic endotransglycosylase activity
ALIDE_RS11745	COG3958	Transketolase
ALIDE_RS11750	COG3959	Transketolase, thiamine diphosphate binding domain
ALIDE_RS11755	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
ALIDE_RS11765	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
ALIDE_RS11770	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS11775	COG0583	DNA-binding transcription factor activity
ALIDE_RS11785	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ALIDE_RS11790	COG0583	DNA-binding transcription factor activity
ALIDE_RS11800	COG0683	leucine binding
ALIDE_RS11810	COG1136	(ABC) transporter
ALIDE_RS11810	COG0577	efflux transmembrane transporter activity
ALIDE_RS11815	COG1136	(ABC) transporter
ALIDE_RS11815	COG0577	efflux transmembrane transporter activity
ALIDE_RS11820	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALIDE_RS11830	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
ALIDE_RS11835	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
ALIDE_RS11835	COG0617	tRNA 3'-terminal CCA addition
ALIDE_RS11835	COG0517	IMP dehydrogenase activity
ALIDE_RS11850	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ALIDE_RS11855	COG1538	Outer membrane efflux protein
ALIDE_RS11860	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
ALIDE_RS11870	COG0243	molybdopterin cofactor binding
ALIDE_RS11875	COG2223	nitrite transmembrane transporter activity
ALIDE_RS11885	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ALIDE_RS11895	COG1607	acyl-coa hydrolase
ALIDE_RS11900	COG2081	HI0933 family
ALIDE_RS11935	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ALIDE_RS11940	COG0508	dehydrogenase complex catalyzes the overall conversion of
ALIDE_RS11945	COG1024	Enoyl-CoA hydratase
ALIDE_RS11950	COG0022	dehydrogenase e1 component
ALIDE_RS11955	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
ALIDE_RS11980	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS12000	COG0822	iron-sulfur transferase activity
ALIDE_RS12005	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
ALIDE_RS12015	COG0396	ATPase activity
ALIDE_RS12020	COG0719	Fe-S assembly protein
ALIDE_RS12025	COG0828	Belongs to the bacterial ribosomal protein bS21 family
ALIDE_RS12035	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
ALIDE_RS12055	COG2755	lipolytic protein G-D-S-L family
ALIDE_RS12055	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
ALIDE_RS12060	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
ALIDE_RS12060	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
ALIDE_RS12070	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ALIDE_RS12075	COG3473	Maleate cis-trans isomerase
ALIDE_RS12105	COG0683	leucine binding
ALIDE_RS12110	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ALIDE_RS12120	COG2186	Transcriptional regulator
ALIDE_RS12125	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
ALIDE_RS12130	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
ALIDE_RS12135	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
ALIDE_RS12140	COG4208	sulfate ABC transporter
ALIDE_RS12150	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
ALIDE_RS12165	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
ALIDE_RS12175	COG1464	Belongs to the NlpA lipoprotein family
ALIDE_RS12180	COG2011	ABC-type metal ion transport system permease component
ALIDE_RS12185	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
ALIDE_RS12195	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
ALIDE_RS12200	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
ALIDE_RS12205	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
ALIDE_RS12220	COG4149	molybdate abc transporter
ALIDE_RS12250	COG1120	ATPase activity
ALIDE_RS12255	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ALIDE_RS12260	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
ALIDE_RS12270	COG4206	TonB-dependent receptor
ALIDE_RS12300	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
ALIDE_RS12310	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
ALIDE_RS12315	COG0254	rRNA binding
ALIDE_RS12325	COG0534	Mate efflux family protein
ALIDE_RS12340	COG0704	Plays a role in the regulation of phosphate uptake
ALIDE_RS12345	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
ALIDE_RS12350	COG0581	inorganic phosphate transmembrane transporter activity
ALIDE_RS12355	COG0573	inorganic phosphate transmembrane transporter activity
ALIDE_RS12360	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
ALIDE_RS12390	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
ALIDE_RS12400	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ALIDE_RS12405	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
ALIDE_RS12410	COG1534	Rna-binding protein
ALIDE_RS12425	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
ALIDE_RS12430	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ALIDE_RS12435	COG0505	Belongs to the CarA family
ALIDE_RS12445	COG0789	Transcriptional regulator
ALIDE_RS12450	COG0776	regulation of translation
ALIDE_RS12455	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ALIDE_RS12455	COG0072	phenylalanine-tRNA ligase activity
ALIDE_RS12460	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
ALIDE_RS12465	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
ALIDE_RS12470	COG0291	Belongs to the bacterial ribosomal protein bL35 family
ALIDE_RS12475	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
ALIDE_RS12480	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
ALIDE_RS12530	COG3193	protein, possibly involved in utilization of glycolate and propanediol
ALIDE_RS12535	COG0670	Belongs to the BI1 family
ALIDE_RS12555	COG2076	Multidrug Resistance protein
ALIDE_RS12570	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
ALIDE_RS12580	COG5507	3-demethylubiquinone-9 3-methyltransferase
ALIDE_RS12615	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
ALIDE_RS12620	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
ALIDE_RS12625	COG4181	ATPase activity
ALIDE_RS12640	COG0626	cystathionine gamma-synthase activity
ALIDE_RS12665	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ALIDE_RS12675	COG2133	pyrroloquinoline quinone binding
ALIDE_RS12680	COG0583	DNA-binding transcription factor activity
ALIDE_RS12695	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS12720	COG0133	tryptophan synthase activity
ALIDE_RS12725	COG3171	Protein conserved in bacteria
ALIDE_RS12730	COG2721	sulfolactate sulfo-lyase activity
ALIDE_RS12735	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS12740	COG4948	Mandelate Racemase Muconate Lactonizing
ALIDE_RS12750	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS12755	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ALIDE_RS12765	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
ALIDE_RS12770	COG4948	Mandelate Racemase Muconate Lactonizing
ALIDE_RS12775	COG1012	belongs to the aldehyde dehydrogenase family
ALIDE_RS12780	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
ALIDE_RS12785	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
ALIDE_RS12790	COG1741	Belongs to the pirin family
ALIDE_RS12795	COG0583	DNA-binding transcription factor activity
ALIDE_RS12800	COG0493	'glutamate synthase
ALIDE_RS12800	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
ALIDE_RS12805	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
ALIDE_RS12810	COG0220	tRNA (guanine-N7-)-methyltransferase activity
ALIDE_RS12820	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
ALIDE_RS12825	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ALIDE_RS12835	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
ALIDE_RS12840	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
ALIDE_RS12845	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
ALIDE_RS12850	COG1802	Transcriptional regulator
ALIDE_RS12855	COG0564	pseudouridine synthase activity
ALIDE_RS12860	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
ALIDE_RS12860	COG0045	succinate-CoA ligase (ADP-forming) activity
ALIDE_RS12860	COG1042	CoA-binding domain protein
ALIDE_RS12885	COG3718	enzyme involved in inositol metabolism
ALIDE_RS12900	COG2169	Transcriptional regulator
ALIDE_RS12920	COG1619	proteins homologs of microcin C7 resistance protein MccF
ALIDE_RS12935	COG0826	peptidase U32
ALIDE_RS12945	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ALIDE_RS12950	COG4301	Catalyzes the SAM-dependent triple methylation of the alpha-amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine
ALIDE_RS12955	COG3047	cAMP biosynthetic process
ALIDE_RS12960	COG2354	Protein conserved in bacteria
ALIDE_RS12965	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
ALIDE_RS12965	COG0047	phosphoribosylformylglycinamidine synthase activity
ALIDE_RS12970	COG0024	Methionine aminopeptidase
ALIDE_RS12980	COG2233	PERMEase
ALIDE_RS12985	COG0242	peptide deformylase activity
ALIDE_RS12990	COG2832	Protein of unknown function (DUF454)
ALIDE_RS13030	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
ALIDE_RS13035	COG1570	exodeoxyribonuclease VII activity
ALIDE_RS13040	COG0811	peptide transport
ALIDE_RS13050	COG1663	tetraacyldisaccharide 4'-kinase activity
ALIDE_RS13055	COG2835	tetraacyldisaccharide 4'-kinase activity
ALIDE_RS13060	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
ALIDE_RS13065	COG0563	adenylate kinase activity
ALIDE_RS13070	COG0252	asparaginase activity
ALIDE_RS13075	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
ALIDE_RS13085	COG1643	Atp-dependent helicase
ALIDE_RS13090	COG0183	Belongs to the thiolase family
ALIDE_RS13095	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS13100	COG1268	BioY protein
ALIDE_RS13110	COG1122	ATPase activity
ALIDE_RS13125	COG0346	lactoylglutathione lyase activity
ALIDE_RS13130	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
ALIDE_RS13135	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ALIDE_RS13155	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ALIDE_RS13160	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS13165	COG3485	protocatechuate 3,4-dioxygenase
ALIDE_RS13180	COG0800	Aldolase
ALIDE_RS13190	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
ALIDE_RS13195	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
ALIDE_RS13200	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
ALIDE_RS13205	COG3265	gluconokinase activity
ALIDE_RS13210	COG1609	Transcriptional regulator
ALIDE_RS13215	COG0542	response to heat
ALIDE_RS13220	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
ALIDE_RS13235	COG1199	ATP-dependent helicase activity
ALIDE_RS13240	COG0631	protein serine/threonine phosphatase activity
ALIDE_RS13250	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
ALIDE_RS13255	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
ALIDE_RS13260	COG0508	dehydrogenase complex catalyzes the overall conversion of
ALIDE_RS13265	COG0567	Dehydrogenase, E1 component
ALIDE_RS13270	COG0628	permease
ALIDE_RS13295	COG0589	response to stress
ALIDE_RS13300	COG4172	Belongs to the ABC transporter superfamily
ALIDE_RS13305	COG4239	(ABC) transporter, permease
ALIDE_RS13310	COG4174	ABC transporter (Permease)
ALIDE_RS13335	COG2841	Protein conserved in bacteria
ALIDE_RS13340	COG1793	dna ligase
ALIDE_RS13345	COG0861	Integral membrane protein TerC family
ALIDE_RS13365	COG0583	DNA-binding transcription factor activity
ALIDE_RS13370	COG0028	Belongs to the TPP enzyme family
ALIDE_RS13380	COG1742	UPF0060 membrane protein
ALIDE_RS13390	COG0431	NADPH-dependent FMN reductase
ALIDE_RS13395	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
ALIDE_RS13425	COG1230	cation diffusion facilitator family transporter
ALIDE_RS13435	COG0121	glutamine amidotransferase
ALIDE_RS13445	COG0183	Belongs to the thiolase family
ALIDE_RS13520	COG1192	Involved in chromosome partitioning
ALIDE_RS13535	COG0583	DNA-binding transcription factor activity
ALIDE_RS13540	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ALIDE_RS13610	COG2132	Multicopper oxidase
ALIDE_RS13620	COG2205	protein histidine kinase activity
ALIDE_RS13630	COG2132	Multicopper oxidase
ALIDE_RS13655	COG2217	Heavy metal translocating P-type atpase
ALIDE_RS13665	COG0583	DNA-binding transcription factor activity
ALIDE_RS13690	COG0583	DNA-binding transcription factor activity
ALIDE_RS13695	COG0473	3-isopropylmalate dehydrogenase activity
ALIDE_RS13700	COG1752	Esterase of the alpha-beta hydrolase superfamily
ALIDE_RS13715	COG2721	sulfolactate sulfo-lyase activity
ALIDE_RS13720	COG1012	belongs to the aldehyde dehydrogenase family
ALIDE_RS13735	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
ALIDE_RS13750	COG1228	amidohydrolase
ALIDE_RS13760	COG1126	abc transporter atp-binding protein
ALIDE_RS13765	COG0765	amino acid transport
ALIDE_RS13770	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALIDE_RS13780	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
ALIDE_RS13785	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
ALIDE_RS13795	COG2986	histidine ammonia-lyase
ALIDE_RS13800	COG2188	Transcriptional regulator
ALIDE_RS13810	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
ALIDE_RS13830	COG0583	DNA-binding transcription factor activity
ALIDE_RS13845	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ALIDE_RS13850	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS13855	COG0583	DNA-binding transcription factor activity
ALIDE_RS13865	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
ALIDE_RS13875	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
ALIDE_RS13890	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
ALIDE_RS13920	COG0753	catalase activity
ALIDE_RS13925	COG3634	alkyl hydroperoxide reductase activity
ALIDE_RS13950	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
ALIDE_RS13955	COG0181	hydroxymethylbilane synthase activity
ALIDE_RS13975	COG3278	Belongs to the heme-copper respiratory oxidase family
ALIDE_RS14000	COG0525	valine-tRNA ligase activity
ALIDE_RS14005	COG1210	Utp--glucose-1-phosphate uridylyltransferase
ALIDE_RS14010	COG0425	Belongs to the sulfur carrier protein TusA family
ALIDE_RS14015	COG2816	NAD+ diphosphatase activity
ALIDE_RS14030	COG2948	multi-organism process
ALIDE_RS14035	COG3504	Conjugal transfer protein
ALIDE_RS14060	COG3451	type IV secretory pathway VirB4
ALIDE_RS14070	COG3838	Conjugal transfer protein Trbc
ALIDE_RS14075	COG4962	Type ii secretion system protein e
ALIDE_RS14095	COG0583	DNA-binding transcription factor activity
ALIDE_RS14110	COG0589	response to stress
ALIDE_RS14115	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS14130	COG1309	transcriptional regulator
ALIDE_RS14140	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALIDE_RS14145	COG1131	(ABC) transporter
ALIDE_RS14150	COG0842	Transport permease protein
ALIDE_RS14155	COG0842	Transport permease protein
ALIDE_RS14165	COG1454	alcohol dehydrogenase
ALIDE_RS14175	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ALIDE_RS14180	COG1611	Belongs to the LOG family
ALIDE_RS14200	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
ALIDE_RS14245	COG1477	protein flavinylation
ALIDE_RS14255	COG3038	cytochrome b561
ALIDE_RS14280	COG4959	Type IV secretory pathway protease TraF
ALIDE_RS14315	COG1024	Enoyl-CoA hydratase
ALIDE_RS14330	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
ALIDE_RS14340	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ALIDE_RS14345	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
ALIDE_RS14350	COG1024	Enoyl-CoA hydratase
ALIDE_RS14360	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ALIDE_RS14380	COG0322	excinuclease ABC activity
ALIDE_RS14415	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS14420	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS14425	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS14450	COG0559	Belongs to the binding-protein-dependent transport system permease family
ALIDE_RS14470	COG1024	Enoyl-CoA hydratase
ALIDE_RS14475	COG1012	belongs to the aldehyde dehydrogenase family
ALIDE_RS14480	COG1012	belongs to the aldehyde dehydrogenase family
ALIDE_RS14500	COG1012	belongs to the aldehyde dehydrogenase family
ALIDE_RS14505	COG1063	alcohol dehydrogenase
ALIDE_RS14525	COG0411	ABC transporter
ALIDE_RS14550	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
ALIDE_RS14565	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS14570	COG0583	DNA-binding transcription factor activity
ALIDE_RS14580	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS14590	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ALIDE_RS14595	COG0183	Belongs to the thiolase family
ALIDE_RS14605	COG2030	dehydratase
ALIDE_RS14610	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS14660	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS14670	COG1024	Enoyl-CoA hydratase
ALIDE_RS14675	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS14685	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS14705	COG0183	Belongs to the thiolase family
ALIDE_RS14720	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS14730	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS14755	COG1902	pentaerythritol trinitrate reductase activity
ALIDE_RS14755	COG0446	pyridine nucleotide-disulphide oxidoreductase
ALIDE_RS14775	COG0559	Belongs to the binding-protein-dependent transport system permease family
ALIDE_RS14790	COG0778	Nitroreductase
ALIDE_RS14805	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS14810	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS14820	COG2030	dehydratase
ALIDE_RS14825	COG2301	Belongs to the HpcH HpaI aldolase family
ALIDE_RS14830	COG1309	transcriptional regulator
ALIDE_RS14845	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
ALIDE_RS14850	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
ALIDE_RS14855	COG0740	serine-type endopeptidase activity
ALIDE_RS14860	COG0544	peptidyl-prolyl cis-trans isomerase activity
ALIDE_RS14870	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ALIDE_RS14885	COG1562	ergosterol biosynthetic process
ALIDE_RS14890	COG0840	transmembrane signaling receptor activity
ALIDE_RS14895	COG1233	COG1233 Phytoene dehydrogenase and related
ALIDE_RS14905	COG1295	ribonuclease BN
ALIDE_RS14915	COG0277	FAD linked oxidase domain protein
ALIDE_RS14920	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
ALIDE_RS14935	COG1360	Flagellar Motor Protein
ALIDE_RS14955	COG3293	Transposase
ALIDE_RS14960	COG0745	RESPONSE REGULATOR receiver
ALIDE_RS14965	COG2205	protein histidine kinase activity
ALIDE_RS14975	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
ALIDE_RS14980	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
ALIDE_RS14990	COG0708	Exodeoxyribonuclease III
ALIDE_RS15010	COG0174	glutamine synthetase
ALIDE_RS15040	COG1187	pseudouridine synthase activity
ALIDE_RS15075	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
ALIDE_RS15080	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
ALIDE_RS15090	COG0330	HflC and HflK could
ALIDE_RS15095	COG0330	HflC and HflK could
ALIDE_RS15100	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
ALIDE_RS15105	COG1923	regulation of RNA biosynthetic process
ALIDE_RS15110	COG1160	GTP binding
ALIDE_RS15115	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ALIDE_RS15125	COG0124	histidyl-tRNA synthetase
ALIDE_RS15130	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
ALIDE_RS15145	COG0820	rRNA (adenine-C2-)-methyltransferase activity
ALIDE_RS15150	COG0105	UTP biosynthetic process
ALIDE_RS15155	COG1187	pseudouridine synthase activity
ALIDE_RS15160	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
ALIDE_RS15165	COG0564	pseudouridine synthase activity
ALIDE_RS15175	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
ALIDE_RS15180	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
ALIDE_RS15190	COG3540	Alkaline phosphatase
ALIDE_RS15205	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS15220	COG0179	Fumarylacetoacetate (FAA) hydrolase
ALIDE_RS15230	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
ALIDE_RS15245	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
ALIDE_RS15260	COG1968	undecaprenyl-diphosphatase activity
ALIDE_RS15275	COG2972	Histidine kinase
ALIDE_RS15280	COG3279	Response regulator of the LytR AlgR family
ALIDE_RS15285	COG2814	Major facilitator Superfamily
ALIDE_RS15295	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ALIDE_RS15300	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
ALIDE_RS15305	COG2916	Histone family protein nucleoid-structuring protein H-NS
ALIDE_RS15310	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ALIDE_RS15320	COG3245	cytochrome
ALIDE_RS15330	COG4263	nitrous-oxide reductase activity
ALIDE_RS15350	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
ALIDE_RS15365	COG0513	Belongs to the DEAD box helicase family
ALIDE_RS15370	COG2321	neutral zinc metallopeptidase
ALIDE_RS15375	COG0717	Belongs to the dCTP deaminase family
ALIDE_RS15400	COG0405	Gamma-glutamyltransferase
ALIDE_RS15410	COG2084	Dehydrogenase
ALIDE_RS15415	COG3622	Belongs to the hyi family
ALIDE_RS15420	COG3960	tartronate-semialdehyde synthase activity
ALIDE_RS15425	COG0583	DNA-binding transcription factor activity
ALIDE_RS15435	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
ALIDE_RS15460	COG0583	DNA-binding transcription factor activity
ALIDE_RS15465	COG2186	Transcriptional regulator
ALIDE_RS15480	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
ALIDE_RS15500	COG0840	transmembrane signaling receptor activity
ALIDE_RS15505	COG2233	PERMEase
ALIDE_RS15510	COG0280	phosphate acetyltransferase
ALIDE_RS15510	COG0281	malic enzyme
ALIDE_RS15535	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
ALIDE_RS15540	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
ALIDE_RS15545	COG1012	belongs to the aldehyde dehydrogenase family
ALIDE_RS15555	COG0359	binds to the 23S rRNA
ALIDE_RS15560	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
ALIDE_RS15565	COG2965	DNA replication, synthesis of RNA primer
ALIDE_RS15570	COG0360	Binds together with S18 to 16S ribosomal RNA
ALIDE_RS15575	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
ALIDE_RS15580	COG0443	Heat shock 70 kDa protein
ALIDE_RS15585	COG0484	heat shock protein binding
ALIDE_RS15595	COG3033	Beta-eliminating lyase
ALIDE_RS15600	COG0826	peptidase U32
ALIDE_RS15605	COG0826	peptidase U32
ALIDE_RS15610	COG3154	lipid carrier protein
ALIDE_RS15625	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
ALIDE_RS15635	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
ALIDE_RS15645	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
ALIDE_RS15650	COG5510	response to toxic substance
ALIDE_RS15655	COG0066	3-isopropylmalate dehydratase activity
ALIDE_RS15660	COG0473	3-isopropylmalate dehydrogenase activity
ALIDE_RS15675	COG0101	tRNA pseudouridine synthase activity
ALIDE_RS15680	COG0135	phosphoribosylanthranilate isomerase activity
ALIDE_RS15685	COG0133	tryptophan synthase activity
ALIDE_RS15690	COG0159	tryptophan synthase activity
ALIDE_RS15695	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
ALIDE_RS15700	COG0762	integral membrane protein
ALIDE_RS15720	COG0110	maltose O-acetyltransferase activity
ALIDE_RS15725	COG0438	transferase activity, transferring glycosyl groups
ALIDE_RS15740	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
ALIDE_RS15745	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
ALIDE_RS15750	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
ALIDE_RS15790	COG1472	Belongs to the glycosyl hydrolase 3 family
ALIDE_RS15795	COG0736	holo-[acyl-carrier-protein] synthase activity
ALIDE_RS15800	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
ALIDE_RS15805	COG1381	Involved in DNA repair and RecF pathway recombination
ALIDE_RS15810	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
ALIDE_RS15815	COG0571	ribonuclease III activity
ALIDE_RS15830	COG0481	GTPase activity
ALIDE_RS15835	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ALIDE_RS15860	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
ALIDE_RS15865	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
ALIDE_RS15870	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS15880	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
ALIDE_RS15885	COG0416	fatty acid biosynthetic process
ALIDE_RS15890	COG0333	Belongs to the bacterial ribosomal protein bL32 family
ALIDE_RS15895	COG1399	metal-binding, possibly nucleic acid-binding protein
ALIDE_RS15900	COG0424	maF-like protein
ALIDE_RS15905	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
ALIDE_RS15910	COG0616	signal peptide processing
ALIDE_RS15910	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
ALIDE_RS15925	COG0564	pseudouridine synthase activity
ALIDE_RS15930	COG1530	ribonuclease E activity
ALIDE_RS15935	COG3022	response to hydroperoxide
ALIDE_RS15945	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
ALIDE_RS15945	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
ALIDE_RS15950	COG0840	transmembrane signaling receptor activity
ALIDE_RS15955	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
ALIDE_RS15960	COG0583	DNA-binding transcription factor activity
ALIDE_RS15970	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS15975	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS15985	COG1304	FMN binding
ALIDE_RS15990	COG2885	chlorophyll binding
ALIDE_RS15995	COG3300	MHYT domain
ALIDE_RS15995	COG5001	Diguanylate cyclase
ALIDE_RS16005	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ALIDE_RS16015	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS16030	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS16035	COG0252	asparaginase activity
ALIDE_RS16050	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
ALIDE_RS16060	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS16065	COG0165	Argininosuccinate lyase
ALIDE_RS16070	COG3275	phosphorelay sensor kinase activity
ALIDE_RS16080	COG2719	SpoVR family
ALIDE_RS16085	COG2718	Belongs to the UPF0229 family
ALIDE_RS16090	COG2766	serine protein kinase
ALIDE_RS16095	COG1959	2 iron, 2 sulfur cluster binding
ALIDE_RS16100	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
ALIDE_RS16105	COG2346	COG2346, Truncated hemoglobins
ALIDE_RS16120	COG0667	Aldo Keto reductase
ALIDE_RS16125	COG2900	Belongs to the SlyX family
ALIDE_RS16130	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ALIDE_RS16140	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS16145	COG0154	amidase activity
ALIDE_RS16155	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
ALIDE_RS16165	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
ALIDE_RS16170	COG1492	cobalamin metabolic process
ALIDE_RS16180	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
ALIDE_RS16215	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ALIDE_RS16215	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
ALIDE_RS16220	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
ALIDE_RS16230	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
ALIDE_RS16250	COG0542	response to heat
ALIDE_RS16255	COG0314	molybdopterin synthase activity
ALIDE_RS16270	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ALIDE_RS16280	COG0303	'Molybdopterin
ALIDE_RS16285	COG1763	Mo-molybdopterin cofactor biosynthetic process
ALIDE_RS16290	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
ALIDE_RS16295	COG1487	ribonuclease activity
ALIDE_RS16310	COG0436	Aminotransferase
ALIDE_RS16335	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS16340	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS16360	COG0183	Belongs to the thiolase family
ALIDE_RS16370	COG0183	Belongs to the thiolase family
ALIDE_RS16375	COG1024	Enoyl-CoA hydratase
ALIDE_RS16380	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS16400	COG1024	Enoyl-CoA hydratase
ALIDE_RS16405	COG1250	3-hydroxyacyl-CoA dehydrogenase
ALIDE_RS16405	COG1024	Enoyl-CoA hydratase
ALIDE_RS16410	COG2801	Transposase and inactivated derivatives
ALIDE_RS16420	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS16425	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS16430	COG1024	Enoyl-CoA hydratase
ALIDE_RS16435	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
ALIDE_RS16440	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS16445	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS16450	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS16455	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS16460	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS16475	COG1902	pentaerythritol trinitrate reductase activity
ALIDE_RS16480	COG2226	methyltransferase
ALIDE_RS16485	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
ALIDE_RS16495	COG1120	ATPase activity
ALIDE_RS16500	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
ALIDE_RS16520	COG4206	TonB-dependent receptor
ALIDE_RS16540	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
ALIDE_RS16555	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
ALIDE_RS16590	COG3278	Belongs to the heme-copper respiratory oxidase family
ALIDE_RS16610	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS16630	COG1802	Transcriptional regulator
ALIDE_RS16635	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
ALIDE_RS16650	COG0129	dihydroxy-acid dehydratase activity
ALIDE_RS16655	COG0129	dihydroxy-acid dehydratase activity
ALIDE_RS16670	COG1136	(ABC) transporter
ALIDE_RS16675	COG4591	ABC-type transport system involved in lipoprotein release permease component
ALIDE_RS16685	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
ALIDE_RS16690	COG0840	transmembrane signaling receptor activity
ALIDE_RS16695	COG0613	PHP domain protein
ALIDE_RS16700	COG0009	L-threonylcarbamoyladenylate synthase
ALIDE_RS16710	COG1994	Peptidase M50
ALIDE_RS16715	COG0180	Tryptophanyl-tRNA synthetase
ALIDE_RS16720	COG0745	RESPONSE REGULATOR receiver
ALIDE_RS16735	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
ALIDE_RS16750	COG3781	membrane
ALIDE_RS16755	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
ALIDE_RS16765	COG1253	flavin adenine dinucleotide binding
ALIDE_RS16770	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
ALIDE_RS16775	COG1047	Peptidyl-prolyl cis-trans
ALIDE_RS16780	COG2003	Belongs to the UPF0758 family
ALIDE_RS16790	COG1193	negative regulation of DNA recombination
ALIDE_RS16800	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
ALIDE_RS16805	COG0066	3-isopropylmalate dehydratase activity
ALIDE_RS16815	COG4626	Terminase
ALIDE_RS16815	COG1802	Transcriptional regulator
ALIDE_RS16840	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
ALIDE_RS16845	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
ALIDE_RS16865	COG0437	4 iron, 4 sulfur cluster binding
ALIDE_RS16870	COG3383	formate dehydrogenase (NAD+) activity
ALIDE_RS16900	COG3383	formate dehydrogenase (NAD+) activity
ALIDE_RS16920	COG2186	Transcriptional regulator
ALIDE_RS16925	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS16930	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS16940	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS16950	COG0489	protein tyrosine kinase activity
ALIDE_RS16965	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
ALIDE_RS16980	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ALIDE_RS16980	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
ALIDE_RS16995	COG3135	benzoate transporter
ALIDE_RS17005	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
ALIDE_RS17025	COG0028	Belongs to the TPP enzyme family
ALIDE_RS17055	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
ALIDE_RS17070	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
ALIDE_RS17080	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
ALIDE_RS17085	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
ALIDE_RS17095	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS17120	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
ALIDE_RS17125	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
ALIDE_RS17135	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
ALIDE_RS17140	COG0588	phosphoglycerate mutase activity
ALIDE_RS17145	COG0793	Belongs to the peptidase S41A family
ALIDE_RS17150	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
ALIDE_RS17160	COG2197	response regulator
ALIDE_RS17180	COG2823	Periplasmic or secreted lipoprotein
ALIDE_RS17185	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
ALIDE_RS17190	COG0742	ribosomal rna small subunit methyltransferase
ALIDE_RS17195	COG0612	Peptidase, M16
ALIDE_RS17200	COG0612	Peptidase, M16
ALIDE_RS17210	COG0583	DNA-binding transcription factor activity
ALIDE_RS17215	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
ALIDE_RS17225	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS17230	COG4948	Mandelate Racemase Muconate Lactonizing
ALIDE_RS17260	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
ALIDE_RS17265	COG2706	6-phosphogluconolactonase activity
ALIDE_RS17290	COG0642	Histidine kinase
ALIDE_RS17300	COG3038	cytochrome b561
ALIDE_RS17330	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
ALIDE_RS17335	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS17340	COG1999	signal sequence binding
ALIDE_RS17345	COG0109	protoheme IX farnesyltransferase activity
ALIDE_RS17380	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
ALIDE_RS17385	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ALIDE_RS17395	COG2226	methyltransferase
ALIDE_RS17400	COG1040	competence protein
ALIDE_RS17405	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
ALIDE_RS17425	COG1280	lysine exporter protein (LysE YggA)
ALIDE_RS17430	COG0475	glutathione-regulated potassium exporter activity
ALIDE_RS17430	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
ALIDE_RS17445	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
ALIDE_RS17450	COG0066	3-isopropylmalate dehydratase activity
ALIDE_RS17480	COG1473	amidohydrolase
ALIDE_RS17490	COG0583	DNA-binding transcription factor activity
ALIDE_RS17505	COG0183	Belongs to the thiolase family
ALIDE_RS17510	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
ALIDE_RS17520	COG1414	Transcriptional regulator
ALIDE_RS17540	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
ALIDE_RS17550	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS17555	COG1609	Transcriptional regulator
ALIDE_RS17560	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS17620	COG3179	chitinase
ALIDE_RS17915	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
ALIDE_RS17920	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ALIDE_RS17945	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
ALIDE_RS17950	COG0543	2 iron, 2 sulfur cluster binding
ALIDE_RS17950	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ALIDE_RS17960	COG0642	Histidine kinase
ALIDE_RS17970	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
ALIDE_RS17980	COG1178	ABC-type Fe3 transport system permease component
ALIDE_RS17985	COG3842	ATPase activity
ALIDE_RS18000	COG0540	Belongs to the ATCase OTCase family
ALIDE_RS18005	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
ALIDE_RS18010	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
ALIDE_RS18015	COG1678	Uncharacterized ACR, COG1678
ALIDE_RS18020	COG2198	Histidine kinase
ALIDE_RS18020	COG0643	Histidine kinase
ALIDE_RS18020	COG0784	Response regulator, receiver
ALIDE_RS18025	COG0840	transmembrane signaling receptor activity
ALIDE_RS18050	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
ALIDE_RS18055	COG0138	bifunctional purine biosynthesis protein purh
ALIDE_RS18060	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
ALIDE_RS18065	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
ALIDE_RS18070	COG1238	metal cluster binding
ALIDE_RS18080	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS18085	COG1473	amidohydrolase
ALIDE_RS18100	COG2205	protein histidine kinase activity
ALIDE_RS18110	COG0012	GTP binding
ALIDE_RS18115	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
ALIDE_RS18130	COG1024	Enoyl-CoA hydratase
ALIDE_RS18145	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
ALIDE_RS18150	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
ALIDE_RS18155	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
ALIDE_RS18180	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
ALIDE_RS18180	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
ALIDE_RS18195	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
ALIDE_RS18205	COG2264	protein methyltransferase activity
ALIDE_RS18210	COG0439	Biotin carboxylase
ALIDE_RS18215	COG0511	ligase activity, forming carbon-carbon bonds
ALIDE_RS18220	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
ALIDE_RS18230	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ALIDE_RS18240	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
ALIDE_RS18245	COG0312	modulator of DNA gyrase
ALIDE_RS18250	COG0772	Belongs to the SEDS family
ALIDE_RS18255	COG3150	esterase
ALIDE_RS18265	COG3474	cytochrome
ALIDE_RS18275	COG1595	DNA-templated transcription, initiation
ALIDE_RS18280	COG0557	exoribonuclease II activity
ALIDE_RS18290	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
ALIDE_RS18295	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
ALIDE_RS18315	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
ALIDE_RS18330	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
ALIDE_RS18335	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
ALIDE_RS18350	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS18385	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
ALIDE_RS18390	COG1181	Belongs to the D-alanine--D-alanine ligase family
ALIDE_RS18395	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
ALIDE_RS18400	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
ALIDE_RS18405	COG0772	Belongs to the SEDS family
ALIDE_RS18410	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
ALIDE_RS18415	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
ALIDE_RS18420	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
ALIDE_RS18425	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
ALIDE_RS18440	COG0275	rRNA processing
ALIDE_RS18445	COG2001	Belongs to the MraZ family
ALIDE_RS18450	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
ALIDE_RS18455	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
ALIDE_RS18470	COG0523	cobalamin synthesis protein
ALIDE_RS18485	COG2201	protein-glutamate methylesterase activity
ALIDE_RS18500	COG0745	RESPONSE REGULATOR receiver
ALIDE_RS18505	COG0745	RESPONSE REGULATOR receiver
ALIDE_RS18510	COG3437	response regulator, receiver
ALIDE_RS18510	COG0784	Response regulator, receiver
ALIDE_RS18520	COG5002	protein histidine kinase activity
ALIDE_RS18520	COG0784	Response regulator, receiver
ALIDE_RS18520	COG2205	protein histidine kinase activity
ALIDE_RS18530	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
ALIDE_RS18540	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
ALIDE_RS18550	COG1187	pseudouridine synthase activity
ALIDE_RS18570	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
ALIDE_RS18610	COG1846	Transcriptional regulator
ALIDE_RS18615	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS18620	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
ALIDE_RS18630	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS18655	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS18665	COG1024	Enoyl-CoA hydratase
ALIDE_RS18670	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS18675	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS18680	COG0183	Belongs to the thiolase family
ALIDE_RS18685	COG1024	Enoyl-CoA hydratase
ALIDE_RS18685	COG1250	3-hydroxyacyl-CoA dehydrogenase
ALIDE_RS18690	COG0583	DNA-binding transcription factor activity
ALIDE_RS18730	COG4372	Transposase
ALIDE_RS18750	COG0501	Belongs to the peptidase M48B family
ALIDE_RS18760	COG0418	dihydroorotase activity
ALIDE_RS18770	COG3189	MarR family transcriptional regulator
ALIDE_RS18775	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
ALIDE_RS18780	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
ALIDE_RS18785	COG0683	leucine binding
ALIDE_RS18795	COG0477	Major facilitator Superfamily
ALIDE_RS18840	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
ALIDE_RS18860	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ALIDE_RS18865	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS18905	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
ALIDE_RS18910	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS18915	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ALIDE_RS18925	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
ALIDE_RS18930	COG4251	negative regulation of phosphorylation
ALIDE_RS18930	COG3706	GGDEF domain
ALIDE_RS18930	COG2203	Gaf domain
ALIDE_RS18930	COG5001	Diguanylate cyclase
ALIDE_RS18935	COG0747	negative chemotaxis
ALIDE_RS18945	COG5001	Diguanylate cyclase
ALIDE_RS18945	COG5002	protein histidine kinase activity
ALIDE_RS18950	COG3012	SEC-C Motif Domain Protein
ALIDE_RS19000	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS19010	COG0183	Belongs to the thiolase family
ALIDE_RS19015	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
ALIDE_RS19020	COG0288	reversible hydration of carbon dioxide
ALIDE_RS19025	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS19030	COG0789	Transcriptional regulator
ALIDE_RS19060	COG0488	(ABC) transporter
ALIDE_RS19065	COG2201	protein-glutamate methylesterase activity
ALIDE_RS19070	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
ALIDE_RS19075	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
ALIDE_RS19085	COG2198	Histidine kinase
ALIDE_RS19085	COG0643	Histidine kinase
ALIDE_RS19090	COG2201	protein-glutamate methylesterase activity
ALIDE_RS19105	COG2197	response regulator
ALIDE_RS19115	COG1987	bacterial-type flagellum assembly
ALIDE_RS19120	COG1338	Plays a role in the flagellum-specific transport system
ALIDE_RS19130	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
ALIDE_RS19170	COG1766	The M ring may be actively involved in energy transduction
ALIDE_RS19175	COG1677	Flagellar hook-basal body complex protein FliE
ALIDE_RS19205	COG3754	Rhamnan synthesis protein F
ALIDE_RS19215	COG1360	Flagellar Motor Protein
ALIDE_RS19220	COG0745	RESPONSE REGULATOR receiver
ALIDE_RS19225	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
ALIDE_RS19250	COG1191	sigma factor activity
ALIDE_RS19265	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
ALIDE_RS19270	COG1815	bacterial-type flagellum-dependent cell motility
ALIDE_RS19275	COG1558	bacterial-type flagellum-dependent cell motility
ALIDE_RS19280	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
ALIDE_RS19285	COG1749	Flagellar hook protein flgE
ALIDE_RS19300	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
ALIDE_RS19305	COG1706	bacterial-type flagellum-dependent cell motility
ALIDE_RS19310	COG3951	Flagellar rod assembly protein muramidase FlgJ
ALIDE_RS19310	COG1705	Flagellar rod assembly protein muramidase FlgJ
ALIDE_RS19320	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
ALIDE_RS19330	COG2070	2-Nitropropane dioxygenase
ALIDE_RS19335	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ALIDE_RS19345	COG0697	spore germination
ALIDE_RS19350	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
ALIDE_RS19355	COG0384	phenazine biosynthesis protein PhzF
ALIDE_RS19360	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
ALIDE_RS19385	COG2203	Gaf domain
ALIDE_RS19385	COG3706	GGDEF domain
ALIDE_RS19385	COG4251	negative regulation of phosphorylation
ALIDE_RS19385	COG5001	Diguanylate cyclase
ALIDE_RS19410	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS19435	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
ALIDE_RS19440	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
ALIDE_RS19445	COG0183	Belongs to the thiolase family
ALIDE_RS19450	COG1024	Enoyl-CoA hydratase
ALIDE_RS19465	COG1022	Amp-dependent synthetase and ligase
ALIDE_RS19500	COG0679	Auxin Efflux Carrier
ALIDE_RS19505	COG0210	DNA helicase
ALIDE_RS19520	COG1262	PFAM Formylglycine-generating sulfatase enzyme
ALIDE_RS19540	COG0179	Fumarylacetoacetate (FAA) hydrolase
ALIDE_RS19550	COG1802	Transcriptional regulator
ALIDE_RS19560	COG0589	response to stress
ALIDE_RS19565	COG0343	queuine tRNA-ribosyltransferase activity
ALIDE_RS19595	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
ALIDE_RS19605	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS19605	COG0204	Acyl-transferase
ALIDE_RS19610	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
ALIDE_RS19635	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS19640	COG2072	flavoprotein involved in K transport
ALIDE_RS19665	COG2365	Tyrosine phosphatase family
ALIDE_RS19675	COG0203	ribosomal protein L17
ALIDE_RS19680	COG0202	RNA polymerase activity
ALIDE_RS19685	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
ALIDE_RS19690	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
ALIDE_RS19695	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
ALIDE_RS19700	COG0257	Belongs to the bacterial ribosomal protein bL36 family
ALIDE_RS19705	COG0201	protein transport
ALIDE_RS19710	COG0200	Binds to the 23S rRNA
ALIDE_RS19715	COG1841	ribosomal large subunit assembly
ALIDE_RS19720	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
ALIDE_RS19725	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
ALIDE_RS19730	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
ALIDE_RS19735	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
ALIDE_RS19740	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
ALIDE_RS19745	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
ALIDE_RS19750	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
ALIDE_RS19755	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
ALIDE_RS19760	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
ALIDE_RS19770	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
ALIDE_RS19785	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
ALIDE_RS19790	COG0783	Belongs to the Dps family
ALIDE_RS19800	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
ALIDE_RS19810	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
ALIDE_RS19830	COG0583	DNA-binding transcription factor activity
ALIDE_RS19835	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
ALIDE_RS19840	COG0134	indole-3-glycerol-phosphate synthase activity
ALIDE_RS19845	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
ALIDE_RS19850	COG0512	Glutamine amidotransferase of anthranilate synthase
ALIDE_RS19900	COG0629	single-stranded DNA binding
ALIDE_RS19905	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ALIDE_RS19905	COG0551	DNA topoisomerase type I activity
ALIDE_RS20030	COG2003	Belongs to the UPF0758 family
ALIDE_RS20150	COG0546	phosphoglycolate phosphatase activity
ALIDE_RS20160	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
ALIDE_RS20165	COG2967	ApaG domain
ALIDE_RS20180	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
ALIDE_RS20190	COG1309	transcriptional regulator
ALIDE_RS20205	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALIDE_RS20210	COG0842	Transport permease protein
ALIDE_RS20210	COG1129	ABC transporter
ALIDE_RS20215	COG0842	Transport permease protein
ALIDE_RS20225	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
ALIDE_RS20230	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
ALIDE_RS20235	COG1546	Belongs to the CinA family
ALIDE_RS20240	COG0840	transmembrane signaling receptor activity
ALIDE_RS20260	COG3012	SEC-C Motif Domain Protein
ALIDE_RS20260	COG3318	Belongs to the UPF0149 family
ALIDE_RS20285	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
ALIDE_RS20290	COG1137	ATPase activity
ALIDE_RS20300	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
ALIDE_RS20310	COG0018	arginyl-trna synthetase
ALIDE_RS20325	COG1301	dicarboxylic acid transport
ALIDE_RS20330	COG4191	Histidine kinase
ALIDE_RS20345	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
ALIDE_RS20350	COG1942	4-Oxalocrotonate Tautomerase
ALIDE_RS20360	COG0121	glutamine amidotransferase
ALIDE_RS20390	COG0189	ligase activity
ALIDE_RS20395	COG3135	benzoate transporter
ALIDE_RS20400	COG3158	transport of potassium into the cell
ALIDE_RS20410	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
ALIDE_RS20415	COG0569	domain protein
ALIDE_RS20420	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
ALIDE_RS20445	COG1466	dna polymerase III delta subunit
ALIDE_RS20455	COG0495	leucyl-tRNA aminoacylation
ALIDE_RS20460	COG0668	transmembrane transport
ALIDE_RS20465	COG1012	belongs to the aldehyde dehydrogenase family
ALIDE_RS20470	COG4772	TonB-dependent receptor
ALIDE_RS20475	COG3284	Transcriptional regulator
ALIDE_RS20485	COG2202	Pas domain
ALIDE_RS20485	COG2200	EAL domain
ALIDE_RS20485	COG2199	diguanylate cyclase activity
ALIDE_RS20500	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
ALIDE_RS20505	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
ALIDE_RS20510	COG0735	belongs to the Fur family
ALIDE_RS20515	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
ALIDE_RS20525	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
ALIDE_RS20530	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
ALIDE_RS20535	COG3118	belongs to the thioredoxin family
ALIDE_RS20545	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
ALIDE_RS20550	COG0009	L-threonylcarbamoyladenylate synthase
ALIDE_RS20625	COG2027	D-alanyl-D-alanine carboxypeptidase
ALIDE_RS20645	COG0598	Magnesium transport protein CorA
ALIDE_RS20665	COG0318	PFAM AMP-dependent synthetase and ligase
ALIDE_RS20670	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
ALIDE_RS20675	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
ALIDE_RS20690	COG0469	pyruvate kinase activity
ALIDE_RS20695	COG0006	proline dipeptidase activity
ALIDE_RS20700	COG1024	Enoyl-CoA hydratase
ALIDE_RS20725	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS20730	COG0583	DNA-binding transcription factor activity
ALIDE_RS20735	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
ALIDE_RS20740	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
ALIDE_RS20745	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
ALIDE_RS20755	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
ALIDE_RS20760	COG0583	DNA-binding transcription factor activity
ALIDE_RS20805	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS20820	COG0583	DNA-binding transcription factor activity
ALIDE_RS20830	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS20840	COG3148	PFAM DTW domain containing protein
ALIDE_RS20870	COG0625	glutathione transferase activity
ALIDE_RS20875	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS20885	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
ALIDE_RS20885	COG0551	DNA topoisomerase type I activity
ALIDE_RS20905	COG0604	alcohol dehydrogenase
ALIDE_RS20915	COG2030	dehydratase
ALIDE_RS20925	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ALIDE_RS20930	COG1846	Transcriptional regulator
ALIDE_RS20950	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS20955	COG0642	Histidine kinase
ALIDE_RS20970	COG1178	ABC-type Fe3 transport system permease component
ALIDE_RS20975	COG3842	ATPase activity
ALIDE_RS20980	COG1840	ABC-type Fe3 transport system, periplasmic component
ALIDE_RS20995	COG1012	belongs to the aldehyde dehydrogenase family
ALIDE_RS21005	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ALIDE_RS21010	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
ALIDE_RS21015	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ALIDE_RS21030	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
ALIDE_RS21035	COG2137	regulation of response to DNA damage stimulus
ALIDE_RS21045	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ALIDE_RS21050	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
ALIDE_RS21055	COG1862	Preprotein translocase
ALIDE_RS21065	COG1522	sequence-specific DNA binding
ALIDE_RS21070	COG2814	Major facilitator Superfamily
ALIDE_RS21075	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
ALIDE_RS21085	COG4566	intracellular signal transduction
ALIDE_RS21105	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
ALIDE_RS21110	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
ALIDE_RS21120	COG0625	glutathione transferase activity
ALIDE_RS21145	COG0861	Integral membrane protein TerC family
ALIDE_RS21155	COG0583	DNA-binding transcription factor activity
ALIDE_RS21170	COG1950	PFAM Membrane protein of
ALIDE_RS21175	COG4783	chaperone-mediated protein folding
ALIDE_RS21180	COG0315	cyclic pyranopterin monophosphate synthase activity
ALIDE_RS21190	COG1234	tRNA 3'-trailer cleavage
ALIDE_RS21195	COG1716	ATPase activity
ALIDE_RS21205	COG0861	Integral membrane protein TerC family
ALIDE_RS21210	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
ALIDE_RS21215	COG0045	succinate-CoA ligase (ADP-forming) activity
ALIDE_RS21220	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
ALIDE_RS21225	COG0758	DNA mediated transformation
ALIDE_RS21235	COG0242	peptide deformylase activity
ALIDE_RS21245	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
ALIDE_RS21260	COG0126	phosphoglycerate kinase activity
ALIDE_RS21275	COG0697	spore germination
ALIDE_RS21280	COG0284	orotidine-5'-phosphate decarboxylase activity
ALIDE_RS21310	COG2814	Major facilitator Superfamily
ALIDE_RS21315	COG0629	single-stranded DNA binding
ALIDE_RS21325	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS21345	COG1028	Short-chain dehydrogenase reductase Sdr
ALIDE_RS21355	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS21360	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS21365	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
ALIDE_RS21370	COG1620	l-lactate permease
ALIDE_RS21375	COG0482	sulfurtransferase activity
ALIDE_RS21380	COG0583	DNA-binding transcription factor activity
ALIDE_RS21385	COG2828	Protein conserved in bacteria
ALIDE_RS21395	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
ALIDE_RS21405	COG3976	FMN-binding domain protein
ALIDE_RS21405	COG1053	succinate dehydrogenase
ALIDE_RS21425	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ALIDE_RS21440	COG0439	Biotin carboxylase
ALIDE_RS21445	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
ALIDE_RS21465	COG4771	TonB-dependent receptor
ALIDE_RS21480	COG3181	Tripartite tricarboxylate transporter family receptor
ALIDE_RS21485	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS21495	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
ALIDE_RS21500	COG0307	riboflavin synthase, alpha
ALIDE_RS21505	COG1280	lysine exporter protein (LysE YggA)
ALIDE_RS21530	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
ALIDE_RS21535	COG3038	cytochrome b561
ALIDE_RS21555	COG1477	protein flavinylation
ALIDE_RS21570	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
ALIDE_RS21580	COG2070	2-Nitropropane dioxygenase
ALIDE_RS21590	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS21595	COG1414	Transcriptional regulator
ALIDE_RS21600	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS21610	COG1960	acyl-CoA dehydrogenase activity
ALIDE_RS21625	COG1804	L-carnitine dehydratase bile acid-inducible protein F
ALIDE_RS21655	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
ALIDE_RS21700	COG3706	GGDEF domain
ALIDE_RS21705	COG1802	Transcriptional regulator
ALIDE_RS21715	COG0559	Belongs to the binding-protein-dependent transport system permease family
ALIDE_RS21720	COG4177	L-phenylalanine transmembrane transporter activity
ALIDE_RS21760	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
ALIDE_RS21765	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
ALIDE_RS21770	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
ALIDE_RS21780	COG1385	rRNA (uridine-N3-)-methyltransferase activity
ALIDE_RS21795	COG1196	nuclear chromosome segregation
ALIDE_RS21820	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
ALIDE_RS21825	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
ALIDE_RS21830	COG2119	membrane
ALIDE_RS21835	COG0724	RNA recognition motif
ALIDE_RS21840	COG0724	RNA recognition motif
ALIDE_RS21845	COG0300	oxidoreductase activity
ALIDE_RS21855	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
ALIDE_RS21870	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
ALIDE_RS21885	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
ALIDE_RS21890	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
ALIDE_RS21895	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
ALIDE_RS21925	COG0601	transmembrane transport
ALIDE_RS21935	COG4172	Belongs to the ABC transporter superfamily
ALIDE_RS21940	COG1446	asparaginase
ALIDE_RS21960	COG0747	negative chemotaxis
ALIDE_RS21965	COG0706	membrane insertase activity
ALIDE_RS21970	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
ALIDE_RS21975	COG0594	ribonuclease P activity
ALIDE_RS21980	COG0230	Belongs to the bacterial ribosomal protein bL34 family
ALIDE_RS22030	COG0583	DNA-binding transcription factor activity
ALIDE_RS22170	COG0840	transmembrane signaling receptor activity
ALIDE_RS22270	COG0445	tRNA wobble uridine modification
ALIDE_RS22345	COG0277	FAD linked oxidase domain protein
ALIDE_RS22600	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
ALIDE_RS22895	COG0668	transmembrane transport
ALIDE_RS22930	COG2369	cell adhesion
ALIDE_RS23055	COG1196	nuclear chromosome segregation
ALIDE_RS23140	COG2202	Pas domain
ALIDE_RS23140	COG2205	protein histidine kinase activity
ALIDE_RS23150	COG1804	L-carnitine dehydratase bile acid-inducible protein F