locus	strain_id	interpro	function	go	others
ALIDE_RS00005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001957|IPR003593|IPR010921|IPR013159|IPR013317|IPR018312|IPR020591|IPR024633|IPR027417	AAA+ ATPase domain|Chromosomal replication control, initiator DnaA|Chromosomal replication control, initiator DnaA, conserved site|Chromosomal replication control, initiator DnaA-like|Chromosomal replication initiator protein DnaA|Chromosomal replication initiator, DnaA C-terminal|DnaA N-terminal domain|P-loop containing nucleoside triphosphate hydrolase|Trp repressor/replication initiator	GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275|GO:0043565	G3DSA:1.10.1750.10|G3DSA:3.40.50.300|MF_00377|PF00308|PF08299|PF11638|PR00051|PS01008|PTHR30050|PTHR30050:SF2|SM00382|SM00760|SSF48295|SSF52540|TIGR00362
ALIDE_RS00010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001001|IPR022634|IPR022635|IPR022637	DNA polymerase III, beta chain|DNA polymerase III, beta chain, C-terminal|DNA polymerase III, beta chain, N-terminal|DNA polymerase III, beta chain, central	GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360	G3DSA:3.10.150.10|PF00712|PF02767|PF02768|PIRSF000804|PTHR30478|SM00480|SSF55979|TIGR00663
ALIDE_RS00015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000565|IPR001241|IPR002288|IPR003594|IPR006171|IPR011557|IPR013506|IPR013759|IPR013760|IPR014721|IPR018522|IPR020568	DNA gyrase B subunit, C-terminal|DNA gyrase, subunit B|DNA topoisomerase, type IIA|DNA topoisomerase, type IIA, central domain|DNA topoisomerase, type IIA, conserved site|DNA topoisomerase, type IIA, subunit B|DNA topoisomerase, type IIA, subunit B, domain 2|DNA topoisomerase, type IIA-like domain|Histidine kinase-like ATPase, C-terminal domain|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Toprim domain	GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265	G3DSA:3.30.230.10|G3DSA:3.30.565.10|G3DSA:3.40.50.670|MF_01898|PF00204|PF00986|PF01751|PF02518|PR00418|PR01159|PS00177|PTHR10169|SM00387|SM00433|SSF54211|SSF55874|SSF56719|TIGR01059
ALIDE_RS00020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005358	Putative zinc- or iron-chelating domain containing protein		PF03692
ALIDE_RS00025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF577|SSF89796
ALIDE_RS00030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|PTHR11941:SF86|SSF52096
ALIDE_RS00035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30579|PTHR30579:SF4|SSF46785|SSF53850
ALIDE_RS00040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS00045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010839	Protein of unknown function DUF1446		PF07287|PTHR13943|PTHR13943:SF48
ALIDE_RS00050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain|Rudiment single hybrid motif|Single hybrid motif	GO:0003824|GO:0005524	G3DSA:2.40.50.100|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF00364|PF02785|PF02786|PS00866|PS00867|PTHR18866|SM00878|SM01209|SSF51230|SSF51246|SSF52440|SSF56059
ALIDE_RS00055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|PTHR10909|PTHR10909:SF227|SSF47203|SSF56645
ALIDE_RS00060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000022|IPR029045	Carboxyl transferase|ClpP/crotonase-like domain		G3DSA:3.90.226.10|PF01039|PTHR22855|PTHR22855:SF29|SSF52096
ALIDE_RS00065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001792|IPR017968|IPR020456	Acylphosphatase|Acylphosphatase, conserved site|Acylphosphatase-like domain	GO:0003998	G3DSA:3.30.70.100|PF00708|PR00112|PS00151|PTHR10029|SSF54975
ALIDE_RS00070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site		G3DSA:3.30.70.20|PF14697|PS00198|SSF54862
ALIDE_RS00075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001342|IPR005106|IPR016040|IPR019811	Aspartate/homoserine dehydrogenase, NAD-binding|Homoserine dehydrogenase, catalytic|Homoserine dehydrogenase, conserved site|NAD(P)-binding domain	GO:0006520|GO:0016491|GO:0050661|GO:0055114	G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF00742|PF03447|PS01042|PTHR21499|PTHR21499:SF2|SSF51735|SSF55347
ALIDE_RS00080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006555|IPR010614|IPR011545|IPR014001|IPR027417	ATP-dependent helicase, C-terminal|DEAD/DEAH box helicase domain|DEAD2|Helicase superfamily 1/2, ATP-binding domain|P-loop containing nucleoside triphosphate hydrolase	GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006139|GO:0008026|GO:0016818	G3DSA:3.40.50.300|PF00270|PF06733|PF13307|PTHR11472|PTHR11472:SF32|SM00487|SM00491|SSF52540
ALIDE_RS00085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012337|IPR013520	Exonuclease, RNase T/DNA polymerase III|Ribonuclease H-like domain	GO:0003676	G3DSA:3.30.420.10|PF00929|PTHR30231|SM00479|SSF53098
ALIDE_RS00090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000064	Endopeptidase, NLPC/P60 domain		G3DSA:3.90.1720.10|PF00877|PTHR21666|SSF54001
ALIDE_RS00095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006218|IPR006219|IPR013785	Aldolase-type TIM barrel|DAHP synthetase I/KDSA|DHAP synthase, class 1	GO:0003824|GO:0003849|GO:0009058|GO:0009073	G3DSA:3.20.20.70|PF00793|PIRSF001361|PTHR21225|SSF51569|TIGR00034
ALIDE_RS00100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001610|IPR001633|IPR003018|IPR013767|IPR029016|IPR029787	EAL domain|GAF domain|GAF domain-like|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS fold	GO:0005515|GO:0006355	G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.450.40|G3DSA:3.30.70.270|PF00563|PF00989|PF00990|PF13185|PF13188|PTHR33121|PTHR33121:SF13|SM00052|SM00065|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55781|SSF55785|TIGR00229|TIGR00254
ALIDE_RS00105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF4|SM00346|SSF46785|SSF55781
ALIDE_RS00110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain	GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|PF00441|PF02771|PTHR10909|PTHR10909:SF302|SSF47203|SSF56645
ALIDE_RS00120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF229|SSF47203|SSF56645
ALIDE_RS00125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003781|IPR013816|IPR016040|IPR016102|IPR032875	ATP-grasp fold, subdomain 2|CoA-binding|NAD(P)-binding domain|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain	GO:0005524|GO:0048037	G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|PTHR33303|PTHR33303:SF3|SM00881|SSF51735|SSF52210|SSF56059
ALIDE_RS00135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|PTHR11941:SF85|SSF52096
ALIDE_RS00140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|SM00346|SSF46785|SSF55781
ALIDE_RS00145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011250|IPR018550	Lipid A 3-O-deacylase-related|Outer membrane protein/outer membrane enzyme PagP,  beta-barrel	GO:0016021	G3DSA:2.40.160.20|PF09411
ALIDE_RS00150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012899	LTXXQ motif family protein	GO:0042597	PF07813
ALIDE_RS00155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007476	Putative exonuclease, RdgC	GO:0006310	PF04381|PTHR38103|PTHR38103:SF1
ALIDE_RS00160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011415|IPR011642	Nucleoside transporter/FeoB GTPase, Gate domain|Predicted bifunctional spore maturation protein, fused SpmA/SpmB		PF07670|PIRSF036542|PTHR35793|PTHR35793:SF2
ALIDE_RS00165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021724	Protein of unknown function DUF3297		PF11730
ALIDE_RS00170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013529|IPR013781|IPR017853	Glycoside hydrolase superfamily|Glycoside hydrolase, catalytic domain|Glycoside hydrolase, family 42, N-terminal	GO:0004565|GO:0005975|GO:0009341	G3DSA:3.20.20.80|PF02449|SSF51445
ALIDE_RS00175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000551|IPR009061|IPR011789|IPR015358	Cu(I)-responsive transcriptional regulator|MerR-type HTH domain|Putative DNA-binding domain|Transcription regulator MerR, DNA binding	GO:0003677|GO:0003700|GO:0005507|GO:0006355|GO:0045893	G3DSA:1.10.1660.10|PF00376|PF09278|PR00040|PS00552|PTHR30204|PTHR30204:SF16|SM00422|SSF46955|TIGR02044
ALIDE_RS00180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006121	Heavy metal-associated domain, HMA	GO:0030001|GO:0046872	G3DSA:3.30.70.100|PF00403|SSF55008
ALIDE_RS00185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR006121|IPR008250|IPR017969|IPR018303|IPR023214|IPR023299|IPR027256	HAD-like domain|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site|P-type ATPase|P-type ATPase, A  domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB	GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872	G3DSA:2.70.150.10|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PR00943|PS00154|PS01047|PTHR24093|PTHR24093:SF332|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01525
ALIDE_RS00190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003660|IPR004089|IPR004090|IPR024478	4HB MCP domain|Chemotaxis methyl-accepting receptor|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain	GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021	G3DSA:1.10.287.950|PF00015|PF00672|PF12729|PR00260|PTHR32089|PTHR32089:SF63|SM00283|SM00304|SSF58104
ALIDE_RS00195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR004763|IPR027463	Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0006812|GO:0008324|GO:0016020|GO:0016021	G3DSA:1.10.3850.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF24|SSF82693|SSF82714|SSF82866|TIGR00914
ALIDE_RS00200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR032317	RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF16576|PTHR30097|PTHR30097:SF4|SSF111369|TIGR01730
ALIDE_RS00205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423	Outer membrane efflux protein	GO:0005215|GO:0006810	G3DSA:1.20.1600.10|PF02321|PTHR30203|SSF56954
ALIDE_RS00210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991|IPR016032	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF518|SM00448|SM00862|SSF46894|SSF52172
ALIDE_RS00215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR004358|IPR013727	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|PTHR24423|PTHR24423:SF474|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS00220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001155|IPR013785	Aldolase-type TIM barrel|NADH:flavin oxidoreductase/NADH oxidase, N-terminal	GO:0003824|GO:0010181|GO:0016491|GO:0055114	G3DSA:3.20.20.70|PF00724|PTHR22893|PTHR22893:SF14|SSF51395
ALIDE_RS00225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR004046|IPR010987|IPR012336	Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold	GO:0005515	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF13417|PTHR11260|PTHR11260:SF154|SSF47616|SSF52833
ALIDE_RS00230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PTHR36931
ALIDE_RS00235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005025|IPR029039	Flavoprotein-like domain|NADPH-dependent FMN reductase-like	GO:0016491	G3DSA:3.40.50.360|PF03358|PTHR30543|PTHR30543:SF6|SSF52218
ALIDE_RS00240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002218|IPR004416|IPR020595|IPR023753|IPR026904	FAD/NAD(P)-binding domain|GidA associated domain 3|MnmG-related, conserved site|tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG|tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related	GO:0002098|GO:0008033|GO:0016491|GO:0050660|GO:0055114	G3DSA:3.50.50.60|MF_00129|PF01134|PF13932|PS01280|PS01281|PTHR11806|PTHR11806:SF0|SM01228|SSF51905|TIGR00136
ALIDE_RS00245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:1.10.150.20
ALIDE_RS00250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003682|IPR029063	S-adenosyl-L-methionine-dependent methyltransferase|rRNA small subunit methyltransferase G	GO:0005737|GO:0006364|GO:0008649	G3DSA:3.40.50.150|MF_00074|PF02527|PIRSF003078|PTHR31760|PTHR31760:SF0|SSF53335|TIGR00138
ALIDE_RS00255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001123	Lysine-type exporter protein (LYSE/YGGA)	GO:0006865|GO:0016020	PF01810|PIRSF006324|PTHR30086
ALIDE_RS00260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000392|IPR025669|IPR027417	AAA domain|Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016491|GO:0055114	G3DSA:3.40.50.300|PF13614|PR00091|PTHR13696|PTHR13696:SF52|SSF52540
ALIDE_RS00265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010662|IPR029058	Alpha/Beta hydrolase fold|Putative hydrolase RBBP9/YdeN	GO:0016787	G3DSA:3.40.50.1820|PF06821|SSF53474
ALIDE_RS00270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003115|IPR004437	ParB/RepB/Spo0J partition protein family|ParB/Sulfiredoxin	GO:0003677	G3DSA:3.90.1530.10|PF02195|PTHR33375|PTHR33375:SF1|SM00470|SSF109709|SSF110849|TIGR00180
ALIDE_RS00275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR026170|IPR029063	FAM173 family|S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PTHR13610|PTHR13610:SF9|SSF53335
ALIDE_RS00280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002477	Peptidoglycan binding-like		G3DSA:1.10.101.10|PF01471|SSF47090
ALIDE_RS00285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003313|IPR009057|IPR011051|IPR014710|IPR018060|IPR018062	AraC-type arabinose-binding/dimerisation domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeodomain-like|RmlC-like cupin domain|RmlC-like jelly roll fold	GO:0003677|GO:0003700|GO:0006355|GO:0043565	G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF02311|PF12833|PS00041|PTHR11019|PTHR11019:SF99|SM00342|SSF46689|SSF51182
ALIDE_RS00290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23505|PTHR23505:SF8|SSF103473
ALIDE_RS00295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006685|IPR010920|IPR011014|IPR011066	LSM domain|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, transmembrane-2	GO:0016020|GO:0055085	G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|PTHR30221|PTHR30221:SF3|SSF50182|SSF82689|SSF82861
ALIDE_RS00300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004113|IPR006094|IPR016164|IPR016166|IPR016167|IPR016169|IPR016171	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD linked oxidase, N-terminal|FAD-binding, type 2|FAD-binding, type 2, subdomain 1|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2	GO:0003824|GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:1.10.45.10|G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF01565|PF02913|PTHR11748|PTHR11748:SF97|SSF55103|SSF56176
ALIDE_RS00310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006522	Phage virion morphogensis protein		PF05069
ALIDE_RS00315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006528	Phage head morphogenesis domain		PF04233
ALIDE_RS00320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009279	Protein of unknown function DUF935		PF06074
ALIDE_RS00335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982	Lambda repressor-like, DNA-binding domain	GO:0003677	G3DSA:1.10.260.40
ALIDE_RS00380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012263|IPR012327|IPR023095|IPR029063	Adenine modification methylase, M.EcoRV-type|Adenine-specific methyltransferase, domain 2|D12 class N6 adenine-specific DNA methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase	GO:0009007|GO:0032775	G3DSA:1.10.1020.10|G3DSA:3.40.50.150|PF02086|PIRSF000398|PR00505|PTHR30481|PTHR30481:SF4|SSF53335
ALIDE_RS00390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016030|IPR029499	ATP:cob(I)alamin adenosyltransferase, PduO-type|Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like		G3DSA:1.20.1200.10|PD007457|PF01923|PTHR12213|SSF89028|TIGR00636
ALIDE_RS00395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003736|IPR006683|IPR029069	HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR12418|PTHR12418:SF33|SSF54637|TIGR00369
ALIDE_RS00400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003702|IPR017821|IPR026888	Acetyl-CoA hydrolase/transferase|Acetyl-CoA hydrolase/transferase C-terminal domain|Succinate CoA transferase	GO:0003824|GO:0006084|GO:0016740	G3DSA:3.40.1080.10|G3DSA:3.40.810.20|PF02550|PF13336|PTHR21432|PTHR21432:SF10|SSF100950|TIGR03458
ALIDE_RS00405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027392	Transcription factor zinc-finger		PF13453
ALIDE_RS00410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30126|SSF46785|SSF53850
ALIDE_RS00415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PTHR24321|PTHR24321:SF6|SSF51735
ALIDE_RS00425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00081|PTHR24322|SSF51735
ALIDE_RS00430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003779|IPR029032	AhpD-like|Carboxymuconolactone decarboxylase-like	GO:0051920|GO:0055114	G3DSA:1.20.1290.10|PF02627|PTHR34846|PTHR34846:SF2|SSF69118
ALIDE_RS00435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006042|IPR006043	Xanthine/uracil permease|Xanthine/uracil/vitamin C permease	GO:0005215|GO:0006810|GO:0016020|GO:0055085	PF00860|PS01116|PTHR11119|PTHR11119:SF49|TIGR00801
ALIDE_RS00440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006342|IPR029063	Methyltransferase FkbM|S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF05050|PTHR36973|PTHR36973:SF1|SSF53335|TIGR01444
ALIDE_RS00445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002938|IPR010971|IPR023753	FAD-binding domain|FAD/NAD(P)-binding domain|Ubiquinone biosynthesis hydroxylase UbiH/COQ6	GO:0006744|GO:0016491|GO:0016709|GO:0050660|GO:0055114|GO:0071949	G3DSA:3.50.50.60|PF01494|PR00420|PTHR13789|PTHR13789:SF5|SSF51905|TIGR01988
ALIDE_RS00450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR005914|IPR020845|IPR032387	AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetoacetyl-CoA synthase|Acetyl-coenzyme A synthetase, N-terminal domain	GO:0003824|GO:0006629|GO:0008152|GO:0030729	G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF16177|PS00455|PTHR24095|PTHR24095:SF46|SSF56801|TIGR01217
ALIDE_RS00455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|PTHR30346:SF0|SSF46785|SSF53850
ALIDE_RS00460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS00465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF02770|PF02771|PS00072|PTHR10909|PTHR10909:SF242|SSF56645
ALIDE_RS00470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain	GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|PF00441|PF02771|PTHR10909|PTHR10909:SF145|SSF47203|SSF56645
ALIDE_RS00475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|SSF52096
ALIDE_RS00480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000462|IPR004533	CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--serine O-phosphatidyltransferase	GO:0008654|GO:0016020|GO:0016780	PF01066|PS00379|PTHR15362|PTHR15362:SF2|TIGR00473
ALIDE_RS00485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR010105|IPR012910|IPR030149	TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain|TonB-dependent siderophore receptor|TonB-dependent siderophore receptor FcuA/FatA	GO:0004872|GO:0005506|GO:0006810|GO:0009279|GO:0015891|GO:0016020|GO:0016021	G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PTHR32552|PTHR32552:SF14|SSF56935|TIGR01783
ALIDE_RS00490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005625	PepSY-associated TM protein		PF03929|PTHR34219|PTHR34219:SF3
ALIDE_RS00500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005526|IPR007874|IPR013033|IPR016098	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal|Septum formation inhibitor MinC|Septum formation inhibitor MinC, C-terminal|Septum formation inhibitor MinC, N-terminal	GO:0000902|GO:0000917|GO:0051302|GO:0051726	G3DSA:2.160.20.70|MF_00267|PF03775|PF05209|PTHR34108|PTHR34108:SF1|SSF63848|TIGR01222
ALIDE_RS00505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002586|IPR010223|IPR025501|IPR027417	ATP binding protein MinD|ATP binding protein MinD, bacterial-type|CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase	GO:0000918|GO:0016887	G3DSA:3.40.50.300|PF01656|PIRSF003092|PTHR13696|PTHR13696:SF1|SSF52540|TIGR01968
ALIDE_RS00510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005527	Septum formation topological specificity factor MinE	GO:0032955|GO:0051301	G3DSA:3.30.1070.10|MF_00262|PF03776|PTHR33404|SSF55229|TIGR01215
ALIDE_RS00515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30537|PTHR30537:SF5|SSF46785|SSF53850
ALIDE_RS00520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001354|IPR013341|IPR013342|IPR018110|IPR029017|IPR029065	Enolase C-terminal domain-like|Enolase N-terminal domain-like|Mandelate racemase/muconate lactonizing enzyme, C-terminal|Mandelate racemase/muconate lactonizing enzyme, N-terminal domain|Mandelate racemase/muconate lactonizing enzyme, conserved site|Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase	GO:0003824|GO:0008152|GO:0009063	G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF02746|PF13378|PS00908|PTHR13794|PTHR13794:SF4|SM00922|SSF51604|SSF54826
ALIDE_RS00530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002563|IPR012349	FMN-binding split barrel|Flavin reductase like domain	GO:0010181|GO:0016491|GO:0055114	G3DSA:2.30.110.10|PF01613|PTHR30466|PTHR30466:SF1|SM00903|SSF50475
ALIDE_RS00535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR000639|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like	GO:0003824	G3DSA:3.40.50.1820|PF12697|PR00111|PR00412|PTHR10992|SSF53474
ALIDE_RS00540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR015893|IPR023772	DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal	GO:0003677	G3DSA:1.10.357.10|PF00440|PR00455|PS01081|PTHR30055|SSF46689|SSF48498
ALIDE_RS00545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006015|IPR006016|IPR014729	Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA	GO:0006950	G3DSA:3.40.50.620|PF00582|PR01438|PTHR31964|SSF52402
ALIDE_RS00550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004843|IPR029052	Calcineurin-like phosphoesterase domain, apaH type|Metallo-dependent phosphatase-like	GO:0016787	G3DSA:3.60.21.10|PF00149|PTHR37844|SSF56300
ALIDE_RS00555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30118|PTHR30118:SF8|SSF46785|SSF53850
ALIDE_RS00565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008209|IPR008210|IPR013035|IPR018091	Phosphoenolpyruvate carboxykinase, C-terminal|Phosphoenolpyruvate carboxykinase, GTP-utilising|Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site|Phosphoenolpyruvate carboxykinase, N-terminal	GO:0004611|GO:0004613|GO:0005525|GO:0006094|GO:0017076	G3DSA:3.40.449.10|G3DSA:3.90.228.20|MF_00452|PF00821|PIRSF001348|PS00505|PTHR11561|SSF53795|SSF68923
ALIDE_RS00570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001926|IPR002912|IPR005789	ACT domain|Threonine dehydratase, catabolic|Tryptophan synthase beta subunit-like PLP-dependent enzyme	GO:0004794|GO:0006567|GO:0008152|GO:0016597	G3DSA:3.30.70.260|G3DSA:3.40.50.1100|PF00291|PF13291|PTHR10314|PTHR10314:SF17|SSF53686|SSF55021|TIGR01127
ALIDE_RS00575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0055114	G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PS00073|PTHR10909|PTHR10909:SF289|SSF47203|SSF56645
ALIDE_RS00580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR004014|IPR006068|IPR006415|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299	Cation-transporting P-type ATPase, C-terminal|Cation-transporting P-type ATPase, N-terminal|HAD-like domain|P-type ATPase|P-type ATPase,  transmembrane domain|P-type ATPase, A  domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IIIB	GO:0000166|GO:0015444|GO:0015693|GO:0016021|GO:0046872	G3DSA:1.20.1110.10|G3DSA:2.70.150.10|G3DSA:3.40.1110.10|PF00122|PF00689|PF00690|PF00702|PR01836|PS00154|PTHR24093|PTHR24093:SF356|SM00831|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01524
ALIDE_RS00585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003726	Homocysteine-binding domain		G3DSA:3.20.20.330|PF02574|PTHR21091|PTHR21091:SF112|SSF82282
ALIDE_RS00590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|PTHR30346:SF0|SSF46785|SSF53850
ALIDE_RS00595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF241|SSF47203|SSF56645
ALIDE_RS00600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011051|IPR013096|IPR014710	Cupin 2, conserved barrel|RmlC-like cupin domain|RmlC-like jelly roll fold		G3DSA:2.60.120.10|PF07883|SSF51182
ALIDE_RS00605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001650|IPR002121|IPR004589|IPR006293|IPR010997|IPR011545|IPR011991|IPR014001|IPR018982|IPR027417|IPR032284	ATP-dependent DNA helicase RecQ, zinc-binding domain|DEAD/DEAH box helicase domain|DNA helicase, ATP-dependent, RecQ type|DNA helicase, ATP-dependent, RecQ type, bacterial|HRDC domain|HRDC-like|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|RQC domain|Winged helix-turn-helix DNA-binding domain	GO:0000166|GO:0003676|GO:0003824|GO:0004003|GO:0005524|GO:0005622|GO:0006260|GO:0006281|GO:0006310|GO:0008026|GO:0009432|GO:0043140|GO:0044237	G3DSA:1.10.10.10|G3DSA:1.10.150.80|G3DSA:3.40.50.300|PF00270|PF00271|PF00570|PF09382|PF16124|PTHR13710|PTHR13710:SF81|SM00341|SM00487|SM00490|SM00956|SSF47819|SSF52540|TIGR00614|TIGR01389
ALIDE_RS00615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007197|IPR012840|IPR013785	Aldolase-type TIM barrel|Anaerobic ribonucleoside-triphosphate reductase activating protein|Radical SAM	GO:0003824|GO:0051536	G3DSA:3.20.20.70|PF04055|PF13353|PTHR30352|PTHR30352:SF4|SSF102114|TIGR02495
ALIDE_RS00620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012833	Ribonucleoside-triphosphate reductase, anaerobic	GO:0006260|GO:0008998|GO:0016491|GO:0055114	PF13597
ALIDE_RS00625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005144|IPR012833	ATP-cone domain|Ribonucleoside-triphosphate reductase, anaerobic	GO:0006260|GO:0008998|GO:0016491|GO:0055114	G3DSA:3.20.70.20|PF03477|PF13597|PTHR21075|SSF51998|TIGR02487
ALIDE_RS00630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001610|IPR001633|IPR013656|IPR029787|IPR033425	EAL domain|GGDEF domain|Membrane-associated sensor domain MASE3|Nucleotide cyclase|PAC motif|PAS domain|PAS fold-4		G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF08448|PF13426|PF17159|PTHR33121|PTHR33121:SF13|SM00052|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254
ALIDE_RS00635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012312	Haemerythrin-like		G3DSA:1.20.120.520|PF01814
ALIDE_RS00640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000883|IPR023616	Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I domain	GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114	PF00115|SSF81442
ALIDE_RS00645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002078|IPR002197|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417|IPR029016	AAA+ ATPase domain|DNA binding HTH domain,  Fis-type|GAF domain-like|Homeodomain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site	GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF02954|PS00675|PS00676|PS00688|PTHR32071|PTHR32071:SF35|SM00382|SSF46689|SSF52540|SSF55781
ALIDE_RS00650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011038|IPR014602|IPR014878	Calycin-like|Domain of unknown function DUF1794|Uncharacterised conserved protein UCP036226		PF08768|PIRSF036226|SSF50814
ALIDE_RS00655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004644|IPR005130|IPR005131|IPR029009	Allosteric substrate binding domain|Iron-sulphur-dependent L-serine dehydratase single chain form|Serine dehydratase beta chain|Serine dehydratase-like, alpha subunit	GO:0003941|GO:0006094|GO:0051539	G3DSA:3.30.1330.90|PF03313|PF03315|PTHR30182|PTHR30182:SF1|SSF143548|TIGR00720
ALIDE_RS00660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS00670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003736|IPR006683|IPR029069	HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR12418|SSF54637|TIGR00369
ALIDE_RS00680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS00685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS00690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PS00073|PTHR10909|PTHR10909:SF190|SSF47203|SSF56645
ALIDE_RS00695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|PTHR24096:SF106|SSF56801
ALIDE_RS00700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020613|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, conserved site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00737|PTHR18919|PTHR18919:SF71|SSF53901|TIGR01930
ALIDE_RS00705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF00106|PR00081|PS00061|PTHR24322|PTHR24322:SF356|SM00822|SSF51735
ALIDE_RS00710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS00715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00081|PTHR24322|PTHR24322:SF427|SSF51735
ALIDE_RS00720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF4|SM00346|SSF46785|SSF55781
ALIDE_RS00725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF545|SSF89796
ALIDE_RS00730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS00735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002878|IPR012340|IPR022002	Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold		PF01796|PF12172|PTHR34075|PTHR34075:SF2|SSF50249
ALIDE_RS00740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF02803|PIRSF000429|PTHR18919|PTHR18919:SF108|SSF53901
ALIDE_RS00745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PS00073|PTHR10909|PTHR10909:SF190|SSF47203|SSF56645
ALIDE_RS00750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR025110	AMP-binding enzyme C-terminal domain|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PTHR24096|PTHR24096:SF106|SSF56801
ALIDE_RS00755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PF13452|PTHR13078|SSF54637
ALIDE_RS00760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR13078|PTHR13078:SF55|SM00822|SSF51735
ALIDE_RS00765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS00770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF10|SM00346|SSF46785|SSF55781
ALIDE_RS00775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23512|PTHR23512:SF1|SSF103473
ALIDE_RS00780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005000|IPR011206|IPR015813	Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824	G3DSA:3.20.20.60|PF03328|PIRSF015582|PTHR32308|PTHR32308:SF0|SSF51621
ALIDE_RS00790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002559|IPR008490	Transposase InsH, N-terminal|Transposase, IS4-like	GO:0003677|GO:0004803|GO:0006313	PF01609|PF05598
ALIDE_RS00795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS00800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS00805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS00810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|PTHR10909|PTHR10909:SF285|SSF47203|SSF56645
ALIDE_RS00815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029069	HotDog domain		G3DSA:3.10.129.10|PF13452|PTHR28152|PTHR28152:SF1|SSF54637
ALIDE_RS00820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR13078|PTHR13078:SF55|SM00822|SSF51735
ALIDE_RS00825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PF13452|PTHR13078|PTHR13078:SF55|SSF54637
ALIDE_RS00830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR018376|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|SSF52096
ALIDE_RS00835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003702|IPR026888	Acetyl-CoA hydrolase/transferase|Acetyl-CoA hydrolase/transferase C-terminal domain	GO:0003824|GO:0006084	G3DSA:3.40.1080.10|G3DSA:3.40.810.20|PF02550|PF13336|PTHR21432|PTHR21432:SF18|SSF100950
ALIDE_RS00840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PTHR18919|PTHR18919:SF69|SSF53901|TIGR01930
ALIDE_RS00845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF5|SSF46785|SSF53850
ALIDE_RS00850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS00855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR011032|IPR013149|IPR013154|IPR016040|IPR020843	Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PTHR11695|PTHR11695:SF31|SM00829|SSF50129|SSF51735
ALIDE_RS00860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF26|SSF46785|SSF53850
ALIDE_RS00870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002933|IPR011650|IPR017439	Amidohydrolase|Peptidase M20|Peptidase M20, dimerisation domain	GO:0008152|GO:0016787	G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|PTHR11014|PTHR11014:SF63|SSF53187|SSF55031|TIGR01891
ALIDE_RS00880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS00890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS00900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002933|IPR011650|IPR017439	Amidohydrolase|Peptidase M20|Peptidase M20, dimerisation domain	GO:0008152|GO:0016787	G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|PTHR11014|PTHR11014:SF63|SSF53187|SSF55031|TIGR01891
ALIDE_RS00905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002878|IPR012340|IPR022002	Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold		G3DSA:2.20.28.40|PF01796|PF12172|PTHR34075|PTHR34075:SF2|SSF50249
ALIDE_RS00910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF02803|PIRSF000429|PTHR18919|PTHR18919:SF108|SSF53901
ALIDE_RS00915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PS00073|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS00920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003736|IPR006683|IPR029069	HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR12418|SSF54637|TIGR00369
ALIDE_RS00925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR029016	GAF domain-like|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF09339|PTHR30136|SM00346|SSF46785|SSF55781
ALIDE_RS00930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00081|PTHR24317|PTHR24317:SF5|SSF51735
ALIDE_RS00940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF204|SSF47203|SSF56645
ALIDE_RS00945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000022|IPR029045	Carboxyl transferase|ClpP/crotonase-like domain		G3DSA:3.90.226.10|PF01039|PTHR22855|PTHR22855:SF29|SSF52096
ALIDE_RS00950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PS00073|PTHR10909|PTHR10909:SF227|SSF47203|SSF56645
ALIDE_RS00955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR014748|IPR029045	ClpP/crotonase-like domain|Crontonase, C-terminal|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PTHR11941|PTHR11941:SF86|SSF52096
ALIDE_RS00960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR001882|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin-binding site|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain|Rudiment single hybrid motif|Single hybrid motif	GO:0003824|GO:0005524	G3DSA:2.40.50.100|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF00364|PF02785|PF02786|PS00188|PS00866|PS00867|PTHR18866|PTHR18866:SF102|SM00878|SSF51230|SSF51246|SSF52440|SSF56059
ALIDE_RS00965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010839	Protein of unknown function DUF1446		PF07287|PTHR13943|PTHR13943:SF48
ALIDE_RS00970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS00975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS00980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS00985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS00990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS00995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS01000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS01005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006095|IPR006096|IPR006097|IPR014362|IPR016040	Glutamate dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal|Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain|NAD(P)-binding domain	GO:0006520|GO:0016491|GO:0016639|GO:0055114	G3DSA:3.40.192.10|G3DSA:3.40.50.720|PF00208|PF02812|PIRSF000185|PR00082|PS00074|PTHR11606|SM00839|SSF51735|SSF53223
ALIDE_RS01010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007896	Chlorhexidine efflux transporter		PF05232|PTHR42641|PTHR42641:SF1
ALIDE_RS01020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009722|IPR011042	SdiA-regulated|Six-bladed beta-propeller, TolB-like		G3DSA:2.120.10.30|PF06977|SSF50956
ALIDE_RS01025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000489|IPR003759|IPR004223|IPR006158|IPR011005|IPR011822	Cobalamin (vitamin B12)-binding domain|Cobalamin (vitamin B12)-binding module, cap domain|Cobalamin-dependent methionine synthase|Dihydropteroate synthase-like|Pterin-binding domain|Vitamin B12-dependent methionine synthase, activation domain	GO:0005622|GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419|GO:0042558|GO:0044237|GO:0046872	G3DSA:1.10.1240.10|G3DSA:3.10.196.10|G3DSA:3.20.20.20|G3DSA:3.40.50.280|PF00809|PF02310|PF02607|PF02965|PIRSF000381|SM01018|SSF47644|SSF51717|SSF52242|SSF56507|TIGR02082
ALIDE_RS01030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003615|IPR028629	CRISPR-associated endonuclease Cas9|HNH nuclease	GO:0004519	MF_01480|PF13395|TIGR01865
ALIDE_RS01035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002729|IPR019855	CRISPR-associated protein Cas1|CRISPR-associated protein Cas1, NMENI subtype		MF_01470|PF01867|PTHR34353|TIGR00287|TIGR03639
ALIDE_RS01040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000640|IPR019199|IPR021127	CRISPR-associated endonuclease Cas2|Translation elongation factor EFG, V domain|Virulence-associated protein D / CRISPR associated protein Cas2	GO:0004521|GO:0043571	G3DSA:3.30.70.240|MF_01471|PF09827|SSF143430|TIGR01573
ALIDE_RS01050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005498	Type IV secretion system, VirB10 / TraB / TrbI		PF03743
ALIDE_RS01055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010258|IPR014142	Conjugal transfer, TrbG/VirB9/CagX|P-type conjugative transfer protein TrbG		PF03524|TIGR02775
ALIDE_RS01060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007430|IPR032710	Bacterial virulence protein VirB8|NTF2-like domain	GO:0016020	PF04335|SSF54427
ALIDE_RS01065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007688|IPR014150	Conjugal transfer, TrbL|Plasmid  conjugal transfer TrbL/VirB6	GO:0030255	PF04610|TIGR02783
ALIDE_RS01070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014147|IPR025415	Protein of unknown function DUF4141|Type IV conjugative transfer protein TrbJ		PF13605|TIGR02780
ALIDE_RS01075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR018145|IPR027417	AAA+ ATPase domain|CagE, TrbE, VirB component of type IV transporter system, central domain|P-loop containing nucleoside triphosphate hydrolase	GO:0005524	G3DSA:3.40.50.300|PF03135|SM00382|SSF52540
ALIDE_RS01080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007792|IPR016704	Conjugal transfer, TrbD|Type IV secretion system, VirB3 / TrbD / AvhB		PD012561|PF05101|PIRSF017854
ALIDE_RS01085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007039	Conjugal transfer TrbC/type IV secretion VirB2		PF04956
ALIDE_RS01090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001482|IPR014149|IPR027417	Conjugative transfer, TrbB|P-loop containing nucleoside triphosphate hydrolase|Type II secretion system protein E	GO:0000746|GO:0005524|GO:0005737|GO:0006810	G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PTHR30258|PTHR30258:SF12|SSF52540|TIGR02782
ALIDE_RS01095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010985|IPR013321	Arc-type ribbon-helix-helix|Ribbon-helix-helix	GO:0006355	G3DSA:1.10.1220.10|SSF47598
ALIDE_RS01100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003688|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Type IV secretion system protein TraG/VirD4	GO:0009291|GO:0016020	G3DSA:3.40.50.300|PF02534|PTHR37937|PTHR37937:SF1|SSF52540
ALIDE_RS01110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|SSF46785|SSF53850
ALIDE_RS01115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR004763|IPR027463	Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0006812|GO:0008324|GO:0016020|GO:0016021	G3DSA:1.10.3850.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF24|SSF82693|SSF82714|SSF82866|TIGR00914
ALIDE_RS01120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR032317	RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF16576|PTHR30097|PTHR30097:SF4|SSF111369|TIGR01730
ALIDE_RS01125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423	Outer membrane efflux protein	GO:0005215|GO:0006810	G3DSA:1.20.1600.10|PF02321|PTHR30203|PTHR30203:SF1|SSF56954
ALIDE_RS01130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR020487	Cobalt/zinc/cadmium resistance protein CzcI		PD074011
ALIDE_RS01135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025421	Protein of unknown function DUF4148		PF13663
ALIDE_RS01140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR006291|IPR011006|IPR011991|IPR016032	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcriptional regulatory protein PcoR, heavy metal response|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF575|SM00448|SM00862|SSF46894|SSF52172|TIGR01387
ALIDE_RS01145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003660|IPR003661|IPR004358|IPR006290	HAMP domain|Heavy metal sensor kinase|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0000160|GO:0004673|GO:0004871|GO:0007165|GO:0016020|GO:0016021|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PR00344|PTHR24423|PTHR24423:SF354|SM00304|SM00387|SM00388|SSF47384|SSF55874|TIGR01386
ALIDE_RS01155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR006121|IPR008250|IPR018303|IPR023214|IPR023299|IPR027256	HAD-like domain|Heavy metal-associated domain, HMA|P-type ATPase|P-type ATPase, A  domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB	GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872	G3DSA:2.70.150.10|G3DSA:3.30.70.100|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PR00941|PS00154|PTHR24093|PTHR24093:SF317|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01512|TIGR01525
ALIDE_RS01160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000551|IPR009061|IPR011791	Cd(II)/Pb(II)-responsive transcriptional regulator|MerR-type HTH domain|Putative DNA-binding domain	GO:0003677|GO:0003700|GO:0006355|GO:0045893|GO:0046872	G3DSA:1.10.1660.10|PF13411|PR00040|PTHR30204|PTHR30204:SF18|SM00422|SSF46955|TIGR02047
ALIDE_RS01165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021795	Protein of unknown function DUF3363		PF11843
ALIDE_RS01170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015927|IPR019533|IPR028360	Peptidase S24/S26, beta-ribbon domain|Peptidase S24/S26A/S26B/S26C|Peptidase S26		G3DSA:2.10.109.10|PF10502|SSF51306
ALIDE_RS01175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021263	Protein of unknown function DUF2840		PF11000
ALIDE_RS01180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010985|IPR013321	Arc-type ribbon-helix-helix|Ribbon-helix-helix	GO:0006355	G3DSA:1.10.1220.10|SSF47598
ALIDE_RS01185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002586|IPR027417	CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF01656|PIRSF009320|PTHR13696|PTHR13696:SF54|SSF52540
ALIDE_RS01190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018777	Replication initiator protein A		PF10134
ALIDE_RS01195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009061|IPR011991	Putative DNA-binding domain|Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|PF12728|SSF46955
ALIDE_RS01200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018754	Protein of unknown function DUF2285		PF10074
ALIDE_RS01205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021341	Protein of unknown function DUF2958		PF11171
ALIDE_RS01210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001387|IPR010982	Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain	GO:0003677|GO:0043565	G3DSA:1.10.260.40|PF01381|PTHR10245|PTHR10245:SF41|SM00530|SSF47413
ALIDE_RS01215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007948	Protein of unknown function DUF736		PF05284
ALIDE_RS01220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007358	Nucleoid-associated protein NdpA	GO:0009295	PF04245
ALIDE_RS01225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007685	RelA/SpoT	GO:0015969	G3DSA:3.30.460.10|PF04607|SM00954|SSF81301
ALIDE_RS01235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003115	ParB/Sulfiredoxin		G3DSA:3.90.1530.10|PF02195|PTHR33375|PTHR33375:SF2|SM00470|SSF109709|SSF110849
ALIDE_RS01240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR026325	Protein of unknown function DUF932		PF06067
ALIDE_RS01255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PTHR40275|PTHR40275:SF1
ALIDE_RS01260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009241|IPR014056	Addiction module killer protein, predicted|Toxin HigB-like		PF05973|PIRSF028744|PTHR41791|PTHR41791:SF1|TIGR02683
ALIDE_RS01265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR004107|IPR011010|IPR013762|IPR023109|IPR025166	DNA breaking-rejoining enzyme, catalytic core|Domain of unknown function DUF4102|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF13356|PF14659|PTHR30629|PTHR30629:SF2|SSF56349
ALIDE_RS01270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000623|IPR023000|IPR027417|IPR031322	P-loop containing nucleoside triphosphate hydrolase|Shikimate kinase, conserved site|Shikimate kinase/Threonine synthase-like 1|Shikimate kinase/gluconokinase		G3DSA:3.40.50.300|MF_00109|PF01202|PR01100|PS01128|PTHR21087|SSF52540
ALIDE_RS01275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017039	Virulence factor BrkB		PF03631|PIRSF035875|PTHR30213|PTHR30213:SF1
ALIDE_RS01280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008816	Glycine zipper 2TM domain	GO:0019867	PF05433|PTHR35603
ALIDE_RS01285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001433|IPR001709|IPR008333|IPR017938	Flavoprotein pyridine nucleotide cytochrome reductase|Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Riboflavin synthase-like beta-barrel	GO:0016491|GO:0055114	G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF00175|PF00970|PR00371|PTHR19370|PTHR19370:SF98|SSF52343|SSF63380
ALIDE_RS01290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000709|IPR028081|IPR028082	Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I	GO:0006865	G3DSA:3.40.50.2300|PF13458|PR00337|PTHR30483|PTHR30483:SF15|SSF53822
ALIDE_RS01295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF381
ALIDE_RS01300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PS00211|PTHR24220|SM00382|SSF52540
ALIDE_RS01305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000668|IPR002477|IPR023346|IPR029058	Alpha/Beta hydrolase fold|Lysozyme-like domain|Peptidase C1A, papain C-terminal|Peptidoglycan binding-like	GO:0006508|GO:0008234	G3DSA:1.10.101.10|G3DSA:3.30.20.10|G3DSA:3.40.50.1820|G3DSA:3.90.70.10|PF00112|SM00645|SSF47090|SSF53474|SSF53955|SSF54001
ALIDE_RS01310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531	TonB-dependent receptor, beta-barrel	GO:0004872|GO:0006810|GO:0016020	G3DSA:2.40.170.20
ALIDE_RS01315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011662|IPR032623	FecR, N-terminal|Secretin/TonB, short N-terminal domain	GO:0019867	PF16220|SM00965
ALIDE_RS01325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000523|IPR003593|IPR004482|IPR014721|IPR020568|IPR025158|IPR027417	AAA+ ATPase domain|Magnesium chelatase ChlI domain|Mg chelatase-related protein|Mg chelatase-related protein, C-terminal domain|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup		G3DSA:3.30.230.10|G3DSA:3.40.50.300|PF01078|PF13335|PF13541|PTHR32039|PTHR32039:SF7|SM00382|SSF52540|SSF54211|TIGR00368
ALIDE_RS01330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010239	Conserved hypothetical protein CHP02001		PF09694|TIGR02001
ALIDE_RS01335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002187|IPR002332|IPR011322|IPR015867|IPR017918	Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein P-II, urydylation site|Nitrogen regulatory protein PII|Nitrogen regulatory protein PII, conserved site|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	GO:0006808|GO:0030234	G3DSA:3.30.70.120|PF00543|PIRSF039144|PR00340|PS00496|PS00638|PTHR30115|PTHR30115:SF12|SM00938|SSF54913
ALIDE_RS01340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001905|IPR002229|IPR018047|IPR024041|IPR029020	Ammonium transporter|Ammonium transporter AmtB-like domain|Ammonium transporter, conserved site|Ammonium/urea transporter|Blood group Rhesus C/E/D polypeptide	GO:0008519|GO:0015696|GO:0016020|GO:0072488	G3DSA:1.10.3430.10|PF00909|PR00342|PS01219|PTHR11730|PTHR11730:SF17|SSF111352|TIGR00836
ALIDE_RS01345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30537|PTHR30537:SF26|SSF46785|SSF53850
ALIDE_RS01350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006115|IPR008927|IPR013328|IPR015815|IPR016040|IPR029154	3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0004616|GO:0016491|GO:0051287|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PTHR22981|SSF48179|SSF51735
ALIDE_RS01355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016161|IPR016162|IPR016163	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PTHR11699|SSF53720
ALIDE_RS01360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS01365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001279	Metallo-beta-lactamase		G3DSA:3.60.15.10|PF00753|PTHR23200|PTHR23200:SF40|SM00849|SSF56281
ALIDE_RS01370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|PTHR30483:SF17|SSF53822
ALIDE_RS01375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006115|IPR008927|IPR013328|IPR015815|IPR016040|IPR029154	3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0004616|GO:0016491|GO:0051287|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PTHR22981|SSF48179|SSF51735
ALIDE_RS01380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1		G3DSA:3.40.50.1820|PF12697|PTHR10992|PTHR10992:SF771|SSF53474
ALIDE_RS01390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007820|IPR017516	AbrB duplication|AbrB family	GO:0010468|GO:0016021	PF05145|PIRSF038991|PTHR38457|PTHR38457:SF1|TIGR03082
ALIDE_RS01395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS01400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS01405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS01410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003781|IPR013816|IPR016040|IPR016102|IPR032875	ATP-grasp fold, subdomain 2|CoA-binding|NAD(P)-binding domain|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain	GO:0005524|GO:0048037	G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|PTHR33303|PTHR33303:SF3|SM00881|SSF51735|SSF52210|SSF56059
ALIDE_RS01415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006094|IPR016164|IPR016166|IPR016169|IPR016171	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD linked oxidase, N-terminal|FAD-binding, type 2|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2	GO:0003824|GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:1.10.45.10|G3DSA:3.30.465.10|PF01565|PTHR11748|PTHR11748:SF1|SSF55103|SSF56176
ALIDE_RS01420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010699	Protein of unknown function DUF1275		PF06912|PTHR37314
ALIDE_RS01425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004017|IPR009051|IPR012257|IPR017896|IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|Cysteine-rich domain|Glycolate oxidase, iron-sulphur subunit	GO:0051536	G3DSA:1.10.1060.10|PF02754|PF12838|PIRSF000139|PS00198|PTHR32479|PTHR32479:SF2|SSF46548
ALIDE_RS01430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016103	ProQ/FinO domain		G3DSA:1.10.1710.10|PF04352|SM00945|SSF48657
ALIDE_RS01435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR22911|SSF103481
ALIDE_RS01440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23513|PTHR23513:SF8|SSF103473
ALIDE_RS01445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000821|IPR001608|IPR009006|IPR011079|IPR020622|IPR029066	Alanine racemase|Alanine racemase, C-terminal|Alanine racemase, N-terminal|Alanine racemase, pyridoxal-phosphate attachment site|Alanine racemase/group IV decarboxylase, C-terminal|PLP-binding barrel	GO:0003824|GO:0006522|GO:0008784	G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_01201|PF00842|PF01168|PR00992|PS00395|PTHR30511|PTHR30511:SF0|SM01005|SSF50621|SSF51419|TIGR00492
ALIDE_RS01450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004852|IPR009056|IPR026259	Cytochrome c-like domain|Di-c-type haem protein, MauG/cytochrome c peroxidase|Di-haem cytochrome c peroxidase	GO:0009055|GO:0016491|GO:0020037|GO:0055114	G3DSA:1.10.760.10|PF00034|PF03150|PIRSF000294|PTHR30600|PTHR30600:SF7|SSF46626
ALIDE_RS01455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR004046|IPR010987|IPR012336	Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold	GO:0005515	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF02798|PF14497|PTHR11260|PTHR11260:SF178|SSF47616|SSF52833
ALIDE_RS01460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR004504|IPR014721|IPR020568|IPR027417	AAA+ ATPase domain|DNA repair protein RadA|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup	GO:0003684|GO:0005524|GO:0006281	G3DSA:3.30.230.10|G3DSA:3.40.50.300|PF13481|PR01874|PTHR32472|SM00382|SSF52540|SSF54211|TIGR00416
ALIDE_RS01465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32
ALIDE_RS01470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000120|IPR023631	Amidase|Amidase signature domain	GO:0016884	G3DSA:3.90.1300.10|PF01425|PTHR11895|SSF75304
ALIDE_RS01480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001544|IPR005785|IPR018300	Aminotransferase class IV|Aminotransferase, class IV, conserved site|Branched-chain amino acid aminotransferase I	GO:0003824|GO:0004084|GO:0008152|GO:0009081	G3DSA:3.20.10.10|G3DSA:3.30.470.10|PF01063|PS00770|PTHR11825|PTHR11825:SF7|SSF56752|TIGR01122
ALIDE_RS01485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR019401	Zinc finger, CHCC-type		G3DSA:2.60.260.40|PF10276
ALIDE_RS01490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007016	O-antigen ligase-related		PF04932|PTHR37422|PTHR37422:SF2
ALIDE_RS01495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001296|IPR028098	Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain		G3DSA:3.40.50.2000|PF00534|PF13439|PTHR12526|SSF53756
ALIDE_RS01500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001173|IPR029044	Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases		G3DSA:3.90.550.10|PF00535|PTHR22916|SSF53448
ALIDE_RS01505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008441|IPR029044	Capsular polysaccharide synthesis|Nucleotide-diphospho-sugar transferases		PF05704|SSF53448
ALIDE_RS01510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004136|IPR013785	Aldolase-type TIM barrel|Nitronate monooxygenase	GO:0003824|GO:0018580|GO:0055114	G3DSA:3.20.20.70|PF03060|PTHR32332|PTHR32332:SF12|SSF51412
ALIDE_RS01515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|PTHR30126:SF30|SSF46785|SSF53850
ALIDE_RS01520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010645|IPR020846	Major facilitator superfamily domain|Uncharacterised MFS-type transporter YbfB		G3DSA:1.20.1250.20|PF06779|PTHR23537|PTHR23537:SF1|SSF103473
ALIDE_RS01525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005163|IPR005302|IPR011037|IPR015808	3-alpha domain|Molybdenum cofactor sulfurase, C-terminal|Molybdenum cofactor sulfurase, C-terminal-like|Pyruvate kinase-like, insert domain	GO:0003824|GO:0030151|GO:0030170	G3DSA:2.40.33.20|PF03473|PF03475|PTHR30212|PTHR30212:SF2|SSF50800
ALIDE_RS01530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000866|IPR012336	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Thioredoxin-like fold	GO:0016209|GO:0016491|GO:0055114	G3DSA:3.40.30.10|PF00578|SSF52833
ALIDE_RS01535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013538|IPR023393	Activator of Hsp90 ATPase homologue 1-like|START-like domain	GO:0006950	G3DSA:3.30.530.20|PF08327|SSF55961
ALIDE_RS01540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PTHR13078|SSF54637
ALIDE_RS01545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS01550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS01555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS01560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003660|IPR003661|IPR004358	HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PR00344|PTHR24423|PTHR24423:SF564|SM00304|SM00387|SM00388|SSF158472|SSF47384|SSF55874
ALIDE_RS01565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991|IPR016032	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF292|SM00448|SM00862|SSF46894|SSF52172
ALIDE_RS01570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR12778|SSF103473
ALIDE_RS01575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009057|IPR011051|IPR013096|IPR014710|IPR018060	Cupin 2, conserved barrel|DNA binding HTH domain, AraC-type|Homeodomain-like|RmlC-like cupin domain|RmlC-like jelly roll fold	GO:0003677|GO:0003700|GO:0006355|GO:0043565	G3DSA:1.10.10.60|G3DSA:2.60.120.10|PF07883|PF12833|PTHR11019|PTHR11019:SF39|SM00342|SSF51182
ALIDE_RS01580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR22911|SSF103481
ALIDE_RS01585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001915	Peptidase M48	GO:0004222|GO:0006508	G3DSA:3.30.2010.10|PF01435|PTHR22726
ALIDE_RS01590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005625	PepSY-associated TM protein		PF03929|PTHR34219|PTHR34219:SF3
ALIDE_RS01595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009057|IPR018060	DNA binding HTH domain, AraC-type|Homeodomain-like	GO:0003677|GO:0003700|GO:0006355|GO:0043565	G3DSA:1.10.10.60|PF12833|PTHR11019|PTHR11019:SF61|SM00342|SSF46689
ALIDE_RS01600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PTHR11751|PTHR11751:SF283|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS01605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002078|IPR002197|IPR003593|IPR004096|IPR009057|IPR010523|IPR024096|IPR025662|IPR025943|IPR027417	4-vinyl reductase, 4VR|AAA+ ATPase domain|Activator of aromatic catabolism|DNA binding HTH domain,  Fis-type|Homeodomain-like|NO signalling/Golgi transport  ligand-binding domain|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2	GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.1380.20|G3DSA:3.40.50.300|PD485437|PF00158|PF02830|PF02954|PF06505|PR01590|PS00675|PS00676|PTHR32071|SM00382|SM00989|SSF111126|SSF46689|SSF52540
ALIDE_RS01610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010353	Phenol hydroxylase subunit		PD468738|PF06099
ALIDE_RS01615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003430|IPR009078|IPR012078|IPR012348	Ferritin-like superfamily|Methane/phenol monooxygenase, hydroxylase component|Methane/phenol/toluene hydroxylase|Ribonucleotide reductase-related	GO:0006725|GO:0016491|GO:0016709|GO:0055114	G3DSA:1.10.620.20|PF02332|PIRSF000040|SSF47240
ALIDE_RS01620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003454	Monooxygenase component MmoB/DmpM	GO:0004497|GO:0006725	G3DSA:3.90.56.10|PD004249|PF02406|SSF56029
ALIDE_RS01625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003430|IPR007029|IPR009078|IPR012348	Ferritin-like superfamily|Methane/phenol/toluene hydroxylase|Ribonucleotide reductase-related|YHS domain	GO:0006725|GO:0016491|GO:0055114	G3DSA:1.10.620.20|PF02332|PF04945|SSF47240
ALIDE_RS01630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006756	Phenol hydroxylase		PF04663
ALIDE_RS01635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR001221|IPR001433|IPR008333|IPR012675|IPR017938	2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain|Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel	GO:0009055|GO:0016491|GO:0051536|GO:0055114	G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00410|PTHR19370|PTHR19370:SF32|SSF52343|SSF54292|SSF63380
ALIDE_RS01640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR006058|IPR012675	2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain	GO:0009055|GO:0051536|GO:0051537	G3DSA:3.10.20.30|PF00111|PS00197|SSF54292
ALIDE_RS01645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000486|IPR004360|IPR017624|IPR029068	Catechol 2,3 dioxygenase|Extradiol ring-cleavage dioxygenase, class I /II|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain	GO:0003824|GO:0006725|GO:0008198|GO:0018577|GO:0019439|GO:0055114	G3DSA:3.10.180.10|PF00903|PS00082|PTHR21366|PTHR21366:SF17|SSF54593|TIGR03211
ALIDE_RS01650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005624	Haem-degrading		PF03928|PTHR34309|PTHR34309:SF1|SSF143744
ALIDE_RS01660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025737	MetA-pathway of phenol degradation, putative		PF13557
ALIDE_RS01665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR017628|IPR029510	2-hydroxymuconic semialdehyde dehydrogenase|Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|PTHR11699|PTHR11699:SF213|SSF53720|TIGR03216
ALIDE_RS01670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1		G3DSA:3.40.50.1820|PF00561|PR00111|PTHR10992|SSF53474
ALIDE_RS01675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011234|IPR017632	2-oxopent-4-enoate hydratase|Fumarylacetoacetase, C-terminal-related	GO:0003824|GO:0008152	G3DSA:3.90.850.10|PF01557|PTHR30143|SSF56529|TIGR03220
ALIDE_RS01680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000534|IPR003361|IPR015426|IPR016040	Acetaldehyde dehydrogenase|Acetaldehyde dehydrogenase, C-terminal|NAD(P)-binding domain|Semialdehyde dehydrogenase, NAD-binding	GO:0008774|GO:0016620|GO:0019439|GO:0051287|GO:0055114	G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_01657|PF01118|PF09290|PIRSF015689|PTHR41706|SM00859|SSF51735|SSF55347|TIGR03215
ALIDE_RS01685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000891|IPR012425|IPR013785|IPR017629	4-hydroxy-2-oxovalerate aldolase|Aldolase-type TIM barrel|DmpG-like communication|Pyruvate carboxyltransferase	GO:0003824|GO:0008701|GO:0016833|GO:0019439	G3DSA:1.10.8.60|G3DSA:3.20.20.70|MF_01656|PD005364|PF00682|PF07836|PTHR10277|PTHR10277:SF3|SSF51569|SSF89000|TIGR03217
ALIDE_RS01690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011234|IPR017630	4-oxalocrotonate decarboxylase|Fumarylacetoacetase, C-terminal-related	GO:0003824|GO:0008152	G3DSA:3.90.850.10|PF01557|PTHR30143|SSF56529|TIGR03218
ALIDE_RS01695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS01700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004370|IPR014347|IPR018191	4-oxalocrotonate tautomerase|4-oxalocrotonate tautomerase, Pseudomonas-type|Tautomerase/MIF superfamily	GO:0006725|GO:0016853	G3DSA:3.30.429.20|PF01361|PTHR35530|PTHR35530:SF1|SSF55331|TIGR00013
ALIDE_RS01705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001279	Metallo-beta-lactamase		G3DSA:3.60.15.10|PF00753|PTHR11935|PTHR11935:SF115|SM00849|SSF56281
ALIDE_RS01710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF14|SM00346|SSF46785|SSF55781
ALIDE_RS01715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS01720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006680|IPR032466	Amidohydrolase-related|Metal-dependent hydrolase	GO:0016787	G3DSA:3.20.20.140|PF04909|PTHR35563|PTHR35563:SF1|SSF51556
ALIDE_RS01725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS01730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein		G3DSA:3.50.30.40|PF03737|PTHR33254|PTHR33254:SF5|SSF89562
ALIDE_RS01735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006139|IPR006140|IPR016040|IPR029753	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain	GO:0008152|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF00389|PF02826|PS00670|PS00671|PTHR10996|SSF51735|SSF52283
ALIDE_RS01740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS01745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS01750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006680|IPR032466	Amidohydrolase-related|Metal-dependent hydrolase	GO:0016787	G3DSA:3.20.20.140|PF04909|PTHR35563|PTHR35563:SF1|SSF51556
ALIDE_RS01755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005511|IPR011042|IPR013658	SMP-30/Gluconolactonase/LRE-like region|Senescence marker protein-30 (SMP-30)|Six-bladed beta-propeller, TolB-like		G3DSA:2.120.10.30|PF08450|PR01790|PTHR10907|PTHR10907:SF47|SSF63829
ALIDE_RS01760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS01765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006115|IPR008927|IPR013328|IPR015815|IPR016040|IPR029154	3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0004616|GO:0016491|GO:0051287|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PTHR22981|SSF48179|SSF51735
ALIDE_RS01770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|PTHR11699|SSF53720
ALIDE_RS01775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF14|SM00346|SSF46785|SSF55781
ALIDE_RS01785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1		G3DSA:3.40.50.1820|PF00561|PTHR10992|SSF53474
ALIDE_RS01790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000709|IPR028081|IPR028082	Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I	GO:0006865	G3DSA:3.40.50.2300|PF13458|PR00337|PTHR30483|PTHR30483:SF6|SSF53822
ALIDE_RS01795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF371
ALIDE_RS01800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482
ALIDE_RS01805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PTHR24220|PTHR24220:SF358|SM00382|SSF52540
ALIDE_RS01810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS01815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006680|IPR032466	Amidohydrolase-related|Metal-dependent hydrolase	GO:0016787	G3DSA:3.20.20.140|PF04909|PTHR21240|PTHR21240:SF9|SSF51556
ALIDE_RS01820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|PTHR11751|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS01825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|PTHR10909|PTHR10909:SF195|SSF47203|SSF56645
ALIDE_RS01830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PTHR24322|SSF51735
ALIDE_RS01835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002575|IPR011009	Aminoglycoside phosphotransferase|Protein kinase-like domain		G3DSA:3.30.200.20|G3DSA:3.90.1200.10|PF01636|PTHR21310|PTHR21310:SF14|SSF56112
ALIDE_RS01840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004808|IPR005135	AP endonuclease 1|Endonuclease/exonuclease/phosphatase	GO:0004518|GO:0006281	G3DSA:3.60.10.10|PF03372|PTHR22748|SSF56219|TIGR00195|TIGR00633
ALIDE_RS01845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000836|IPR004467|IPR023031|IPR029057	Orotate phosphoribosyl transferase domain|Orotate phosphoribosyltransferase|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like	GO:0004588|GO:0006221|GO:0009116	G3DSA:3.40.50.2020|MF_01208|PF00156|PTHR19278|PTHR19278:SF36|SSF53271|TIGR00336
ALIDE_RS01855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003789|IPR004413|IPR006075|IPR017958|IPR017959|IPR018027|IPR023168	Asn/Gln amidotransferase|Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic|Aspartyl/glutamyl-tRNA amidotransferase subunit B-related|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E|Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site	GO:0016874|GO:0016884	G3DSA:1.10.10.410|MF_00121|PF02637|PF02934|PS01234|PTHR11659|PTHR11659:SF0|SM00845|SSF55931|SSF89095|TIGR00133
ALIDE_RS01860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000120|IPR004412|IPR023631	Amidase|Amidase signature domain|Glutamyl-tRNA(Gln) amidotransferase A subunit	GO:0006412|GO:0016884	G3DSA:3.90.1300.10|MF_00120|PF01425|PTHR11895|PTHR11895:SF7|SSF75304|TIGR00132
ALIDE_RS01865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003837	Glu-tRNAGln amidotransferase C subunit	GO:0006450	MF_00122|PF02686|PTHR15004|SSF141000|TIGR00135
ALIDE_RS01870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004753	Cell shape determining protein MreB/Mrl	GO:0000902	G3DSA:3.30.420.40|G3DSA:3.90.640.10|PF06723|PR01652|PTHR19375|PTHR19375:SF117|SSF53067|TIGR00904
ALIDE_RS01875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007221	Rod shape-determining protein MreC	GO:0008360	PF04085|PIRSF038471|PTHR34138|PTHR34138:SF1|TIGR00219
ALIDE_RS01880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007227|IPR026034	Cell shape-determining protein MreD|Cell shape-determining protein MreD, proteobacterial type	GO:0008360|GO:0016021	PF04093|PIRSF018472|PTHR37484|TIGR03426
ALIDE_RS01885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001460|IPR005311|IPR012338|IPR017790	Beta-lactamase/transpeptidase-like|Penicillin-binding protein 2|Penicillin-binding protein, dimerisation domain|Penicillin-binding protein, transpeptidase	GO:0008658|GO:0016020	G3DSA:3.40.710.10|G3DSA:3.90.1310.10|PF00905|PF03717|PTHR30627|PTHR30627:SF2|SSF56519|SSF56601|TIGR03423
ALIDE_RS01890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006035|IPR014033|IPR020855|IPR023696	Arginase|Ureohydrolase|Ureohydrolase domain|Ureohydrolase, manganese-binding site	GO:0004053|GO:0006525|GO:0016813|GO:0046872	G3DSA:3.40.800.10|PF00491|PIRSF036979|PR00116|PS01053|PTHR11358|PTHR11358:SF2|SSF52768|TIGR01229
ALIDE_RS01895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002781	Transmembrane protein TauE-like	GO:0016021	PF01925|PTHR30269|PTHR30269:SF0
ALIDE_RS01900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000172|IPR007867|IPR012132|IPR023753	FAD/NAD(P)-binding domain|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal	GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.50.50.60|PF00732|PF05199|PIRSF000137|PS00624|PTHR11552|PTHR11552:SF51|SSF51905|SSF54373
ALIDE_RS01905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003453|IPR030802	ABC transport permease subunit MlaE, Proteobacteria|ABC transporter permease MalE	GO:0006810|GO:0043190	PF02405|PTHR30188|PTHR30188:SF3|TIGR00056
ALIDE_RS01910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417	AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PTHR24220|PTHR24220:SF483|SM00382|SSF52540
ALIDE_RS01915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003399	Mce/MlaD		PF02470|PTHR36698|PTHR36698:SF2
ALIDE_RS01920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005586	ABC-type transport auxiliary lipoprotein component		G3DSA:3.40.50.10610|PF03886|SSF159594
ALIDE_RS01925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS01930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000573|IPR001030|IPR015928|IPR015931|IPR015932|IPR015937	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/isopropylmalate dehydratase	GO:0008152	G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PF00694|PR00415|PTHR11670|SSF52016|SSF53732
ALIDE_RS01935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS01940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein		G3DSA:3.50.30.40|PF03737|PTHR33254|PTHR33254:SF1|SSF89562
ALIDE_RS01945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002771	Multiple antibiotic resistance (MarC)-related	GO:0016021	PF01914|PTHR33508|PTHR33508:SF1|TIGR00427
ALIDE_RS01950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002925|IPR029058	Alpha/Beta hydrolase fold|Dienelactone hydrolase	GO:0016787	G3DSA:3.40.50.1820|PF01738|PTHR17630|PTHR17630:SF42|SSF53474
ALIDE_RS01955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004638|IPR011701|IPR020846	Drug resistance transporter EmrB/QacA subfamily|Major facilitator superfamily|Major facilitator superfamily domain	GO:0006810|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23501|PTHR23501:SF52|SSF103473|TIGR00711
ALIDE_RS01960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032317	RND efflux pump, membrane fusion protein, barrel-sandwich domain		G3DSA:1.20.1600.10|G3DSA:2.40.50.100|PF13533|PF16576|PTHR30386|PTHR30386:SF6|SSF111369
ALIDE_RS01965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423|IPR010131	Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT	GO:0005215|GO:0006810|GO:0008289|GO:0016020	G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|PTHR30203|PTHR30203:SF6|SSF56954|TIGR01845
ALIDE_RS01970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000835|IPR011991	MarR-type HTH domain|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|PF12802|PTHR33164|SM00347|SSF46785
ALIDE_RS01975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002523	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	GO:0016020|GO:0030001|GO:0046873|GO:0055085	G3DSA:1.20.58.340|PF01544|PTHR21535|SSF143865|SSF144083
ALIDE_RS01980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001731|IPR013785|IPR030656	Aldolase-type TIM barrel|Delta-aminolevulinic acid dehydratase|Delta-aminolevulinic acid dehydratase, active site	GO:0003824|GO:0004655|GO:0033014|GO:0046872	G3DSA:3.20.20.70|PF00490|PIRSF001415|PR00144|PS00169|PTHR11458|SM01004|SSF51569
ALIDE_RS01985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:3.90.1550.10|PTHR12561|PTHR12561:SF7|SSF55681
ALIDE_RS01990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005265	Uncharacterised protein family UPF0093		PF03653|PIRSF004638|PTHR40255
ALIDE_RS01995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006976	VanZ-like		PF04892
ALIDE_RS02000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012336	Thioredoxin-like fold		G3DSA:3.40.30.10|PTHR11780|PTHR11780:SF12|SSF52833
ALIDE_RS02005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022742|IPR029058	Alpha/Beta hydrolase fold|Serine aminopeptidase, S33		G3DSA:3.40.50.1820|PF12146|PTHR12277|PTHR12277:SF79|SSF53474
ALIDE_RS02010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001967|IPR012338|IPR012907|IPR015956|IPR018044	Beta-lactamase/transpeptidase-like|Penicillin-binding protein-associated|Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal	GO:0004180|GO:0006508|GO:0009002	G3DSA:2.60.410.10|G3DSA:3.40.710.10|PF00768|PF07943|PR00725|PTHR21581|PTHR21581:SF3|SM00936|SSF56601|SSF69189
ALIDE_RS02015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005679|IPR006032|IPR012340	Nucleic acid-binding, OB-fold|Ribosomal protein S12, bacteria|Ribosomal protein S12/S23	GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015935	G3DSA:2.40.50.140|MF_00403_B|PF00164|PIRSF002133|PR01034|PS00055|PTHR11652|SSF50249|TIGR00981
ALIDE_RS02020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000235|IPR005717|IPR020606|IPR023798	Ribosomal protein S5/S7|Ribosomal protein S7 domain|Ribosomal protein S7, bacterial/organellar-type|Ribosomal protein S7, conserved site	GO:0003723|GO:0003735|GO:0006412|GO:0015935	G3DSA:1.10.455.10|MF_00480_B|PF00177|PIRSF002122|PS00052|PTHR11205|SSF47973|TIGR01029
ALIDE_RS02025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000640|IPR000795|IPR004161|IPR004540|IPR005225|IPR005517|IPR009000|IPR009022|IPR014721|IPR020568|IPR027417|IPR031157	Elongation factor G, III-V domain|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFG, V domain|Translation elongation factor EFG/EF2|Translation elongation factor EFG/EF2, domain IV|Translation elongation factor EFTu/EF1A, domain 2|Translation protein, beta-barrel domain	GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414	G3DSA:2.40.30.10|G3DSA:3.30.230.10|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00054_B|PF00009|PF00679|PF03144|PF03764|PF14492|PR00315|PS00301|PTHR23115|PTHR23115:SF66|SM00838|SM00889|SSF50447|SSF52540|SSF54211|SSF54980|TIGR00231|TIGR00484
ALIDE_RS02030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000795|IPR004160|IPR004161|IPR004541|IPR005225|IPR009000|IPR009001|IPR027417|IPR031157	P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu/EF1A, C-terminal|Translation elongation factor EFTu/EF1A, bacterial/organelle|Translation elongation factor EFTu/EF1A, domain 2|Translation protein, beta-barrel domain	GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414	G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00118_B|PF00009|PF03143|PF03144|PR00315|PS00301|PTHR23115|PTHR23115:SF151|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR00485
ALIDE_RS02035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001848|IPR018268|IPR027486	Ribosomal protein S10|Ribosomal protein S10 domain|Ribosomal protein S10, conserved site	GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:3.30.70.600|MF_00508|PF00338|PR00971|PS00361|PTHR11700|SM01403|SSF54999|TIGR01049
ALIDE_RS02040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000597|IPR009000|IPR019926|IPR019927	Ribosomal protein L3|Ribosomal protein L3, bacterial/organelle-type|Ribosomal protein L3, conserved site|Translation protein, beta-barrel domain	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:2.40.30.10|G3DSA:4.10.960.10|MF_01325_B|PF00297|PS00474|PTHR11229|SSF50447|TIGR03625
ALIDE_RS02045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002136|IPR013005|IPR023574	50S ribosomal protein uL4|Ribosomal protein L4 domain|Ribosomal protein L4/L1e	GO:0003735|GO:0005840|GO:0006412	G3DSA:3.40.1370.10|MF_01328_B|PF00573|PTHR10746|SSF52166|TIGR03953
ALIDE_RS02050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012677|IPR012678|IPR013025	Nucleotide-binding alpha-beta plait domain|Ribosomal protein L23/L15e core domain|Ribosomal protein L25/L23	GO:0000166|GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:3.30.70.330|MF_01369_B|PF00276|PTHR11620|SSF54189
ALIDE_RS02055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002171|IPR005880|IPR008991|IPR012340|IPR014722|IPR014726|IPR022666|IPR022669|IPR022671	Nucleic acid-binding, OB-fold|Ribosomal Proteins L2, RNA binding domain|Ribosomal protein L2|Ribosomal protein L2 domain 2|Ribosomal protein L2, C-terminal|Ribosomal protein L2, bacterial/organellar-type|Ribosomal protein L2, conserved site|Ribosomal protein L2, domain 3|Translation protein SH3-like domain	GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015934|GO:0016740	G3DSA:2.30.30.30|G3DSA:2.40.50.140|G3DSA:4.10.950.10|MF_01320_B|PF00181|PF03947|PIRSF002158|PS00467|PTHR13691|PTHR13691:SF5|SM01382|SM01383|SSF50104|SSF50249|TIGR01171
ALIDE_RS02060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002222|IPR005732|IPR020934|IPR023575	Ribosomal protein S19 conserved site|Ribosomal protein S19, bacterial-type|Ribosomal protein S19, superfamily|Ribosomal protein S19/S15	GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935	G3DSA:3.30.860.10|MF_00531|PF00203|PIRSF002144|PR00975|PS00323|PTHR11880|SSF54570|TIGR01050
ALIDE_RS02065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001063|IPR005727|IPR018260	Ribosomal protein L22, bacterial/chloroplast-type|Ribosomal protein L22/L17|Ribosomal protein L22/L17, conserved site	GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015934	G3DSA:3.90.470.10|MF_01331_B|PF00237|PS00464|PTHR13501|SSF54843|TIGR01044
ALIDE_RS02070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001351|IPR004044|IPR004087|IPR005704|IPR009019|IPR015946|IPR018280	K Homology domain|K Homology domain, type 2|K homology domain, prokaryotic type|K homology domain-like, alpha/beta|Ribosomal protein S3, C-terminal|Ribosomal protein S3, bacterial|Ribosomal protein S3, conserved site	GO:0003676|GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935	G3DSA:3.30.1140.32|G3DSA:3.30.300.20|MF_01309_B|PF00189|PF07650|PS00548|PTHR11760|PTHR11760:SF19|SM00322|SSF54814|SSF54821|TIGR01009
ALIDE_RS02075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000114|IPR016180|IPR020798	Ribosomal protein L10e/L16|Ribosomal protein L16|Ribosomal protein L16, conserved site	GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843	G3DSA:3.90.1170.10|MF_01342|PF00252|PR00060|PS00586|PTHR12220|SSF54686|TIGR01164
ALIDE_RS02080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001854|IPR018254	Ribosomal protein L29|Ribosomal protein L29, conserved site	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:1.10.287.310|MF_00374|PF00831|PS00579|PTHR10916|SSF46561|TIGR00012
ALIDE_RS02085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000266|IPR012340|IPR019979|IPR019984	Nucleic acid-binding, OB-fold|Ribosomal protein S17, bacterial-type|Ribosomal protein S17, conserved site|Ribosomal protein S17/S11	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:2.40.50.140|MF_01345_B|PD001295|PF00366|PR00973|PS00056|PTHR10744|SSF50249|TIGR03635
ALIDE_RS02090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012336|IPR013740	Redoxin|Thioredoxin-like fold	GO:0016491	G3DSA:3.40.30.10|PF08534|PTHR10430|SSF52833
ALIDE_RS02095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR016181	Acyl-CoA N-acyltransferase|GNAT domain	GO:0008080	G3DSA:3.40.630.30|PF00583|PTHR10545|PTHR10545:SF38|SSF55729
ALIDE_RS02100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011577|IPR016174	Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane	GO:0009055|GO:0016020|GO:0016021|GO:0022904	PF01292|SSF81342
ALIDE_RS02105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012336|IPR013740	Redoxin|Thioredoxin-like fold	GO:0016491	G3DSA:3.40.30.10|PF08534|PTHR10681|PTHR10681:SF107|SSF52833
ALIDE_RS02115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004701	Phosphotransferase system, mannose-type IIA component	GO:0009401|GO:0016021	G3DSA:3.40.50.510|PF03610|PTHR33799|SSF53062
ALIDE_RS02120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000032|IPR001020|IPR002114	Phosphocarrier HPr protein-like|Phosphotransferase system, HPr histidine phosphorylation site|Phosphotransferase system, HPr serine phosphorylation site		G3DSA:3.30.1340.10|PF00381|PR00107|PS00369|PS00589|PTHR33705|PTHR33705:SF2|SSF55594|TIGR01003
ALIDE_RS02125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000121|IPR006318|IPR008279|IPR008731|IPR015813|IPR018274|IPR023151|IPR024692	PEP-utilising enzyme, C-terminal|PEP-utilising enzyme, active site|PEP-utilising enzyme, conserved site|PEP-utilising enzyme, mobile domain|Phosphotransferase system, enzyme I|Phosphotransferase system, enzyme I  N-terminal|Phosphotransferase system, enzyme I-like|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824|GO:0008965|GO:0009401|GO:0016310|GO:0016772	G3DSA:1.10.274.10|G3DSA:3.20.20.60|G3DSA:3.50.30.10|PF00391|PF02896|PF05524|PIRSF000732|PR01736|PS00370|PS00742|PTHR22931|PTHR22931:SF28|SSF47831|SSF51621|SSF52009|TIGR01417
ALIDE_RS02130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003698|IPR006638|IPR007197|IPR013785|IPR031691	Aldolase-type TIM barrel|Elongator protein 3/MiaB/NifB|Lipoyl synthase|Lipoyl synthase, N-terminal|Radical SAM	GO:0003824|GO:0009107|GO:0016992|GO:0051536|GO:0051539	G3DSA:3.20.20.70|MF_00206|PF04055|PF16881|PIRSF005963|PTHR10949|SM00729|SSF102114|TIGR00510
ALIDE_RS02135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000544|IPR004143|IPR020605	Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain|Octanoyltransferase|Octanoyltransferase, conserved site	GO:0005737|GO:0006464|GO:0009107|GO:0016415	G3DSA:3.90.1550.10|MF_00013|PD006086|PF03099|PIRSF016262|PS01313|PTHR10993|SSF55681|TIGR00214
ALIDE_RS02140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007454|IPR027471	Uncharacterised protein family UPF0250|YbeD-like domain		G3DSA:3.30.70.1460|MF_00659|PF04359|PTHR38036|PTHR38036:SF1|SSF117991
ALIDE_RS02145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005598	ATP synthase protein I		PF03899
ALIDE_RS02150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000568|IPR023011	ATPase, F0 complex, subunit A|ATPase, F0 complex, subunit A, active site	GO:0015078|GO:0015986	G3DSA:1.20.120.220|MF_01393|PF00119|PS00449|PTHR11410|PTHR11410:SF7|SSF81336|TIGR01131
ALIDE_RS02155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000454|IPR002379|IPR005953|IPR020537	ATPase, F0 complex, subunit C|ATPase, F0 complex, subunit C, DCCD-binding site|ATPase, F0 complex, subunit C, bacterial/chloroplast|V-ATPase proteolipid subunit C-like domain	GO:0015078|GO:0015986|GO:0015991|GO:0033177|GO:0045263	G3DSA:1.20.20.10|MF_01396|PF00137|PR00124|PS00605|SSF81333|TIGR01260
ALIDE_RS02160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002146|IPR005864|IPR028987	ATPase, F0 complex, subunit B, bacterial|ATPase, F0 complex, subunit B/B', bacterial/chloroplast|F-type ATP synthase subunit B-like, membrane domain	GO:0015078|GO:0015986|GO:0045263	G3DSA:1.20.5.620|MF_01398|PF00430|PTHR33445|SSF81573|TIGR01144
ALIDE_RS02165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000711|IPR026015	ATPase, OSCP/delta subunit|F1F0 ATP synthase OSCP/delta subunit, N-terminal domain	GO:0015986|GO:0046933	G3DSA:1.10.520.20|MF_01416|PF00213|PR00125|PTHR11910|SSF47928|TIGR01145
ALIDE_RS02170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000194|IPR000793|IPR004100|IPR005294|IPR020003|IPR023366|IPR027417	ATP synthase subunit alpha-like domain|ATPase, F1 complex alpha/beta subunit, N-terminal domain|ATPase, F1 complex, alpha subunit|ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0015986|GO:0015991|GO:0015992|GO:0016820|GO:0033178|GO:0045261|GO:0046034|GO:0046933|GO:0046961	G3DSA:1.20.150.20|G3DSA:2.40.30.20|G3DSA:3.40.50.300|MF_01346|PF00006|PF00306|PF02874|PS00152|PTHR15184|PTHR15184:SF3|SSF47917|SSF50615|SSF52540|TIGR00962
ALIDE_RS02175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000131|IPR023632|IPR023633	ATPase, F1 complex, gamma subunit|ATPase, F1 complex, gamma subunit conserved site|ATPase, F1 complex, gamma subunit domain	GO:0015986|GO:0045261|GO:0046933|GO:0046961	G3DSA:1.10.287.80|G3DSA:3.40.1380.10|MF_00815|PF00231|PR00126|PS00153|PTHR11693|SSF52943|TIGR01146
ALIDE_RS02180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000194|IPR000793|IPR003593|IPR004100|IPR005722|IPR020003|IPR024034|IPR027417	AAA+ ATPase domain|ATPase, F1 complex alpha/beta subunit, N-terminal domain|ATPase, F1 complex beta subunit/V1 complex, C-terminal|ATPase, F1 complex, beta subunit|ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0015986|GO:0015991|GO:0015992|GO:0016820|GO:0033178|GO:0046034|GO:0046933	G3DSA:1.10.1140.10|G3DSA:2.40.10.170|G3DSA:3.40.50.300|MF_01347|PF00006|PF02874|PS00152|PTHR15184|PTHR15184:SF44|SM00382|SSF47917|SSF50615|SSF52540|TIGR01039
ALIDE_RS02185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001469|IPR020546|IPR020547	ATP synthase delta/epsilon subunit, C-terminal domain|ATPase, F1 complex, delta/epsilon subunit|ATPase, F1 complex, delta/epsilon subunit, N-terminal	GO:0015986|GO:0045261|GO:0046933|GO:0046961	G3DSA:1.20.5.440|G3DSA:2.60.15.10|MF_00530|PD000944|PF02823|PTHR13822|SSF46604|SSF51344|TIGR01216
ALIDE_RS02200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF1|SSF46785|SSF53850
ALIDE_RS02205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007621	TPM domain		PF04536|PTHR30373|PTHR30373:SF3
ALIDE_RS02210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007621	TPM domain		PF04536|PTHR30373|PTHR30373:SF2
ALIDE_RS02215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007156|IPR023353	LemA|LemA-like domain		G3DSA:1.20.1440.20|PF04011|PTHR34478|PTHR34478:SF2|SSF140478
ALIDE_RS02220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009959|IPR032710	NTF2-like domain|Polyketide cyclase SnoaL-like domain		G3DSA:3.10.450.50|PF13474|SSF54427
ALIDE_RS02225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021332	Protein of unknown function DUF2944		PF11161
ALIDE_RS02230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002323|IPR009056	Cytochrome c, class IE|Cytochrome c-like domain	GO:0005506|GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF13442|PR00607|PTHR40942|SSF46626
ALIDE_RS02235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423|IPR010131	Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT	GO:0005215|GO:0006810|GO:0008289|GO:0016020	G3DSA:1.20.1600.10|PF02321|PTHR30203|PTHR30203:SF15|SSF56954|TIGR01845
ALIDE_RS02240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR004764|IPR027463	Acriflavin resistance protein|Hydrophobe/amphiphile efflux-1 HAE1|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3850.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF13|SSF82693|SSF82714|SSF82866|TIGR00915
ALIDE_RS02245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR032317	RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF00529|PF16576|PTHR30158|PTHR30158:SF3|SSF111369|TIGR01730
ALIDE_RS02250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR013572|IPR015893|IPR023772	DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal|Transcription regulator MAATS, C-terminal	GO:0003677	G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PF08361|PR00455|PS01081|PTHR30055|SSF46689|SSF48498
ALIDE_RS02275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000795|IPR004160|IPR004161|IPR004541|IPR005225|IPR009000|IPR009001|IPR027417|IPR031157	P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation elongation factor EFTu/EF1A, C-terminal|Translation elongation factor EFTu/EF1A, bacterial/organelle|Translation elongation factor EFTu/EF1A, domain 2|Translation protein, beta-barrel domain	GO:0003746|GO:0003924|GO:0005525|GO:0005622|GO:0006414	G3DSA:2.40.30.10|G3DSA:3.40.50.300|MF_00118_B|PF00009|PF03143|PF03144|PR00315|PS00301|PTHR23115|PTHR23115:SF151|SSF50447|SSF50465|SSF52540|TIGR00231|TIGR00485
ALIDE_RS02285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001901|IPR005807|IPR022943	Preprotein translocase subunit SecE|Protein translocase complex, SecE/Sec61-gamma subunit|SecE subunit of protein translocation complex	GO:0006605|GO:0006886|GO:0009306|GO:0015450|GO:0016020|GO:0016021	G3DSA:1.20.5.1030|MF_00422|PF00584|PR01650|PTHR33910|PTHR33910:SF1|TIGR00964
ALIDE_RS02290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001062|IPR005824|IPR006645|IPR008991|IPR014722|IPR015869	KOW|NusG, N-terminal|Ribosomal protein L2 domain 2|Transcription antitermination protein, NusG|Transcription antitermination protein, NusG, bacteria, conserved site|Translation protein SH3-like domain	GO:0006355|GO:0032784	G3DSA:2.30.30.30|G3DSA:3.30.70.940|MF_00948|PF00467|PF02357|PR00338|PS01014|PTHR30265|SM00738|SM00739|SSF50104|SSF82679|TIGR00922
ALIDE_RS02295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000911|IPR006519|IPR020783|IPR020784|IPR020785	Ribosomal protein L11, C-terminal|Ribosomal protein L11, N-terminal|Ribosomal protein L11, bacterial-type|Ribosomal protein L11, conserved site|Ribosomal protein L11/L12	GO:0003735|GO:0005840|GO:0006412	G3DSA:1.10.10.250|G3DSA:3.30.1550.10|MF_00736|PD001367|PF00298|PF03946|PS00359|PTHR11661|SM00649|SSF46906|SSF54747|TIGR01632
ALIDE_RS02300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002143|IPR005878|IPR016094|IPR016095|IPR023673|IPR023674|IPR028364	Ribosomal protein L1|Ribosomal protein L1, 2-layer alpha/beta-sandwich|Ribosomal protein L1, 3-layer alpha/beta-sandwich|Ribosomal protein L1, bacterial-type|Ribosomal protein L1, conserved site|Ribosomal protein L1-like|Ribosomal protein L1/ribosomal biogenesis protein	GO:0003723|GO:0003735|GO:0006412|GO:0015934	G3DSA:3.30.190.20|G3DSA:3.40.50.790|MF_01318_B|PF00687|PIRSF002155|PS01199|PTHR23105|PTHR23105:SF5|SSF56808|TIGR01169
ALIDE_RS02305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001790|IPR002363|IPR022973	Ribosomal protein L10|Ribosomal protein L10, eubacterial, conserved site|Ribosomal protein L10P	GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0042254	MF_00362|PF00466|PS01109|PTHR11560|SSF160369
ALIDE_RS02310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000206|IPR008932|IPR013823|IPR014719	Ribosomal protein L7/L12|Ribosomal protein L7/L12, C-terminal|Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like|Ribosomal protein L7/L12, oligomerisation	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:1.20.5.710|G3DSA:3.30.1390.10|MF_00368|PD001326|PF00542|PF16320|SSF48300|SSF54736|TIGR00855
ALIDE_RS02315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007120|IPR007121|IPR007641|IPR007642|IPR007644|IPR007645|IPR010243|IPR014724|IPR015712|IPR019462	DNA-directed RNA polymerase, beta subunit|DNA-directed RNA polymerase, beta subunit, external 1 domain|DNA-directed RNA polymerase, subunit 2|DNA-directed RNA polymerase, subunit 2, domain 6|RNA polymerase Rpb2, OB-fold|RNA polymerase Rpb2, domain 2|RNA polymerase Rpb2, domain 3|RNA polymerase Rpb2, domain 7|RNA polymerase, beta subunit, conserved site|RNA polymerase, beta subunit, protrusion	GO:0003677|GO:0003899|GO:0006351|GO:0032549	G3DSA:2.30.150.10|G3DSA:2.40.270.10|G3DSA:2.40.50.100|G3DSA:2.40.50.150|G3DSA:3.90.1100.10|G3DSA:3.90.1110.10|MF_01321|PF00562|PF04560|PF04561|PF04563|PF04565|PF10385|PS01166|PTHR20856|PTHR20856:SF20|SSF64484|TIGR02013
ALIDE_RS02320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000722|IPR006592|IPR007066|IPR007080|IPR007081|IPR007083|IPR012754	DNA-directed RNA polymerase, subunit beta-prime|RNA polymerase Rpb1, domain 1|RNA polymerase Rpb1, domain 3|RNA polymerase Rpb1, domain 4|RNA polymerase Rpb1, domain 5|RNA polymerase, N-terminal|RNA polymerase, alpha subunit	GO:0003677|GO:0003899|GO:0006351	G3DSA:2.40.40.20|G3DSA:2.40.50.100|MF_01322|PF00623|PF04983|PF04997|PF04998|PF05000|PTHR19376|PTHR19376:SF32|SM00663|SSF64484|TIGR02386
ALIDE_RS02325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007156|IPR023353	LemA|LemA-like domain		G3DSA:1.20.1440.20|PF04011|SSF140478
ALIDE_RS02330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001678|IPR006027|IPR018314|IPR023267|IPR029063	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site|NusB/RsmB/TIM44|RNA (C5-cytosine) methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase|SAM-dependent methyltransferase RsmB/NOP2-type	GO:0003723|GO:0006355|GO:0008168	G3DSA:1.10.287.730|G3DSA:1.10.940.10|G3DSA:3.30.70.1170|G3DSA:3.40.50.150|PF01029|PF01189|PR02008|PS01153|PTHR22807|PTHR22807:SF30|SSF48013|SSF53335
ALIDE_RS02335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025500	Protein of unknown function DUF4390		PF14334
ALIDE_RS02340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR003594|IPR003660|IPR003661|IPR004358|IPR013656|IPR017232	HAMP domain|Histidine kinase-like ATPase, C-terminal domain|PAS domain|PAS fold-4|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, nitrogen fixation and metabolism regulator|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PF08448|PIRSF037532|PR00344|PTHR24423|SM00091|SM00304|SM00387|SM00388|SSF158472|SSF47384|SSF55785|SSF55874
ALIDE_RS02345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR002197|IPR009057|IPR011006	CheY-like superfamily|DNA binding HTH domain,  Fis-type|Homeodomain-like|Signal transduction response regulator, receiver domain	GO:0000160|GO:0003677|GO:0043565	G3DSA:1.10.10.60|G3DSA:3.40.50.2300|PF00072|PF02954|PTHR32071|PTHR32071:SF17|SM00448|SSF46689|SSF52172
ALIDE_RS02365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001387|IPR010982	Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain	GO:0003677|GO:0043565	G3DSA:1.10.260.40|PF13560|PTHR10245|SM00530|SSF47413
ALIDE_RS02370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010359	HTH domain, IrrE-type		PF06114
ALIDE_RS02375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR009057|IPR012337	Homeodomain-like|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0003677|GO:0015074	G3DSA:1.10.10.60|G3DSA:3.30.420.10|PF00665|PTHR35004|PTHR35004:SF2
ALIDE_RS02380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002611|IPR003593|IPR027417|IPR028350	AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase	GO:0005524	G3DSA:3.40.50.300|PF01695|PIRSF003073|PTHR30050|PTHR30050:SF6|SM00382|SSF52540
ALIDE_RS02385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010359	HTH domain, IrrE-type		PF06114
ALIDE_RS02395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.40.50.10540|PF02515|SSF89796
ALIDE_RS02400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001732|IPR008927|IPR014026|IPR014027|IPR016040|IPR017476|IPR028357	6-phosphogluconate dehydrogenase C-terminal domain-like|NAD(P)-binding domain|UDP-glucose 6-dehydrogenase, bacterial type|UDP-glucose/GDP-mannose dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase, C-terminal|UDP-glucose/GDP-mannose dehydrogenase, N-terminal|UDP-glucose/GDP-mannose dehydrogenase, dimerisation	GO:0000271|GO:0003979|GO:0016616|GO:0051287|GO:0055114	G3DSA:1.20.5.100|G3DSA:3.40.50.720|PF00984|PF03720|PF03721|PIRSF000124|PIRSF500134|PTHR11374|PTHR11374:SF18|SM00984|SSF48179|SSF51735|SSF52413|TIGR03026
ALIDE_RS02405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001509|IPR008089|IPR016040	NAD(P)-binding domain|NAD-dependent epimerase/dehydratase, N-terminal domain|Nucleotide sugar epimerase	GO:0003824|GO:0005975|GO:0016857|GO:0050662	G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|PR01713|PTHR10366|PTHR10366:SF77|SSF51735
ALIDE_RS02410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF13231|PTHR33908
ALIDE_RS02415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001173|IPR029044	Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases		G3DSA:3.90.550.10|PF00535|PTHR10859|PTHR10859:SF49|SSF53448
ALIDE_RS02420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022791	Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD		PF03706|PTHR40277
ALIDE_RS02425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000878|IPR008189|IPR014776|IPR014777|IPR018063	SAM-dependent methyltransferase RsmI, conserved site|Tetrapyrrole methylase|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|rRNA small subunit methyltransferase I	GO:0008152|GO:0008168	G3DSA:3.30.950.10|G3DSA:3.40.1010.10|MF_01877|PF00590|PIRSF005917|PS01296|PTHR21091|PTHR21091:SF18|SSF53790|TIGR00096
ALIDE_RS02430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003509|IPR011335|IPR011856	Restriction endonuclease  type II-like|Uncharacterised protein family UPF0102|tRNA endonuclease-like domain	GO:0003676|GO:0004518	G3DSA:3.40.1350.10|MF_00048|PF02021|PTHR34039|PTHR34039:SF1|SSF52980|TIGR00252
ALIDE_RS02435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001347	Sugar isomerase (SIS)	GO:0005975|GO:0030246	G3DSA:3.40.50.10490|PF13580|PTHR30390|PTHR30390:SF5|SSF53697
ALIDE_RS02440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007055|IPR014004	BON domain|Transport-associated and nodulation domain, bacteria		PF04972|PTHR34606|PTHR34606:SF4|SM00749
ALIDE_RS02445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002204|IPR006115|IPR008927|IPR013328|IPR015815|IPR016040|IPR029154	3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|3-hydroxyisobutyrate dehydrogenase-related, conserved site|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0004616|GO:0016491|GO:0051287|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PS00895|PTHR22981|PTHR22981:SF49|SSF48179|SSF51735
ALIDE_RS02450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001482|IPR006321|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Pilus retraction protein PilT|Type II secretion system protein E	GO:0005524|GO:0006810	G3DSA:3.40.50.300|PF00437|PS00662|PTHR30486|PTHR30486:SF3|SSF52540|TIGR01420
ALIDE_RS02455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000595|IPR014710|IPR018490	Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold		G3DSA:2.60.120.10|PF00027|PTHR24567|SM00100|SSF51206
ALIDE_RS02460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001482|IPR006321|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Pilus retraction protein PilT|Type II secretion system protein E	GO:0005524|GO:0006810	G3DSA:3.40.50.300|PF00437|PS00662|PTHR30486|PTHR30486:SF6|SSF52540|TIGR01420
ALIDE_RS02465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001608|IPR011078|IPR029066	Alanine racemase, N-terminal|PLP-binding barrel|Uncharacterised protein family UPF0001		G3DSA:3.20.20.10|PF01168|PIRSF004848|PTHR10146|SSF51419|TIGR00044
ALIDE_RS02470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000192|IPR015421|IPR015422|IPR015424|IPR024169	Aminotransferase class V domain|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2|Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase	GO:0003824	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|PIRSF000524|PTHR21152|PTHR21152:SF21|SSF53383
ALIDE_RS02475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982	Lambda repressor-like, DNA-binding domain	GO:0003677	G3DSA:1.10.260.40
ALIDE_RS02480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007383	Protein of unknown function DUF445		PF04286|PTHR38442
ALIDE_RS02485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004113|IPR006094|IPR016164|IPR016166|IPR016167|IPR016169|IPR016171	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD linked oxidase, N-terminal|FAD-binding, type 2|FAD-binding, type 2, subdomain 1|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2	GO:0003824|GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:1.10.45.10|G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF01565|PF02913|PTHR11748|PTHR11748:SF78|SSF55103|SSF56176
ALIDE_RS02490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF26|SSF46785|SSF53850
ALIDE_RS02495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002376|IPR004810	Formyl transferase, N-terminal|Formyltetrahydrofolate deformylase	GO:0006189|GO:0008864|GO:0009058|GO:0016742	G3DSA:3.30.70.260|G3DSA:3.40.50.170|MF_01927|PF00551|PIRSF036480|PR01575|PTHR10520|PTHR10520:SF7|SSF53328|SSF55021|TIGR00655
ALIDE_RS02500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001610|IPR001633|IPR013655|IPR013656|IPR029787	EAL domain|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS fold-3|PAS fold-4	GO:0005515	G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF08447|PF08448|PF13426|PTHR33121|PTHR33121:SF13|SM00052|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254
ALIDE_RS02505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007314	Haem-binding uptake, Tiki superfamily, ChaN		PF04187|SSF159501
ALIDE_RS02510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000788|IPR013344	Ribonucleotide reductase large subunit, C-terminal|Ribonucleotide reductase, adenosylcobalamin-dependent	GO:0000166|GO:0004748|GO:0006260|GO:0031419|GO:0055114	G3DSA:3.20.70.20|PF02867|PR01183|PTHR11573|PTHR11573:SF3|SSF51998|TIGR02504
ALIDE_RS02515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003018|IPR003594|IPR003660|IPR011712|IPR016380|IPR029016|IPR029095	GAF domain|GAF domain-like|HAMP domain|Histidine kinase-like ATPase, C-terminal domain|NarX-like, N-terminal|Signal transduction histidine kinase, nitrate/nitrite-sensing|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain	GO:0000155|GO:0000160|GO:0004673|GO:0004871|GO:0005515|GO:0007165|GO:0016021|GO:0046983	G3DSA:3.30.450.40|G3DSA:3.30.565.10|PF00672|PF01590|PF02518|PF07730|PF13675|PIRSF003167|PTHR24421|PTHR24421:SF25|SM00304|SM00387|SSF158472|SSF55781|SSF55874
ALIDE_RS02520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000792|IPR001789|IPR011006|IPR011991|IPR016032	CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|PTHR26402|PTHR26402:SF458|SM00421|SM00448|SSF46894|SSF52172
ALIDE_RS02525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23515|SSF103473
ALIDE_RS02530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004737|IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain|Nitrate transporter	GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23515|PTHR23515:SF6|SSF103473|TIGR00886
ALIDE_RS02535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006468|IPR006655|IPR006656|IPR006657|IPR006963|IPR009010|IPR028189	Aspartate decarboxylase-like domain|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, prokaryotic, conserved site|Nitrate reductase, alpha subunit|Nitrate reductase, alpha subunit, N-terminal	GO:0008940|GO:0009055|GO:0009325|GO:0016491|GO:0030151|GO:0042126|GO:0055114	G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|G3DSA:3.90.55.10|G3DSA:4.10.1200.10|PF00384|PF01568|PF14710|PS00490|PS00932|PTHR11615|PTHR11615:SF165|SM00926|SSF50692|SSF53706|TIGR01580
ALIDE_RS02540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006547|IPR017896|IPR029263	4Fe-4S ferredoxin-type, iron-sulphur binding domain|Nitrate reductase, beta subunit|Respiratory nitrate reductase beta, C-terminal	GO:0008940|GO:0009325|GO:0042126|GO:0055114	G3DSA:1.10.3650.10|G3DSA:3.30.70.20|PF13247|PF14711|PTHR11938|PTHR11938:SF8|SSF54862|TIGR01660
ALIDE_RS02545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003765|IPR020945	DMSO/Nitrate reductase chaperone|Nitrate reductase chaperone, NarJ	GO:0051082|GO:0051131	G3DSA:1.10.3480.10|PF02613|PTHR30598|PTHR30598:SF1|SSF89155|TIGR00684
ALIDE_RS02550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003816|IPR023234	NarG-like domain|Nitrate reductase, gamma subunit	GO:0008940|GO:0009325|GO:0055114	G3DSA:1.20.950.20|PF02665|PTHR30598|PTHR30598:SF4|SSF103501|TIGR00351
ALIDE_RS02555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000297|IPR023058|IPR027304	Peptidyl-prolyl cis-trans isomerase, PpiC-type|Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site|Trigger factor/SurA domain	GO:0016853	G3DSA:3.10.50.40|PF00639|PS01096|PTHR10657|PTHR10657:SF15|SSF109998|SSF54534
ALIDE_RS02560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001765|IPR015892	Carbonic anhydrase|Carbonic anhydrase, prokaryotic-like, conserved site	GO:0004089|GO:0008270|GO:0015976	G3DSA:3.40.1050.10|PF00484|PS00704|PS00705|PTHR11002|SM00947|SSF53056
ALIDE_RS02565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000415|IPR026021|IPR029479	Nitroreductase|Nitroreductase-like|Putative NAD(P)H nitroreductase YdjA-like	GO:0016491	G3DSA:3.40.109.10|PF00881|PIRSF000232|PTHR23026|PTHR23026:SF107|SSF55469
ALIDE_RS02575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012312	Haemerythrin-like		G3DSA:1.20.120.520|PF01814
ALIDE_RS02580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021951	Protein of unknown function DUF3567		PF12091
ALIDE_RS02585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021457	Protein of unknown function DUF3108		PF11306
ALIDE_RS02590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011234	Fumarylacetoacetase, C-terminal-related	GO:0003824|GO:0008152	G3DSA:3.90.850.10|PF01557|PTHR11820|PTHR11820:SF85|SSF56529
ALIDE_RS02595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990|IPR019734|IPR029489	O-GlcNAc transferase, C-terminal|Tetratricopeptide repeat|Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.25.40.10|PF13414|PF13432|PF13844|PTHR23083|SM00028|SSF48452|SSF53756
ALIDE_RS02600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006655|IPR006656|IPR006657|IPR006963|IPR009010	Aspartate decarboxylase-like domain|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, prokaryotic, conserved site	GO:0009055|GO:0016491|GO:0030151|GO:0055114	G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF04879|PS00490|PTHR11615|PTHR11615:SF127|SM00926|SSF50692|SSF53706
ALIDE_RS02605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS02610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005000|IPR011206|IPR015813	Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824	G3DSA:3.20.20.60|PF03328|PIRSF015582|PTHR32308|PTHR32308:SF2|SSF51621
ALIDE_RS02615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS02620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PTHR13078|SSF54637
ALIDE_RS02625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS02630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PTHR13078|SSF54637
ALIDE_RS02635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS02640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005000|IPR011206|IPR015813	Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824	G3DSA:3.20.20.60|PF03328|PIRSF015582|PTHR32308|PTHR32308:SF0|SSF51621
ALIDE_RS02645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|SSF46785|SSF55781
ALIDE_RS02650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002933|IPR011650|IPR017439	Amidohydrolase|Peptidase M20|Peptidase M20, dimerisation domain	GO:0008152|GO:0016787	G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|PTHR11014|PTHR11014:SF63|SSF53187|SSF55031|TIGR01891
ALIDE_RS02655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000582|IPR014352	Acyl-CoA-binding protein, ACBP|FERM/acyl-CoA-binding protein, 3-helical bundle	GO:0000062	G3DSA:1.20.80.10|PF00887|PR00689|PTHR23310|SSF47027
ALIDE_RS02660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014553	Predicted aminopeptidase		PF10023|PIRSF029285
ALIDE_RS02665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005019|IPR011257	DNA glycosylase|Methyladenine glycosylase	GO:0003824|GO:0006281|GO:0006284|GO:0008725	G3DSA:1.10.340.30|PF03352|PTHR30037|PTHR30037:SF4|SSF48150
ALIDE_RS02670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003333|IPR029063	Mycolic acid cyclopropane synthase|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008610	G3DSA:3.40.50.150|PF02353|PIRSF003085|PTHR10108|PTHR10108:SF743|SSF53335
ALIDE_RS02675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014991	Protein of unknown function DUF1840		PF08895
ALIDE_RS02680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS02685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS02690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873	AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PTHR36932|PTHR36932:SF1|SSF56801
ALIDE_RS02695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417	AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PTHR24220|PTHR24220:SF498|SM00382|SSF52540
ALIDE_RS02700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|SSF53822
ALIDE_RS02705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482|PTHR30482:SF5
ALIDE_RS02710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF398
ALIDE_RS02715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PTHR24220|PTHR24220:SF519|SM00382|SSF52540
ALIDE_RS02720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845	AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.40.50.980|PF00501|PS00455|PTHR24096|PTHR24096:SF151|SSF56801
ALIDE_RS02725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002477|IPR003593|IPR027417	AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Peptidoglycan binding-like		G3DSA:1.10.101.10|G3DSA:3.40.50.300|PF13401|PTHR35894|PTHR35894:SF2|SM00382|SSF47090|SSF52540
ALIDE_RS02730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032389	Type II secretion system protein B		PF16537
ALIDE_RS02735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000595|IPR011991|IPR012318|IPR014710|IPR018490	Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|PTHR24567|SM00100|SM00419|SSF46785|SSF51206
ALIDE_RS02740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002942|IPR006145|IPR020103	Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain|RNA-binding S4 domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982	G3DSA:3.10.290.10|PF00849|PF01479|PTHR21600|PTHR21600:SF25|SM00363|SSF55120|SSF55174
ALIDE_RS02745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001404|IPR003594|IPR019805|IPR020568|IPR020575	Heat shock protein Hsp90 family|Heat shock protein Hsp90, N-terminal|Heat shock protein Hsp90, conserved site|Histidine kinase-like ATPase, C-terminal domain|Ribosomal protein S5 domain 2-type fold	GO:0005524|GO:0006457|GO:0006950|GO:0051082	G3DSA:3.30.565.10|MF_00505|PF00183|PF02518|PIRSF002583|PR00775|PS00298|PTHR11528|PTHR11528:SF44|SM00387|SSF110942|SSF54211|SSF55874
ALIDE_RS02755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS02760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002575|IPR011009|IPR032882	Aminoglycoside phosphotransferase|Protein kinase-like domain|SrkA/RdoA protein kinase	GO:0004674|GO:0006468	G3DSA:3.90.1200.10|MF_01497|PF01636|PTHR39573|PTHR39573:SF1|SSF56112
ALIDE_RS02765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000719|IPR006016|IPR008271|IPR011009|IPR014729	Protein kinase domain|Protein kinase-like domain|Rossmann-like alpha/beta/alpha sandwich fold|Serine/threonine-protein kinase, active site|UspA	GO:0004672|GO:0005524|GO:0006468|GO:0006950	G3DSA:1.10.510.10|G3DSA:3.30.200.20|G3DSA:3.40.50.620|PF00069|PF00582|PS00108|PTHR24362|PTHR24362:SF160|SM00220|SSF52402|SSF56112
ALIDE_RS02770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000979|IPR011152|IPR024654|IPR029052	Calcineurin-like phosphoesterase domain, lpxH type|Metallo-dependent phosphatase-like|Phosphodiesterase MJ0936/Vps29|Phosphoesterase MJ0912		G3DSA:3.60.21.10|PF12850|PIRSF000883|PTHR11124|PTHR11124:SF2|SSF56300
ALIDE_RS02775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS02780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PTHR13078|SSF54637
ALIDE_RS02785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS02790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006108|IPR006176|IPR006180|IPR008927|IPR013328|IPR016040|IPR022694	3-hydroxyacyl-CoA dehydrogenase|3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|3-hydroxyacyl-CoA dehydrogenase, conserved site|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0003857|GO:0006631|GO:0016491|GO:0055114|GO:0070403	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF00725|PF02737|PIRSF000105|PS00067|PTHR23309|SSF48179|SSF51735
ALIDE_RS02795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000172|IPR007867|IPR012132|IPR023753	FAD/NAD(P)-binding domain|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal	GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.50.50.60|PF00732|PF05199|PIRSF000137|PS00623|PS00624|PTHR11552|SSF51905|SSF54373
ALIDE_RS02800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012349	FMN-binding split barrel	GO:0010181|GO:0016491|GO:0055114	G3DSA:2.30.110.10
ALIDE_RS02805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000412|IPR013525	ABC-2 transporter|ABC-2 type transporter	GO:0006810|GO:0016020	PF01061|PIRSF006648|PR00164|PTHR30413|PTHR30413:SF7
ALIDE_RS02810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF165|SM00382|SSF52540
ALIDE_RS02815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011118|IPR029058	Alpha/Beta hydrolase fold|Tannase/feruloyl esterase		G3DSA:3.40.50.1820|PF07519|PTHR33938|PTHR33938:SF6|SSF53474
ALIDE_RS02820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000845|IPR011271|IPR018017|IPR018953	AMP nucleosidase|AMP nucleoside phosphorylase, N-terminal|Nucleoside phosphorylase|Nucleoside phosphorylase domain	GO:0003824|GO:0008714|GO:0009116|GO:0044209	G3DSA:3.30.1730.10|G3DSA:3.40.50.1580|MF_01932|PF01048|PF10423|PTHR21234|PTHR21234:SF11|SSF53167|TIGR01717
ALIDE_RS02825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001633|IPR013656|IPR029787	EAL domain|GGDEF domain|Nucleotide cyclase|PAS domain|PAS fold-4		G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF08448|PF13426|PTHR33121|PTHR33121:SF13|SM00052|SM00091|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254
ALIDE_RS02830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002524|IPR027469|IPR027470	Cation efflux protein|Cation efflux protein transmembrane domain|Cation efflux protein, cytoplasmic domain	GO:0006812|GO:0008324|GO:0016021|GO:0055085	G3DSA:1.20.1510.10|G3DSA:3.30.70.1350|PF01545|PF16916|PTHR11562|PTHR11562:SF55|SSF160240|SSF161111|TIGR01297
ALIDE_RS02835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003732|IPR023509	D-Tyr tRNAtyr deacylase-like domain|D-aminoacyl-tRNA deacylase DTD	GO:0005737|GO:0016788|GO:0019478	G3DSA:3.50.80.10|MF_00518|PF02580|PTHR10472|SSF69500|TIGR00256
ALIDE_RS02840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002781	Transmembrane protein TauE-like	GO:0016021	PF01925|PTHR30269|PTHR30269:SF10
ALIDE_RS02845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30419|SSF46785|SSF53850
ALIDE_RS02850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS02855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS02860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR011032|IPR013149|IPR014188|IPR016040|IPR020843	Acrylyl-CoA reductase AcuI|Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PTHR11695|PTHR11695:SF13|SM00829|SSF50129|SSF51735|TIGR02823
ALIDE_RS02865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|PTHR24096:SF141|SSF56801
ALIDE_RS02870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002036|IPR020549|IPR023091	Endoribonuclease YbeY|Endoribonuclease YbeY, conserved site|Metalloprotease catalytic domain, predicted	GO:0004222|GO:0006364	G3DSA:3.40.390.30|MF_00009|PF02130|PS01306|PTHR22881|SSF55486|TIGR00043
ALIDE_RS02875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003714|IPR027417	P-loop containing nucleoside triphosphate hydrolase|PhoH-like protein	GO:0005524	G3DSA:3.40.50.300|PF02562|PTHR30473|PTHR30473:SF1|SSF52540
ALIDE_RS02880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000085|IPR003583|IPR010994|IPR011114|IPR012340|IPR013849	Bacterial DNA recombination protein RuvA|DNA helicase, Holliday junction RuvA type, domain I, bacterial|DNA helicase, Holliday junction RuvA type, domain III, C-terminal|Helix-hairpin-helix DNA-binding motif, class 1|Nucleic acid-binding, OB-fold|RuvA domain 2-like	GO:0003677|GO:0003678|GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379	G3DSA:1.10.150.20|G3DSA:1.10.8.10|G3DSA:2.40.50.140|MF_00031|PF01330|PF07499|PF14520|PTHR33796|SM00278|SSF46929|SSF47781|SSF50249|TIGR00084
ALIDE_RS02885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009003	Peptidase S1, PA clan		G3DSA:2.40.10.10|SSF50494
ALIDE_RS02890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013126|IPR018181|IPR021030	Heat shock protein 70 family|Heat shock protein 70, conserved site|Protein of unknown function DUF3731		G3DSA:3.30.420.40|PF00012|PF12531|PR00301|PS00329|PTHR19375|PTHR19375:SF226|SSF53067
ALIDE_RS02895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013126|IPR018181	Heat shock protein 70 family|Heat shock protein 70, conserved site		G3DSA:3.30.420.40|PF00012|PR00301|PS00297|PS00329|PTHR19375|PTHR19375:SF176|SSF53067
ALIDE_RS02900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021212	Domain of unknown function DUF2760		PF10816
ALIDE_RS02905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR004605|IPR008823|IPR008824|IPR011991|IPR027417	AAA+ ATPase domain|DNA helicase, Holliday junction RuvB type|DNA helicase, Holliday junction RuvB type, C-terminal|Holliday junction DNA helicase ruvB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378	G3DSA:1.10.10.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_00016|PD005323|PF05491|PF05496|PTHR13779|PTHR13779:SF25|SM00382|SSF46785|SSF52540|TIGR00635
ALIDE_RS02910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003416	MgtC/SapB/SrpB/YhiD family	GO:0016020	PF02308|PR01837|PTHR33778|PTHR33778:SF3
ALIDE_RS02925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001608|IPR026956|IPR029066	Alanine racemase, N-terminal|D-serine dehydratase-like domain|PLP-binding barrel		G3DSA:3.20.20.10|PF01168|PF14031|PTHR28004|PTHR28004:SF3|SM01119|SSF51419
ALIDE_RS02930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013078|IPR029033	Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1		G3DSA:3.40.50.1240|PF00300|PTHR23029|PTHR23029:SF1|SM00855|SSF53254
ALIDE_RS02935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025411	Domain of unknown function DUF4136		PF13590
ALIDE_RS02940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011063|IPR012089|IPR014729	2-thiocytidine tRNA biosynthesis protein, TtcA|Rossmann-like alpha/beta/alpha sandwich fold|tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	GO:0008033	G3DSA:3.40.50.620|MF_01850|PF01171|PIRSF004976|PTHR11807|PTHR11807:SF16|SSF52402
ALIDE_RS02945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006157	Dihydroneopterin aldolase/epimerase domain	GO:0004150|GO:0006760	G3DSA:3.30.1130.10|PF02152|SM00905|SSF55620|TIGR00526
ALIDE_RS02950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006157	Dihydroneopterin aldolase/epimerase domain	GO:0004150|GO:0006760	G3DSA:3.30.1130.10|PF02152|SM00905|SSF55620
ALIDE_RS02955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00081|PTHR24322|SSF51735
ALIDE_RS02960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003788|IPR029063	Putative S-adenosyl-L-methionine-dependent methyltransferase MidA|S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF02636|PTHR12049|SSF53335
ALIDE_RS02965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004360|IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain		G3DSA:3.10.180.10|PF00903|PTHR21366|PTHR21366:SF14|SSF54593
ALIDE_RS02970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021320	Protein of unknown function DUF2905		PF11146
ALIDE_RS02975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000600	ROK family		G3DSA:3.30.420.40|PF00480|PTHR18964|PTHR18964:SF109|SSF53067
ALIDE_RS02980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001830	Glycosyl transferase, family 20	GO:0003824|GO:0005992	G3DSA:3.40.50.2000|PF00982|PTHR10788|PTHR10788:SF6|SSF53756
ALIDE_RS02985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PTHR31616|PTHR31616:SF2
ALIDE_RS02990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003337|IPR006379|IPR023214	HAD-like domain|HAD-superfamily hydrolase, subfamily IIB|Trehalose-phosphatase	GO:0003824|GO:0005992	G3DSA:3.40.50.1000|PF02358|PTHR10788|PTHR10788:SF42|SSF56784|TIGR00685|TIGR01484
ALIDE_RS02995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005746|IPR012286|IPR012336|IPR013766|IPR017937	Tetrahaem cytochrome domain|Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like fold	GO:0006662|GO:0015035|GO:0045454	G3DSA:1.10.1130.10|G3DSA:3.40.30.10|PF00085|PR00421|PS00194|PTHR10438|PTHR10438:SF281|SSF52833|TIGR01068
ALIDE_RS03000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002646|IPR006674|IPR012006|IPR032828	HD domain|Poly A polymerase, head domain|tRNA nucleotidyltransferase, proteobacteria|tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain	GO:0001680|GO:0003723|GO:0004810|GO:0005524|GO:0006396|GO:0016779	G3DSA:1.10.3090.10|G3DSA:3.30.460.10|MF_01261|MF_01262|PF01743|PF01966|PF12627|PIRSF000813|PTHR13734|SSF81301|SSF81891
ALIDE_RS03005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002078|IPR002197|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417	AAA+ ATPase domain|DNA binding HTH domain,  Fis-type|Homeodomain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site	GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00158|PF02954|PR01590|PS00675|PS00676|PS00688|PTHR32071|SM00382|SSF46689|SSF52540
ALIDE_RS03010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010839	Protein of unknown function DUF1446		PF07287
ALIDE_RS03015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025496	Protein of unknown function DUF4387		PF14330
ALIDE_RS03020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS03025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004843|IPR029052	Calcineurin-like phosphoesterase domain, apaH type|Metallo-dependent phosphatase-like	GO:0016787	G3DSA:3.60.21.10|PF00149|PTHR37844|SSF56300
ALIDE_RS03030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR010987|IPR012336	Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold	GO:0005515	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13410|PF13417|PTHR11260|PTHR11260:SF144|SSF47616|SSF52833
ALIDE_RS03035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002698|IPR024185	5-formyltetrahydrofolate cyclo-ligase|5-formyltetrahydrofolate cyclo-ligase-like domain		G3DSA:3.40.50.10420|PF01812|PIRSF006806|PTHR23407|PTHR23407:SF1|SSF100950|TIGR02727
ALIDE_RS03040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008258|IPR008939|IPR016026|IPR023346	Lysozyme-like domain|Lytic transglycosylase, superhelical U-shaped|Lytic transglycosylase, superhelical U-shaped and linker domain|Transglycosylase SLT domain 1	GO:0004553|GO:0042597	G3DSA:1.10.530.10|G3DSA:1.25.20.10|PF01464|PTHR21666|SSF48435|SSF53955
ALIDE_RS03045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011577|IPR016174	Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane	GO:0009055|GO:0016020|GO:0016021|GO:0022904	G3DSA:1.20.950.20|PF01292|SSF81342
ALIDE_RS03050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025711	PepSY domain		PF13670
ALIDE_RS03055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005123|IPR006620|IPR023550	Oxoglutarate/iron-dependent dioxygenase|PKHD-type hydroxylase|Prolyl 4-hydroxylase, alpha subunit	GO:0005506|GO:0016491|GO:0016705|GO:0016706|GO:0031418|GO:0055114	MF_00657|PF13640|PTHR41536|PTHR41536:SF1|SM00702|SSF51197
ALIDE_RS03060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000262|IPR012133|IPR013785	Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent dehydrogenase	GO:0003824|GO:0010181|GO:0016491|GO:0055114	G3DSA:3.20.20.70|PF01070|PIRSF000138|PTHR10578|PTHR10578:SF65|SSF51395
ALIDE_RS03065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR012910|IPR030148	Catecholate siderophore receptor Fiu|TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain	GO:0004872|GO:0005506|GO:0006810|GO:0009279|GO:0015891|GO:0016020|GO:0016021	G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PTHR32552|PTHR32552:SF8|SSF56935
ALIDE_RS03070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001279	Metallo-beta-lactamase		G3DSA:3.60.15.10|PF00753|PTHR11935|SM00849|SSF56281
ALIDE_RS03075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS03080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1		G3DSA:3.40.50.1820|PF12697|SSF53474
ALIDE_RS03085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014030|IPR014031|IPR016039|IPR018201|IPR020841	Beta-ketoacyl synthase, C-terminal|Beta-ketoacyl synthase, N-terminal|Beta-ketoacyl synthase, active site|Polyketide synthase, beta-ketoacyl synthase domain|Thiolase-like	GO:0003824|GO:0008152	G3DSA:3.40.47.10|PF00109|PF02801|PS00606|PTHR11712|SM00825|SSF53901
ALIDE_RS03090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010083|IPR013114|IPR029069	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA|Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ|HotDog domain	GO:0005737|GO:0006633|GO:0008693	G3DSA:3.10.129.10|PF07977|SSF54637|TIGR01749
ALIDE_RS03095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003010|IPR004563	Apolipoprotein N-acyltransferase|Carbon-nitrogen hydrolase	GO:0006807|GO:0016021|GO:0016410|GO:0016810|GO:0042158	G3DSA:3.60.110.10|MF_01148|PF00795|PTHR38686|SSF56317|TIGR00546
ALIDE_RS03100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644|IPR005170|IPR016166|IPR016169	CBS domain|CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD-binding, type 2|Transporter-associated domain	GO:0003824|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF03471|PTHR22777|SM01091|SSF54631|SSF56176
ALIDE_RS03105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR016181	Acyl-CoA N-acyltransferase|GNAT domain	GO:0008080	G3DSA:3.40.630.30|PF00583|SSF55729
ALIDE_RS03110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000485|IPR011008|IPR011991|IPR019887|IPR019888	AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0005622|GO:0006355|GO:0043565	G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13404|PR00033|PTHR30154|PTHR30154:SF28|SM00344|SSF46785|SSF54909
ALIDE_RS03115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004360|IPR005956|IPR029068	4-hydroxyphenylpyruvate dioxygenase|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain	GO:0003868|GO:0009072|GO:0016701|GO:0055114	G3DSA:3.10.180.10|PF00903|PF14696|PIRSF009283|PTHR11959|PTHR11959:SF1|SSF54593|TIGR01263
ALIDE_RS03120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001273|IPR005960|IPR018301|IPR019774	Aromatic amino acid hydroxylase|Aromatic amino acid hydroxylase, C-terminal|Aromatic amino acid hydroxylase, iron/copper binding site|Phenylalanine-4-hydroxylase, monomeric form	GO:0004497|GO:0004505|GO:0005506|GO:0006559|GO:0009072|GO:0016714|GO:0055114	G3DSA:1.10.800.10|PF00351|PR00372|PS00367|PTHR11473|PTHR11473:SF24|SSF56534|TIGR01267
ALIDE_RS03125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001017|IPR022593|IPR029061	2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal domain|Dehydrogenase, E1 component|Thiamin diphosphate-binding fold	GO:0008152|GO:0016624	G3DSA:3.40.50.970|PF00676|PF12573|PTHR11516|PTHR11516:SF31|SSF52518
ALIDE_RS03130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005475|IPR009014|IPR029061|IPR033247|IPR033248	Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase family|Transketolase, C-terminal domain|Transketolase-like, pyrimidine-binding domain	GO:0003824|GO:0008152	G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF02779|PF02780|PTHR11624|PTHR11624:SF55|SM00861|SSF52518|SSF52922
ALIDE_RS03135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR001078|IPR003016|IPR004167|IPR011053|IPR023213	2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain|E3-binding domain|Single hybrid motif	GO:0008152|GO:0016746	G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|PTHR23151|PTHR23151:SF62|SSF47005|SSF51230|SSF52777
ALIDE_RS03140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004099|IPR006258|IPR012999|IPR016156|IPR023753	Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD-linked reductase, dimerisation domain|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	GO:0004148|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0055114	G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|PTHR22912|PTHR22912:SF146|SSF51905|SSF55424|TIGR01350
ALIDE_RS03145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002310	Glycine-tRNA ligase, alpha subunit	GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426	G3DSA:1.20.58.180|G3DSA:3.30.930.10|MF_00254|PF02091|PR01044|PTHR30075|SSF55681|TIGR00388
ALIDE_RS03150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008909|IPR015944	DALR anticodon binding|Glycine-tRNA ligase, beta subunit	GO:0000166|GO:0004814|GO:0004820|GO:0005524|GO:0005737|GO:0006420|GO:0006426	MF_00255|PF02092|PF05746|PR01045|PTHR30075|PTHR30075:SF2|SSF109604|TIGR00211
ALIDE_RS03155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006543|IPR006549|IPR013954|IPR023214	HAD-like domain|HAD-superfamily hydrolase,subfamily IIIA|Histidinol-phosphate phosphatase|Polynucleotide kinase 3 phosphatase	GO:0016791	G3DSA:3.40.50.1000|PF08645|PTHR23133|PTHR23133:SF7|SSF56784|TIGR01656|TIGR01662
ALIDE_RS03160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002123	Phospholipid/glycerol acyltransferase	GO:0008152|GO:0016746	G3DSA:3.40.1130.10|PF01553|PTHR10434|SM00563|SSF69593
ALIDE_RS03165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002725	Protein of unknown function DUF45		PF01863|PTHR30399
ALIDE_RS03170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001763	Rhodanese-like domain		G3DSA:3.40.250.10|PF00581|SM00450|SSF52821
ALIDE_RS03175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007055|IPR018392	BON domain|LysM domain		G3DSA:3.10.350.10|PF01476|PF04972|PTHR34700|SM00257|SSF54106
ALIDE_RS03180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004619	Type III pantothenate kinase	GO:0004594	G3DSA:3.30.420.40|MF_01274|PF03309|PTHR34265|SSF53067|TIGR00671
ALIDE_RS03185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR015893|IPR025722	Bacterial transcriptional repressor TetR|DNA-binding HTH domain, TetR-type|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal	GO:0003677	G3DSA:1.10.357.10|PF00440|PF13972|PR00455|PTHR30055|PTHR30055:SF30|SSF46689
ALIDE_RS03190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008769	Poly granule associated		PF05597|PTHR38664|PTHR38664:SF1|TIGR01837
ALIDE_RS03195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005888|IPR016040	NAD(P)-binding domain|dTDP-glucose 4,6-dehydratase	GO:0008460|GO:0009225	G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|PTHR10366|PTHR10366:SF41|SSF51735|TIGR01181
ALIDE_RS03200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005913|IPR016040|IPR029903	NAD(P)-binding domain|RmlD-like substrate binding domain|dTDP-4-dehydrorhamnose reductase family		G3DSA:3.40.50.720|PF04321|PTHR10491|PTHR10491:SF4|SSF51735|TIGR01214
ALIDE_RS03205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005835|IPR005907|IPR029044	Glucose-1-phosphate thymidylyltransferase, short form|Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain	GO:0008879|GO:0009058|GO:0016779|GO:0045226	G3DSA:3.90.550.10|PF00483|PTHR22572|PTHR22572:SF105|SSF53448|TIGR01207
ALIDE_RS03210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000888|IPR011051|IPR014710	RmlC-like cupin domain|RmlC-like jelly roll fold|dTDP-4-dehydrorhamnose 3,5-epimerase-related	GO:0008830	G3DSA:2.60.120.10|PD001462|PF00908|PTHR21047|SSF51182|TIGR01221
ALIDE_RS03215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001296|IPR015393	Domain of unknown function DUF1972|Glycosyl transferase, family 1		PF00534|PF09314|PTHR12526|SSF53756
ALIDE_RS03220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001173|IPR006446|IPR029044	Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases|Rhamnosyltransferase		G3DSA:3.90.550.10|PF00535|PTHR22916|PTHR22916:SF9|SSF53448|TIGR01556
ALIDE_RS03225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001482|IPR007831|IPR027417	General secretory system II, protein E, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Type II secretion system protein E	GO:0005524|GO:0006810	G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PF05157|PS00662|PTHR30258|PTHR30258:SF2|SSF160246|SSF52540
ALIDE_RS03230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003004|IPR018076	GspF/PilC family|Type II secretion system F domain		PF00482|PR00812|PTHR30012|PTHR30012:SF0
ALIDE_RS03235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000983|IPR010054|IPR012902|IPR013545	Bacterial general secretion pathway protein G-type pilin|General secretion pathway protein G|Prokaryotic N-terminal methylation site|Type II secretion system protein G	GO:0008565|GO:0015627|GO:0015628	G3DSA:3.30.700.10|PF08334|PF13544|PR00813|PS00409|PTHR30093|PTHR30093:SF9|SSF54523|TIGR01710|TIGR02532
ALIDE_RS03240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012902	Prokaryotic N-terminal methylation site		G3DSA:3.30.700.10|PF13544|PS00409|SSF54523|TIGR02532
ALIDE_RS03245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012902	Prokaryotic N-terminal methylation site		PF13633|PS00409|TIGR02532
ALIDE_RS03250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012902	Prokaryotic N-terminal methylation site		PF13544|PS00409|TIGR02532
ALIDE_RS03255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005628	General secretion pathway protein K	GO:0009306|GO:0016021	G3DSA:1.10.40.60|PF03934|PTHR38831|SSF158544
ALIDE_RS03260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007813	Fimbrial assembly PilN		PF05137
ALIDE_RS03265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007690	Type II secretion system, protein M	GO:0006858	PF10741
ALIDE_RS03275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001775|IPR004846|IPR005644|IPR013356	GspD/PilQ family|NolW-like|Type II secretion system GspD|Type II/III secretion system	GO:0008565|GO:0009306|GO:0015627|GO:0015628|GO:0019867	PF00263|PF03958|PR00811|PTHR30332|PTHR30332:SF0|TIGR02517
ALIDE_RS03290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015943	WD40/YVTN repeat-like-containing domain	GO:0005515	G3DSA:2.130.10.10|SSF63829
ALIDE_RS03295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000297	Peptidyl-prolyl cis-trans isomerase, PpiC-type	GO:0016853	G3DSA:3.10.50.40|PF13145|SSF54534
ALIDE_RS03300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013216|IPR029063	Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008152|GO:0008168	G3DSA:3.40.50.150|PF08241|SSF53335
ALIDE_RS03305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001173|IPR029044	Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases		G3DSA:3.90.550.10|PF00535|PTHR22916|SSF53448
ALIDE_RS03310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF13692|SSF53756
ALIDE_RS03315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000412|IPR013525	ABC-2 transporter|ABC-2 type transporter	GO:0006810|GO:0016020	PF01061|PTHR30413|PTHR30413:SF8
ALIDE_RS03320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR029439	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Wzt, C-terminal	GO:0005524|GO:0016887	G3DSA:2.70.50.60|G3DSA:3.40.50.300|PF00005|PF14524|PS00211|PTHR24220|PTHR24220:SF117|SM00382|SSF52540
ALIDE_RS03330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR020596|IPR029063	Ribosomal RNA adenine methylase transferase, conserved site|S-adenosyl-L-methionine-dependent methyltransferase	GO:0000154|GO:0000179|GO:0008649	G3DSA:3.40.50.150|PF13489|PS01131|PTHR10108|PTHR10108:SF739|SSF53335
ALIDE_RS03335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000189|IPR008258|IPR023346|IPR025392	Domain of unknown function DUF4124|Lysozyme-like domain|Prokaryotic transglycosylase, active site|Transglycosylase SLT domain 1	GO:0000270|GO:0008933|GO:0016020	G3DSA:1.10.530.10|PF01464|PF13511|PS00922|PTHR21666|SSF53955
ALIDE_RS03340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000715	Glycosyl transferase, family 4	GO:0008963|GO:0016021	PF00953|PTHR22926|PTHR22926:SF7
ALIDE_RS03345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001048|IPR001057|IPR004662	Acetylglutamate kinase|Aspartate/glutamate/uridylate kinase|Glutamate/acetylglutamate kinase	GO:0003991|GO:0005737|GO:0006526|GO:0006561	G3DSA:3.40.1160.10|MF_00082_B|PF00696|PIRSF000728|PR00474|PTHR23342|SSF53633|TIGR00761
ALIDE_RS03350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR015893	DNA-binding HTH domain, TetR-type|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal	GO:0003677	G3DSA:1.10.357.10|PF00440|PR00455|PTHR30055|PTHR30055:SF58|SSF46689|SSF48498
ALIDE_RS03355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR015893	DNA-binding HTH domain, TetR-type|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal	GO:0003677	G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PTHR30328|PTHR30328:SF19|SSF46689|SSF48498
ALIDE_RS03360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786|IPR020953|IPR025878	Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase, N-terminal, bacteria|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12418|PF12806|PTHR10909|PTHR10909:SF296|SSF47203|SSF56645
ALIDE_RS03365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR019223	Domain of unknown function DUF2147		PF09917|PTHR36919|PTHR36919:SF1
ALIDE_RS03370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR006108|IPR006176|IPR008927|IPR013328|IPR016040|IPR029045	3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|ClpP/crotonase-like domain|Crotonase superfamily|NAD(P)-binding domain	GO:0003824|GO:0003857|GO:0006631|GO:0008152|GO:0016491|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|PTHR23309|PTHR23309:SF2|SSF48179|SSF51735|SSF52096
ALIDE_RS03375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|PTHR18919|SSF53901|TIGR01930
ALIDE_RS03380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029069	HotDog domain		G3DSA:3.10.129.10|PF13622|SSF54637
ALIDE_RS03385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|PTHR11941:SF17|SSF52096
ALIDE_RS03390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007607	Protein of unknown function DUF583		PF04519
ALIDE_RS03395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006683|IPR029069	HotDog domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR11049|PTHR11049:SF5|SSF54637
ALIDE_RS03400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR011527|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0006810|GO:0016021|GO:0016887|GO:0042626|GO:0055085	G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|PTHR24221|PTHR24221:SF250|SM00382|SSF52540|SSF90123
ALIDE_RS03405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR025110	AMP-binding enzyme C-terminal domain|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PTHR24096|SSF56801
ALIDE_RS03410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PTHR13078|SSF54637
ALIDE_RS03415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS03420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004136|IPR013785	Aldolase-type TIM barrel|Nitronate monooxygenase	GO:0003824|GO:0018580|GO:0055114	G3DSA:3.20.20.70|PF03060|PTHR32332|PTHR32332:SF21|SSF51412
ALIDE_RS03425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF5|SSF46785|SSF53850
ALIDE_RS03430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011394|IPR025984	MazG-like domain|NTP Pyrophosphohydrolase MazG-related, RS21-C6		G3DSA:1.10.287.1080|PF12643|PIRSF029826|PTHR14552|SSF101386
ALIDE_RS03435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004682|IPR018389	TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family	GO:0006810|GO:0030288	PF03480|PIRSF006470|PTHR33376|SSF53850|TIGR00787
ALIDE_RS03440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004681|IPR010656	TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter permease protein	GO:0016021	PF06808|PIRSF006066|PTHR33362|PTHR33362:SF2|TIGR00786
ALIDE_RS03445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007387	Tripartite ATP-independent periplasmic transporter, DctQ component		PF04290|PTHR35011
ALIDE_RS03450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|PTHR30126:SF2|SSF46785|SSF53850
ALIDE_RS03455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001638	Solute-binding protein  family 3/N-terminal domain of MltF		G3DSA:3.40.190.10|PF00497|PTHR30085|PTHR30085:SF2|SM00062|SSF53850
ALIDE_RS03460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065|IPR030202	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|Glutamate/aspartate transport system permease protein GltJ/AatQ	GO:0005215|GO:0006810|GO:0006865|GO:0016020|GO:0016021|GO:0043190	G3DSA:1.10.3720.10|PF00528|PTHR30085|PTHR30085:SF4|SSF161098|TIGR01726
ALIDE_RS03465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065|IPR030205	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|Glutamate/aspartate transport system permease protein GltK/AatM	GO:0005215|GO:0006810|GO:0006865|GO:0016020|GO:0016021|GO:0043190	G3DSA:1.10.3720.10|PF00528|PTHR30614|PTHR30614:SF1|SSF161098|TIGR01726
ALIDE_RS03470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR030206|IPR030679	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|Glutamate/aspartate transport ATP-binding protein GltL/AatP|P-loop containing nucleoside triphosphate hydrolase	GO:0003333|GO:0005524|GO:0006865|GO:0015424|GO:0016887|GO:0043190	G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|PTHR24220|PTHR24220:SF317|SM00382|SSF52540
ALIDE_RS03475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003462|IPR016040|IPR023401	NAD(P)-binding domain|Ornithine cyclodeaminase, N-terminal|Ornithine cyclodeaminase/mu-crystallin		G3DSA:3.30.1780.10|G3DSA:3.40.50.720|PF02423|PTHR13812|PTHR13812:SF19|SSF51735
ALIDE_RS03480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006379|IPR023214	HAD-like domain|HAD-superfamily hydrolase, subfamily IIB		G3DSA:3.40.50.1000|PF08282|SSF56784|TIGR01484
ALIDE_RS03485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000795|IPR004161|IPR004548|IPR005225|IPR009000|IPR009022|IPR027417|IPR031157|IPR032090	Elongation factor G, III-V domain|P-loop containing nucleoside triphosphate hydrolase|Peptide chain release factor 3|Peptide chain release factor 3, C-terminal|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFTu/EF1A, domain 2|Translation protein, beta-barrel domain	GO:0003924|GO:0005525|GO:0005737|GO:0006415|GO:0016149	G3DSA:2.40.30.10|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00072|PF00009|PF03144|PF16658|PR00315|PS00301|PTHR23115|PTHR23115:SF69|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR00503
ALIDE_RS03490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF00106|PR00081|PS00061|PTHR24322|PTHR24322:SF329|SSF51735
ALIDE_RS03495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000043|IPR015878|IPR016040|IPR020082	Adenosylhomocysteinase|NAD(P)-binding domain|S-adenosyl-L-homocysteine hydrolase, NAD binding domain|S-adenosyl-L-homocysteine hydrolase, conserved site	GO:0004013|GO:0006730	G3DSA:3.40.50.1480|G3DSA:3.40.50.720|MF_00563|PF00670|PF05221|PIRSF001109|PS00738|PS00739|PTHR23420|SM00996|SM00997|SSF51735|SSF52283|TIGR00936
ALIDE_RS03500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002877|IPR002942|IPR029063	RNA-binding S4 domain|Ribosomal RNA methyltransferase FtsJ domain|S-adenosyl-L-methionine-dependent methyltransferase	GO:0003723|GO:0008168|GO:0032259	G3DSA:3.10.290.10|G3DSA:3.40.50.150|PF01728|PTHR32319|PTHR32319:SF0|SSF53335
ALIDE_RS03505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003171|IPR004620|IPR029041	5,10-methylenetetrahydrofolate reductase|FAD-linked oxidoreductase-like|Methylenetetrahydrofolate reductase	GO:0004489|GO:0005829|GO:0006555|GO:0009086|GO:0055114	G3DSA:3.20.20.220|PF02219|PTHR21091|PTHR21091:SF31|SSF51730|TIGR00676
ALIDE_RS03510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009009|IPR012997	Rare lipoprotein A|RlpA-like protein, double-psi beta-barrel domain		PF03330|PTHR34183|PTHR34183:SF2|SSF50685|TIGR00413
ALIDE_RS03515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007473|IPR029063	Ribosomal RNA large subunit methyltransferase J|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008649|GO:0070475	G3DSA:3.40.50.150|MF_00934|PF04378|PTHR37426|PTHR37426:SF1|SSF53335
ALIDE_RS03520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000719|IPR011009|IPR017441	Protein kinase domain|Protein kinase, ATP binding site|Protein kinase-like domain	GO:0004672|GO:0005524|GO:0006468	G3DSA:1.10.510.10|G3DSA:3.30.200.20|PF00069|PS00107|PTHR24362|PTHR24362:SF160|SSF56112
ALIDE_RS03525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005822|IPR005823|IPR023564	Ribosomal protein L13|Ribosomal protein L13 domain|Ribosomal protein L13, bacterial-type	GO:0003735|GO:0005840|GO:0006412	G3DSA:3.90.1180.10|MF_01366|PF00572|PIRSF002181|PTHR11545|SSF52161|TIGR01066
ALIDE_RS03530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000754|IPR014721|IPR020568|IPR020574|IPR023035	Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Ribosomal protein S9|Ribosomal protein S9, bacterial/plastid|Ribosomal protein S9, conserved site	GO:0003735|GO:0005840|GO:0006412	G3DSA:3.30.230.10|MF_00532_B|PF00380|PS00360|PTHR21569|SSF54211
ALIDE_RS03535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000361|IPR016092|IPR017870|IPR023063	FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion protein ErpA|FeS cluster insertion, C-terminal, conserved site	GO:0005198|GO:0016226|GO:0051536	G3DSA:2.60.300.12|MF_01380|PF01521|PS01152|PTHR10072|SSF89360|TIGR00049
ALIDE_RS03540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005338	Anhydro-N-acetylmuramic acid kinase	GO:0005524|GO:0006040|GO:0009254|GO:0016773	G3DSA:3.30.420.40|MF_01270|PF03702|PTHR30605|PTHR30605:SF0|SSF53067
ALIDE_RS03545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011055|IPR016047	Duplicated hybrid motif|Peptidase M23		G3DSA:2.70.70.10|PF01551|PTHR21666|PTHR21666:SF221|SSF51261
ALIDE_RS03550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001412|IPR002305|IPR002307|IPR002942|IPR014729|IPR024088|IPR024108	Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ic|RNA-binding S4 domain|Rossmann-like alpha/beta/alpha sandwich fold|Tyrosine-tRNA ligase|Tyrosine-tRNA ligase, bacterial-type|Tyrosine-tRNA ligase, bacterial-type, type 2	GO:0000166|GO:0003723|GO:0004812|GO:0004831|GO:0005524|GO:0005737|GO:0006418|GO:0006437	G3DSA:1.10.240.10|G3DSA:3.10.290.10|G3DSA:3.40.50.620|MF_02007|PF00579|PF01479|PR01040|PS00178|PTHR11766|PTHR11766:SF1|SM00363|SSF52374|SSF55174|TIGR00234
ALIDE_RS03555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30537|PTHR30537:SF26|SSF46785|SSF53850
ALIDE_RS03560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001451|IPR005882|IPR011004|IPR025877|IPR029044	Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase|Hexapeptide repeat|MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases|Trimeric LpxA-like	GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134	G3DSA:2.160.10.10|G3DSA:3.90.550.10|MF_01631|PF00132|PF12804|PTHR22572|PTHR22572:SF115|SSF51161|SSF53448|TIGR01173
ALIDE_RS03565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR004358	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF02518|PR00344|PTHR24423|PTHR24423:SF383|SM00387|SSF47384|SSF55874
ALIDE_RS03570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF13591
ALIDE_RS03575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001623|IPR002939|IPR008971	Chaperone DnaJ, C-terminal|DnaJ domain|HSP40/DnaJ peptide-binding	GO:0006457|GO:0051082	G3DSA:1.10.287.110|G3DSA:2.60.260.20|PF00226|PF01556|PR00625|PTHR24078|PTHR24078:SF190|SM00271|SSF46565|SSF49493
ALIDE_RS03580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000485|IPR011008|IPR011991|IPR019887|IPR019888	AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0005622|GO:0006355|GO:0043565	G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13404|PR00033|PTHR30154|PTHR30154:SF28|SM00344|SSF46785|SSF54909
ALIDE_RS03585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001347|IPR005855|IPR029055	Glucosamine-fructose-6-phosphate aminotransferase, isomerising|Nucleophile aminohydrolases, N-terminal|Sugar isomerase (SIS)	GO:0004360|GO:0005975|GO:0030246|GO:1901137	G3DSA:3.40.50.10490|G3DSA:3.60.20.10|MF_00164|PF01380|PF13522|PTHR10937|PTHR10937:SF0|SSF53697|SSF56235|TIGR01135
ALIDE_RS03590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025209	Domain of unknown function DUF4209		PF13910
ALIDE_RS03595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR020579	Exonuclease VII, large subunit, C-terminal	GO:0008855	PF02601|PTHR30008|PTHR30008:SF0
ALIDE_RS03600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS03605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS03610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021228	Protein of unknown function DUF2791		PF10923
ALIDE_RS03620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000572	Oxidoreductase, molybdopterin-binding domain	GO:0042128	G3DSA:3.90.420.10|PF00174|PTHR19372|PTHR19372:SF9|SSF56524
ALIDE_RS03625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000516|IPR011577|IPR016174	Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane|Nickel-dependent hydrogenase b-type cytochrome subunit	GO:0005506|GO:0006810|GO:0009055|GO:0016020|GO:0016021|GO:0022904	G3DSA:1.20.950.20|PF01292|PR00161|PTHR30485|PTHR30485:SF1|SSF81342
ALIDE_RS03630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991|IPR016032	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF50|SM00448|SM00862|SSF46894|SSF52172
ALIDE_RS03635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003660|IPR003661|IPR004358	HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PR00344|PTHR24423|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS03655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001538|IPR005835|IPR006375|IPR011051|IPR014710|IPR029044	Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase|Mannose-6-phosphate isomerase, type II, C-terminal|Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain|RmlC-like cupin domain|RmlC-like jelly roll fold	GO:0000271|GO:0005976|GO:0009058|GO:0016779	G3DSA:2.60.120.10|G3DSA:3.90.550.10|PF00483|PF01050|PTHR12526|PTHR12526:SF357|SSF51182|SSF53448|TIGR01479
ALIDE_RS03660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003715|IPR017477|IPR019554	PEP-CTERM, putative polysaccharide export protein|Polysaccharide export protein|Soluble ligand binding domain	GO:0015159|GO:0015774|GO:0016020	G3DSA:3.10.560.10|G3DSA:3.30.1950.10|PF02563|PF10531|PTHR33619|TIGR03027
ALIDE_RS03665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003856|IPR014345|IPR032807	Lipopolysaccharide biosynthesis|PEP-CTERM locus polysaccharide chain length determinant|Tyrosine kinase, G-rich domain	GO:0009103|GO:0016020	PF02706|PF13807|PTHR32309|PTHR32309:SF13|TIGR03007
ALIDE_RS03670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025669|IPR027417	AAA domain|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF13614|PTHR32309|PTHR32309:SF13|SSF52540|TIGR03018
ALIDE_RS03675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR017466|IPR027417	AAA+ ATPase domain|ATPase, secretion system, PEP-CTERM, predicted|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF13401|PR00364|PTHR35894|PTHR35894:SF1|SM00382|SSF52540|TIGR03015
ALIDE_RS03680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002509|IPR011330|IPR014344|IPR022560	Domain of unknown function DUF3473|Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain|PEP-CTERM locus, polysaccharide deactylase	GO:0003824|GO:0005975|GO:0016810	G3DSA:3.20.20.370|PF01522|PF11959|PTHR10587|PTHR10587:SF85|SSF88713|TIGR03006
ALIDE_RS03685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016181|IPR017469	Acyl-CoA N-acyltransferase|PEP-CTERM system-associated, FemAB-related		G3DSA:3.40.630.30|PF13480|SSF55729|TIGR03019
ALIDE_RS03690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017521	Sugar transferase, PEP-CTERM, Stp1		PF13692|SSF53756|TIGR03087
ALIDE_RS03695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013426|IPR014263|IPR017540|IPR019127|IPR026392	Exosortase 1|Exosortase EpsH-related|Exosortase, EpsH|Exosortase/Archaeosortase domain|Methanolan biosynthesis EpsI		PF09721|PF11984|TIGR02602|TIGR02914|TIGR03109|TIGR04178
ALIDE_RS03700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001962|IPR006426|IPR014729|IPR017539|IPR017932|IPR029055	Asparagine synthase|Asparagine synthase, glutamine-hydrolyzing|Exosortase 1 system-associated amidotransferase 1|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold	GO:0004066|GO:0006529	G3DSA:3.40.50.620|G3DSA:3.60.20.10|PF00733|PF13537|PIRSF001589|PTHR11772|PTHR11772:SF10|SSF52402|SSF56235|TIGR01536|TIGR03108
ALIDE_RS03705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001296|IPR017522|IPR028098	Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain|Sugar transferase, PEP-CTERM, Stp2		G3DSA:3.40.50.2000|PF00534|PF13439|PTHR12526|SSF53756|TIGR03088
ALIDE_RS03710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001296|IPR024004|IPR028098	Glycosyl transferase, family 1|Glycosyltransferase family 1, Daro2409 family|Glycosyltransferase subfamily 4-like, N-terminal domain		G3DSA:3.40.50.2000|PF00534|PF13579|PTHR12526|SSF53756|TIGR04063
ALIDE_RS03715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003331|IPR029767	UDP-N-acetylglucosamine 2-epimerase WecB-like|UDP-N-acetylglucosamine 2-epimerase domain	GO:0008761	G3DSA:3.40.50.2000|PF02350|PTHR18964|PTHR18964:SF2|SSF53756|TIGR00236
ALIDE_RS03720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001732|IPR008927|IPR014026|IPR014027|IPR016040|IPR017476|IPR028359	6-phosphogluconate dehydrogenase C-terminal domain-like|NAD(P)-binding domain|UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase, C-terminal|UDP-glucose/GDP-mannose dehydrogenase, N-terminal|UDP-glucose/GDP-mannose dehydrogenase, dimerisation	GO:0000271|GO:0016616|GO:0016628|GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF00984|PF03720|PF03721|PIRSF000124|PIRSF500136|PTHR11374|PTHR11374:SF4|SM00984|SSF48179|SSF51735|SSF52413|TIGR03026
ALIDE_RS03725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001296|IPR028098	Glycosyl transferase, family 1|Glycosyltransferase subfamily 4-like, N-terminal domain		G3DSA:3.40.50.2000|PF00534|PF13439|PTHR12526|SSF53756
ALIDE_RS03730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007016|IPR017528	Conserved hypothetical protein CHP03097, O-antigen ligase-related|O-antigen ligase-related		PF04932|TIGR03097
ALIDE_RS03735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002509|IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain	GO:0003824|GO:0005975|GO:0016810	G3DSA:3.20.20.370|PF01522|PTHR34216|SSF88713
ALIDE_RS03740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002509|IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain	GO:0003824|GO:0005975|GO:0016810	G3DSA:3.20.20.370|PF01522|PTHR34216|SSF88713
ALIDE_RS03745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016181	Acyl-CoA N-acyltransferase		PF13480|SSF55729
ALIDE_RS03750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001173|IPR029044	Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases		G3DSA:3.90.550.10|PF00535|PTHR22916|SSF53448
ALIDE_RS03755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF13440|PTHR30250
ALIDE_RS03760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001732|IPR008927|IPR014026|IPR014027|IPR016040|IPR017476|IPR028359	6-phosphogluconate dehydrogenase C-terminal domain-like|NAD(P)-binding domain|UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase|UDP-glucose/GDP-mannose dehydrogenase, C-terminal|UDP-glucose/GDP-mannose dehydrogenase, N-terminal|UDP-glucose/GDP-mannose dehydrogenase, dimerisation	GO:0000271|GO:0016616|GO:0016628|GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF00984|PF03720|PF03721|PIRSF000124|PIRSF500136|PTHR11374|PTHR11374:SF25|SM00984|SSF48179|SSF51735|SSF52413|TIGR03026
ALIDE_RS03765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008089|IPR016040	NAD(P)-binding domain|Nucleotide sugar epimerase	GO:0005975|GO:0016857	G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|PR01713|PTHR10366|PTHR10366:SF472|SSF51735
ALIDE_RS03780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016181	Acyl-CoA N-acyltransferase		PF13480|SSF55729
ALIDE_RS03785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013424|IPR025193	Domain of unknown function DUF4114|PEP-CTERM protein-sorting domain		PF07589|PF13448|TIGR02595
ALIDE_RS03790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR017531|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Hydrolase, ortholog 1, exosortase system type 1 associated		G3DSA:3.40.50.1820|PF12697|SSF53474|TIGR03100
ALIDE_RS03795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017532|IPR022742|IPR029058	Alpha/Beta hydrolase fold|Hydrolase, ortholog 2, exosortase system type 1 associated|Serine aminopeptidase, S33		G3DSA:3.40.50.1820|PF12146|SSF53474|TIGR03101
ALIDE_RS03800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009081	Phosphopantetheine binding ACP domain		G3DSA:1.10.1200.10|PF00550|SSF47336
ALIDE_RS03805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR017529|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801|TIGR03098
ALIDE_RS03810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000183|IPR009006|IPR017530|IPR022643|IPR022644|IPR029066	Alanine racemase/group IV decarboxylase, C-terminal|Orn/DAP/Arg decarboxylase 2, C-terminal|Orn/DAP/Arg decarboxylase 2, N-terminal|Ornithine/DAP/Arg decarboxylase|PLP-binding barrel|Pyridoxal-dependent decarboxylase, exosortase system type 1 associated	GO:0003824	G3DSA:2.40.37.10|G3DSA:3.20.20.10|PF00278|PF02784|PR01179|PTHR11482|PTHR11482:SF5|SSF50621|SSF51419|TIGR03099
ALIDE_RS03815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR004358|IPR014265|IPR029016	GAF domain-like|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, PEP-CTERM system, putative|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:3.30.450.40|G3DSA:3.30.565.10|PF02518|PR00344|PTHR24423|SM00387|SM00388|SSF47384|SSF55781|SSF55874|TIGR02916
ALIDE_RS03820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR002078|IPR002197|IPR003593|IPR009057|IPR011006|IPR014264|IPR025662|IPR025943|IPR025944|IPR027417	AAA+ ATPase domain|CheY-like superfamily|DNA binding HTH domain,  Fis-type|Homeodomain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, PEP-CTERM system, putative|Signal transduction response regulator, receiver domain	GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PF02954|PR01590|PS00675|PS00676|PS00688|PTHR32071|SM00382|SM00448|SSF46689|SSF52172|SSF52540|TIGR02915
ALIDE_RS03825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990|IPR014266|IPR019734	PEP-CTERM system TPR-repeat lipoprotein, putative|Tetratricopeptide repeat|Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.25.40.10|PF13432|PF14559|PTHR23083|SM00028|SSF48452|TIGR02917
ALIDE_RS03830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009003	Peptidase S1, PA clan		G3DSA:2.40.10.10|PF13365|PTHR22939|SSF50494
ALIDE_RS03835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004368|IPR006196|IPR012340	Nucleic acid-binding, OB-fold|RNA-binding domain, S1, IF1 type|Translation initiation factor IF-1	GO:0003723|GO:0003743|GO:0006413	G3DSA:2.40.50.140|MF_00075|PF01176|PTHR33370|SSF50249|TIGR00008
ALIDE_RS03840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004574|IPR027450	Alkylated DNA repair protein AlkB|Alpha-ketoglutarate-dependent dioxygenase AlkB-like	GO:0006281|GO:0055114	G3DSA:2.60.120.590|PF13532|PTHR16557|SSF51197
ALIDE_RS03845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS03850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001221|IPR001433|IPR008333|IPR017938	Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel	GO:0016491|GO:0055114	G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF00175|PF00970|PR00410|PTHR19370|SSF52343|SSF63380
ALIDE_RS03855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029058	Alpha/Beta hydrolase fold		G3DSA:3.40.50.1820|SSF53474
ALIDE_RS03860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002477|IPR009045	Hedgehog signalling/DD-peptidase zinc-binding domain|Peptidoglycan binding-like		G3DSA:1.10.101.10|PF01471|PF13539|SSF55166
ALIDE_RS03865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001853|IPR012336	DSBA-like thioredoxin domain|Thioredoxin-like fold	GO:0015035	G3DSA:3.40.30.10|PF01323|PTHR13887|PTHR13887:SF10|SSF52833
ALIDE_RS03870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010292	Uncharacterised protein family CreA		PF05981|PIRSF003174|PTHR37952|PTHR37952:SF2
ALIDE_RS03875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004101|IPR005479|IPR011810|IPR013221|IPR013815|IPR013816	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Cyanophycin synthetase|Mur ligase, C-terminal|Mur ligase, central	GO:0003824|GO:0005524|GO:0009058|GO:0009059|GO:0016874	G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.1190.10|G3DSA:3.90.190.20|PF02786|PF02875|PF08245|PTHR23135|PTHR23135:SF18|SM01209|SSF53244|SSF53623|SSF56059|TIGR02068
ALIDE_RS03880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005479|IPR011810|IPR013221|IPR013815|IPR013816	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Cyanophycin synthetase|Mur ligase, central	GO:0003824|GO:0005524|GO:0009058|GO:0009059|GO:0016874	G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.1190.10|PF02786|PTHR23135|PTHR23135:SF18|SSF56059|TIGR02068
ALIDE_RS03885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR011527|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0006810|GO:0016021|GO:0016887|GO:0042626|GO:0055085	G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|PTHR24221|SM00382|SSF52540|SSF90123
ALIDE_RS03890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015005	Domain of unknown function DUF1854		PF08909
ALIDE_RS03900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000640|IPR005517|IPR009000|IPR009022|IPR014721|IPR020568|IPR027417	Elongation factor G, III-V domain|P-loop containing nucleoside triphosphate hydrolase|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Translation elongation factor EFG, V domain|Translation elongation factor EFG/EF2, domain IV|Translation protein, beta-barrel domain	GO:0005525	G3DSA:2.40.30.10|G3DSA:3.30.230.10|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|PF00009|PF00679|PF03764|PF14492|PTHR23115|PTHR23115:SF98|SM00838|SM00889|SSF50447|SSF52540|SSF54211|SSF54980
ALIDE_RS03905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010394	5-nucleotidase	GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117	PF06189|PTHR31367|PTHR31367:SF5
ALIDE_RS03910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003004|IPR011850|IPR018076	General secretion pathway protein F|GspF/PilC family|Type II secretion system F domain	GO:0008565|GO:0015627|GO:0015628	PF00482|PR00812|PTHR30012|PTHR30012:SF5|TIGR02120
ALIDE_RS03915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011251|IPR019949	Luciferase family oxidoreductase, group 1|Luciferase-like domain	GO:0016705|GO:0055114	G3DSA:3.20.20.30|PF00296|PTHR30137|PTHR30137:SF2|SSF51679|TIGR03558
ALIDE_RS03920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025991	Chemoreceptor zinc-binding domain		PF13682
ALIDE_RS03925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001482|IPR003593|IPR027417	AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Type II secretion system protein E	GO:0005524|GO:0006810	G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PS00662|PTHR30258|PTHR30258:SF9|SM00382|SSF160246|SSF52540
ALIDE_RS03930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001775|IPR004846|IPR005644|IPR013356	GspD/PilQ family|NolW-like|Type II secretion system GspD|Type II/III secretion system	GO:0008565|GO:0009306|GO:0015627|GO:0015628|GO:0019867	PF00263|PF03958|PR00811|PTHR30332|PTHR30332:SF8|TIGR02517
ALIDE_RS03935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022792	Type II secretion system, protein N		PF01203
ALIDE_RS03940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007690	Type II secretion system, protein M	GO:0006858	PF04612
ALIDE_RS03945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR024230|IPR025691	GspL periplasmic domain|GspL, cytoplasmic actin-ATPase-like domain		PF05134|PF12693|SSF53067
ALIDE_RS03950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005628	General secretion pathway protein K	GO:0009306|GO:0016021	PF03934|PIRSF002786|SSF158544|SSF54523
ALIDE_RS03955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012902	Prokaryotic N-terminal methylation site		PF13633|PS00409|SSF54523|TIGR02532
ALIDE_RS03960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003413|IPR010052|IPR012902	Prokaryotic N-terminal methylation site|Type II secretion system protein I|Type II secretion system protein I domain	GO:0008565|GO:0015627|GO:0015628	G3DSA:3.30.1300.30|PF02501|PF13633|PS00409|PTHR38779|SSF54523|TIGR01707|TIGR02532
ALIDE_RS03965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002416|IPR012902	Prokaryotic N-terminal methylation site|Type II secretion system protein H	GO:0008565|GO:0015627|GO:0015628	PF13633|PS00409|SSF54523|TIGR01708|TIGR02532
ALIDE_RS03970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000983|IPR010054|IPR012902|IPR013545	Bacterial general secretion pathway protein G-type pilin|General secretion pathway protein G|Prokaryotic N-terminal methylation site|Type II secretion system protein G	GO:0008565|GO:0015627|GO:0015628	G3DSA:3.30.700.10|PF08334|PF13544|PR00813|PS00409|PTHR30093|PTHR30093:SF9|SSF54523|TIGR01710|TIGR02532
ALIDE_RS03975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR024961	Type II secretion system protein C, N-terminal		PF11356
ALIDE_RS03980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013078|IPR029033	Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1		G3DSA:3.40.50.1240|PF00300|SM00855|SSF53254
ALIDE_RS03985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003805	Adenosylcobinamide-GDP ribazoletransferase	GO:0008818|GO:0009236|GO:0051073	MF_00719|PF02654|PTHR34148|PTHR34148:SF1
ALIDE_RS03990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000634|IPR001721|IPR001926|IPR005787	ACT-like domain|Serine/threonine dehydratase, pyridoxal-phosphate-binding site|Threonine dehydratase, biosynthetic|Tryptophan synthase beta subunit-like PLP-dependent enzyme	GO:0004794|GO:0006520|GO:0009097|GO:0030170	G3DSA:3.40.1020.10|G3DSA:3.40.50.1100|PF00291|PF00585|PS00165|PTHR10314|PTHR10314:SF30|SSF53686|SSF55021|TIGR01124
ALIDE_RS03995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003718|IPR015946	K homology domain-like, alpha/beta|OsmC/Ohr family		G3DSA:2.20.25.10|G3DSA:3.30.300.20|PF02566|PTHR34352|SSF82784
ALIDE_RS04000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009078|IPR011566|IPR012347	Ferritin-like superfamily|Ferritin-related|Ubiquinone biosynthesis protein Coq7	GO:0006744|GO:0055114	G3DSA:1.20.1260.10|MF_01658|PF03232|PTHR11237|PTHR11237:SF3|SSF47240
ALIDE_RS04005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002299|IPR023614	Porin domain|Porin, Neisseria sp. type	GO:0006810|GO:0015288|GO:0016020	G3DSA:2.40.160.10|PF13609|PR00184|SSF56935
ALIDE_RS04010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023614	Porin domain		G3DSA:2.40.160.10|PF13609|SSF56935
ALIDE_RS04015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30465|PTHR30465:SF47|SSF161098
ALIDE_RS04020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002933|IPR011650|IPR017439	Amidohydrolase|Peptidase M20|Peptidase M20, dimerisation domain	GO:0008152|GO:0016787	G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|PTHR11014|PTHR11014:SF63|SSF53187|SSF55031|TIGR01891
ALIDE_RS04025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR025966	ABC transporter type 1, transmembrane domain MetI-like|Oligopeptide transport permease C-like, N-terminal domain	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PF12911|PTHR30465|PTHR30465:SF67|SSF161098
ALIDE_RS04030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR013563|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0000166|GO:0005524|GO:0015833|GO:0016887	G3DSA:3.40.50.300|PF00005|PF08352|PS00211|PTHR24220|PTHR24220:SF535|SM00382|SSF52540|TIGR01727
ALIDE_RS04035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR013563|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0000166|GO:0005524|GO:0015833|GO:0016887	G3DSA:3.40.50.300|PF00005|PF08352|PS00211|PTHR24220|PTHR24220:SF336|SM00382|SSF52540|TIGR01727
ALIDE_RS04040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005247|IPR008914	Phosphatidylethanolamine-binding protein|YbhB/YbcL		G3DSA:3.90.280.10|PF01161|PTHR30289|PTHR30289:SF0|SSF49777|TIGR00481
ALIDE_RS04045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000281|IPR000843|IPR001347|IPR009057|IPR011991	Helix-turn-helix protein RpiR|Homeodomain-like|Sugar isomerase (SIS)|Transcription regulator HTH, LacI|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0005975|GO:0006355|GO:0030246	G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|PS00356|PTHR30514|PTHR30514:SF1|SSF46689|SSF53697
ALIDE_RS04050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001585|IPR004730|IPR013785|IPR018225	Aldolase-type TIM barrel|Transaldolase type 1|Transaldolase, active site|Transaldolase/Fructose-6-phosphate aldolase	GO:0003824|GO:0004801|GO:0005737|GO:0005975|GO:0006098	G3DSA:3.20.20.70|MF_00492|PF00923|PS00958|PS01054|PTHR10683|PTHR10683:SF18|SSF51569|TIGR00874
ALIDE_RS04055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001672|IPR018189|IPR023096	Phosphoglucose isomerase (PGI)|Phosphoglucose isomerase, C-terminal|Phosphoglucose isomerase, conserved site	GO:0004347|GO:0006094|GO:0006096	G3DSA:1.10.1390.10|G3DSA:3.40.50.10490|MF_00473|PF00342|PR00662|PS00174|PS00765|PTHR11469|SSF53697
ALIDE_RS04060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001844|IPR002423|IPR018370|IPR027409|IPR027413	Chaperonin Cpn60|Chaperonin Cpn60, conserved site|Chaperonin Cpn60/TCP-1 family|GroEL-like apical domain|GroEL-like equatorial domain	GO:0005524|GO:0005737|GO:0006457|GO:0042026	G3DSA:1.10.560.10|G3DSA:3.50.7.10|MF_00600|PF00118|PR00298|PS00296|PTHR11353|SSF48592|SSF52029|SSF54849|TIGR02348
ALIDE_RS04065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011032|IPR018369|IPR020818	Chaperonin GroES, conserved site|GroES chaperonin family|GroES-like	GO:0005524|GO:0005737|GO:0006457	G3DSA:2.30.33.40|MF_00580|PF00166|PR00297|PS00681|PTHR10772|SM00883|SSF50129
ALIDE_RS04070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000086|IPR004821|IPR014729|IPR015797	Cytidyltransferase-like domain|NUDIX hydrolase domain|NUDIX hydrolase domain-like|Rossmann-like alpha/beta/alpha sandwich fold	GO:0003824|GO:0009058|GO:0016787	G3DSA:3.40.50.620|G3DSA:3.90.79.10|PF00293|PF01467|PTHR21342|PTHR21342:SF0|SSF52374|SSF55811|TIGR00125
ALIDE_RS04075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002133|IPR022628|IPR022629|IPR022630|IPR022631|IPR022636	S-adenosylmethionine synthetase|S-adenosylmethionine synthetase superfamily|S-adenosylmethionine synthetase, C-terminal|S-adenosylmethionine synthetase, N-terminal|S-adenosylmethionine synthetase, central domain|S-adenosylmethionine synthetase, conserved site	GO:0004478|GO:0005524|GO:0006556	G3DSA:3.30.300.10|MF_00086|PF00438|PF02772|PF02773|PIRSF000497|PS00376|PS00377|PTHR11964|SSF55973|TIGR01034
ALIDE_RS04080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004960	Bacterial lipid A biosynthesis acyltransferase	GO:0016021|GO:0016740	PF03279|PIRSF026649|PTHR30606
ALIDE_RS04085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004960	Bacterial lipid A biosynthesis acyltransferase	GO:0016021|GO:0016740	PF03279|PIRSF026649|PTHR30606|PTHR30606:SF5
ALIDE_RS04090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30419|PTHR30419:SF0|SSF46785|SSF53850
ALIDE_RS04095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS04100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS04105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001804|IPR019818|IPR024084	Isocitrate and isopropylmalate dehydrogenases family|Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain	GO:0000287|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.718.10|PF00180|PS00470|PTHR11835|PTHR11835:SF34|SM01329|SSF53659
ALIDE_RS04110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006680|IPR032466	Amidohydrolase-related|Metal-dependent hydrolase	GO:0016787	G3DSA:3.20.20.140|PF04909|PTHR35563|PTHR35563:SF1|SSF51556
ALIDE_RS04115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006073|IPR019987|IPR027417	GTP binding domain|GTP-binding protein, ribosome biogenesis, YsxC|P-loop containing nucleoside triphosphate hydrolase	GO:0000917|GO:0005525	G3DSA:3.40.50.300|MF_00321|PF01926|PTHR11649|SSF52540|TIGR03598
ALIDE_RS04120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008168|IPR009056|IPR024167	Cytochrome c, class IC|Cytochrome c-like domain|Cytochrome c4	GO:0005506|GO:0009055|GO:0020037|GO:0042597	G3DSA:1.10.760.10|PF00034|PIRSF000005|PR00605|PTHR33751|PTHR33751:SF3|SSF46626
ALIDE_RS04125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007816	ResB-like domain		PF05140|PTHR31566|PTHR31566:SF0
ALIDE_RS04130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002541|IPR017562	Cytochrome c assembly protein|Cytochrome c-type biogenesis protein CcsA	GO:0017004|GO:0020037	PF01578|PTHR30071|TIGR03144
ALIDE_RS04135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000572|IPR022867	Oxidoreductase, molybdopterin-binding domain|Protein-methionine-sulfoxide reductase subunit MsrP	GO:0016667|GO:0030091|GO:0042128|GO:0043546|GO:0055114	G3DSA:3.90.420.10|MF_01206|PF00174|PTHR19372|PTHR19372:SF1|SSF56524
ALIDE_RS04140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013130|IPR022837	Ferric reductase transmembrane component-like domain|Protein-methionine-sulfoxide reductase subunit MsrQ	GO:0005887|GO:0030091	MF_01207|PF01794|PTHR36964
ALIDE_RS04145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001279	Metallo-beta-lactamase		G3DSA:3.60.15.10|PF00753|PTHR32145|PTHR32145:SF7|SM00849|SSF56281
ALIDE_RS04150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000183|IPR002986|IPR009006|IPR022643|IPR022644|IPR029066	Alanine racemase/group IV decarboxylase, C-terminal|Diaminopimelate decarboxylase, LysA|Orn/DAP/Arg decarboxylase 2, C-terminal|Orn/DAP/Arg decarboxylase 2, N-terminal|Ornithine/DAP/Arg decarboxylase|PLP-binding barrel	GO:0003824|GO:0008836|GO:0009089	G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_02120|PF00278|PF02784|PR01179|PR01181|PTHR11482|PTHR11482:SF5|SSF50621|SSF51419|TIGR01048
ALIDE_RS04155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002908|IPR020895	Frataxin conserved site|Frataxin/CyaY	GO:0008199|GO:0016226	G3DSA:3.30.920.10|MF_00142|PF01491|PS01344|SM01219|SSF55387|TIGR03421
ALIDE_RS04160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001264|IPR001460|IPR012338|IPR012340|IPR023346|IPR031376	Beta-lactamase/transpeptidase-like|Glycosyl transferase, family 51|Lysozyme-like domain|Nucleic acid-binding, OB-fold|Penicillin-binding protein, OB-like domain|Penicillin-binding protein, transpeptidase	GO:0008658	G3DSA:1.10.3810.10|G3DSA:2.40.50.140|G3DSA:3.40.710.10|PF00905|PF00912|PF17092|PTHR32282|PTHR32282:SF5|SSF53955|SSF56601|TIGR02074
ALIDE_RS04165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005883	Type IV pilus assembly protein PilM		G3DSA:3.30.420.40|PF11104|PIRSF019169|PTHR32432|PTHR32432:SF3|SSF53067|TIGR01175
ALIDE_RS04170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007813	Fimbrial assembly PilN		PF05137|PTHR40278|PTHR40278:SF1
ALIDE_RS04175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007445|IPR014717	Pilus assembly protein, PilO|Translation elongation factor EF1B/ribosomal protein S6		G3DSA:3.30.70.60|PF04350|PIRSF016482|PTHR39555|PTHR39555:SF1
ALIDE_RS04180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007446	Pilus assembly protein PilP		PF04351|PIRSF016481
ALIDE_RS04185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001775|IPR004845|IPR004846|IPR005644|IPR011662|IPR013355|IPR021731	AMIN domain|GspD/PilQ family|NolW-like|Secretin/TonB, short N-terminal domain|Type II secretion system GspD, conserved site|Type II/III secretion system|Type IV pilus secretin PilQ	GO:0008565|GO:0009297|GO:0009306|GO:0019867	PF00263|PF03958|PF11741|PR00811|PS00875|PTHR30604|SM00965|TIGR02515
ALIDE_RS04190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008009|IPR013783|IPR015919	Cadherin-like|Immunoglobulin-like fold|Putative Ig	GO:0005509|GO:0016020	G3DSA:2.60.40.10|PF05345|SSF49313
ALIDE_RS04195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016037|IPR030960|IPR030963	3-dehydroquinate synthase AroB|3-dehydroquinate synthase domain|3-dehydroquinate synthase family	GO:0003856|GO:0005737|GO:0009073|GO:0016838	G3DSA:1.20.1090.10|G3DSA:3.40.50.1970|MF_00110|PF01761|PIRSF001455|PTHR21090|SSF56796|TIGR01357
ALIDE_RS04200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003607|IPR006261|IPR006674|IPR023023|IPR026875	Deoxyguanosinetriphosphate triphosphohydrolase|Deoxyguanosinetriphosphate triphosphohydrolase, type 2|HD domain|HD/PDEase domain|Phosphohydrolase-associated domain	GO:0000287|GO:0008832|GO:0046039	G3DSA:1.10.3210.10|MF_01212|PF01966|PF13286|PTHR11373|PTHR11373:SF25|SM00471|SSF109604|TIGR01353
ALIDE_RS04205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009858	Protein of unknown function DUF1415		PF07209
ALIDE_RS04210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025714|IPR029063	Methyltransferase domain|S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF13679|PTHR13369|SSF53335
ALIDE_RS04215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010061|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase|Methylmalonate-semialdehyde dehydrogenase	GO:0004491|GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PTHR11699|PTHR11699:SF181|SSF53720|TIGR01722
ALIDE_RS04220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|PTHR30483:SF17|SSF53822
ALIDE_RS04225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30579|PTHR30579:SF3|SSF46785|SSF53850
ALIDE_RS04230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002686	Transposase IS200-like	GO:0003677|GO:0004803|GO:0006313	G3DSA:3.30.70.1290|PF01797|PTHR34322|PTHR34322:SF1|SM01321|SSF143422
ALIDE_RS04235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002489|IPR002932|IPR006982|IPR013785|IPR017932|IPR029055	Aldolase-type TIM barrel|Glutamate synthase domain|Glutamate synthase, alpha subunit, C-terminal|Glutamate synthase, central-N|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal	GO:0003824|GO:0006537|GO:0006807|GO:0008152|GO:0015930|GO:0016491|GO:0016638|GO:0055114	G3DSA:2.160.20.60|G3DSA:3.20.20.70|G3DSA:3.60.20.10|PF00310|PF01493|PF01645|PF04898|PTHR11938|PTHR11938:SF1|SSF51395|SSF56235|SSF69336
ALIDE_RS04240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006005|IPR009051|IPR016040|IPR023753|IPR028261	Alpha-helical ferredoxin|Dihydroprymidine dehydrogenase domain II|FAD/NAD(P)-binding domain|Glutamate synthase, NADH/NADPH, small subunit 1|NAD(P)-binding domain	GO:0006537|GO:0016491|GO:0016639|GO:0051536|GO:0055114	G3DSA:1.10.1060.10|G3DSA:3.40.50.720|G3DSA:3.50.50.60|PF07992|PF14691|PR00419|PTHR11938|PTHR11938:SF75|SSF46548|SSF51971|TIGR01317
ALIDE_RS04245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001320|IPR001638|IPR018313	Ionotropic glutamate receptor|Solute-binding protein  family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site	GO:0004970|GO:0005215|GO:0006810|GO:0016020	G3DSA:3.40.190.10|PF00497|PS01039|PTHR18966|PTHR18966:SF191|SM00062|SM00079|SSF53850
ALIDE_RS04250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30614|PTHR30614:SF11|SSF161098|TIGR01726
ALIDE_RS04255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR030679	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase	GO:0003333|GO:0005524|GO:0015424|GO:0016887	G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|PTHR24220|PTHR24220:SF327|SM00382|SSF52540
ALIDE_RS04260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021830	Protein of unknown function DUF3422		PF11902
ALIDE_RS04265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001045|IPR029063|IPR030373	Polyamine biosynthesis domain, conserved site|S-adenosyl-L-methionine-dependent methyltransferase|Spermidine/spermine synthases	GO:0003824	G3DSA:2.30.140.10|G3DSA:3.40.50.150|MF_00198|PF01564|PS01330|PTHR11558|SSF53335
ALIDE_RS04270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003826|IPR016067|IPR017716	S-adenosylmethionine decarboxylase family, prokaryotic|S-adenosylmethionine decarboxylase proenzyme|S-adenosylmethionine decarboxylase, core	GO:0004014|GO:0008295	G3DSA:3.60.90.10|MF_00464|PF02675|PTHR33866|PTHR33866:SF2|SSF56276|TIGR03330
ALIDE_RS04275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF368|SM00382|SSF52540
ALIDE_RS04280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003453|IPR030802	ABC transport permease subunit MlaE, Proteobacteria|ABC transporter permease MalE	GO:0006810|GO:0043190	PF02405|PTHR30188|PTHR30188:SF4|TIGR00056
ALIDE_RS04285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003399|IPR030970	Mce/MlaD|Probable phospholipid ABC transporter-binding protein MlaD	GO:0015914	PF02470|PTHR33371|TIGR04430
ALIDE_RS04290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007428	MlaA lipoprotein	GO:0016020	PF04333|PR01805|PTHR30035|PTHR30035:SF3
ALIDE_RS04295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008869|IPR023094|IPR032710	NTF2-like domain|Toluene tolerance Ttg2/phospholipid-binding protein MlaC|Toluene tolerance protein, alpha-helical		G3DSA:1.10.10.640|G3DSA:3.10.450.50|PF05494|PIRSF004649|PTHR36573
ALIDE_RS04300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002645	STAS domain		G3DSA:3.30.750.24|PF13466|SSF52091
ALIDE_RS04305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR013656|IPR029787	GGDEF domain|Nucleotide cyclase|PAS domain|PAS fold-4		G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF08448|PTHR24423|SM00091|SM00267|SSF55073|SSF55785|TIGR00229|TIGR00254
ALIDE_RS04310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF305|SM00382|SSF52540
ALIDE_RS04315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000412|IPR013525	ABC-2 transporter|ABC-2 type transporter	GO:0006810|GO:0016020	PF01061|PIRSF006648|PR00164|PTHR30413|PTHR30413:SF2
ALIDE_RS04320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002634	BolA protein		G3DSA:3.30.300.90|PF01722|PIRSF003113|PTHR12735|PTHR12735:SF3|SSF82657
ALIDE_RS04325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001986|IPR005750|IPR013792	Enolpyruvate transferase domain|RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta|UDP-N-acetylglucosamine 1-carboxyvinyltransferase	GO:0003824|GO:0008760|GO:0016765|GO:0019277	G3DSA:3.65.10.10|MF_00111|PF00275|PTHR21090|SSF55205|TIGR01072
ALIDE_RS04330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001348|IPR013820|IPR018198|IPR024893	ATP phosphoribosyltransferase HisG|ATP phosphoribosyltransferase HisG, short form|ATP phosphoribosyltransferase, catalytic domain|ATP phosphoribosyltransferase, conserved site	GO:0000105|GO:0003879|GO:0005737	G3DSA:3.40.190.10|MF_01018|PF01634|PS01316|PTHR21403|PTHR21403:SF3|SSF53850|TIGR00070
ALIDE_RS04335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001692|IPR012131|IPR016161|IPR022695	Aldehyde/histidinol dehydrogenase|Histidinol dehydrogenase|Histidinol dehydrogenase, conserved site|Histidinol dehydrogenase, monofunctional	GO:0000105|GO:0004399|GO:0008152|GO:0008270|GO:0016491|GO:0051287|GO:0055114	G3DSA:3.40.50.1980|MF_01024|PF00815|PIRSF000099|PR00083|PS00611|PTHR21256|SSF53720|TIGR00069
ALIDE_RS04345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002716|IPR029060	PIN domain|PIN domain-like		PF01850|SSF88723
ALIDE_RS04350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004839|IPR005861|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Histidinol-phosphate aminotransferase family|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0000105|GO:0003824|GO:0004400|GO:0009058|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01023|PF00155|PTHR11751|PTHR11751:SF347|SSF53383
ALIDE_RS04355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000807|IPR020565|IPR020568	Imidazoleglycerol-phosphate dehydratase|Imidazoleglycerol-phosphate dehydratase, conserved site|Ribosomal protein S5 domain 2-type fold	GO:0000105|GO:0004424	G3DSA:3.30.230.40|MF_00076|PF00475|PS00954|PS00955|PTHR23133|PTHR23133:SF2|SSF54211
ALIDE_RS04360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010139|IPR017926|IPR029062	Class I glutamine amidotransferase-like|Glutamine amidotransferase|Imidazole glycerol phosphate synthase, subunit H	GO:0000105|GO:0005737|GO:0016763	G3DSA:3.40.50.880|MF_00278|PF00117|PIRSF000495|PTHR21235|PTHR21235:SF1|SSF52317|TIGR01855
ALIDE_RS04365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006062|IPR006063|IPR011060|IPR013785|IPR023016	Aldolase-type TIM barrel|Histidine biosynthesis|Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase|Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA|Ribulose-phosphate binding barrel	GO:0000105|GO:0003824|GO:0003949|GO:0008152	G3DSA:3.20.20.70|MF_01014|PF00977|PTHR21235|PTHR21235:SF15|SSF51366|TIGR00007
ALIDE_RS04370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021986	Spherulation-specific family 4		PF12138|PTHR35040
ALIDE_RS04375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR031617	Putative exopolysaccharide exporter		PF16933
ALIDE_RS04380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001296|IPR022622	Domain of unknown function DUF3492|Glycosyl transferase, family 1		G3DSA:3.40.50.2000|PF00534|PF11997|PTHR12526|SSF53756
ALIDE_RS04385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990	Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.25.40.10|SSF48452
ALIDE_RS04390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029016|IPR031583	GAF domain-like|PelD, GGDEF domain		PF16963|SSF55781
ALIDE_RS04400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990	Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.25.40.10|PF13429|PF14559|SSF48452|SSF81901
ALIDE_RS04405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002509|IPR004352|IPR011330|IPR016925|IPR017853	Glycoside hydrolase superfamily|Glycoside hydrolase/deacetylase, beta/alpha-barrel|Glycoside-hydrolase family GH114, TIM-barrel domain|NodB homology domain|Uncharacterised conserved protein UCP029570	GO:0003824|GO:0005975|GO:0016810	G3DSA:3.20.20.370|PF03537|PIRSF029570|PTHR35882|SSF51445|SSF88713
ALIDE_RS04410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005886|IPR008089|IPR016040	NAD(P)-binding domain|Nucleotide sugar epimerase|UDP-glucose 4-epimerase GalE	GO:0003978|GO:0005975|GO:0006012|GO:0016857	G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF16363|PR01713|PTHR10366|PTHR10366:SF39|SSF51735|TIGR01179
ALIDE_RS04415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004651|IPR006062|IPR011060|IPR013785	Aldolase-type TIM barrel|Histidine biosynthesis|Histidine biosynthesis, HisF|Ribulose-phosphate binding barrel	GO:0000105|GO:0000107|GO:0003824|GO:0005737|GO:0008152	G3DSA:3.20.20.70|MF_01013|PF00977|PTHR21235|PTHR21235:SF2|SSF51366|TIGR00735
ALIDE_RS04420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002496|IPR026660	Phosphoribosyl-AMP cyclohydrolase|Phosphoribosyl-AMP cyclohydrolase domain	GO:0000105|GO:0004635	MF_01021|PD002610|PF01502|PTHR21256|SSF141734
ALIDE_RS04425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008179|IPR021130	Phosphoribosyl-ATP pyrophosphohydrolase|Phosphoribosyl-ATP pyrophosphohydrolase-like	GO:0000105|GO:0004636	MF_01020|PF01503|PTHR21256|SSF101386|TIGR03188
ALIDE_RS04435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002641|IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase|Patatin/Phospholipase A2-related	GO:0006629|GO:0008152	G3DSA:3.40.1090.10|PF01734|PTHR14226|PTHR14226:SF37|SSF52151
ALIDE_RS04440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001310|IPR011146|IPR019808	HIT-like domain|Histidine triad (HIT) protein|Histidine triad, conserved site	GO:0003824	G3DSA:3.30.428.10|PF11969|PR00332|PS00892|PTHR23089|PTHR23089:SF2|SSF54197
ALIDE_RS04445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003369|IPR006312	Sec-independent protein translocase protein TatA/B/E|Sec-independent protein translocase protein TatA/E	GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021	MF_00236|PF02416|PTHR33162|TIGR01411
ALIDE_RS04450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003369|IPR003998|IPR018448	Sec-independent protein translocase protein TatA/B/E|Twin-arginine translocation protein TatB|Twin-arginine translocation protein TatB-like	GO:0008565|GO:0009306|GO:0015031|GO:0016020|GO:0043953	MF_00237|PF02416|PR01506|PTHR33162|PTHR33162:SF4|TIGR01410
ALIDE_RS04455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002033	Sec-independent periplasmic protein translocase TatC	GO:0016021	MF_00902|PF00902|PR01840|PTHR30371|PTHR30371:SF0|TIGR00945
ALIDE_RS04460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001478|IPR001940|IPR009003|IPR011782	PDZ domain|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do	GO:0004252|GO:0005515|GO:0006508	G3DSA:2.30.42.10|G3DSA:2.40.10.10|PF13180|PF13365|PR00834|PTHR22939|PTHR22939:SF93|SM00228|SSF50156|SSF50494|TIGR02037
ALIDE_RS04465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002678	GTP cyclohydrolase 1 type 2/Nif3		G3DSA:3.40.1390.30|PF01784|PTHR13799|SSF102705|TIGR00486
ALIDE_RS04470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005255|IPR024084	4-hydroxythreonine-4-phosphate dehydrogenase PdxA|Isopropylmalate dehydrogenase-like domain	GO:0008615|GO:0016616|GO:0050570|GO:0051287|GO:0055114	G3DSA:3.40.718.10|MF_00536|PF04166|PTHR30004|PTHR30004:SF6|SSF53659|TIGR00557
ALIDE_RS04475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001185|IPR019823	Large-conductance mechanosensitive channel|Large-conductance mechanosensitive channel, conserved site	GO:0005216|GO:0006810|GO:0016021	MF_00115|PF01741|PR01264|PS01327|PTHR30266|PTHR30266:SF2|SSF81330|TIGR00220
ALIDE_RS04480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005805|IPR006317|IPR014349|IPR017941|IPR019470	Rieske [2Fe-2S] iron-sulphur domain|Rieske iron-sulphur protein|Rieske iron-sulphur protein, C-terminal|Ubiquinol-cytochrome c reductase, iron-sulphur subunit|Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal	GO:0008121|GO:0016020|GO:0016491|GO:0016679|GO:0051537|GO:0055114	G3DSA:2.102.10.10|PF00355|PF10399|PR00162|PTHR10134|PTHR10134:SF8|SSF50022|TIGR01416
ALIDE_RS04485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005798|IPR016174|IPR027387	Cytochrome b/b6, C-terminal|Cytochrome b/b6-like domain|Di-haem cytochrome, transmembrane	GO:0009055|GO:0016020|GO:0016491|GO:0022904	G3DSA:1.20.810.10|PF00032|PF00033|PTHR19271|PTHR19271:SF9|SSF81342|SSF81648
ALIDE_RS04490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002326|IPR009056	Cytochrome c-like domain|Cytochrome c1	GO:0009055|GO:0020037	G3DSA:1.10.760.10|G3DSA:1.20.5.100|PF02167|PTHR10266|PTHR10266:SF3|SSF46626
ALIDE_RS04495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR004046|IPR010987|IPR012336	Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold	GO:0005515	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF13417|PTHR11260|PTHR11260:SF44|SSF47616|SSF52833
ALIDE_RS04500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007481	Stringent starvation protein B		G3DSA:2.30.30.220|PF04386|PTHR37486|PTHR37486:SF1|SSF101738
ALIDE_RS04515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000185|IPR004027|IPR011115|IPR011116|IPR011130|IPR020937|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Protein translocase subunit SecA|SEC-C motif|SecA DEAD-like, N-terminal|SecA Wing/Scaffold|SecA conserved site|SecA preprotein, cross-linking domain	GO:0005524|GO:0006605|GO:0006886|GO:0016020|GO:0017038	G3DSA:1.10.3060.10|G3DSA:3.40.50.300|G3DSA:3.90.1440.10|MF_01382|PF01043|PF02810|PF07516|PF07517|PR00906|PS01312|PTHR30612|SM00957|SM00958|SSF52540|SSF81767|SSF81886|TIGR00963
ALIDE_RS04520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002813|IPR016117	ArgJ-like domain|Arginine biosynthesis protein ArgJ	GO:0004358|GO:0006526	G3DSA:3.60.70.12|MF_01106|PD004193|PF01960|PTHR23100|PTHR23100:SF0|SSF56266|TIGR00120
ALIDE_RS04525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008533|IPR027417	Domain of unknown function DUF815|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF05673|PTHR13779|PTHR13779:SF28|SSF52540
ALIDE_RS04530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000086|IPR015797|IPR020084|IPR020476	NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site	GO:0016787	G3DSA:3.90.79.10|PF00293|PR00502|PS00893|PTHR22769|PTHR22769:SF35|SSF55811
ALIDE_RS04535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005584|IPR013088	DNA gyrase inhibitor YacG|Zinc finger, NHR/GATA-type	GO:0006355|GO:0008270	G3DSA:3.30.50.10|MF_00649|PF03884|PTHR36150|PTHR36150:SF1|SSF57716
ALIDE_RS04540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009777|IPR027462	Cell division protein ZapD|Z ring-associated protein D, C-terminal domain		G3DSA:1.10.3900.10|G3DSA:2.60.440.10|MF_01092|PF07072|PTHR39455|PTHR39455:SF1|SSF160950
ALIDE_RS04545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001977|IPR027417	Dephospho-CoA kinase|P-loop containing nucleoside triphosphate hydrolase	GO:0004140|GO:0005524|GO:0015937	G3DSA:3.40.50.300|MF_00376|PF01121|PTHR10695|SSF52540|TIGR00152
ALIDE_RS04550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000045|IPR010627|IPR014032	Peptidase A24A, N-terminal|Peptidase A24A, prepilin type IV, bacterial|Prepilin type IV endopeptidase, peptidase domain	GO:0004190|GO:0016020	PF01478|PF06750|PR00864|PTHR30487|PTHR30487:SF0
ALIDE_RS04555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003004|IPR018076	GspF/PilC family|Type II secretion system F domain		PF00482|PR00812|PTHR30012|PTHR30012:SF0
ALIDE_RS04560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001482|IPR003593|IPR007831|IPR013374|IPR027417	AAA+ ATPase domain|ATPase, type IV, pilus assembly, PilB|General secretory system II, protein E, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Type II secretion system protein E	GO:0005524|GO:0006810|GO:0008565|GO:0009297	G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PF05157|PS00662|PTHR30258|PTHR30258:SF1|SM00382|SSF160246|SSF52540|TIGR02538
ALIDE_RS04575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS04580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS04585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762|IPR023109	DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PTHR30349|PTHR30349:SF20|SSF56349
ALIDE_RS04595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000092|IPR008949|IPR017446	Isoprenoid synthase domain|Polyprenyl synthetase|Polyprenyl synthetase-related	GO:0008299	G3DSA:1.10.600.10|PF00348|PS00444|PS00723|PTHR12001|PTHR12001:SF47|SSF48576
ALIDE_RS04600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001787|IPR018258|IPR028909	Ribosomal protein L21|Ribosomal protein L21, conserved site|Ribosomal protein L21-like	GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412	MF_01363|PF00829|PS01169|PTHR21349|SSF141091|TIGR00061
ALIDE_RS04605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001684|IPR018261	Ribosomal protein L27|Ribosomal protein L27, conserved site	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:2.40.50.100|MF_00539|PD003114|PF01016|PR00063|PS00831|PTHR15893|SSF110324|TIGR00062
ALIDE_RS04610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006073|IPR006074|IPR006169|IPR014100|IPR027417	GTP binding domain|GTP-binding protein Obg/CgtA|GTP1/OBG domain|GTP1/OBG, conserved site|P-loop containing nucleoside triphosphate hydrolase	GO:0000287|GO:0003924|GO:0005525	G3DSA:2.70.210.12|G3DSA:3.40.50.300|MF_01454|PF01018|PF01926|PIRSF002401|PR00326|PS00905|PTHR11702|PTHR11702:SF3|SSF52540|SSF82051|TIGR02729
ALIDE_RS04615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001048|IPR001057|IPR002478|IPR005715|IPR011529|IPR015947|IPR019797	Aspartate/glutamate/uridylate kinase|Glutamate 5-kinase|Glutamate 5-kinase, conserved site|Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase|Glutamate/acetylglutamate kinase|PUA domain|PUA-like domain	GO:0003723|GO:0004349|GO:0005737|GO:0006561	G3DSA:2.30.130.10|G3DSA:3.40.1160.10|MF_00456|PF00696|PF01472|PIRSF000729|PR00474|PS00902|PTHR11063|PTHR11063:SF6|SM00359|SSF53633|SSF88697|TIGR01027
ALIDE_RS04620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000086|IPR015797|IPR020084|IPR020476|IPR022927	NUDIX hydrolase|NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site|RNA pyrophosphohydrolase RppH	GO:0016787	G3DSA:3.90.79.10|MF_00298|PF00293|PR00502|PS00893|PTHR23114|SSF55811
ALIDE_RS04625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002314|IPR002316|IPR004154|IPR004500|IPR007214|IPR023717	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Anticodon-binding|Proline-tRNA ligase, class IIa|Prolyl-tRNA synthetase, class IIa, bacterial-type|Prolyl-tRNA synthetase, class IIa, type 1|YbaK/aminoacyl-tRNA synthetase-associated domain	GO:0000166|GO:0002161|GO:0004812|GO:0004827|GO:0005524|GO:0005737|GO:0006418|GO:0006433	G3DSA:3.30.930.10|G3DSA:3.40.50.800|G3DSA:3.90.960.10|MF_01569|PF00587|PF03129|PF04073|PIRSF001535|PR01046|PTHR11451|PTHR11451:SF3|SSF52954|SSF55681|SSF55826|TIGR00409
ALIDE_RS04630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008258|IPR023346	Lysozyme-like domain|Transglycosylase SLT domain 1		G3DSA:1.10.530.10|PF01464|PTHR21666|SSF53955
ALIDE_RS04635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644|IPR002550|IPR005170|IPR016166|IPR016169	CBS domain|CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|Domain of unknown function DUF21|FAD-binding, type 2|Transporter-associated domain	GO:0003824|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF01595|PF03471|PTHR22777|PTHR22777:SF16|SM01091|SSF54631|SSF56176
ALIDE_RS04640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR003959|IPR027065|IPR027417	AAA+ ATPase domain|ATPase, AAA-type, core|Lon protease|P-loop containing nucleoside triphosphate hydrolase	GO:0004176|GO:0004252|GO:0005524|GO:0030163	G3DSA:3.40.50.300|PF00004|PTHR10046|PTHR10046:SF47|SM00382|SSF52540
ALIDE_RS04645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002109|IPR004480|IPR012336|IPR014434	Glutaredoxin|Monothiol glutaredoxin|Monothiol glutaredoxin-related|Thioredoxin-like fold	GO:0009055|GO:0015035|GO:0045454	G3DSA:3.40.30.10|PF00462|PIRSF005894|PTHR10293|SSF52833|TIGR00365
ALIDE_RS04650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002052|IPR004556|IPR007848|IPR019874|IPR029063	DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase small domain|Modification methylase HemK|Protein-(glutamine-N5) methyltransferase, release factor-specific|S-adenosyl-L-methionine-dependent methyltransferase	GO:0003676|GO:0006479|GO:0008168|GO:0008276|GO:0032259	G3DSA:1.10.8.10|G3DSA:3.40.50.150|MF_02126|PF05175|PS00092|PTHR18895|PTHR18895:SF64|SSF53335|TIGR00536|TIGR03534
ALIDE_RS04655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000352|IPR004373|IPR005139|IPR014720	Double-stranded RNA-binding domain|Peptide chain release factor|Peptide chain release factor 1|Peptide chain release factor class I/class II	GO:0003747|GO:0005737|GO:0006415|GO:0016149	G3DSA:1.20.58.410|G3DSA:3.30.160.20|MF_00093|PF00472|PF03462|PS00745|PTHR11075|PTHR11075:SF9|SM00937|SSF75620|TIGR00019
ALIDE_RS04660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000343|IPR006151|IPR015895|IPR015896|IPR016040|IPR018214	Glutamyl-tRNA reductase, conserved site|NAD(P)-binding domain|Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal|Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain	GO:0008883|GO:0033014|GO:0050661|GO:0055114	G3DSA:3.40.50.720|MF_00087|PF00745|PF01488|PF05201|PIRSF000445|PS00747|PTHR21089|PTHR21089:SF3|SSF51735|SSF69075|SSF69742|TIGR01035
ALIDE_RS04670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30537|PTHR30537:SF26|SSF46785|SSF53850
ALIDE_RS04675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS04680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002508|IPR007709	Cell wall hydrolase/autolysin, catalytic|N-formylglutamate amidohydrolase	GO:0008745|GO:0009253	G3DSA:3.40.630.40|PF05013|SSF53187
ALIDE_RS04685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006685|IPR010920|IPR011014|IPR011066|IPR022249	Domain of unknown function DUF3772|LSM domain|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS, C-terminal|Mechanosensitive ion channel MscS, transmembrane-2	GO:0016020|GO:0055085	G3DSA:2.30.30.60|G3DSA:3.30.70.100|PF00924|PF12607|PTHR30347|PTHR30347:SF3|SSF50182|SSF82689|SSF82861
ALIDE_RS04690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004129|IPR017946|IPR030395	Glycerophosphodiester phosphodiesterase domain|Glycerophosphoryl diester phosphodiesterase|PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	GO:0006629|GO:0008081|GO:0008889	G3DSA:3.20.20.190|PF03009|PTHR23344|PTHR23344:SF20|SSF51695
ALIDE_RS04695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR008995|IPR012340|IPR013611|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2	GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0016887|GO:0043190	G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00005|PF08402|PS00211|PTHR24220|PTHR24220:SF151|SM00382|SSF50331|SSF52540
ALIDE_RS04700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR030165	ABC transporter type 1, transmembrane domain MetI-like|sn-glycerol-3-phosphate transport system permease protein UgpE	GO:0001407|GO:0005887|GO:0006810|GO:0015794|GO:0016020|GO:0055052	G3DSA:1.10.3720.10|PF00528|PTHR32243|PTHR32243:SF31|SSF161098
ALIDE_RS04705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR32243|PTHR32243:SF13|SSF161098
ALIDE_RS04710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:3.40.190.10|PF13416|PTHR30061|PTHR30061:SF7|SSF53850
ALIDE_RS04715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006139|IPR006140|IPR016040|IPR029015|IPR029752|IPR029753	D-3-phosphoglycerate dehydrogenase, type2|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain	GO:0004617|GO:0006564|GO:0008152|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.30.70.260|G3DSA:3.40.50.720|PF00389|PF02826|PS00065|PS00670|PS00671|PTHR10996|PTHR10996:SF18|SSF51735|SSF52283|SSF55021
ALIDE_RS04720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004017|IPR004113|IPR006094|IPR009051|IPR016164|IPR016166|IPR016167|IPR017896|IPR021817|IPR022153	4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|Cysteine-rich domain|FAD linked oxidase, N-terminal|FAD-binding, type 2|FAD-binding, type 2, subdomain 1|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Protein of unknown function DUF3400|Protein of unknown function DUF3683	GO:0003824|GO:0016491|GO:0016614|GO:0050660|GO:0051536|GO:0055114	G3DSA:1.10.1060.10|G3DSA:3.30.43.10|PF01565|PF02754|PF02913|PF11880|PF12447|PF13183|PTHR11748|SSF46548|SSF55103|SSF56176
ALIDE_RS04725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001310|IPR011146|IPR026026	HIT-like domain|Histidine triad (HIT) protein|Histidine triad hydrolase, Hint-type	GO:0003824	G3DSA:3.30.428.10|PF01230|PIRSF000714|PTHR23089|PTHR23089:SF13|SSF54197
ALIDE_RS04730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010376	Domain of unknown function DUF971		PF06155|PTHR35303|PTHR35303:SF1
ALIDE_RS04735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004033|IPR023576|IPR029063	S-adenosyl-L-methionine-dependent methyltransferase|UbiE/COQ5 methyltransferase|UbiE/COQ5 methyltransferase, conserved site	GO:0008168	G3DSA:3.40.50.150|MF_01813|PF01209|PS01183|PTHR10108|PTHR10108:SF864|SSF53335|TIGR01934
ALIDE_RS04740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007379|IPR032710	NTF2-like domain|Tim44-like domain		PF04280|SM00978|SSF54427
ALIDE_RS04750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004147|IPR010232|IPR011009	Probable protein kinase UbiB|Protein kinase-like domain|UbiB domain	GO:0006744	G3DSA:3.90.1200.10|MF_00414|PF03109|PTHR10566|PTHR10566:SF79|SSF56112|TIGR01982
ALIDE_RS04755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001734|IPR018212	Sodium/solute symporter|Sodium/solute symporter, conserved site	GO:0005215|GO:0006810|GO:0016020|GO:0055085	PF00474|PS00457|PTHR11819|PTHR11819:SF141
ALIDE_RS04765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007462	Protein of unknown function DUF502		PF04367|PTHR31876
ALIDE_RS04770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002312|IPR004115|IPR004364|IPR004365|IPR004524|IPR012340|IPR018150|IPR029351	Aminoacyl-tRNA synthetase, class II (D/K/N)|Aminoacyl-tRNA synthetase, class II (D/K/N)-like|Aspartate-tRNA ligase, bacterial/mitochondrial-type|Aspartyl/Asparaginyl-tRNA synthetase, class IIb|GAD domain|GAD-like domain|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	GO:0000166|GO:0003676|GO:0004812|GO:0005524|GO:0005737|GO:0006418|GO:0016874	G3DSA:2.40.50.140|G3DSA:3.30.1360.30|G3DSA:3.30.930.10|MF_00044|PF00152|PF01336|PF02938|PR01042|PTHR22594|PTHR22594:SF5|SSF50249|SSF55261|SSF55681|TIGR00459
ALIDE_RS04775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000086|IPR003564|IPR015797	Dihydroneopterin triphosphate diphosphatase|NUDIX hydrolase domain|NUDIX hydrolase domain-like	GO:0008828|GO:0016787|GO:0019177|GO:0046656	G3DSA:3.90.79.10|PF00293|PR01404|PTHR22769|PTHR22769:SF28|SSF55811
ALIDE_RS04780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005135	Endonuclease/exonuclease/phosphatase		G3DSA:3.60.10.10|PF03372|PTHR15822|PTHR15822:SF7|SSF56219
ALIDE_RS04785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025202|IPR030872	Cardiolipin synthase B|Phospholipase D-like domain	GO:0008808|GO:0032049	G3DSA:3.30.870.10|MF_01917|PF13091|PTHR21248|PTHR21248:SF5|SSF56024
ALIDE_RS04790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001474|IPR020602	GTP cyclohydrolase I|GTP cyclohydrolase I domain	GO:0003934|GO:0005737|GO:0046654	G3DSA:1.10.286.10|G3DSA:3.30.1130.10|PF01227|PTHR11109|SSF55620
ALIDE_RS04795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001792|IPR007024	Acylphosphatase-like domain|BLUF domain	GO:0009882|GO:0071949	PF04940|SM01034|SSF54975
ALIDE_RS04800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR22911|PTHR22911:SF61|SSF103481
ALIDE_RS04805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR004358	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF12974|PR00344|PTHR24423|PTHR24423:SF497|SM00387|SM00388|SSF47384|SSF53850|SSF55874
ALIDE_RS04810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000792|IPR001789|IPR011006|IPR011991|IPR016032	CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|PTHR26402|PTHR26402:SF613|SM00421|SM00448|SSF46894|SSF52172
ALIDE_RS04815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009056	Cytochrome c-like domain	GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF00034|PTHR35008|PTHR35008:SF4|SSF46626
ALIDE_RS04830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001123	Lysine-type exporter protein (LYSE/YGGA)	GO:0006865|GO:0016020	PF01810|PIRSF006324|PTHR30086|PTHR30086:SF3
ALIDE_RS04835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000120|IPR023631	Amidase|Amidase signature domain	GO:0016884	G3DSA:3.90.1300.10|PF01425|PTHR11895|SSF75304
ALIDE_RS04840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000914|IPR030678	Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain	GO:0043190|GO:0055085	G3DSA:3.10.105.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|PTHR30290|PTHR30290:SF14|SSF53850
ALIDE_RS04845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR013563|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0000166|GO:0005524|GO:0015833|GO:0016887	G3DSA:3.40.50.300|PF00005|PF08352|PS00211|PTHR24220|PTHR24220:SF493|SM00382|SSF52540
ALIDE_RS04850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR013563|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0000166|GO:0005524|GO:0015833|GO:0016887	G3DSA:3.40.50.300|PF00005|PF08352|PS00211|PTHR24220|PTHR24220:SF586|SM00382|SSF52540|TIGR01727
ALIDE_RS04855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30465|PTHR30465:SF10|SSF161098
ALIDE_RS04860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30465|PTHR30465:SF59|SSF161098
ALIDE_RS04865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017896|IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain		G3DSA:3.30.70.20|PF13237|PS00198|PTHR24960|PTHR24960:SF38|SSF54862
ALIDE_RS04870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001328|IPR018171	Peptidyl-tRNA hydrolase|Peptidyl-tRNA hydrolase, conserved site	GO:0004045	G3DSA:3.40.50.1470|MF_00083|PF01195|PS01196|PTHR17224|PTHR17224:SF1|SSF53178|TIGR00447
ALIDE_RS04875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001021|IPR011035|IPR020055|IPR020056|IPR020057|IPR029751	Ribosomal protein L25|Ribosomal protein L25, beta domain|Ribosomal protein L25, long-form|Ribosomal protein L25, short-form|Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain|Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain	GO:0003735|GO:0005840|GO:0006412|GO:0008097	G3DSA:2.170.120.20|G3DSA:2.40.240.10|MF_01334|MF_01336|PD012503|PF01386|PF14693|PTHR33284|SSF50715|TIGR00731
ALIDE_RS04880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000842|IPR005946|IPR029057|IPR029099	Phosphoribosyl pyrophosphate synthetase, conserved site|Phosphoribosyltransferase-like|Ribose-phosphate diphosphokinase|Ribose-phosphate pyrophosphokinase, N-terminal domain	GO:0000287|GO:0004749|GO:0009156|GO:0009165|GO:0044249	G3DSA:3.40.50.2020|MF_00583_B|PF13793|PF14572|PS00114|PTHR10210|SM01400|SSF53271|TIGR01251
ALIDE_RS04890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004424|IPR006204|IPR013750|IPR014721|IPR020568	4-diphosphocytidyl-2C-methyl-D-erythritol kinase|GHMP kinase N-terminal domain|GHMP kinase, C-terminal domain|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup	GO:0005524|GO:0016114|GO:0050515	G3DSA:3.30.230.10|G3DSA:3.30.70.890|MF_00061|PF00288|PF08544|PIRSF010376|PTHR20861|PTHR20861:SF2|SSF54211|SSF55060|TIGR00154
ALIDE_RS04895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004565|IPR029046	Lipoprotein localisation LolA/LolB/LppX|Outer membrane lipoprotein LolB	GO:0009279|GO:0015031	G3DSA:2.50.20.10|PF03550|SSF89392
ALIDE_RS04900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990|IPR019734	Tetratricopeptide repeat|Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.25.40.10|PF13432|PF14559|PTHR23083|PTHR23083:SF195|SM00028|SSF48452
ALIDE_RS04905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010663|IPR010979|IPR012319|IPR015886|IPR015887|IPR020629	DNA glycosylase/AP lyase, H2TH DNA-binding|DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site|Formamidopyrimidine-DNA glycosylase|Formamidopyrimidine-DNA glycosylase, catalytic domain|Ribosomal protein S13-like, H2TH|Zinc finger, FPG/IleRS-type	GO:0003676|GO:0003677|GO:0003684|GO:0003906|GO:0006281|GO:0006284|GO:0006289|GO:0008270|GO:0008534|GO:0016799	G3DSA:1.10.8.50|G3DSA:3.20.190.10|MF_00103|PF01149|PF06827|PF06831|PS01242|PTHR22993|PTHR22993:SF15|SM00898|SM01232|SSF46946|SSF57716|SSF81624|TIGR00577
ALIDE_RS04910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022812|IPR027417	Dynamin superfamily|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF00350|SSF52540
ALIDE_RS04915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000445|IPR003265|IPR003651|IPR005760|IPR011257|IPR015797|IPR023170|IPR029119	A/G-specific adenine glycosylase MutY|DNA glycosylase|Endonuclease III-like, iron-sulphur cluster loop motif|Helix-hairpin-helix motif|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain|MutY, C-terminal|NUDIX hydrolase domain-like	GO:0003677|GO:0003824|GO:0006281|GO:0006284|GO:0016787|GO:0019104|GO:0051539	G3DSA:1.10.1670.10|G3DSA:1.10.340.30|G3DSA:3.90.79.10|PF00633|PF00730|PF14815|PTHR10359|SM00478|SM00525|SSF48150|SSF55811|TIGR01084
ALIDE_RS04920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005337|IPR027417	P-loop containing nucleoside triphosphate hydrolase|RapZ-like family	GO:0005524	G3DSA:3.40.50.300|MF_00636|PF03668|PIRSF005052|PTHR30448|PTHR30448:SF0|SSF52540
ALIDE_RS04925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003395|IPR004604|IPR027417	DNA recombination/repair protein RecN|P-loop containing nucleoside triphosphate hydrolase|RecF/RecN/SMC, N-terminal	GO:0005524|GO:0006281|GO:0006310	G3DSA:3.40.50.300|PF02463|PIRSF003128|PTHR11059|SSF52540|TIGR00634
ALIDE_RS04930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002504|IPR016064|IPR017437|IPR017438	ATP-NAD kinase, PpnK-type, all-beta|Inorganic polyphosphate/ATP-NAD kinase, domain 1|NAD kinase|NAD kinase/diacylglycerol kinase-like domain	GO:0003951|GO:0006741|GO:0008152|GO:0019674	G3DSA:2.60.200.30|G3DSA:3.40.50.10330|MF_00361|PF01513|PTHR20275|SSF111331
ALIDE_RS04935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002571|IPR005104|IPR011991|IPR021153|IPR029016	GAF domain-like|Heat-inducible transcription repressor HrcA|Heat-inducible transcription repressor HrcA, C-terminal|Winged helix-turn-helix DNA-binding domain|Winged helix-turn-helix transcription repressor, HrcA DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|MF_00081|PF01628|PF03444|PIRSF005485|PTHR34824|SSF46785|SSF55781|TIGR00331
ALIDE_RS04940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein		G3DSA:3.50.30.40|PF03737|PTHR33254|PTHR33254:SF5|SSF89562
ALIDE_RS04945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006139|IPR006140|IPR016040	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain	GO:0008152|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF00389|PF02826|PTHR10996|SSF51735|SSF52283
ALIDE_RS04950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|SSF46785|SSF53850
ALIDE_RS04955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004838|IPR004839|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0009058|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PS00105|PTHR11751|PTHR11751:SF306|SSF53383
ALIDE_RS04960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30614|SSF161098|TIGR01726
ALIDE_RS04965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30614|SSF161098|TIGR01726
ALIDE_RS04970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR030679	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase	GO:0003333|GO:0005524|GO:0015424|GO:0016887	G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|PTHR24220|PTHR24220:SF447|SM00382|SSF52540
ALIDE_RS04975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001638|IPR018313	Solute-binding protein  family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site	GO:0005215|GO:0006810	G3DSA:3.40.190.10|PF00497|PS01039|PTHR18966|PTHR18966:SF191|SM00062|SSF53850
ALIDE_RS04980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001638	Solute-binding protein  family 3/N-terminal domain of MltF		G3DSA:3.40.190.10|PF00497|PTHR18966|PTHR18966:SF191|SM00062|SSF53850
ALIDE_RS04985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015942|IPR026286	Asp/Glu/hydantoin racemase|Maleate isomerase/Arylmalonate decarboxylase	GO:0006807|GO:0036361	PF01177|PIRSF015736|PTHR40267
ALIDE_RS04990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011053	Single hybrid motif		G3DSA:2.40.50.100|SSF51230
ALIDE_RS04995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003833|IPR010016|IPR024946|IPR029000	Arginine repressor C-terminal-like domain|Carboxyltransferase domain, subdomain C and D|Cyclophilin-like domain|KipI family		G3DSA:2.40.100.10|G3DSA:3.30.1360.40|PF02682|PTHR34698|PTHR34698:SF2|SM00796|SSF160467|SSF50891|TIGR00370
ALIDE_RS05000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003778|IPR029000	Carboxyltransferase domain, subdomain A and B|Cyclophilin-like domain		G3DSA:2.40.100.10|PF02626|PTHR18866|PTHR18866:SF74|SM00797|SSF50891|TIGR00724
ALIDE_RS05005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005501|IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel|Uncharacterised protein family UPF0271, LamB/YcsF	GO:0003824|GO:0005975	MF_00691|PF03746|PTHR30292|PTHR30292:SF0|SSF88713
ALIDE_RS05010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR001249|IPR011053	Acetyl-CoA biotin carboxyl carrier|Biotin/lipoyl attachment|Single hybrid motif	GO:0003989|GO:0006633|GO:0009317	G3DSA:2.40.50.100|PF00364|PR01071|PTHR23151|SSF51230
ALIDE_RS05015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004549|IPR005479|IPR005481|IPR005482|IPR011054|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Acetyl-CoA carboxylase, biotin carboxylase|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain|Rudiment single hybrid motif	GO:0003824|GO:0005524|GO:0016874	G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF02785|PF02786|PS00866|PS00867|PTHR18866|SM00878|SSF51246|SSF52440|SSF56059|TIGR00514
ALIDE_RS05020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007730	Sporulation-related domain	GO:0042834	G3DSA:3.30.70.1070|PF05036|SSF110997
ALIDE_RS05025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021719	Proteinase inhibitor I78		PF11720
ALIDE_RS05030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004559|IPR006638|IPR007197|IPR010723|IPR023404	Coproporphyrinogen III oxidase, oxygen-independent related|Elongator protein 3/MiaB/NifB|HemN, C-terminal|Radical SAM|Radical SAM, alpha/beta horseshoe	GO:0003824|GO:0004109|GO:0005737|GO:0006779|GO:0051536|GO:0055114	G3DSA:3.80.30.20|PF04055|PF06969|PTHR13932|PTHR13932:SF7|SM00729|SSF102114|TIGR00539
ALIDE_RS05035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002637|IPR020922|IPR029001	Ham1-like protein|Inosine triphosphate pyrophosphatase-like|Non-canonical purine NTP pyrophosphatase	GO:0009143|GO:0016787|GO:0017111	G3DSA:3.90.950.10|MF_01405|PF01725|PTHR11067|PTHR11067:SF9|SSF52972|TIGR00042
ALIDE_RS05040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001247|IPR002381|IPR015847|IPR018336|IPR020568|IPR027408	Exoribonuclease, phosphorolytic domain 1|Exoribonuclease, phosphorolytic domain 2|PNPase/RNase PH domain|Ribonuclease PH, conserved site|Ribonuclease phosphorolytic, bacterial-type|Ribosomal protein S5 domain 2-type fold	GO:0000049|GO:0004549|GO:0008033	G3DSA:3.30.230.70|MF_00564|PF01138|PF03725|PS01277|PTHR11953|PTHR11953:SF0|SSF54211|SSF55666|TIGR01966
ALIDE_RS05045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001932|IPR015655	PPM-type phosphatase domain|Protein phosphatase 2C family	GO:0003824|GO:0004722|GO:0006470	G3DSA:3.60.40.10|PF13672|PTHR13832|PTHR13832:SF278|SM00331|SM00332|SSF81606
ALIDE_RS05050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000719|IPR008271|IPR011009	Protein kinase domain|Protein kinase-like domain|Serine/threonine-protein kinase, active site	GO:0004672|GO:0005524|GO:0006468	G3DSA:1.10.510.10|G3DSA:3.30.200.20|PF00069|PS00108|PTHR24362|SM00220|SSF56112
ALIDE_RS05055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005229|IPR013527|IPR013551	Conserved hypothetical protein CHP00255|Domain of unknown function DUF1732|YicC-like, N-terminal		PF03755|PF08340|PTHR30636|TIGR00255
ALIDE_RS05060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028203	Photosynthesis system II assembly factor Ycf48/Hcf136-like domain		G3DSA:2.130.10.140|PF14870|SSF110296
ALIDE_RS05075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006949|IPR011749	Baseplate protein J-like|Conserved hypothetical protein CHP02243		PF04865|TIGR02243
ALIDE_RS05080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007048	GpW/Gp25/anti-adapter protein IraD		G3DSA:3.10.450.40|PF04965|PTHR35862|PTHR35862:SF2|SSF160719
ALIDE_RS05090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006531	Gp5 N-terminal		G3DSA:2.40.50.230|SSF69255
ALIDE_RS05110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025295	Domain of unknown function DUF4157		PF13699
ALIDE_RS05120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025295	Domain of unknown function DUF4157		PF13699
ALIDE_RS05125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR003959|IPR027417	AAA+ ATPase domain|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase	GO:0005524	G3DSA:3.40.50.300|PF00004|PTHR23073|PTHR23073:SF24|SM00382|SSF52540
ALIDE_RS05130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025351	Protein of unknown function DUF4255		PF14065
ALIDE_RS05140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010667|IPR011747	Bacteriophage T4, Gp19, tail tube|Conserved hypothetical protein CHP02241	GO:0005198	PF06841|PTHR38009|PTHR38009:SF1|TIGR02241
ALIDE_RS05145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007067	Tail sheath protein		PF04984|PTHR35861|PTHR35861:SF1
ALIDE_RS05150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008145|IPR017665|IPR020590|IPR027417	Guanylate kinase|Guanylate kinase, conserved site|Guanylate kinase/L-type calcium channel beta subunit|P-loop containing nucleoside triphosphate hydrolase	GO:0004385|GO:0006163	G3DSA:3.30.63.10|G3DSA:3.40.50.300|MF_00328|PF00625|PS00856|PTHR23117|PTHR23117:SF13|SM00072|SSF52540|TIGR03263
ALIDE_RS05155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003716|IPR006110|IPR012293	DNA-directed RNA polymerase, omega subunit|RNA polymerase subunit, RPB6/omega|RNA polymerase, subunit omega/K/RPB6	GO:0003677|GO:0003899|GO:0006351	G3DSA:3.90.940.10|MF_00366|PF01192|PTHR34476|SM01409|SSF63562|TIGR00690
ALIDE_RS05160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002912|IPR003607|IPR004095|IPR004811|IPR007685|IPR012675|IPR012676	ACT domain|Beta-grasp domain|HD/PDEase domain|RelA/SpoT|RelA/SpoT family|TGS|TGS-like	GO:0008152|GO:0015969|GO:0016597	G3DSA:3.10.20.30|G3DSA:3.30.460.10|G3DSA:3.30.70.260|PF02824|PF04607|PF13291|PF13328|PTHR21262|PTHR21262:SF0|SM00471|SM00954|SSF109604|SSF55021|SSF81271|SSF81301|TIGR00691
ALIDE_RS05165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001437|IPR006358|IPR018151|IPR022691|IPR023459|IPR028624	Transcription elongation factor GreA/GreB|Transcription elongation factor GreA/GreB family|Transcription elongation factor GreB|Transcription elongation factor, GreA/GreB, C-terminal|Transcription elongation factor, GreA/GreB, N-terminal|Transcription elongation factor, GreA/GreB, conserved site	GO:0003677|GO:0032784|GO:0070063	G3DSA:1.10.287.180|G3DSA:3.10.50.30|MF_00105|MF_00930|PF01272|PF03449|PIRSF006092|PS00829|PS00830|PTHR30437|PTHR30437:SF6|SSF46557|SSF54534|TIGR01461
ALIDE_RS05180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000589|IPR005290|IPR009068	Ribosomal protein S15|Ribosomal protein S15, bacterial-type|S15/NS1, RNA-binding	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:1.10.287.10|MF_01343_B|PD157043|PF00312|PS00362|PTHR23321|SM01387|SSF47060|TIGR00952
ALIDE_RS05185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001247|IPR003029|IPR004087|IPR004088|IPR012162|IPR012340|IPR015847|IPR015848|IPR020568|IPR022967|IPR027408	Exoribonuclease, phosphorolytic domain 1|Exoribonuclease, phosphorolytic domain 2|K Homology domain|K Homology domain, type 1|Nucleic acid-binding, OB-fold|PNPase/RNase PH domain|Polyribonucleotide nucleotidyltransferase|Polyribonucleotide nucleotidyltransferase, RNA-binding domain|RNA-binding domain, S1|Ribosomal protein S5 domain 2-type fold|S1 domain	GO:0000175|GO:0003676|GO:0003723|GO:0004654|GO:0006396|GO:0006402	G3DSA:1.10.10.400|G3DSA:2.40.50.140|G3DSA:3.30.1370.10|G3DSA:3.30.230.70|MF_01595|PF00013|PF00575|PF01138|PF03725|PF03726|PIRSF005499|PTHR11252|PTHR11252:SF0|SM00316|SM00322|SSF46915|SSF50249|SSF54211|SSF54791|SSF55666|TIGR03591
ALIDE_RS05190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR011032|IPR013149|IPR013154|IPR014189|IPR016040|IPR020843	Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain|Quinone oxidoreductase PIG3	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PTHR11695|PTHR11695:SF610|SM00829|SSF50129|SSF51735|TIGR02824
ALIDE_RS05195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000652|IPR013785|IPR020861|IPR022896	Aldolase-type TIM barrel|Triosephosphate isomerase|Triosephosphate isomerase, active site|Triosephosphate isomerase, bacterial/eukaryotic	GO:0003824|GO:0004807|GO:0006096|GO:0008152	G3DSA:3.20.20.70|MF_00147_B|PF00121|PS00171|PTHR21139|SSF51351|TIGR00419
ALIDE_RS05200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004692	Preprotein translocase SecG subunit	GO:0009306|GO:0015450|GO:0016021	PF03840|PR01651|PTHR34182|TIGR00810
ALIDE_RS05210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000440|IPR023043	NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid|NADH:ubiquinone/plastoquinone oxidoreductase, chain 3	GO:0008137|GO:0016651|GO:0055114	MF_01394|PF00507|PTHR11058|PTHR11058:SF10
ALIDE_RS05215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006137|IPR006138	NADH-ubiquinone oxidoreductase, 20 Kd subunit|NADH:ubiquinone oxidoreductase-like, 20kDa subunit	GO:0008137|GO:0048038|GO:0051536|GO:0051539|GO:0055114	G3DSA:3.40.50.700|MF_01356|PF01058|PS01150|PTHR11995|PTHR11995:SF19|SSF56770|TIGR01957
ALIDE_RS05220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001268|IPR010218|IPR020396	NADH dehydrogenase, subunit C|NADH:ubiquinone oxidoreductase, 30kDa subunit|NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site	GO:0008137|GO:0016651|GO:0055114	MF_01357|PD001581|PF00329|PS00542|PTHR10884|SSF143243|TIGR01961
ALIDE_RS05225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001135|IPR014029|IPR022885|IPR029014	NAD(P)H-quinone oxidoreductase subunit D/H|NADH-quinone oxidoreductase, subunit D|NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site|NiFe hydrogenase-like	GO:0016651|GO:0048038|GO:0051287|GO:0055114	G3DSA:1.10.645.10|MF_01358|PF00346|PS00535|PTHR11993|PTHR11993:SF10|SSF56762|TIGR01962
ALIDE_RS05230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002023|IPR012336	NADH-quinone oxidoreductase subunit E-like|Thioredoxin-like fold	GO:0016491|GO:0055114	G3DSA:3.40.30.10|PF01257|PIRSF000216|PS01099|PTHR10371|PTHR10371:SF3|SSF52833|TIGR01958
ALIDE_RS05235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001949|IPR011537|IPR011538|IPR019554|IPR019575	NADH ubiquinone oxidoreductase, F subunit|NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain|NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain|NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site|Soluble ligand binding domain	GO:0008137|GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114	PF01512|PF10531|PF10589|PS00645|PTHR11780|PTHR11780:SF10|SM00928|SSF140490|SSF142019|SSF142984|TIGR01959
ALIDE_RS05240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000283|IPR001041|IPR006656|IPR010228|IPR012675|IPR019574	2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain|Molybdopterin oxidoreductase|NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site|NADH:ubiquinone oxidoreductase, subunit G|NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding	GO:0008137|GO:0009055|GO:0016020|GO:0016491|GO:0016651|GO:0042773|GO:0051536|GO:0055114	G3DSA:3.10.20.30|G3DSA:3.40.50.740|PF00384|PF10588|PF13510|PS00641|PS00642|PS00643|PTHR11615|PTHR11615:SF38|SM00929|SSF53706|SSF54292|SSF54862|TIGR01973
ALIDE_RS05245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001694|IPR018086	NADH:ubiquinone oxidoreductase, subunit 1, conserved site|NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	GO:0016020|GO:0055114	MF_01350|PF00146|PS00667|PS00668|PTHR11432|PTHR11432:SF3
ALIDE_RS05250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010226|IPR017896|IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|NADH-quinone oxidoreductase, chain I	GO:0016020|GO:0016651|GO:0051539|GO:0055114	G3DSA:1.10.1060.10|MF_01351|PF12838|PS00198|PTHR10849|PTHR10849:SF20|SSF54862|TIGR01971
ALIDE_RS05255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001457	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	GO:0008137|GO:0055114	PF00499|PTHR33269|PTHR33269:SF1
ALIDE_RS05260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001133	NADH-ubiquinone oxidoreductase chain 4L/K	GO:0016651|GO:0042773|GO:0055114	MF_01456|PF00420|PTHR11434
ALIDE_RS05265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001516|IPR001750|IPR003945|IPR018393	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal|NADH-plastoquinone oxidoreductase, chain 5|NADH-plastoquinone oxidoreductase, chain 5 subgroup|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	GO:0008137|GO:0042773|GO:0055114	PF00361|PF00662|PR01434|PR01435|PTHR22773|PTHR22773:SF50|TIGR01974
ALIDE_RS05270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001750|IPR003918|IPR010227	NADH-quinone oxidoreductase, chain M/4|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit|NADH:ubiquinone oxidoreductase	GO:0008137|GO:0042773|GO:0055114	PF00361|PR01437|PTHR22773|PTHR22773:SF40|TIGR01972
ALIDE_RS05275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001750|IPR010096	NAD(P)H-quinone oxidoreductase, subunit N/subunit 2|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	GO:0008137|GO:0042773|GO:0055114	MF_00445|PF00361|PTHR22773|PTHR22773:SF41|TIGR01770
ALIDE_RS05280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016768	Uncharacterised conserved protein UCP019883, membrane		PF10993|PIRSF019883
ALIDE_RS05285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009562	Protein of unknown function DUF1178		PF06676|PIRSF032131
ALIDE_RS05295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006095|IPR006096|IPR006097|IPR014362|IPR016040	Glutamate dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase|Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal|Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain|NAD(P)-binding domain	GO:0006520|GO:0016491|GO:0016639|GO:0055114	G3DSA:1.10.285.10|G3DSA:3.40.192.10|G3DSA:3.40.50.720|PF00208|PF02812|PIRSF000185|PR00082|PS00074|PTHR11606|PTHR11606:SF4|SM00839|SSF51735|SSF53223
ALIDE_RS05300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002099|IPR003594|IPR013507|IPR014721|IPR014762|IPR014790|IPR020568|IPR020667	DNA mismatch repair protein family|DNA mismatch repair protein, C-terminal|DNA mismatch repair protein, MutL|DNA mismatch repair, conserved site|Histidine kinase-like ATPase, C-terminal domain|MutL, C-terminal, dimerisation|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup	GO:0005524|GO:0006298|GO:0030983	G3DSA:3.30.230.10|G3DSA:3.30.565.10|MF_00149|PF01119|PF08676|PF13589|PS00058|PTHR10073|SM00853|SM01340|SSF118116|SSF54211|SSF55874|TIGR00585
ALIDE_RS05305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008816	Glycine zipper 2TM domain	GO:0019867	PF05433
ALIDE_RS05310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032816|IPR032818	DedA family|SNARE associated Golgi protein		PF09335|PTHR30353|PTHR30353:SF0
ALIDE_RS05315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006680|IPR011059|IPR014311|IPR032466	Amidohydrolase-related|Guanine deaminase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain	GO:0006147|GO:0008270|GO:0008892|GO:0016787|GO:0016810	G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF01979|PTHR11271|PTHR11271:SF6|SSF51338|SSF51556|TIGR02967
ALIDE_RS05320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006043|IPR026033|IPR029940	AzgA purine transporter|Purine permease PbuG-like|Xanthine/uracil/vitamin C permease	GO:0005215|GO:0005345|GO:0006810|GO:0006863|GO:0016020|GO:0055085	PF00860|PIRSF005353|PTHR11119|PTHR11119:SF9
ALIDE_RS05325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30118|PTHR30118:SF4|SSF46785|SSF53850
ALIDE_RS05330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000674|IPR008274|IPR014309	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding|Xanthine dehydrogenase, molybdopterin binding subunit	GO:0016491|GO:0030151|GO:0055114	G3DSA:3.30.365.10|G3DSA:3.90.1170.50|PF01315|PF02738|PTHR11908|PTHR11908:SF66|SM01008|SSF54665|SSF56003|TIGR02965
ALIDE_RS05335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR002346|IPR002888|IPR005107|IPR006058|IPR012175|IPR012675|IPR014307|IPR016166|IPR016167|IPR016169	2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain|CO dehydrogenase flavoprotein, C-terminal|CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD-binding, type 2|FAD-binding, type 2, subdomain 1|Molybdopterin dehydrogenase, FAD-binding|Xanthine dehydrogenase, small subunit|Xanthine dehydrogenase, small subunit, bacteria|[2Fe-2S]-binding	GO:0003824|GO:0004854|GO:0004855|GO:0009055|GO:0016491|GO:0016614|GO:0046872|GO:0050660|GO:0051536|GO:0051537|GO:0055114	G3DSA:1.10.150.120|G3DSA:3.10.20.30|G3DSA:3.30.390.50|G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF00941|PF01799|PF03450|PIRSF036557|PS00197|PTHR11908|SM01092|SSF47741|SSF54292|SSF55447|SSF56176|TIGR02963
ALIDE_RS05340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011051|IPR013096|IPR014710	Cupin 2, conserved barrel|RmlC-like cupin domain|RmlC-like jelly roll fold		G3DSA:2.60.120.10|PF07883|PTHR37694|SSF51182
ALIDE_RS05345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002508|IPR021731	AMIN domain|Cell wall hydrolase/autolysin, catalytic	GO:0008745|GO:0009253	G3DSA:3.40.630.40|PF01520|PF11741|PTHR30404|PTHR30404:SF0|SM00646|SSF53187
ALIDE_RS05350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003442|IPR027417	P-loop containing nucleoside triphosphate hydrolase|tRNA threonylcarbamoyl adenosine modification protein TsaE	GO:0002949	G3DSA:3.40.50.300|PF02367|PTHR33540|PTHR33540:SF2|SSF52540|TIGR00150
ALIDE_RS05355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004453|IPR013542|IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Domain of unknown function DUF1730|Epoxyqueuosine reductase QueG	GO:0008033|GO:0008616|GO:0016491	G3DSA:3.30.70.20|MF_00916|PF08331|PF13484|PS00198|PTHR30002|PTHR30002:SF4|SSF54862|TIGR00276
ALIDE_RS05360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004776	Auxin efflux carrier	GO:0016021|GO:0055085	PF03547|PTHR31752|PTHR31752:SF13
ALIDE_RS05365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS05370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR004107|IPR010998|IPR011010|IPR011932|IPR013762|IPR023009|IPR023109	DNA breaking-rejoining enzyme, catalytic core|Integrase, Lambda-type, N-terminal|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal|Tyrosine recombinase XerC/XerD|Tyrosine recombinase XerD	GO:0003677|GO:0006310|GO:0009009|GO:0015074	G3DSA:1.10.150.130|G3DSA:1.10.443.10|MF_01807|MF_01808|PF00589|PF02899|PTHR30349|PTHR30349:SF5|SSF47823|SSF56349|TIGR02225
ALIDE_RS05380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32
ALIDE_RS05385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001633|IPR013976|IPR014408	EAL domain|Metal-dependent hydrolase HDOD|Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing		G3DSA:1.10.3150.10|G3DSA:3.20.20.450|PF00563|PF08668|PIRSF003180|PTHR33525|PTHR33525:SF4|SM00052|SSF109604|SSF141868
ALIDE_RS05390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001633|IPR013976|IPR014408	EAL domain|Metal-dependent hydrolase HDOD|Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing		G3DSA:1.10.3150.10|G3DSA:3.20.20.450|PF00563|PF08668|PIRSF003180|PTHR33525|PTHR33525:SF4|SM00052|SSF109604|SSF141868
ALIDE_RS05395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007402|IPR009078|IPR011197	Ferritin-like superfamily|Protein of unknown function DUF455|Uncharacterised conserved protein UCP012318		PF04305|PIRSF012318|PTHR21496|PTHR21496:SF10|SSF47240
ALIDE_RS05400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001451|IPR011004	Hexapeptide repeat|Trimeric LpxA-like		G3DSA:2.160.10.10|PF00132|PTHR13061|SSF51161
ALIDE_RS05405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000397|IPR016153|IPR016154|IPR023212	Heat shock protein Hsp33|Heat shock protein Hsp33, C-terminal|Heat shock protein Hsp33, N-terminal|Heat shock protein Hsp33, helix hairpin bin domain	GO:0005737|GO:0006457|GO:0051082	G3DSA:1.10.287.480|G3DSA:3.55.30.10|G3DSA:3.90.1280.10|PF01430|PIRSF005261|PTHR30111|PTHR30111:SF1|SSF118352|SSF64397
ALIDE_RS05410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001320|IPR001638|IPR018313	Ionotropic glutamate receptor|Solute-binding protein  family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site	GO:0004970|GO:0005215|GO:0006810|GO:0016020	G3DSA:3.40.190.10|PF00497|PS01039|PTHR18966|PTHR18966:SF152|SM00062|SM00079|SSF53850
ALIDE_RS05415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30133|PTHR30133:SF3|SSF161098|TIGR01726
ALIDE_RS05420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30450|PTHR30450:SF4|SSF161098|TIGR01726
ALIDE_RS05425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR030679	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase	GO:0003333|GO:0005524|GO:0015424|GO:0016887	G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|PTHR24220|PTHR24220:SF347|SM00382|SSF52540
ALIDE_RS05430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007060|IPR023081	Cell division protein FtsB|Septum formation initiator FtsL/DivIC	GO:0007049	MF_00599|PF04977|PTHR37485|PTHR37485:SF1
ALIDE_RS05435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000941|IPR020809|IPR020810|IPR020811|IPR029017|IPR029065	Enolase|Enolase C-terminal domain-like|Enolase N-terminal domain-like|Enolase, C-terminal TIM barrel domain|Enolase, N-terminal|Enolase, conserved site	GO:0000015|GO:0000287|GO:0004634|GO:0006096	G3DSA:3.20.20.120|G3DSA:3.30.390.10|MF_00318|PF00113|PF03952|PIRSF001400|PR00148|PS00164|PTHR11902|SM01192|SM01193|SSF51604|SSF54826|TIGR01060
ALIDE_RS05440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010753|IPR011008	Dimeric alpha-beta barrel|Domain of unknown function DUF1330		G3DSA:3.30.70.900|PF07045|PTHR41521|SSF54909
ALIDE_RS05445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006218|IPR006269|IPR013785	3-deoxy-8-phosphooctulonate synthase|Aldolase-type TIM barrel|DAHP synthetase I/KDSA	GO:0003824|GO:0005737|GO:0008152|GO:0008676|GO:0009058	G3DSA:3.20.20.70|MF_00056|PF00793|PTHR21057|PTHR21057:SF2|SSF51569|TIGR01362
ALIDE_RS05450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004468|IPR017456|IPR017926|IPR027417|IPR029062	CTP synthase|CTP synthase, N-terminal|Class I glutamine amidotransferase-like|Glutamine amidotransferase|P-loop containing nucleoside triphosphate hydrolase	GO:0003883|GO:0006221	G3DSA:3.40.50.300|G3DSA:3.40.50.880|MF_01227|PF00117|PF06418|PTHR11550|SSF52317|SSF52540|TIGR00337
ALIDE_RS05455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003382|IPR005252|IPR007085	Coenzyme A biosynthesis bifunctional protein CoaBC|DNA/pantothenate metabolism flavoprotein, C-terminal|Flavoprotein	GO:0003824|GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941	G3DSA:3.40.50.10300|G3DSA:3.40.50.1950|PF02441|PF04127|PTHR14359|PTHR14359:SF20|SSF102645|SSF52507|TIGR00521
ALIDE_RS05465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008180|IPR008181|IPR029054	Deoxyuridine triphosphate nucleotidohydrolase|Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase|dUTPase-like	GO:0004170|GO:0016787|GO:0046080	G3DSA:2.70.40.10|MF_00116|PF00692|PTHR11241|SSF51283|TIGR00576
ALIDE_RS05470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:3.10.50.40|SSF54534
ALIDE_RS05475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003347	JmjC domain		G3DSA:2.60.120.650|PF08007|PTHR13096|SM00558|SSF51197
ALIDE_RS05490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010653	NlpB/DapX lipoprotein		PF06804
ALIDE_RS05495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002220|IPR005263|IPR013785|IPR020625	4-hydroxy-tetrahydrodipicolinate synthase, DapA|Aldolase-type TIM barrel|DapA-like|Schiff base-forming aldolase, active site	GO:0003824|GO:0008152|GO:0008840|GO:0009089|GO:0016829	G3DSA:3.20.20.70|MF_00418|PF00701|PIRSF001365|PR00146|PS00666|PTHR12128|PTHR12128:SF34|SM01130|SSF51569|TIGR00674
ALIDE_RS05500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF13489|SSF53335
ALIDE_RS05505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR11360|PTHR11360:SF115|SSF103473
ALIDE_RS05510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001241|IPR002288|IPR003594|IPR005737|IPR006171|IPR013506|IPR013759|IPR013760|IPR014721|IPR018522|IPR020568	DNA gyrase B subunit, C-terminal|DNA topoisomerase IV, subunit B, Gram-negative|DNA topoisomerase, type IIA|DNA topoisomerase, type IIA, central domain|DNA topoisomerase, type IIA, conserved site|DNA topoisomerase, type IIA, subunit B, domain 2|DNA topoisomerase, type IIA-like domain|Histidine kinase-like ATPase, C-terminal domain|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Toprim domain	GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265	G3DSA:3.30.230.10|G3DSA:3.30.565.10|G3DSA:3.40.50.670|MF_00938|PF00204|PF00986|PF01751|PF02518|PR00418|PR01098|PS00177|PTHR10169|PTHR10169:SF45|SM00387|SM00433|SSF54211|SSF55874|SSF56719
ALIDE_RS05515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002205|IPR005742|IPR006691|IPR013757|IPR013758|IPR013760	DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel|DNA topoisomerase IV, subunit A, Gram-negative|DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta|DNA topoisomerase, type IIA, subunit A/C-terminal|DNA topoisomerase, type IIA-like domain|Type IIA DNA topoisomerase subunit A, alpha-helical domain	GO:0003677|GO:0003916|GO:0003918|GO:0005524|GO:0005694|GO:0006259|GO:0006265	G3DSA:1.10.268.10|G3DSA:2.120.10.90|G3DSA:3.90.199.10|MF_00936|PF00521|PF03989|PTHR10169|PTHR10169:SF30|SM00434|SSF101904|SSF56719|TIGR01062
ALIDE_RS05520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006175|IPR013813	Endoribonuclease L-PSP/chorismate mutase-like|YjgF/YER057c/UK114 family		G3DSA:3.30.1330.40|PF14588|PTHR11803|PTHR11803:SF2|SSF55298
ALIDE_RS05525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001279|IPR004477|IPR004797|IPR025405	ComEC/Rec2-related protein|Competence protein ComEC/Rec2|Domain of unknown function DUF4131|Metallo-beta-lactamase	GO:0016021|GO:0030420	G3DSA:3.60.15.10|PF00753|PF03772|PF13567|PTHR30619|PTHR30619:SF2|SM00849|SSF56281|TIGR00360|TIGR00361
ALIDE_RS05530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016160|IPR016161|IPR016162|IPR016163	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PTHR11699|SSF53720
ALIDE_RS05535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001763	Rhodanese-like domain		G3DSA:3.40.250.10|PF00581|PTHR11364|PTHR11364:SF0|SM00450|SSF52821
ALIDE_RS05540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PTHR22911|SSF103481
ALIDE_RS05545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015879|IPR017941	Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain|Rieske [2Fe-2S] iron-sulphur domain	GO:0005506|GO:0016491|GO:0016708|GO:0019439|GO:0051537|GO:0055114	G3DSA:2.102.10.10|G3DSA:3.90.380.10|PF00355|PF00848|PTHR21266|PTHR21266:SF2|SSF50022|SSF55961
ALIDE_RS05550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003761	Exonuclease VII, small subunit	GO:0006308|GO:0008855|GO:0009318	G3DSA:1.10.287.1040|MF_00337|PD028235|PF02609|PIRSF006488|PTHR34137|SSF116842|TIGR01280
ALIDE_RS05555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000092|IPR008949|IPR017446	Isoprenoid synthase domain|Polyprenyl synthetase|Polyprenyl synthetase-related	GO:0008299	G3DSA:1.10.600.10|PF00348|PS00444|PS00723|PTHR12001|PTHR12001:SF23|SSF48576
ALIDE_RS05560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005474|IPR005475|IPR005477|IPR009014|IPR020826|IPR029061|IPR033247|IPR033248	Deoxyxylulose-5-phosphate synthase|Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase binding site|Transketolase family|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase-like, pyrimidine-binding domain	GO:0003824|GO:0008152|GO:0008661|GO:0016114	G3DSA:3.40.50.920|G3DSA:3.40.50.970|MF_00315|PF02779|PF02780|PF13292|PS00801|PS00802|PTHR11624|PTHR11624:SF20|SM00861|SSF52518|SSF52922|TIGR00204
ALIDE_RS05565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018389|IPR026289	Solute binding protein, mannitol/chloroaromatic system-like|TRAP transporter solute receptor DctP/TeaA	GO:0006810|GO:0030288	PF03480|PIRSF039026|PTHR33376|PTHR33376:SF5
ALIDE_RS05570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001650|IPR009351|IPR011545|IPR013701|IPR014001|IPR027417	DEAD/DEAH box helicase domain|DEAD/H associated|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Protein of unknown function DUF1006	GO:0003676|GO:0005524|GO:0016818	G3DSA:3.40.50.300|PF00270|PF00271|PF06224|PF08494|PTHR24031|PTHR24031:SF122|SM00487|SM00490|SSF52540
ALIDE_RS05575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010656	TRAP C4-dicarboxylate transport system permease DctM subunit		PF06808|PTHR33362|PTHR33362:SF7
ALIDE_RS05580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007387	Tripartite ATP-independent periplasmic transporter, DctQ component		PF04290|PTHR35011|PTHR35011:SF4
ALIDE_RS05585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000760|IPR020550|IPR020583|IPR022337	Inositol monophosphatase|Inositol monophosphatase, SuhB|Inositol monophosphatase, conserved site|Inositol monophosphatase, metal-binding site	GO:0008934|GO:0046854|GO:0046855	G3DSA:3.30.540.10|G3DSA:3.40.190.80|PF00459|PR00377|PR01959|PS00629|PS00630|PTHR20854|PTHR20854:SF4|SSF56655
ALIDE_RS05590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001537|IPR004384|IPR029026|IPR029028	Alpha/beta knot methyltransferases|RNA methyltransferase TrmH, group 1|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type	GO:0003723|GO:0006396|GO:0008173	G3DSA:3.40.1280.10|PF00588|PIRSF004808|PTHR12029|SSF75217|TIGR00050
ALIDE_RS05595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001451|IPR005881|IPR011004	Hexapeptide repeat|Serine O-acetyltransferase|Trimeric LpxA-like	GO:0005737|GO:0006535|GO:0009001	G3DSA:1.10.3130.10|G3DSA:2.160.10.10|PF00132|PTHR23416|PTHR23416:SF55|SSF51161|TIGR01172
ALIDE_RS05600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000415|IPR029479	Nitroreductase|Nitroreductase-like	GO:0016491	G3DSA:3.40.109.10|PF00881|PTHR23026|PTHR23026:SF90|SSF55469
ALIDE_RS05605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR002328|IPR011032|IPR013149|IPR013154|IPR016040|IPR020843	Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS00059|PTHR11695|PTHR11695:SF281|SM00829|SSF50129|SSF51735
ALIDE_RS05610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001453|IPR008284	MoaB/Mog domain|Molybdenum cofactor biosynthesis, conserved site	GO:0006777	G3DSA:3.40.980.10|PF00994|PS01078|PTHR10192|SM00852|SSF53218|TIGR00177
ALIDE_RS05615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006839|IPR023153	PSPTO4464-like domain|Ribosome-associated, YjgA		G3DSA:1.10.60.30|PF04751|PTHR38101|PTHR38101:SF1|SSF158710
ALIDE_RS05620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002510	Metalloprotease TldD/PmbA	GO:0006508|GO:0008237	PF01523|PTHR30624|PTHR30624:SF1|SSF111283
ALIDE_RS05625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023346	Lysozyme-like domain		SSF53955
ALIDE_RS05655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006197|IPR011991|IPR015927|IPR019759|IPR028360	Peptidase S24, LexA-like|Peptidase S24/S26, beta-ribbon domain|Peptidase S24/S26A/S26B|Peptidase S24/S26A/S26B/S26C|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:2.10.109.10|PF00717|PR00726|PTHR33516|SSF46785|SSF51306
ALIDE_RS05660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS05670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007791|IPR025266|IPR028932|IPR029024	Co-chaperone DjlA, N-terminal|TerB, N-terminal|TerB-C domain|TerB-like		G3DSA:1.10.3680.10|PF05099|PF13208|PF15615|SSF158682
ALIDE_RS05675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021228|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Protein of unknown function DUF2791		G3DSA:3.40.50.300|PF10923|SSF52540
ALIDE_RS05680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001650|IPR011545|IPR014001|IPR027417	DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0003676|GO:0005524	G3DSA:3.40.50.300|PF00270|PF00271|PTHR24031|PTHR24031:SF122|SM00487|SM00490|SSF52540
ALIDE_RS05685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004646|IPR004647|IPR011167	Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain|Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain|Iron-dependent fumarate hydratase	GO:0004333|GO:0006091|GO:0016829|GO:0016836	G3DSA:3.20.130.10|PF05681|PF05683|PIRSF001394|PTHR30389|PTHR30389:SF1|SSF117457|TIGR00722|TIGR00723
ALIDE_RS05690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000362|IPR005677|IPR008948|IPR018951|IPR020557|IPR022761|IPR024083	Fumarase C, C-terminal|Fumarase/histidase, N-terminal|Fumarate hydratase, class II|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like	GO:0003824|GO:0004333|GO:0006099|GO:0006106|GO:0016829|GO:0045239	G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|MF_00743|PF00206|PF10415|PR00149|PS00163|PTHR11444|PTHR11444:SF1|SSF48557|TIGR00979
ALIDE_RS05695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000595|IPR011991|IPR012318|IPR014710|IPR018490	Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|PTHR24567|PTHR24567:SF30|SM00100|SM00419|SSF46785|SSF51206
ALIDE_RS05700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007210	ABC-type glycine betaine transport system, substrate-binding domain	GO:0005215|GO:0006810	G3DSA:3.40.190.10|G3DSA:3.40.190.100|PF04069|SSF53850
ALIDE_RS05705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30177|PTHR30177:SF2|SSF161098
ALIDE_RS05710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644|IPR003439|IPR003593|IPR005892|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|CBS domain|Glycine betaine transport ATP-binding subunit|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016020|GO:0016887|GO:0031460	G3DSA:3.10.580.10|G3DSA:3.40.50.300|PF00005|PF00571|PS00211|PTHR24220|PTHR24220:SF374|SM00382|SSF52540|SSF54631|TIGR01186
ALIDE_RS05715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR011904|IPR020845|IPR025110|IPR032387	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetate-CoA ligase|Acetyl-coenzyme A synthetase, N-terminal domain	GO:0003824|GO:0003987|GO:0008152|GO:0016208|GO:0019427	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|MF_01123|PF00501|PF13193|PF16177|PS00455|PTHR24095|SSF56801|TIGR02188
ALIDE_RS05720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002035|IPR024163	Aerotolerance regulator, N-terminal|von Willebrand factor, type A		G3DSA:3.40.50.410|PF00092|PF07584|PF13519|PTHR22550|PTHR22550:SF8|SM00327|SSF53300
ALIDE_RS05725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002881	Domain of unknown function DUF58		PF01882|PTHR33608
ALIDE_RS05730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011703|IPR016366|IPR027417	ATPase chaperone, AAA-type, MoxR, predicted|ATPase, AAA-3|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:1.10.8.300|G3DSA:3.40.50.300|PF07726|PIRSF002849|PTHR11603|PTHR11603:SF148|SSF52540
ALIDE_RS05735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001940|IPR009003	Peptidase S1, PA clan|Peptidase S1C	GO:0004252|GO:0006508	G3DSA:2.40.10.10|PF13365|PR00834|PTHR22939|SSF50494
ALIDE_RS05740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003779|IPR004675|IPR029032	AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like	GO:0051920|GO:0055114	G3DSA:1.20.1290.10|PF02627|PTHR33930|PTHR33930:SF2|SSF69118|TIGR00778
ALIDE_RS05745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001845|IPR011991	HTH ArsR-type DNA-binding domain|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|PF01022|PR00778|PTHR33154|PTHR33154:SF10|SM00418|SSF46785
ALIDE_RS05750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021309	Protein of unknown function DUF2892		PF11127
ALIDE_RS05755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001130|IPR018228|IPR032466	Deoxyribonuclease, TatD-related, conserved site|Metal-dependent hydrolase|TatD family	GO:0016788|GO:0016888	G3DSA:3.20.20.140|PF01026|PIRSF005902|PS01091|PTHR10060|SSF51556
ALIDE_RS05760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005122|IPR026353	Hypoxanthine-DNA glycosylase|Uracil-DNA glycosylase-like		G3DSA:3.40.470.10|PF03167|SM00986|SM00987|SSF52141|TIGR04274
ALIDE_RS05765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|SSF53335
ALIDE_RS05770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001482|IPR003593|IPR007831|IPR027417	AAA+ ATPase domain|General secretory system II, protein E, N-terminal|P-loop containing nucleoside triphosphate hydrolase|Type II secretion system protein E	GO:0005524|GO:0006810	G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PF05157|PS00662|PTHR30258|PTHR30258:SF13|SM00382|SSF160246|SSF52540
ALIDE_RS05775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009936	Protein of unknown function DUF1468		PF07331
ALIDE_RS05780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002823	Protein of unknown function DUF112, transmembrane		PF01970|PTHR35342|PTHR35342:SF2
ALIDE_RS05785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00081|PTHR24319|PTHR24319:SF23|SSF51735
ALIDE_RS05790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018389	TRAP transporter solute receptor DctP/TeaA	GO:0006810|GO:0030288	PF03480|PTHR33376
ALIDE_RS05795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001633|IPR029787	EAL domain|GGDEF domain|Nucleotide cyclase|PAS domain		G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF12860|PTHR33121|PTHR33121:SF13|SM00052|SM00267|SSF141868|SSF55073|SSF55785|TIGR00254
ALIDE_RS05800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR12715|PTHR12715:SF12|SSF103481
ALIDE_RS05805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR002364|IPR011032|IPR013149|IPR013154|IPR016040|IPR020843	Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain|Quinone oxidoreductase/zeta-crystallin, conserved site	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS01162|PTHR11695|PTHR11695:SF605|SM00829|SSF50129|SSF51735
ALIDE_RS05810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000086|IPR015797	NUDIX hydrolase domain|NUDIX hydrolase domain-like	GO:0016787	G3DSA:3.90.79.10|PF00293|SSF55811
ALIDE_RS05815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30419|PTHR30419:SF3|SSF46785|SSF53850
ALIDE_RS05820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016833	Putative sodium bile acid cotransporter		PF13593|PIRSF026166|PTHR18640|PTHR18640:SF9
ALIDE_RS05825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003841|IPR004633|IPR026022	Na/Pi-cotransporter II-related/YqeW-like protein|PhoU domain|Sodium-dependent phosphate transport protein	GO:0015321|GO:0016020|GO:0044341	G3DSA:1.20.58.220|PF01895|PF02690|PTHR10010|PTHR10010:SF26|SSF109755|TIGR00704
ALIDE_RS05830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004843|IPR026575|IPR029052	3,5-cyclic adenosine monophosphate phosphodiesterase CpdA|Calcineurin-like phosphoesterase domain, apaH type|Metallo-dependent phosphatase-like	GO:0004115|GO:0016787	G3DSA:3.60.21.10|MF_00905|PF00149|PTHR12905|PTHR12905:SF7|SSF56300
ALIDE_RS05835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2	GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0016887|GO:0043190	G3DSA:3.40.50.300|PF00005|PF08402|PS00211|PTHR24220|PTHR24220:SF150|SM00382|SSF50331|SSF52540
ALIDE_RS05840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30193|PTHR30193:SF20|SSF161098
ALIDE_RS05845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30193|PTHR30193:SF20|SSF161098
ALIDE_RS05850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:3.40.190.10|PF13343|PTHR30006|SSF53850
ALIDE_RS05855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000843|IPR010982|IPR028082	Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I|Transcription regulator HTH, LacI	GO:0003677|GO:0003700|GO:0006355	G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PTHR30146|SM00354|SSF47413|SSF53822
ALIDE_RS05860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001872	Peptidase A8, signal peptidase II	GO:0004190|GO:0006508|GO:0016020	MF_00161|PF01252|PR00781|PS00855|PTHR33695|PTHR33695:SF1|TIGR00077
ALIDE_RS05865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001412|IPR002300|IPR002301|IPR009008|IPR009080|IPR010663|IPR013155|IPR014729|IPR023585	Aminoacyl-tRNA synthetase, class 1a, anticodon-binding|Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Isoleucine-tRNA ligase|Isoleucine-tRNA ligase, type 1|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain|Zinc finger, FPG/IleRS-type	GO:0000166|GO:0002161|GO:0004812|GO:0004822|GO:0005524|GO:0005737|GO:0006418|GO:0006428	G3DSA:1.10.730.10|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_02002|PF00133|PF06827|PF08264|PR00984|PS00178|PTHR11946|PTHR11946:SF11|SSF47323|SSF50677|SSF52374|TIGR00392
ALIDE_RS05870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002606|IPR014729|IPR015864|IPR015865|IPR023465|IPR023468	FAD synthetase|Riboflavin kinase|Riboflavin kinase domain|Riboflavin kinase domain, bacterial/eukaryotic|Riboflavin kinase, bacterial|Rossmann-like alpha/beta/alpha sandwich fold	GO:0003919|GO:0008531|GO:0009231	G3DSA:2.40.30.30|G3DSA:3.40.50.620|PF01687|PF06574|PIRSF004491|PTHR22749|PTHR22749:SF0|SM00904|SSF52374|SSF82114|TIGR00083
ALIDE_RS05875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003615|IPR029471	HNH endonuclease 5|HNH nuclease		PF14279|PTHR33877|SM00507
ALIDE_RS05880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain	GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02771|PTHR10909|PTHR10909:SF341|SSF47203|SSF56645
ALIDE_RS05885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF229|SSF47203|SSF56645
ALIDE_RS05890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007432|IPR011991	Protein of unknown function DUF480|Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|MF_01584|PF04337|PTHR38768|PTHR38768:SF1|SSF46785
ALIDE_RS05895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001555|IPR002376|IPR004607	Formyl transferase, N-terminal|Phosphoribosylglycinamide formyltransferase|Phosphoribosylglycinamide formyltransferase, active site	GO:0004644|GO:0006189|GO:0009058|GO:0016742	G3DSA:3.40.50.170|MF_01930|PF00551|PS00373|PTHR10520|SSF53328|TIGR00639
ALIDE_RS05900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001678|IPR023267|IPR029063|IPR031341	RNA (C5-cytosine) methyltransferase|Ribosomal RNA small subunit methyltransferase F, N-terminal|S-adenosyl-L-methionine-dependent methyltransferase|SAM-dependent methyltransferase RsmB/NOP2-type	GO:0008168	G3DSA:3.30.70.1170|G3DSA:3.40.50.150|PF01189|PF17125|PR02008|PTHR22807|PTHR22807:SF33|SSF53335
ALIDE_RS05905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001705|IPR011332|IPR018264	Ribosomal protein L33|Ribosomal protein L33, conserved site|Zinc-binding ribosomal protein	GO:0003735|GO:0005622|GO:0005840|GO:0006412	MF_00294|PF00471|PS00582|PTHR15238|SSF57829|TIGR01023
ALIDE_RS05910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001383|IPR026569	Ribosomal protein L28|Ribosomal protein L28/L24	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:2.30.170.40|MF_00373|PF00830|PTHR13528|SSF143800|TIGR00009
ALIDE_RS05915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000103|IPR005982|IPR008255|IPR023753	FAD/NAD(P)-binding domain|Pyridine nucleotide-disulphide oxidoreductase, class-II|Pyridine nucleotide-disulphide oxidoreductase, class-II, active site|Thioredoxin reductase	GO:0004791|GO:0005737|GO:0016491|GO:0019430|GO:0055114	G3DSA:3.50.50.60|PF07992|PR00368|PR00469|PS00573|PTHR22912|PTHR22912:SF48|SSF51905|TIGR01292
ALIDE_RS05920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002543|IPR011991|IPR018541|IPR025199|IPR027417	DNA translocase FtsK, 4TM region|FtsK domain|FtsK gamma domain|P-loop containing nucleoside triphosphate hydrolase|Winged helix-turn-helix DNA-binding domain	GO:0000166|GO:0003677|GO:0005524	G3DSA:3.40.50.300|PF01580|PF09397|PF13491|PTHR22683|PTHR22683:SF41|SM00843|SSF46785|SSF52540
ALIDE_RS05925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004564|IPR018323|IPR029046	Lipoprotein localisation LolA/LolB/LppX|Outer membrane lipoprotein carrier protein LolA, Proteobacteria|Outer membrane lipoprotein carrier protein LolA-like	GO:0042597|GO:0042953|GO:0042954	G3DSA:2.50.20.10|MF_00240|PF03548|PTHR35869|SSF89392|TIGR00547
ALIDE_RS05930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000537|IPR026046	UbiA prenyltransferase domain containing protein 1|UbiA prenyltransferase family	GO:0004659|GO:0016021	PF01040|PIRSF005355|PTHR13929
ALIDE_RS05935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005122	Uracil-DNA glycosylase-like		G3DSA:3.40.470.10|PF03167|PTHR42160|PTHR42160:SF1|SM00986|SM00987|SSF52141
ALIDE_RS05940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR003959|IPR008921|IPR021886|IPR027417|IPR032423	AAA ATPase, C-terminal domain|AAA+ ATPase domain|ATPase, AAA-type, core|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|MgsA AAA+ ATPase C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0003677|GO:0005524|GO:0006260	G3DSA:1.10.3710.10|G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF00004|PF12002|PF16193|PTHR13779|PTHR13779:SF7|SM00382|SSF48019|SSF52540
ALIDE_RS05945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF371
ALIDE_RS05950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482|PTHR30482:SF10
ALIDE_RS05955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PS00211|PTHR24220|PTHR24220:SF358|SM00382|SSF52540
ALIDE_RS05960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR030660	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|High-affinity branched-chain amino acid transport ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0015658|GO:0015803|GO:0016887	G3DSA:3.40.50.300|PF00005|PIRSF039137|PS00211|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS05965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007437	Putative member of DMT superfamily		PF04342|PIRSF021239|PTHR38482
ALIDE_RS05970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011250|IPR027385	Outer membrane protein beta-barrel|Outer membrane protein/outer membrane enzyme PagP,  beta-barrel	GO:0016021	G3DSA:2.40.160.20|PF13505|SSF56925
ALIDE_RS05975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018445	Putative phosphate transport regulator		G3DSA:1.20.58.220|PF01865|PTHR37298|SSF109755
ALIDE_RS05980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001204	Phosphate transporter	GO:0005315|GO:0006817|GO:0016020	PF01384|PTHR11101
ALIDE_RS05990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016181	Acyl-CoA N-acyltransferase		G3DSA:3.40.630.30|PF13420|PTHR23091|PTHR23091:SF187|SSF55729
ALIDE_RS05995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000307|IPR023803	Ribosomal protein S16|Ribosomal protein S16 domain	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:3.30.1320.10|MF_00385|PF00886|PTHR12919|SSF54565|TIGR00002
ALIDE_RS06000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002676|IPR009000|IPR011033|IPR011961|IPR027275	16S rRNA processing protein RimM|PRC-barrel domain|PRC-barrel-like|RimM protein|Translation protein, beta-barrel domain	GO:0005840|GO:0006364|GO:0043022	G3DSA:2.30.30.240|G3DSA:2.40.30.60|MF_00014|PF01782|PF05239|PTHR33692|SSF50346|SSF50447|TIGR02273
ALIDE_RS06005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002649|IPR016009|IPR023148|IPR029026|IPR029028	Alpha/beta knot methyltransferases|tRNA (guanine-N1-)-methyltransferase, C-terminal|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA (guanine-N1-)-methyltransferase, bacteria|tRNA methyltransferase TRMD/TRM10-type domain	GO:0008033|GO:0052906	G3DSA:1.10.1270.20|G3DSA:3.40.1280.10|MF_00605|PF01746|PIRSF000386|PTHR32125|PTHR32125:SF1|SSF75217|TIGR00088
ALIDE_RS06010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001857|IPR008991|IPR018257	Ribosomal protein L19|Ribosomal protein L19, conserved site|Translation protein SH3-like domain	GO:0003735|GO:0005622|GO:0005840|GO:0006412	MF_00402|PF01245|PIRSF002191|PR00061|PS01015|PTHR15680|SSF50104|TIGR01024
ALIDE_RS06015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000086|IPR015797	NUDIX hydrolase domain|NUDIX hydrolase domain-like	GO:0016787	G3DSA:3.90.79.10|PF00293|PTHR12992|SSF55811
ALIDE_RS06020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004485	Cobalamin biosynthesis CobD/CbiB	GO:0009236|GO:0016021|GO:0048472	MF_00024|PF03186|PTHR38684
ALIDE_RS06025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001917|IPR004839|IPR005861|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Aminotransferase, class-II, pyridoxal-phosphate binding site|Histidinol-phosphate aminotransferase family|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0000105|GO:0003824|GO:0004400|GO:0008152|GO:0009058|GO:0016740|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01023|PF00155|PS00599|PTHR11751|PTHR11751:SF398|SSF53383|TIGR01141
ALIDE_RS06030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001902|IPR002645|IPR011547	SLC26A/SulP transporter|SLC26A/SulP transporter domain|STAS domain	GO:0008271|GO:0008272|GO:0015116|GO:0016020|GO:0016021|GO:0055085	G3DSA:3.30.750.24|PF00916|PF01740|PTHR11814|PTHR11814:SF112|SSF52091
ALIDE_RS06035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004881|IPR010914|IPR012340|IPR027417	Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|Ribosome biogenesis GTPase RsgA, putative|RsgA type GTPase domain	GO:0003924|GO:0005525	G3DSA:1.10.40.50|G3DSA:2.40.50.140|G3DSA:3.40.50.300|MF_01820|PF03193|PTHR32120|PTHR32120:SF2|SSF50249|SSF52540|TIGR00157
ALIDE_RS06040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001533	Transcriptional coactivator/pterin dehydratase	GO:0006729|GO:0008124	G3DSA:3.30.1360.20|MF_00434|PF01329|PTHR12599|SSF55248
ALIDE_RS06045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001915|IPR027057|IPR032456	CAAX prenyl protease 1|CAAX prenyl protease 1, N-terminal|Peptidase M48	GO:0004222|GO:0006508|GO:0008233|GO:0071586	G3DSA:3.30.2010.10|PF01435|PF16491|PTHR10120|PTHR10120:SF24
ALIDE_RS06050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012337|IPR013520|IPR022894	Exonuclease, RNase T/DNA polymerase III|Oligoribonuclease|Ribonuclease H-like domain	GO:0003676|GO:0016788	G3DSA:3.30.420.10|MF_00045|PF00929|PTHR11046|PTHR11046:SF1|SM00479|SSF53098
ALIDE_RS06055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000709|IPR028081|IPR028082	Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I	GO:0006865	G3DSA:3.40.50.2300|PF13458|PTHR30483|PTHR30483:SF20|SSF53822
ALIDE_RS06060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000629|IPR001650|IPR011545|IPR014001|IPR027417	ATP-dependent RNA helicase DEAD-box, conserved site|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0003676|GO:0005524	G3DSA:3.40.50.300|PF00270|PF00271|PS00039|PTHR24031|SM00487|SM00490|SSF52540
ALIDE_RS06065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR029787	GGDEF domain|Nucleotide cyclase|PAS domain		G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF13188|PTHR10799|PTHR10799:SF660|SM00267|SSF55073|SSF55785|TIGR00254
ALIDE_RS06070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004812|IPR011701|IPR020846	Drug resistance transporter Bcr/CmlA subfamily|Major facilitator superfamily|Major facilitator superfamily domain	GO:0005215|GO:0006810|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23502|PTHR23502:SF19|SSF103473|TIGR00710
ALIDE_RS06075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007410	DR1885-like metal-binding protein		PF04314|PTHR36302|PTHR36302:SF1|SSF110087
ALIDE_RS06085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000595|IPR011991|IPR012318|IPR014710|IPR018490	Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|PTHR24567|PTHR24567:SF30|SM00100|SM00419|SSF46785|SSF51206
ALIDE_RS06090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR010917|IPR012910	TonB-dependent receptor, beta-barrel|TonB-dependent receptor, conserved site|TonB-dependent receptor, plug domain	GO:0004872|GO:0006810|GO:0016020	G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PS01156|PTHR32552|SSF56935
ALIDE_RS06095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003773|IPR027024	ABC-type uncharacterised transport system, substrate-binding component, TM0202 type|Menaquinone biosynthesis enzyme		G3DSA:3.40.190.10|PF02621|PIRSF027386|PTHR30024|SSF53850
ALIDE_RS06100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30151|SSF161098
ALIDE_RS06105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|SM00382|SSF52540
ALIDE_RS06110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010266	NnrS		PF05940
ALIDE_RS06115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR012910	TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain	GO:0004872|GO:0006810|GO:0016020	G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PTHR30069|PTHR30069:SF2|SSF56935
ALIDE_RS06120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003672	CobN/magnesium chelatase	GO:0009058	PF02514|PTHR23304|PTHR23304:SF113
ALIDE_RS06135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002898	MotA/TolQ/ExbB proton channel	GO:0006810|GO:0008565|GO:0016020	PF01618
ALIDE_RS06140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018676	Protein of unknown function DUF2149		PF09919
ALIDE_RS06145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762|IPR023109	DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|SSF56349
ALIDE_RS06150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025319	Domain of unknown function DUF4224		PF13986
ALIDE_RS06195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008766	Replication gene A protein	GO:0006260	PF05840
ALIDE_RS06210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007684	Zinc finger, Ogr/Delta-type		PF04606
ALIDE_RS06230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982|IPR015927|IPR019759|IPR028360	Lambda repressor-like, DNA-binding domain|Peptidase S24/S26, beta-ribbon domain|Peptidase S24/S26A/S26B|Peptidase S24/S26A/S26B/S26C	GO:0003677	G3DSA:1.10.260.40|G3DSA:2.10.109.10|PF00717|SSF47413|SSF51306
ALIDE_RS06235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001357|IPR026881	BRCT domain|WYL domain		G3DSA:3.40.50.10190|PF13280
ALIDE_RS06245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002197|IPR010982|IPR018841	DNA binding HTH domain,  Fis-type|Lambda repressor-like, DNA-binding domain|Protein of unknown function DUF2442	GO:0003677|GO:0043565	G3DSA:1.10.260.40|G3DSA:3.30.2020.10|PF02954|PF10387|SSF143880|SSF47413
ALIDE_RS06250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025427	Protein of unknown function DUF4160		PF13711
ALIDE_RS06255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:3.55.50.10|PF05954|SSF69279
ALIDE_RS06260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009734|IPR016912	Bacteriophage P2, GpU|Myoviridae, GpU		PF06995|PIRSF029208
ALIDE_RS06265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010090	Phage tail tape measure protein		PF10145|TIGR01760
ALIDE_RS06280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR019289	Bacteriophage tail protein Gp41, putative		PF10109
ALIDE_RS06285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006498	Tail tube protein		PF04985|PTHR35861|PTHR35861:SF2|TIGR01611
ALIDE_RS06290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007067	Tail sheath protein		PF04984|PTHR35861|PTHR35861:SF1
ALIDE_RS06310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006530|IPR031325	RHS repeat|YD repeat		PF05593|TIGR01643
ALIDE_RS06320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006521	Tail protein I		PF09684
ALIDE_RS06325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006949	Baseplate protein J-like		PF04865|PTHR35862|PTHR35862:SF1
ALIDE_RS06330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007048	GpW/Gp25/anti-adapter protein IraD		G3DSA:3.10.450.40|PF04965|PTHR35862|PTHR35862:SF2|SSF160719
ALIDE_RS06335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006531|IPR013046	Gp5 N-terminal|Phage baseplate assembly protein V/Gp45		PF04717|TIGR01644
ALIDE_RS06340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006522	Phage virion morphogensis protein		PF05069|TIGR01635
ALIDE_RS06345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009678	Bacteriophage tail completion protein R		PF06891
ALIDE_RS06350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR019659	Protein of unknown function DUF2514		PF10721
ALIDE_RS06355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002196|IPR023346|IPR023347	Glycoside hydrolase, family 24|Lysozyme domain|Lysozyme-like domain	GO:0003796|GO:0009253|GO:0016998	G3DSA:1.10.530.40|PF00959|PTHR38107|SSF53955
ALIDE_RS06365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008861	Phage Tail Protein X-like		PF05489
ALIDE_RS06370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009225	Bacteriophage head completion protein GpL	GO:0019069	PF05926
ALIDE_RS06375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010270	Bacteriophage P2, GpM	GO:0003677|GO:0004519|GO:0019069	PF05944
ALIDE_RS06380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006441	Bacteriophage P2, GpN, major capsid	GO:0019028	PF05125|TIGR01551
ALIDE_RS06385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009228	Capsid scaffolding protein GpO	GO:0019069	PF05929
ALIDE_RS06390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004921|IPR010332	ATPase terminase subunit, putative|Terminase, large subunit	GO:0005524|GO:0019069	PF03237|PF06056
ALIDE_RS06395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006430|IPR006944|IPR030935	Bacteriophage/Gene transfer agent portal protein|Phage portal protein PBSX family|Phage portal protein PBSX family, Proteobacteria		PF04860|PIRSF018494|TIGR01540
ALIDE_RS06405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001093|IPR005994|IPR013785|IPR015875	Aldolase-type TIM barrel|Guanosine monophosphate reductase, type2|IMP dehydrogenase / GMP reductase, conserved site|IMP dehydrogenase/GMP reductase	GO:0003824|GO:0003920|GO:0006163|GO:0016491|GO:0055114|GO:1902560	G3DSA:3.20.20.70|MF_01511|PF00478|PIRSF036500|PS00487|PTHR11911|PTHR11911:SF97|SM01240|SSF51412|TIGR01306
ALIDE_RS06410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000212|IPR013986|IPR014016|IPR014017|IPR027417	DExx box DNA helicase domain|DNA helicase, UvrD/REP type|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD-like Helicase, ATP-binding domain	GO:0003677|GO:0004003|GO:0005524|GO:0016787	G3DSA:1.10.10.160|G3DSA:1.10.486.10|G3DSA:3.40.50.300|PF00580|PF13361|PTHR11070|PTHR11070:SF7|SSF52540
ALIDE_RS06415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008557	Protein of unknown function DUF839		PF05787
ALIDE_RS06420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR001638|IPR029787	GGDEF domain|Nucleotide cyclase|Solute-binding protein  family 3/N-terminal domain of MltF		G3DSA:3.30.70.270|G3DSA:3.40.190.10|PF00497|PF00990|PTHR10799|PTHR10799:SF750|SM00062|SM00267|SSF53850|SSF55073|TIGR00254
ALIDE_RS06430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002575|IPR005280|IPR011009	Aminoglycoside phosphotransferase|Homoserine kinase ThrB|Protein kinase-like domain	GO:0004413|GO:0009088	G3DSA:3.30.200.20|G3DSA:3.90.1200.10|MF_00301|PF01636|PTHR21064|SSF56112|TIGR00938
ALIDE_RS06445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001098|IPR002298|IPR002421|IPR002562|IPR008918|IPR012337|IPR018320|IPR019760|IPR020045|IPR020046|IPR029060	3'-5' exonuclease domain|5'-3' exonuclease, C-terminal domain|5'-3' exonuclease, N-terminal|5'-3' exonuclease, alpha-helical arch, N-terminal|DNA polymerase 1|DNA polymerase A|DNA-directed DNA polymerase, family A, conserved site|DNA-directed DNA polymerase, family A, palm domain|Helix-hairpin-helix motif, class 2|PIN domain-like|Ribonuclease H-like domain	GO:0003676|GO:0003677|GO:0003824|GO:0003887|GO:0006139|GO:0006260|GO:0006261|GO:0008408	G3DSA:1.10.150.20|G3DSA:1.20.1060.10|G3DSA:3.30.420.10|G3DSA:3.30.70.370|G3DSA:3.40.50.1010|PF00476|PF01367|PF01612|PF02739|PR00868|PS00447|PTHR10133|PTHR10133:SF27|SM00279|SM00474|SM00475|SM00482|SSF47807|SSF53098|SSF56672|SSF88723|TIGR00593
ALIDE_RS06450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|SSF46785|SSF53850
ALIDE_RS06455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24321|PTHR24321:SF6|SSF51735
ALIDE_RS06460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS06465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003779|IPR029032	AhpD-like|Carboxymuconolactone decarboxylase-like	GO:0051920|GO:0055114	G3DSA:1.20.1290.10|PF02627|PTHR34846|PTHR34846:SF2|SSF69118
ALIDE_RS06470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30293|PTHR30293:SF0|SSF46785|SSF53850
ALIDE_RS06475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS06480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS06485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|PTHR11941:SF85|SSF52096
ALIDE_RS06490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002925|IPR029058	Alpha/Beta hydrolase fold|Dienelactone hydrolase	GO:0016787	G3DSA:3.40.50.1820|PF01738|PTHR17630|PTHR17630:SF42|SSF53474
ALIDE_RS06495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003689	Zinc/iron permease	GO:0016020|GO:0030001|GO:0046873|GO:0055085	PF02535|PTHR16950
ALIDE_RS06500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR007492|IPR011006	CheY-like superfamily|LytTR DNA-binding domain|Signal transduction response regulator, receiver domain	GO:0000160|GO:0003677	G3DSA:2.40.50.40|G3DSA:3.40.50.2300|PF00072|PF04397|PTHR26402|SM00448|SM00850|SSF52172
ALIDE_RS06505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006383|IPR023190|IPR023214	HAD-like domain|HAD-superfamily hydrolase, subfamily IB, PSPase-like|Phosphoserine phosphatase, domain 2	GO:0004647|GO:0006564|GO:0008152|GO:0016791	G3DSA:1.10.150.210|G3DSA:3.40.50.1000|PF12710|PTHR10000|PTHR10000:SF7|SSF56784|TIGR00338|TIGR01488
ALIDE_RS06510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006439|IPR008927|IPR013118|IPR013328|IPR016040|IPR023214	6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|HAD hydrolase, subfamily IA|HAD-like domain|Mannitol dehydrogenase, C-terminal|NAD(P)-binding domain	GO:0008152|GO:0016491|GO:0016787|GO:0050662|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.1000|G3DSA:3.40.50.720|PF08125|PF13419|PR00413|PTHR18901|SSF48179|SSF56784|TIGR01509
ALIDE_RS06520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001650|IPR003711|IPR004576|IPR005118|IPR011545|IPR014001|IPR027417	CarD-like/TRCF domain|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transcription-repair coupling factor|Transcription-repair-coupling factor, C-terminal domain	GO:0003676|GO:0003684|GO:0005524|GO:0006281	G3DSA:3.30.2060.10|G3DSA:3.40.50.300|MF_00969|PF00270|PF00271|PF02559|PF03461|PTHR14025|PTHR14025:SF21|SM00487|SM00490|SM00982|SM01058|SSF141259|SSF143517|SSF52540|TIGR00580
ALIDE_RS06525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001228|IPR018294|IPR029044	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site|Nucleotide-diphospho-sugar transferases	GO:0003824|GO:0008299|GO:0050518	G3DSA:3.90.550.10|MF_00108|PF01128|PS01295|PTHR32125|PTHR32125:SF4|SSF53448|TIGR00453
ALIDE_RS06530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003526|IPR020555	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase|2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site	GO:0008685|GO:0016114	G3DSA:3.30.1330.50|MF_00107|PF02542|PS01350|PTHR32125|SSF69765|TIGR00151
ALIDE_RS06535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003660|IPR003661|IPR004358|IPR032408	HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Sensor histidine kinase RisS, periplasmic domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PF16524|PR00344|PTHR24423|SM00304|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS06540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991|IPR016032	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF292|SM00448|SM00862|SSF46894|SSF52172
ALIDE_RS06545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007497	Protein of unknown function DUF541		PF04402
ALIDE_RS06550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR011294|IPR016040|IPR020904	3-hydroxybutyrate dehydrogenase|NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0003858|GO:0016491|GO:0055114	G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|PTHR24322|PTHR24322:SF328|SSF51735|TIGR01963
ALIDE_RS06555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1		G3DSA:3.40.50.1820|PF12697|PTHR10992|PTHR10992:SF771|SSF53474
ALIDE_RS06560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002912|IPR003607|IPR004095|IPR004811|IPR007685|IPR012675|IPR012676	ACT domain|Beta-grasp domain|HD/PDEase domain|RelA/SpoT|RelA/SpoT family|TGS|TGS-like	GO:0008152|GO:0015969|GO:0016597	G3DSA:3.10.20.30|G3DSA:3.30.460.10|G3DSA:3.30.70.260|PF02824|PF04607|PF13291|PF13328|PTHR21262|PTHR21262:SF5|SM00954|SSF109604|SSF55021|SSF81271|SSF81301|TIGR00691
ALIDE_RS06575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000504|IPR012677	Nucleotide-binding alpha-beta plait domain|RNA recognition motif domain	GO:0000166|GO:0003676	G3DSA:3.30.70.330|PF00076|PTHR24012|SM00360|SSF54928
ALIDE_RS06580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007897|IPR010134|IPR012909	PHA accumulation regulator DNA-binding, N-terminal|PHB accumulation regulatory|Polyhydroxyalkanoate synthesis repressor PhaR		PF05233|PF07879|TIGR01848
ALIDE_RS06585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005839|IPR005840|IPR006638|IPR007197|IPR012340|IPR013848|IPR020612|IPR023404|IPR023970	Elongator protein 3/MiaB/NifB|Methylthiotransferase|Methylthiotransferase, N-terminal|Methylthiotransferase, conserved site|Methylthiotransferase/radical SAM-type protein|Nucleic acid-binding, OB-fold|Radical SAM|Radical SAM, alpha/beta horseshoe|Ribosomal protein S12 methylthiotransferase RimO	GO:0003824|GO:0005737|GO:0009451|GO:0016740|GO:0018339|GO:0043412|GO:0051536|GO:0051539	G3DSA:2.40.50.140|G3DSA:3.80.30.20|MF_01865|PF00919|PF04055|PS01278|PTHR11918|PTHR11918:SF57|SM00729|SSF102114|TIGR00089|TIGR01125
ALIDE_RS06590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001179|IPR023566	FKBP-type peptidyl-prolyl cis-trans isomerase domain|Peptidyl-prolyl cis-trans isomerase, FKBP-type	GO:0006457	G3DSA:3.10.50.40|PF00254|PTHR10516|SSF54534
ALIDE_RS06595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002577|IPR011991	Helix-turn-helix, HxlR type|Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|PF01638|SSF46785
ALIDE_RS06600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS06605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000891|IPR002034|IPR013785	Aldolase-type TIM barrel|Alpha-isopropylmalate/homocitrate synthase, conserved site|Pyruvate carboxyltransferase	GO:0003824|GO:0019752|GO:0046912	G3DSA:3.20.20.70|PF00682|PS00815|PTHR10277|PTHR10277:SF44|SSF51569
ALIDE_RS06610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS06615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS06620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003710|IPR008927|IPR013328|IPR013332|IPR013752|IPR016040	6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|Ketopantoate reductase ApbA/PanE|Ketopantoate reductase, C-terminal domain|Ketopantoate reductase, N-terminal domain|NAD(P)-binding domain	GO:0005737|GO:0008677|GO:0015940|GO:0016491|GO:0050661|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF02558|PF08546|PTHR21708|SSF48179|SSF51735|TIGR00745
ALIDE_RS06625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005019|IPR011257	DNA glycosylase|Methyladenine glycosylase	GO:0003824|GO:0006281|GO:0006284|GO:0008725	G3DSA:1.10.340.30|PF03352|PTHR30037|PTHR30037:SF3|SSF48150
ALIDE_RS06630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000943|IPR007127|IPR007624|IPR007627|IPR007630|IPR007631|IPR009042|IPR011991|IPR012760|IPR013324|IPR013325|IPR014284|IPR028630	RNA polymerase sigma factor 70, non-essential domain|RNA polymerase sigma factor 70, region 1.1|RNA polymerase sigma factor RpoD|RNA polymerase sigma factor RpoD, C-terminal|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 1.2|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 3|RNA polymerase sigma-70 region 4|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987	G3DSA:1.10.10.10|G3DSA:1.10.601.10|MF_00963|PF00140|PF03979|PF04539|PF04542|PF04545|PF04546|PR00046|PS00715|PS00716|PTHR30603|PTHR30603:SF0|SSF88659|SSF88946|TIGR02393|TIGR02937
ALIDE_RS06635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002694|IPR006171|IPR006295|IPR013264|IPR019475|IPR030846	DNA primase DnaG, bacteria|DNA primase, DnaB-helicase binding domain|DNA primase, DnaG|DNA primase, catalytic core, N-terminal|Toprim domain|Zinc finger, CHC2-type	GO:0003677|GO:0003896|GO:0006260|GO:0006269|GO:0008270|GO:0016779	G3DSA:1.20.50.20|G3DSA:3.40.1360.10|G3DSA:3.90.580.10|G3DSA:3.90.980.10|MF_00974|PF01807|PF08275|PF10410|PF13662|PTHR30313|SM00400|SM00493|SSF56731|SSF57783|TIGR01391
ALIDE_RS06640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24095|PTHR24095:SF169|SSF56801
ALIDE_RS06645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001736|IPR025202	Phospholipase D-like domain|Phospholipase D/Transphosphatidylase	GO:0003824	G3DSA:3.30.870.10|PF13091|PTHR21248|PTHR21248:SF12|SM00155|SSF56024
ALIDE_RS06650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR011991|IPR024370	PBP domain|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF12727|PTHR38431|SSF46785|SSF53850
ALIDE_RS06655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30183|PTHR30183:SF4|SSF161098
ALIDE_RS06660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|SM00382|SSF52540
ALIDE_RS06665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR024370	PBP domain		G3DSA:3.40.190.10|PF12849|PTHR37945|SSF53850
ALIDE_RS06675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR005116|IPR008995|IPR011868|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate ABC transporter, ATP-binding protein|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 1	GO:0005524|GO:0015098|GO:0015689|GO:0016020|GO:0016887	G3DSA:2.40.50.100|G3DSA:3.40.50.300|PF00005|PF03459|PS00211|PTHR24220|PTHR24220:SF284|SM00382|SSF50331|SSF52540|TIGR02142
ALIDE_RS06680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR011867	ABC transporter type 1, transmembrane domain MetI-like|Molybdate ABC transporter, permease protein	GO:0006810|GO:0015098|GO:0015689|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30183|SSF161098|TIGR02141
ALIDE_RS06685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005950	Molybdenum ABC transporter, periplasmic binding protein	GO:0015412|GO:0015689|GO:0030288	G3DSA:3.40.190.10|PF13531|PIRSF004846|PTHR30632|SSF53850|TIGR01256
ALIDE_RS06690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005116|IPR008995|IPR011991|IPR016462	Molybdate-dependent transcriptional regulator ModE|Molybdate/tungstate binding, C-terminal|Transcription regulator HTH, LysR|Transport-associated OB, type 1|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355|GO:0015689|GO:0030151	G3DSA:1.10.10.10|G3DSA:2.40.50.100|PF00126|PF03459|PIRSF005763|PTHR30432|SSF46785|SSF50331
ALIDE_RS06695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PTHR24220|PTHR24220:SF400|SM00382|SSF52540
ALIDE_RS06700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF469|SM00382|SSF52540
ALIDE_RS06705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|PTHR30483:SF17|SSF53822
ALIDE_RS06710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|PTHR30483:SF17|SSF53822
ALIDE_RS06715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF379
ALIDE_RS06720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482|PTHR30482:SF8
ALIDE_RS06725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010791|IPR023374|IPR033451	AttH domain|AttH, lipocalin-like domain|AttH-like domain		G3DSA:2.40.370.10|PF07143|PF17186|PTHR38591|SSF159245
ALIDE_RS06730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzyme		G3DSA:3.40.50.1100|PF00291|PTHR10314|PTHR10314:SF126|SSF53686
ALIDE_RS06735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003838	ABC transporter permease protein domain	GO:0016020	PF02687|PTHR30489|PTHR30489:SF6
ALIDE_RS06740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002068|IPR008978|IPR031107	Alpha crystallin/Hsp20 domain|HSP20-like chaperone|Small heat shock protein HSP20		G3DSA:2.60.40.790|PF00011|PTHR11527|SSF49764
ALIDE_RS06745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF430|SM00382|SSF52540
ALIDE_RS06750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018022|IPR027417	P-loop containing nucleoside triphosphate hydrolase|tRNA dimethylallyltransferase	GO:0008033	G3DSA:1.10.287.890|G3DSA:3.40.50.300|MF_00185|PF01715|PTHR11088|SSF52540|TIGR00174
ALIDE_RS06755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004812|IPR011701|IPR020846	Drug resistance transporter Bcr/CmlA subfamily|Major facilitator superfamily|Major facilitator superfamily domain	GO:0005215|GO:0006810|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23502|PTHR23502:SF19|SSF103473|TIGR00710
ALIDE_RS06760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006139|IPR006140|IPR016040	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain	GO:0008152|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF00389|PF02826|PTHR10996|PTHR10996:SF152|SSF51735|SSF52283
ALIDE_RS06765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001310|IPR011146|IPR019808	HIT-like domain|Histidine triad (HIT) protein|Histidine triad, conserved site	GO:0003824	G3DSA:3.30.428.10|PF01230|PR00332|PS00892|PTHR23089|SSF54197
ALIDE_RS06770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023614	Porin domain		G3DSA:2.40.160.10|PF13609|SSF56935
ALIDE_RS06775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011991|IPR012318|IPR014710|IPR018490	Crp-type HTH domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF13545|SM00419|SSF46785|SSF51206
ALIDE_RS06780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR013655|IPR029787	GGDEF domain|Nucleotide cyclase|PAS domain|PAS fold-3	GO:0005515	G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF08447|PTHR10799|PTHR10799:SF710|SM00091|SM00267|SSF55073|SSF55785|TIGR00229|TIGR00254
ALIDE_RS06785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF239|SM00382|SSF52540
ALIDE_RS06790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR32196|PTHR32196:SF22
ALIDE_RS06795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR32196|PTHR32196:SF33
ALIDE_RS06800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003760	Basic membrane lipoprotein	GO:0005886	G3DSA:3.40.50.2300|PF02608|PTHR34296|PTHR34296:SF1
ALIDE_RS06805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003760	Basic membrane lipoprotein	GO:0005886	G3DSA:3.40.50.2300|PF02608|PTHR34296|PTHR34296:SF1
ALIDE_RS06810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR023753	FAD dependent oxidoreductase|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF01266|PTHR13847|PTHR13847:SF190|SSF51905
ALIDE_RS06815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR030679	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase	GO:0003333|GO:0005524|GO:0015424|GO:0016887	G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|PTHR24220|PTHR24220:SF550|SM00382|SSF52540
ALIDE_RS06820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065|IPR014341	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain|Ectoine/hydroxyectoine ABC transporter, permease protein EhuD	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30614|PTHR30614:SF14|SSF161098|TIGR01726|TIGR03003
ALIDE_RS06825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001638	Solute-binding protein  family 3/N-terminal domain of MltF		G3DSA:3.40.190.10|PF00497|PTHR18966|PTHR18966:SF152|SM00062|SSF53850
ALIDE_RS06830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|SM00346|SSF46785|SSF55781
ALIDE_RS06835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008579|IPR011051|IPR014710	Domain of unknown function DUF861, cupin-3|RmlC-like cupin domain|RmlC-like jelly roll fold		G3DSA:2.60.120.10|PF05899|PTHR33271|SSF51182
ALIDE_RS06840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001365|IPR006330|IPR028892|IPR032466	Adenine deaminase type 2|Adenosine/AMP deaminase domain|Adenosine/adenine deaminase|Metal-dependent hydrolase	GO:0000034|GO:0006146|GO:0019239	G3DSA:3.20.20.140|MF_01962|PF00962|PTHR11409|PTHR11409:SF41|SSF51556|TIGR01430
ALIDE_RS06845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006862|IPR014940|IPR016662|IPR029058	Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase|Acyl-CoA thioesterase, long chain|Alpha/Beta hydrolase fold|BAAT/Acyl-CoA thioester hydrolase C-terminal	GO:0006637|GO:0016790	G3DSA:3.40.50.1820|PF04775|PF08840|PIRSF016521|PTHR10824|PTHR10824:SF4|SSF53474
ALIDE_RS06850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000914|IPR023765|IPR030678	Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain|Solute-binding protein family 5, conserved site	GO:0043190|GO:0055085	G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|PS01040|PTHR30290|SSF53850
ALIDE_RS06855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR013563|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0000166|GO:0005524|GO:0015833|GO:0016887	G3DSA:3.40.50.300|PF00005|PF08352|PS00211|PTHR24220|PTHR24220:SF336|SM00382|SSF52540|TIGR01727
ALIDE_RS06860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR013563|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0000166|GO:0005524|GO:0015833|GO:0016887	G3DSA:3.40.50.300|PF00005|PF08352|PS00211|PTHR24220|PTHR24220:SF535|SM00382|SSF52540|TIGR01727
ALIDE_RS06865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR025966	ABC transporter type 1, transmembrane domain MetI-like|Oligopeptide transport permease C-like, N-terminal domain	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PF12911|PTHR30465|PTHR30465:SF67|SSF161098
ALIDE_RS06870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30465|PTHR30465:SF0|SSF161098
ALIDE_RS06875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30427|PTHR30427:SF1|SSF46785|SSF53850
ALIDE_RS06880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007325|IPR017484	Kynurenine formamidase|Kynurenine formamidase, bacteria	GO:0004061|GO:0004328|GO:0019441	G3DSA:3.50.30.50|MF_01969|PF04199|PTHR31118|SSF102198|TIGR03035
ALIDE_RS06885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005358	Putative zinc- or iron-chelating domain containing protein		PF03692
ALIDE_RS06890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007167|IPR008988	Ferrous iron transporter FeoA domain|Transcriptional repressor, C-terminal	GO:0046914	PF04023|SM00899|SSF50037
ALIDE_RS06895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003373|IPR006073|IPR011619|IPR011640|IPR011642|IPR027417	Ferrous iron transport protein B|Ferrous iron transport protein B, C-terminal|Ferrous iron transport protein B, N-terminal|GTP binding domain|Nucleoside transporter/FeoB GTPase, Gate domain|P-loop containing nucleoside triphosphate hydrolase	GO:0005525|GO:0015093|GO:0015684|GO:0016021	G3DSA:3.40.50.300|PF02421|PF07664|PF07670|PR00326|PTHR11649|PTHR11649:SF37|SSF52540|TIGR00437
ALIDE_RS06905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005358	Putative zinc- or iron-chelating domain containing protein		PF03692
ALIDE_RS06910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021331	Protein of unknown function DUF2945		PF11160
ALIDE_RS06915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007438|IPR014519	Protein of unknown function DUF488|Uncharacterised conserved protein UCP024492		PF04343|PIRSF024492|PTHR39337|PTHR39337:SF1
ALIDE_RS06920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002292|IPR006130|IPR006131|IPR006132|IPR024904	Aspartate/ornithine carbamoyltransferase|Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain|Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding|Ornithine carbamoyltransferase|Ornithine/putrescine carbamoyltransferase	GO:0004585|GO:0006520|GO:0006591|GO:0016597|GO:0016743	G3DSA:3.40.50.1370|MF_01109|PF00185|PF02729|PR00100|PR00102|PS00097|PTHR11405|PTHR11405:SF1|SSF53671|TIGR00658
ALIDE_RS06925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004636|IPR005814|IPR015421|IPR015422|IPR015424	Acetylornithine/Succinylornithine transaminase family|Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0006525|GO:0008483|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01107|PF00202|PS00600|PTHR11986|PTHR11986:SF79|SSF53383|TIGR00707
ALIDE_RS06930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021969	Protein of unknown function DUF3579		PF12112
ALIDE_RS06935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein		G3DSA:3.50.30.40|PF03737|PTHR33254|PTHR33254:SF2|SSF89562
ALIDE_RS06940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002583	Ribosomal protein S20	GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:1.20.58.110|MF_00500|PD004231|PF01649|PTHR33398|PTHR33398:SF1|SSF46992|TIGR00029
ALIDE_RS06945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004268	Peptidoglycan biosynthesis protein MurJ		PF03023|PIRSF002869|PR01806|PTHR11206|PTHR11206:SF90|TIGR01695
ALIDE_RS06950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990|IPR032698	Protein SirB1, N-terminal|Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.25.40.10|PF13369|PF13371|PTHR31350|PTHR31350:SF1
ALIDE_RS06955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006015|IPR006016|IPR014729	Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA	GO:0006950	G3DSA:3.40.50.620|PF00582|PR01438|PTHR31964|PTHR31964:SF26|SSF52402
ALIDE_RS06960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002549	Transmembrane protein TqsA-like		PF01594
ALIDE_RS06965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004733|IPR010918|IPR016188	AIR synthase-related protein, C-terminal domain|Phosphoribosylformylglycinamidine cyclo-ligase|PurM-like, N-terminal domain	GO:0004641|GO:0005737|GO:0006189	G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_00741|PF00586|PF02769|PTHR10520|SSF55326|SSF56042|TIGR00878
ALIDE_RS06970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000101|IPR029055	Gamma-glutamyltranspeptidase|Nucleophile aminohydrolases, N-terminal	GO:0003840|GO:0006749	PF01019|PR01210|PTHR11686|PTHR11686:SF27|SSF56235
ALIDE_RS06975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013317|IPR017788|IPR027417	Chromosomal replication initiator protein DnaA|DnaA regulatory inactivator Hda|P-loop containing nucleoside triphosphate hydrolase	GO:0032297	G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00308|PTHR30050|PTHR30050:SF5|SSF52540|TIGR03420
ALIDE_RS06980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006383|IPR006385|IPR023214	HAD-like domain|HAD-superfamily hydrolase, subfamily IB, PSPase-like|HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial	GO:0008152|GO:0016791	G3DSA:1.20.1440.100|G3DSA:3.40.50.1000|PF12710|PTHR10000|PTHR10000:SF10|SSF56784|TIGR01488|TIGR01490
ALIDE_RS06985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002646|IPR010206|IPR025866|IPR032828	Poly A polymerase, head domain|Poly(A) polymerase I|Polymerase A arginine-rich C-terminal domain|tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain	GO:0003723|GO:0004652|GO:0006378|GO:0006396|GO:0016779	G3DSA:1.10.3090.10|G3DSA:3.30.460.10|MF_00957|PF01743|PF12626|PF12627|PTHR13734|PTHR13734:SF47|SSF81301|SSF81891|TIGR01942
ALIDE_RS06990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000550	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	GO:0003848|GO:0009396	G3DSA:3.30.70.560|PF01288|PS00794|PTHR20941|SSF55083|TIGR01498
ALIDE_RS06995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001173|IPR029044	Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases		G3DSA:3.90.550.10|PF00535|PTHR10859|PTHR10859:SF86|SSF53448
ALIDE_RS07000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF13231|PTHR33908|PTHR33908:SF3
ALIDE_RS07005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007267	GtrA-like protein	GO:0000271|GO:0006810|GO:0016021	PF04138
ALIDE_RS07010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002509|IPR006879|IPR011330	Chitooligosaccharide deacetylase ChbG-like|Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain	GO:0003824|GO:0005975|GO:0016810	G3DSA:3.20.20.370|PF04794|PTHR31609|SSF88713
ALIDE_RS07015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS07020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS07025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000257	Uroporphyrinogen decarboxylase (URO-D)	GO:0004853|GO:0006779	G3DSA:3.20.20.210|PF01208|SSF51726
ALIDE_RS07030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS07035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzyme		G3DSA:3.40.50.1100|PF00291|PTHR10314|PTHR10314:SF126|SSF53686
ALIDE_RS07040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR001221|IPR001433|IPR001709|IPR006058|IPR008333|IPR012675|IPR017938	2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain|Flavoprotein pyridine nucleotide cytochrome reductase|Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel	GO:0009055|GO:0016491|GO:0051536|GO:0051537|GO:0055114	G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00111|PF00175|PF00970|PR00371|PR00410|PS00197|PTHR19370|PTHR19370:SF68|SSF52343|SSF54292|SSF63380
ALIDE_RS07045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001509|IPR016040	NAD(P)-binding domain|NAD-dependent epimerase/dehydratase, N-terminal domain	GO:0003824|GO:0050662	G3DSA:3.40.50.720|PF01370|PTHR10366|PTHR10366:SF430|SSF51735
ALIDE_RS07050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025392	Domain of unknown function DUF4124		PF13511
ALIDE_RS07060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002559|IPR008490	Transposase InsH, N-terminal|Transposase, IS4-like	GO:0003677|GO:0004803|GO:0006313	PF01609|PF05598
ALIDE_RS07065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS07070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS07075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|PTHR10909|PTHR10909:SF307|SSF47203|SSF56645
ALIDE_RS07080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30537|PTHR30537:SF15|SSF46785|SSF53850
ALIDE_RS07085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007300	CidB/LrgB family		PF04172|PTHR30249|PTHR30249:SF5
ALIDE_RS07105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013424	PEP-CTERM protein-sorting domain		PF07589|TIGR02595
ALIDE_RS07110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008767	Bacteriophage SPP1, head-tail adaptor		PF05521|TIGR01563
ALIDE_RS07115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006450|IPR021146	Phage gp6-like head-tail connector protein|Phage protein of unkonwn function		PF05135|TIGR01560
ALIDE_RS07120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005021	Phage terminase		PF03354|PTHR41287
ALIDE_RS07130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002711|IPR003615	HNH endonuclease|HNH nuclease	GO:0003676|GO:0004519	PF01844|SM00507
ALIDE_RS07135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006427|IPR006944	Bacteriophage/Gene transfer agent portal protein|Phage portal protein, HK97		PF04860|TIGR01537
ALIDE_RS07140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006433	Prohead protease		PF04586|TIGR01543
ALIDE_RS07145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006444|IPR024455	Phage capsid|Phage major capsid protein, HK97		PF05065|SSF56563|TIGR01554
ALIDE_RS07155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS07160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS07165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF14090
ALIDE_RS07170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010260	Prophage CP4-57 regulatory protein (AlpA)		PF05930
ALIDE_RS07180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762|IPR023109|IPR025166	DNA breaking-rejoining enzyme, catalytic core|Domain of unknown function DUF4102|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF13356|PTHR30629|PTHR30629:SF4|SSF56349
ALIDE_RS07190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000834	Peptidase M14, carboxypeptidase A	GO:0004181|GO:0006508|GO:0008270	G3DSA:3.40.630.10|PF00246|SM00631|SSF53187
ALIDE_RS07195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000629|IPR001650|IPR011545|IPR014001|IPR027417|IPR028622	ATP-dependent RNA helicase DEAD-box, conserved site|ATP-dependent RNA helicase RhlE|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0003676|GO:0004004|GO:0005524|GO:0042255	G3DSA:3.40.50.300|MF_00968|PF00270|PF00271|PS00039|PTHR24031|PTHR24031:SF0|SM00487|SM00490|SSF52540
ALIDE_RS07200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR022374|IPR027417|IPR032781	AAA+ ATPase domain|ABC transporter, ATP-binding protein, ChvD|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12848|PS00211|PTHR19211|PTHR19211:SF7|SM00382|SSF52540|TIGR03719
ALIDE_RS07205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011852	TRAP transporter solute receptor, TAXI family		G3DSA:3.40.190.10|PF16868|PTHR30024|PTHR30024:SF13|SSF53850
ALIDE_RS07210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005321|IPR016117	ArgJ-like domain|Peptidase S58, DmpA		G3DSA:3.60.70.12|PF03576|PTHR36512|PTHR36512:SF3|SSF56266
ALIDE_RS07215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007332	Protein of unknown function DUF411		PF04214
ALIDE_RS07220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000923|IPR008972|IPR033138	Blue (type 1) copper domain|Cupredoxin|Multicopper oxidases, conserved site	GO:0005507|GO:0009055	G3DSA:2.60.40.420|PF00127|PS00079|SSF49503
ALIDE_RS07230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003740	Uncharacterised membrane protein YitT		PF02588|PTHR33545|PTHR33545:SF5
ALIDE_RS07235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR008250|IPR018303|IPR023214|IPR023299|IPR027256	HAD-like domain|P-type ATPase|P-type ATPase, A  domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB	GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0046872	G3DSA:2.70.150.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00702|PR00119|PR00941|PS00154|PTHR24093|PTHR24093:SF317|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01512|TIGR01525
ALIDE_RS07240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000551|IPR009061	MerR-type HTH domain|Putative DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.1660.10|PF13411|PR00040|PTHR30204|PTHR30204:SF18|SM00422|SSF46955
ALIDE_RS07245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR030802	ABC transporter permease MalE	GO:0006810|GO:0043190	PF02405
ALIDE_RS07250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003399	Mce/MlaD		PF02470
ALIDE_RS07260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015813	Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824	G3DSA:3.20.20.60|PF13714|PTHR21631|PTHR21631:SF18|SSF51621
ALIDE_RS07265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000631|IPR004443|IPR029056|IPR030677	ATP-dependent (S)-NAD(P)H-hydrate dehydratase|Bifunctional NAD(P)H-hydrate repair enzyme Nnr|Ribokinase-like|YjeF N-terminal domain	GO:0052855	G3DSA:3.40.1190.20|G3DSA:3.40.50.10260|MF_01965|MF_01966|PF01256|PF03853|PIRSF017184|PTHR12592|PTHR12592:SF0|SSF53613|SSF64153|TIGR00196
ALIDE_RS07270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR023753	FAD dependent oxidoreductase|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|PTHR13847|PTHR13847:SF148|SSF51905
ALIDE_RS07275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000120|IPR020556|IPR023631	Amidase|Amidase signature domain|Amidase, conserved site	GO:0016884	G3DSA:3.90.1300.10|PF01425|PS00571|PTHR11895|SSF75304
ALIDE_RS07280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001865|IPR005706|IPR018130|IPR023591	Ribosomal protein S2|Ribosomal protein S2, bacteria/mitochondria/plastid|Ribosomal protein S2, conserved site|Ribosomal protein S2, flavodoxin-like domain	GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0015935	G3DSA:1.10.287.610|G3DSA:3.40.50.10490|MF_00291_B|PF00318|PR00395|PS00962|PTHR12534|SSF52313|TIGR01011
ALIDE_RS07285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001816|IPR009060|IPR014039|IPR018101	Translation elongation factor EFTs/EF1B|Translation elongation factor EFTs/EF1B, dimerisation|Translation elongation factor Ts, conserved site|UBA-like	GO:0003746|GO:0005515|GO:0005622|GO:0006414	G3DSA:1.10.286.20|G3DSA:1.10.8.10|G3DSA:3.30.479.20|MF_00050|PF00889|PS01127|PTHR11741|SSF46934|SSF54713|TIGR00116
ALIDE_RS07290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001048|IPR011817|IPR015963	Aspartate/glutamate/uridylate kinase|Uridylate kinase|Uridylate kinase, bacteria	GO:0005737|GO:0006221|GO:0009041|GO:0033862	G3DSA:3.40.1160.10|MF_01220_B|PF00696|PIRSF005650|PTHR21499|PTHR21499:SF23|SSF53633|TIGR02075
ALIDE_RS07295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002661|IPR023584	Ribosome recycling factor|Ribosome recycling factor domain	GO:0006412	G3DSA:1.10.132.20|MF_00040|PF01765|PTHR20982|SSF55194|TIGR00496
ALIDE_RS07300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001441|IPR018520	Decaprenyl diphosphate synthase-like|Di-trans-poly-cis-decaprenylcistransferase-like, conserved site	GO:0016765	G3DSA:3.40.1180.10|MF_01139|PF01255|PS01066|PTHR10291|SSF64005|TIGR00055
ALIDE_RS07305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000374	Phosphatidate cytidylyltransferase	GO:0016020|GO:0016772	PF01148|PS01315|PTHR13773|PTHR13773:SF0
ALIDE_RS07310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003821|IPR013512|IPR013644|IPR016040|IPR026877	1-deoxy-D-xylulose 5-phosphate reductoisomerase|1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal|1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal|DXP reductoisomerase C-terminal domain|NAD(P)-binding domain	GO:0005515|GO:0008299|GO:0030604|GO:0046872|GO:0055114|GO:0070402	G3DSA:1.10.1740.10|G3DSA:3.40.50.720|MF_00183|PF02670|PF08436|PF13288|PIRSF006205|PTHR30525|SSF51735|SSF55347|SSF69055|TIGR00243
ALIDE_RS07315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001478|IPR004387|IPR008915	PDZ domain|Peptidase M50|Peptidase M50, putative membrane-associated zinc metallopeptidase	GO:0004222|GO:0005515|GO:0006508|GO:0016021	G3DSA:2.30.42.10|PF02163|PTHR22939|PTHR22939:SF78|SM00228|SSF50156|TIGR00054
ALIDE_RS07320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000184|IPR010827|IPR023707	Bacterial surface antigen (D15)|Outer membrane protein assembly factor BamA|Surface antigen variable number	GO:0019867|GO:0071709	G3DSA:2.40.160.50|MF_01430|PF01103|PF07244|PIRSF006076|PTHR12815|PTHR12815:SF11|TIGR03303
ALIDE_RS07325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005632|IPR024930	Chaperone protein Skp|Skp domain	GO:0051082	G3DSA:3.30.910.20|PF03938|PIRSF002094|PTHR35089|PTHR35089:SF1|SM00935|SSF111384
ALIDE_RS07330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001451|IPR007691|IPR011004|IPR020573	Hexapeptide repeat|Trimeric LpxA-like|UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD|UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region	GO:0009245|GO:0016410|GO:0016747	G3DSA:2.160.10.10|MF_00523|PF00132|PF04613|PF14602|PTHR22572|PTHR22572:SF117|SSF51161|TIGR01853
ALIDE_RS07335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010084|IPR013114|IPR029069	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ|Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ|HotDog domain	GO:0005737|GO:0006633|GO:0016836	G3DSA:3.10.129.10|MF_00406|PF07977|PTHR30272|SSF54637|TIGR01750
ALIDE_RS07340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001451|IPR010137|IPR011004|IPR029098	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase|Hexapeptide repeat|Trimeric LpxA-like|Udp N-acetylglucosamine O-acyltransferase, C-terminal	GO:0008610|GO:0008780	G3DSA:1.20.1180.10|G3DSA:2.160.10.10|MF_00387|PF00132|PF13720|PIRSF000456|PTHR23416|PTHR23416:SF8|SSF51161|TIGR01852
ALIDE_RS07345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003835	Glycosyl transferase, family 19	GO:0008915|GO:0009245	G3DSA:3.40.50.2000|MF_00392|PF02684|PTHR30372|PTHR30372:SF0|SSF53756|TIGR00215
ALIDE_RS07350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001352|IPR012337|IPR022898|IPR024567	Ribonuclease H-like domain|Ribonuclease HII|Ribonuclease HII/HIII|Ribonuclease HII/HIII domain	GO:0003676|GO:0003723|GO:0004523	G3DSA:3.30.420.10|MF_00052_B|PF01351|PTHR10954|SSF53098
ALIDE_RS07355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001537|IPR029026|IPR029028|IPR029064	50S ribosomal protein L30e-like|Alpha/beta knot methyltransferases|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type	GO:0003723|GO:0006396|GO:0008173	G3DSA:3.30.1330.30|G3DSA:3.40.1280.10|PF00588|PTHR12029|SSF55315|SSF75217
ALIDE_RS07360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762|IPR023109|IPR025166	DNA breaking-rejoining enzyme, catalytic core|Domain of unknown function DUF4102|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF13356|PTHR30349|PTHR30349:SF20|SSF56349
ALIDE_RS07365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS07370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS07380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000146|IPR028343|IPR033391	Fructose-1,6-bisphosphatase|Fructose-1,6-bisphosphatase class 1|Fructose-1-6-bisphosphatase class I, N-terminal	GO:0005975|GO:0042132|GO:0042578	G3DSA:3.30.540.10|G3DSA:3.40.190.80|MF_01855|PF00316|PIRSF000904|PIRSF500210|PR00115|PTHR11556|SSF56655
ALIDE_RS07385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001930|IPR012779|IPR014782|IPR024601	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase|Peptidase M1, alanyl aminopeptidase|Peptidase M1, alanyl aminopeptidase, C-terminal|Peptidase M1, membrane alanine aminopeptidase, N-terminal	GO:0006508|GO:0008237|GO:0008270	G3DSA:1.10.390.10|G3DSA:1.25.50.10|PF01433|PF11940|PR00756|PTHR11533|PTHR11533:SF152|SSF55486|SSF63737|TIGR02414
ALIDE_RS07390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000352|IPR004374|IPR005139|IPR014720	Double-stranded RNA-binding domain|Peptide chain release factor|Peptide chain release factor 2|Peptide chain release factor class I/class II	GO:0003747|GO:0005737|GO:0006415|GO:0016149	G3DSA:1.20.58.410|G3DSA:3.30.160.20|PF00472|PF03462|PS00745|PTHR11075|PTHR11075:SF6|SM00937|SSF75620|TIGR00020
ALIDE_RS07395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010190|IPR016040|IPR032094	Diaminopimelate dehydrogenase, Ddh|Meso-diaminopimelate D-dehydrogenase, C-terminal|NAD(P)-binding domain	GO:0009089|GO:0047850	G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF16654|PIRSF025648|SSF51735|SSF55347|TIGR01921
ALIDE_RS07400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR000639|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like	GO:0003824	G3DSA:3.40.50.1820|PF00561|PR00111|PR00412|PTHR10992|SSF53474
ALIDE_RS07405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:3.40.190.10|PF13343|PTHR30006|PTHR30006:SF5|SSF53850
ALIDE_RS07410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30183|SSF161098
ALIDE_RS07415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2	GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0016887|GO:0043190	G3DSA:3.40.50.300|PF00005|PF08402|PS00211|PTHR24220|PTHR24220:SF150|SM00382|SSF50331|SSF52540
ALIDE_RS07420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001395|IPR023210	Aldo/keto reductase/potassium channel subunit beta|NADP-dependent oxidoreductase domain		G3DSA:3.20.20.100|PF00248|PTHR11732|PTHR11732:SF112|SSF51430
ALIDE_RS07425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004369|IPR007214	Prolyl-tRNA editing protein, YbaK/EbsC|YbaK/aminoacyl-tRNA synthetase-associated domain	GO:0002161	G3DSA:3.90.960.10|PF04073|PIRSF006181|PTHR30411|PTHR30411:SF0|SSF55826|TIGR00011
ALIDE_RS07430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003811	Glycerol-3-phosphate acyltransferase, PlsY	GO:0005886|GO:0008654|GO:0043772	MF_01043|PF02660|PTHR30309|PTHR30309:SF0|SM01207|TIGR00023
ALIDE_RS07435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006674	HD domain		G3DSA:1.10.3210.10|SSF109604
ALIDE_RS07440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011969|IPR021109	Aspartic peptidase domain|Clan AA aspartic peptidase, C-terminal		PF13975|PTHR41535|PTHR41535:SF1|SSF50630|TIGR02281
ALIDE_RS07445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007551	Protein of unknown function DUF520		G3DSA:3.30.70.860|G3DSA:3.30.70.990|MF_00632|PF04461|PTHR30476|PTHR30476:SF0|SSF89963
ALIDE_RS07450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003170|IPR006094|IPR011601|IPR016166|IPR016167|IPR016169	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD linked oxidase, N-terminal|FAD-binding, type 2|FAD-binding, type 2, subdomain 1|UDP-N-acetylenolpyruvoylglucosamine reductase|UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal	GO:0003824|GO:0008762|GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.30.43.10|G3DSA:3.30.465.10|G3DSA:3.90.78.10|MF_00037|PF01565|PF02873|PTHR21071|PTHR21071:SF6|SSF56176|SSF56194|TIGR00179
ALIDE_RS07455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005530	SPW repeat		PF03779
ALIDE_RS07460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003744	Protein of unknown function DUF165		PF02592|PTHR34300|PTHR34300:SF1|TIGR00697
ALIDE_RS07465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014729|IPR018317	Queuosine biosynthesis protein QueC|Rossmann-like alpha/beta/alpha sandwich fold		G3DSA:3.40.50.620|MF_01633|PF06508|PIRSF006293|PTHR11587|PTHR11587:SF3|SSF52402|TIGR00364
ALIDE_RS07470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002821|IPR008040	Hydantoinase/oxoprolinase|Hydantoinaseoxoprolinase, N-terminal	GO:0016787	PF01968|PF05378|PTHR11365|PTHR11365:SF2|SSF53067
ALIDE_RS07475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003692	Hydantoinase B/oxoprolinase	GO:0003824	PF02538
ALIDE_RS07480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016750	Acetophenone carboxylase beta subunit/Acetone carboxylase gamma subunit		PF08882|PIRSF019217
ALIDE_RS07485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002078|IPR002197|IPR003018|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417	AAA+ ATPase domain|DNA binding HTH domain,  Fis-type|GAF domain|Homeodomain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site	GO:0003677|GO:0005515|GO:0005524|GO:0006355|GO:0008134|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00158|PF01590|PF02954|PR01590|PS00675|PS00676|PS00688|PTHR32071|SM00382|SSF46689|SSF52540
ALIDE_RS07490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001518|IPR014729|IPR018223|IPR023437|IPR024073|IPR024074	Argininosuccinate synthase|Argininosuccinate synthase, conserved site|Argininosuccinate synthase, type 2 subfamily|Argininosuccinate synthetase mutimerisation domain, C-terminal tail|Argininosuccinate synthetase, catalytic/multimerisation domain body|Rossmann-like alpha/beta/alpha sandwich fold	GO:0004055|GO:0005524|GO:0006526|GO:0042803	G3DSA:1.10.287.400|G3DSA:3.40.50.620|G3DSA:3.90.1260.10|MF_00581|PF00764|PS00564|PS00565|PTHR11587|PTHR11587:SF2|SSF52402|SSF69864|TIGR00032
ALIDE_RS07495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009664|IPR011051|IPR014710	Protein of unknown function DUF1255|RmlC-like cupin domain|RmlC-like jelly roll fold		G3DSA:2.60.120.10|MF_01537|PF06865|PTHR36540|PTHR36540:SF1|SSF51182
ALIDE_RS07500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008816	Glycine zipper 2TM domain	GO:0019867	PF05433|PTHR35603
ALIDE_RS07505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006504|IPR006660|IPR012336	Arsenate reductase-like|Thioredoxin-like fold|Transcriptional regulator Spx/MgsR		G3DSA:3.40.30.10|PF03960|PTHR30041|PTHR30041:SF3|SSF52833|TIGR01617
ALIDE_RS07510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001645|IPR004101|IPR013221|IPR018109	Folylpolyglutamate synthetase|Folylpolyglutamate synthetase, conserved site|Mur ligase, C-terminal|Mur ligase, central	GO:0004326|GO:0005524|GO:0009058|GO:0009396|GO:0016874	G3DSA:3.40.1190.10|G3DSA:3.90.190.20|PF02875|PF08245|PIRSF001563|PS01012|PTHR11136|SSF53244|SSF53623|TIGR01499
ALIDE_RS07515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007730	Sporulation-related domain	GO:0042834	G3DSA:3.30.70.1070|PF05036|PTHR38687|PTHR38687:SF1|SSF110997
ALIDE_RS07520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003825|IPR018895	Colicin V production, CvpA|Protein of unknown function DUF2474	GO:0009403|GO:0016020	PF02674|PF10617|PTHR36926|PTHR36926:SF1
ALIDE_RS07525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000836|IPR005854|IPR017932|IPR029055|IPR029057	Amidophosphoribosyltransferase|Glutamine amidotransferase type 2 domain|Nucleophile aminohydrolases, N-terminal|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like	GO:0004044|GO:0009113|GO:0009116	G3DSA:3.40.50.2020|G3DSA:3.60.20.10|MF_01931|PF00156|PF13537|PIRSF000485|PTHR11907|PTHR11907:SF0|SSF53271|SSF56235|TIGR01134
ALIDE_RS07530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000277|IPR006234|IPR015421|IPR015422|IPR015424	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|O-succinylhomoserine sulfhydrylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0030170|GO:0071268	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PTHR11808|PTHR11808:SF36|SSF53383|TIGR01325
ALIDE_RS07535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000924|IPR001412|IPR004527|IPR008925|IPR014729|IPR020058|IPR020061|IPR020751	Aminoacyl-tRNA synthetase, class I, anticodon-binding|Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2|Aminoacyl-tRNA synthetase, class I, conserved site|Glutamate-tRNA ligase, bacterial/mitochondrial|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Rossmann-like alpha/beta/alpha sandwich fold	GO:0000049|GO:0000166|GO:0004812|GO:0004818|GO:0005524|GO:0005737|GO:0006418|GO:0006424|GO:0016876|GO:0043039	G3DSA:1.10.10.350|G3DSA:1.10.1160.10|G3DSA:3.40.50.620|G3DSA:3.90.800.10|MF_00022_B|PF00749|PR00987|PS00178|PTHR11451|PTHR11451:SF41|SSF48163|SSF52374|TIGR00464
ALIDE_RS07570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|PTHR24322|PTHR24322:SF356|SSF51735
ALIDE_RS07585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004291|IPR024463|IPR024474	Transposase TnpC, homeodomain|Transposase, IS66|Zinc-finger binding domain of transposase IS66		PF03050|PF13005|PF13007|PF13817|PTHR33678|PTHR33678:SF1
ALIDE_RS07590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008878	Transposase IS66, Orf2		PF05717|PTHR36455
ALIDE_RS07595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057|IPR010921	Homeodomain-like|Transposase IS3/IS911family|Trp repressor/replication initiator	GO:0003677|GO:0004803|GO:0006313|GO:0043565	G3DSA:1.10.10.60|PF01527|SSF48295
ALIDE_RS07605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337	Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF13683|PTHR32552|PTHR32552:SF26|SSF53098
ALIDE_RS07610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33609|PTHR33609:SF1|SSF46689
ALIDE_RS07615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR024442|IPR024445	ISXO2-like transposase domain|Transposase, zinc-ribbon		PF12760|PF12762|SM01126
ALIDE_RS07630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006197|IPR011991|IPR015927|IPR019759|IPR028360	Peptidase S24, LexA-like|Peptidase S24/S26, beta-ribbon domain|Peptidase S24/S26A/S26B|Peptidase S24/S26A/S26B/S26C|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:2.10.109.10|PF00717|PR00726|PTHR33516|SSF46785|SSF51306
ALIDE_RS07635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS07640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS07645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006061|IPR026045	Ferric binding protein|Solute-binding family 1, conserved site	GO:0005215|GO:0006810	G3DSA:3.40.190.10|PF13416|PIRSF002825|PS01037|PTHR30006|PTHR30006:SF4|SSF53850
ALIDE_RS07650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010127|IPR018968	Phasin|Phasin, subfamily 1		PF09361|TIGR01841
ALIDE_RS07655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006683|IPR029069	HotDog domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR31793|PTHR31793:SF7|SSF54637
ALIDE_RS07660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002638|IPR006406|IPR007229	Nicotinate phosphoribosyltransferase|Nicotinate phosphoribosyltransferase family|Quinolinate phosphoribosyl transferase, C-terminal	GO:0004514|GO:0004516|GO:0009435|GO:0019357	G3DSA:3.20.140.10|MF_00570|PF04095|PIRSF000484|PTHR11098|PTHR11098:SF16|SSF51690|SSF54675|TIGR01514
ALIDE_RS07665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR031566	Putative citrate transporter		PF16980
ALIDE_RS07670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006139|IPR006140|IPR016040|IPR029752	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain	GO:0008152|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF00389|PF02826|PS00065|PTHR10996|SSF51735|SSF52283
ALIDE_RS07675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003798	DNA recombination RmuC		PF02646|PTHR30563
ALIDE_RS07680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001958|IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain|Tetracycline resistance protein TetA/multidrug resistance protein MdtG	GO:0005215|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PR01035|SSF103473
ALIDE_RS07685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005269|IPR031100	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG|LOG family		G3DSA:3.40.50.450|PF03641|PTHR31223|PTHR31223:SF1|SSF102405|TIGR00730
ALIDE_RS07690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003691	Putative fluoride ion transporter CrcB	GO:0016021	MF_00454|PF02537|PTHR28259|TIGR00494
ALIDE_RS07695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:3.40.630.10|SSF53187
ALIDE_RS07700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005133|IPR011759	Cytochrome C oxidase subunit II, transmembrane domain|Na+/H+ antiporter subunit G	GO:0005451|GO:0015672|GO:0015992|GO:0016021|GO:0022900	G3DSA:1.10.287.90|PF03334|PTHR34703|PTHR34703:SF1
ALIDE_RS07705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007208	Na(+)/H(+) antiporter subunit F-like	GO:0015075|GO:0016021|GO:0034220	PF04066|PIRSF028784|PTHR34702|PTHR34702:SF1
ALIDE_RS07710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002758	Na+/H+ antiporter subunit E	GO:0006812|GO:0008324|GO:0016021	PF01899|PIRSF019239|PTHR34584|PTHR34584:SF1
ALIDE_RS07715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit		PF00361|PTHR22773|PTHR22773:SF49
ALIDE_RS07720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001133	NADH-ubiquinone oxidoreductase chain 4L/K	GO:0016651|GO:0042773|GO:0055114	PF00420|PTHR34583|PTHR34583:SF1
ALIDE_RS07725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001516|IPR001750|IPR007182|IPR025383	Domain of unknown function DUF4040|NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal|NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit|Na+/H+ antiporter MnhB subunit-related protein		PF00361|PF00662|PF04039|PF13244|PR01434|PTHR22773|PTHR22773:SF46
ALIDE_RS07730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010994	RuvA domain 2-like		G3DSA:1.10.150.280|PF12836|SSF47781
ALIDE_RS07735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990	Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.25.40.10|PF13432|PF14559|PTHR23083|SSF48452
ALIDE_RS07740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010445	Lipopolysaccharide assembly protein A domain	GO:0005887	PF06305
ALIDE_RS07745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027304	Trigger factor/SurA domain		G3DSA:3.10.50.40|PF13616|PTHR10657|PTHR10657:SF11|SSF109998|SSF54534
ALIDE_RS07750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002634	BolA protein		G3DSA:3.30.70.1500|PF01722|PIRSF003113|PTHR12735|PTHR12735:SF3|SSF82657
ALIDE_RS07755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006008	Intracellular septation protein A	GO:0016021	MF_00189|PF04279|PTHR36917|PTHR36917:SF1|TIGR00997
ALIDE_RS07760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002579|IPR011057|IPR028427	Mss4-like|Peptide methionine sulfoxide reductase|Peptide methionine sulphoxide reductase MrsB	GO:0006979|GO:0016671|GO:0030091|GO:0033743|GO:0055114	G3DSA:2.170.150.20|PF01641|PTHR10173|PTHR10173:SF18|SSF51316|TIGR00357
ALIDE_RS07765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003846	Uncharacterised protein family UPF0061		PF02696|PTHR32057
ALIDE_RS07770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|PTHR24096:SF53|SSF56801
ALIDE_RS07775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|SSF53822
ALIDE_RS07780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF379
ALIDE_RS07785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482
ALIDE_RS07790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PTHR24220|PTHR24220:SF491|SM00382|SSF52540
ALIDE_RS07795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS07800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR006108|IPR006176|IPR008927|IPR013328|IPR016040|IPR018376|IPR029045	3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site|NAD(P)-binding domain	GO:0003824|GO:0003857|GO:0006631|GO:0008152|GO:0016491|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|PS00166|PTHR23309|PTHR23309:SF9|SSF48179|SSF51735|SSF52096
ALIDE_RS07805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020613|IPR020615|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00737|PTHR18919|PTHR18919:SF14|SSF53901|TIGR01930
ALIDE_RS07810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001638	Solute-binding protein  family 3/N-terminal domain of MltF		G3DSA:3.40.190.10|PF00497|PTHR18966|PTHR18966:SF191|SM00062|SSF53850
ALIDE_RS07815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30614|SSF161098|TIGR01726
ALIDE_RS07820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30614|SSF161098|TIGR01726
ALIDE_RS07825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786|IPR020953|IPR025878	Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase, N-terminal, bacteria|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12418|PF12806|PTHR10909|PTHR10909:SF269|SSF47203|SSF56645
ALIDE_RS07830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005025|IPR029039	Flavoprotein-like domain|NADPH-dependent FMN reductase-like	GO:0016491	G3DSA:3.40.50.360|PF03358|SSF52218
ALIDE_RS07835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR12715|SSF103481
ALIDE_RS07855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014819|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Primase, C-terminal 2	GO:0016817	G3DSA:3.40.50.300|PF08707|PF13481|SSF52540
ALIDE_RS07870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762|IPR025166	DNA breaking-rejoining enzyme, catalytic core|Domain of unknown function DUF4102|Integrase, catalytic domain|Integrase-like, catalytic domain	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.443.10|PF00589|PF13356|PTHR30629|PTHR30629:SF4|SSF56349
ALIDE_RS07875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423|IPR010130	Outer membrane efflux protein|Type I secretion outer membrane protein, TolC	GO:0005215|GO:0006810|GO:0019867	G3DSA:1.20.1600.10|PF02321|PTHR30026|PTHR30026:SF3|SSF56954|TIGR01844
ALIDE_RS07880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001763	Rhodanese-like domain		G3DSA:3.40.250.10|PF00581|SM00450|SSF52821
ALIDE_RS07885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000682|IPR020598|IPR029063	Protein-L-isoaspartate(D-aspartate) O-methyltransferase|Ribosomal RNA adenine methylase transferase, N-terminal|S-adenosyl-L-methionine-dependent methyltransferase	GO:0000154|GO:0000179|GO:0004719|GO:0006464|GO:0008649	G3DSA:3.40.50.150|PF01135|PTHR11579|PTHR11579:SF0|SM00650|SSF53335
ALIDE_RS07890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR015893	DNA-binding HTH domain, TetR-type|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal	GO:0003677	G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PF16859|PR00455|PTHR30055|SSF46689|SSF48498
ALIDE_RS07895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002569|IPR028427	Peptide methionine sulfoxide reductase|Peptide methionine sulphoxide reductase MsrA	GO:0006979|GO:0008113|GO:0016671|GO:0030091|GO:0055114	G3DSA:3.30.1060.10|MF_01401|PF01625|PTHR10173|PTHR10173:SF34|SSF55068|TIGR00401
ALIDE_RS07905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR012910	TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain	GO:0004872|GO:0006810|GO:0016020	G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PTHR30069|PTHR30069:SF13|SSF56935
ALIDE_RS07915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003370|IPR014047	Chromate transporter|Chromate transporter, long chain	GO:0015109|GO:0015703	PF02417|PIRSF004810|PTHR33567|PTHR33567:SF3|TIGR00937
ALIDE_RS07920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004776	Auxin efflux carrier	GO:0016021|GO:0055085	PF03547|PTHR31752|PTHR31752:SF13
ALIDE_RS07925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000659|IPR011576|IPR012349	FMN-binding split barrel|Pyridoxamine 5'-phosphate oxidase|Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain	GO:0004733|GO:0008615|GO:0010181|GO:0016491|GO:0055114	G3DSA:2.30.110.10|PF01243|PTHR10851|PTHR10851:SF0|SSF50475|TIGR00558
ALIDE_RS07930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006840|IPR013024	Butirosin biosynthesis, BtrG-like|ChaC-like protein		G3DSA:3.10.490.10|PF04752|PTHR12192|PTHR12192:SF9|SSF110857
ALIDE_RS07935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006664|IPR006665	OmpA-like domain|Outer membrane protein, bacterial	GO:0009279|GO:0016021	G3DSA:3.30.1330.60|PF00691|PR01021|SSF103088
ALIDE_RS07940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002763	Protein of unknown function DUF72		G3DSA:3.20.20.410|PF01904|PTHR30348|SSF117396
ALIDE_RS07950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003029|IPR006641|IPR010994|IPR012337|IPR012340|IPR018974|IPR022967|IPR023097|IPR023319|IPR023323|IPR032639	Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribonuclease H-like domain|RuvA domain 2-like|S1 domain|Tex RuvX-like domain|Tex protein, YqgF-like domain|Tex-like domain|Tex-like protein, HTH domain|Tex-like protein, N-terminal|YqgF/RNase H-like domain	GO:0003676|GO:0006139	G3DSA:1.10.10.650|G3DSA:1.10.150.310|G3DSA:1.10.3500.10|G3DSA:2.40.50.140|G3DSA:3.30.420.140|PF00575|PF09371|PF12836|PF16921|PTHR10724|PTHR10724:SF1|SM00316|SM00732|SSF158832|SSF47781|SSF50249|SSF53098
ALIDE_RS07955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS07960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002878|IPR012340|IPR022002	Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold		PF01796|PF12172|PTHR34075|PTHR34075:SF2|SSF50249
ALIDE_RS07965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039	Thiolase|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PIRSF000429|PTHR18919|PTHR18919:SF108|SSF53901
ALIDE_RS07970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS07975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PTHR24321|PTHR24321:SF6|SSF51735
ALIDE_RS07980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS07985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16
ALIDE_RS07990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000843|IPR010982|IPR028082	Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I|Transcription regulator HTH, LacI	GO:0003677|GO:0003700|GO:0006355	G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PS00356|PTHR30146|SM00354|SSF47413|SSF53822
ALIDE_RS07995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002020|IPR016142|IPR016143	Citrate synthase|Citrate synthase-like, large alpha subdomain|Citrate synthase-like, small alpha subdomain	GO:0046912	G3DSA:1.10.230.10|G3DSA:1.10.580.10|PF00285|PR00143|PTHR11739|PTHR11739:SF4|SSF48256
ALIDE_RS08000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS08005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS08010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS08015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006680|IPR032466	Amidohydrolase-related|Metal-dependent hydrolase	GO:0016787	G3DSA:3.20.20.140|PF04909|PTHR21240|PTHR21240:SF9|SSF51556
ALIDE_RS08020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF14|SM00346|SSF46785|SSF55781
ALIDE_RS08025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013976	Metal-dependent hydrolase HDOD		G3DSA:1.10.3150.10|PF08668|PTHR33525|PTHR33525:SF3|SSF109604
ALIDE_RS08030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011234	Fumarylacetoacetase, C-terminal-related	GO:0003824|GO:0008152	G3DSA:3.90.850.10|PTHR30143|SSF56529
ALIDE_RS08035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002168|IPR013094|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-3|Lipase, GDXG, putative histidine active site	GO:0008152|GO:0016787	G3DSA:3.40.50.1820|PF07859|PS01173|PTHR23024|PTHR23024:SF24|SSF53474
ALIDE_RS08040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR006683|IPR006684|IPR016181|IPR029069	Acyl-CoA N-acyltransferase|Acyl-CoA thioester hydrolase YbgC/YbaW family|GNAT domain|HotDog domain|Thioesterase domain	GO:0008080|GO:0016787	G3DSA:3.10.129.10|G3DSA:3.40.630.30|PF03061|PF13673|PTHR13355|PTHR13355:SF8|SSF54637|SSF55729|TIGR00051
ALIDE_RS08045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005624	Haem-degrading		PF03928|PTHR34309|PTHR34309:SF1|SSF143744
ALIDE_RS08050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000792|IPR001789|IPR011006|IPR011991	CheY-like superfamily|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PTHR26402|PTHR26402:SF613|SM00421|SM00448|SSF52172
ALIDE_RS08055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR004358	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|PTHR24423|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS08060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23523|PTHR23523:SF1|SSF103473
ALIDE_RS08065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002125|IPR016192|IPR016193	APOBEC/CMP deaminase, zinc-binding|Cytidine and deoxycytidylate deaminases, zinc-binding|Cytidine deaminase-like	GO:0003824|GO:0008270|GO:0016787	G3DSA:3.40.140.10|PF00383|PS00903|PTHR11079|SSF53927
ALIDE_RS08070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006222|IPR013977|IPR017703	Glycine cleavage T-protein, C-terminal barrel domain|Glycine cleavage T-protein-like, N-terminal|YgfZ/GcvT conserved site		G3DSA:3.30.70.1400|PF01571|PF08669|PTHR22602|PTHR22602:SF0|SSF103025|TIGR03317
ALIDE_RS08075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003770|IPR013087	Uncharacterised protein family UPF0755, YceG-like|Zinc finger C2H2-type/integrase DNA-binding domain	GO:0003676	G3DSA:3.30.160.60|PF02618|PTHR30518|PTHR30518:SF2|TIGR00247
ALIDE_RS08080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018094|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Thymidylate kinase	GO:0004798|GO:0005524|GO:0006233	G3DSA:3.40.50.300|MF_00165|PF02223|PTHR10344|SSF52540|TIGR00041
ALIDE_RS08085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027417	P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF13177|PTHR11669|PTHR11669:SF8|SSF52540
ALIDE_RS08090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009875	PilZ domain	GO:0035438	PF07238
ALIDE_RS08095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001130|IPR015991|IPR018228|IPR032466	Deoxyribonuclease, TatD-related, conserved site|Metal-dependent hydrolase|TatD family|Uncharacterised deoxyribonuclease TatD-type	GO:0004536|GO:0016788|GO:0016888	G3DSA:3.20.20.140|PF01026|PIRSF005902|PS01091|PS01137|PTHR10060|PTHR10060:SF20|SSF51556|TIGR00010
ALIDE_RS08100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002110|IPR020683	Ankyrin repeat|Ankyrin repeat-containing domain	GO:0005515	G3DSA:1.25.40.20|PF12796|PTHR24198|SM00248|SSF48403
ALIDE_RS08110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016772	Uncharacterised conserved protein UCP020408		PF10087
ALIDE_RS08115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|PTHR11751|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS08120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005829|IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain|Sugar transporter, conserved site	GO:0005215|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PS00216|PS00217|PTHR23508|PTHR23508:SF18|SSF103473
ALIDE_RS08125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005501|IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel|Uncharacterised protein family UPF0271, LamB/YcsF	GO:0003824|GO:0005975	MF_00691|PF03746|PTHR30292|PTHR30292:SF0|SSF88713
ALIDE_RS08130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009906|IPR016938	Protein of unknown function DUF1445|Uncharacterised protein family UPF0317		G3DSA:3.40.1640.10|MF_01830|PF07286|PIRSF029755|PTHR32022|SSF160920
ALIDE_RS08135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003778|IPR003833|IPR010016|IPR024946|IPR029000	Arginine repressor C-terminal-like domain|Carboxyltransferase domain, subdomain A and B|Carboxyltransferase domain, subdomain C and D|Cyclophilin-like domain|KipI family		G3DSA:2.40.100.10|G3DSA:3.30.1360.40|PF02626|PF02682|PTHR34698|PTHR34698:SF2|SM00796|SM00797|SSF160467|SSF50891|TIGR00370|TIGR00724
ALIDE_RS08140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR001882|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin-binding site|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain|Rudiment single hybrid motif|Single hybrid motif	GO:0003824|GO:0005524	G3DSA:2.40.50.100|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF00364|PF02785|PF02786|PS00188|PS00867|PTHR18866|SM00878|SSF51230|SSF51246|SSF52440|SSF56059
ALIDE_RS08145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR011527|IPR011917|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter type 1, transmembrane domain|ABC transporter, conserved site|ABC transporter, lipid A export, MsbA|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0006810|GO:0016021|GO:0016887|GO:0034040|GO:0042626|GO:0055085	G3DSA:1.20.1560.10|G3DSA:3.40.50.300|PF00005|PF00664|PS00211|PTHR24221|SM00382|SSF52540|SSF90123|TIGR02203
ALIDE_RS08150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007195|IPR011659|IPR014167|IPR015943	Tol-Pal system beta propeller repeat-containing protein, TolB|TolB, N-terminal|WD40-like Beta Propeller|WD40/YVTN repeat-like-containing domain	GO:0005515|GO:0015031|GO:0017038|GO:0042597	G3DSA:2.130.10.10|G3DSA:3.40.50.10070|MF_00671|PF04052|PF07676|PTHR11731|PTHR11731:SF123|SSF52964|SSF69304|TIGR02800
ALIDE_RS08155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006664|IPR006665|IPR006690|IPR014169	OmpA-like domain|Outer membrane protein, OmpA-like, conserved site|Outer membrane protein, bacterial|Peptidoglycan-associated lipoprotein	GO:0009279|GO:0016021	G3DSA:3.30.1330.60|PF00691|PR01021|PS01068|PTHR30128|PTHR30128:SF18|SSF103088|TIGR02802
ALIDE_RS08160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990|IPR014162|IPR032519	Tetratricopeptide-like helical domain|Tol-Pal system, YbgF|YbgF, trimerisation domain	GO:0005515|GO:0070206	G3DSA:1.25.40.10|PF13525|PF16331|PTHR26312|PTHR26312:SF74|SSF48452|TIGR02795
ALIDE_RS08165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000594|IPR016040	NAD(P)-binding domain|THIF-type NAD/FAD binding fold	GO:0008641	G3DSA:3.40.50.720|PF00899|PTHR10953|PTHR10953:SF159|SSF69572
ALIDE_RS08175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762	DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.443.10|PF00589|PTHR30349|PTHR30349:SF20|SSF56349
ALIDE_RS08195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011991	Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10
ALIDE_RS08200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011335|IPR011604|IPR019080	Exonuclease, phage-type/RecB, C-terminal|Restriction endonuclease  type II-like|YqaJ viral recombinase	GO:0003677|GO:0004518	G3DSA:3.90.320.10|PF09588|SSF52980
ALIDE_RS08245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016071	Staphylococcal nuclease (SNase-like), OB-fold		G3DSA:2.40.50.90|PF00565|PTHR12302|SM00318|SSF50199
ALIDE_RS08250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013424	PEP-CTERM protein-sorting domain		PF07589|TIGR02595
ALIDE_RS08265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001387|IPR010982	Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain	GO:0003677|GO:0043565	G3DSA:1.10.260.40|PF01381|SM00530|SSF47413
ALIDE_RS08285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007693|IPR007694|IPR016136|IPR027417	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal|DNA helicase, DnaB-like, C-terminal|DNA helicase, DnaB-like, N-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0003678|GO:0005524|GO:0006260	G3DSA:1.10.860.10|G3DSA:3.40.50.300|PF00772|PF03796|PTHR30153|SSF48024|SSF52540
ALIDE_RS08290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				SSF54060
ALIDE_RS08300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008822	Crossover junction endodeoxyribonuclease, RusA-like	GO:0000287|GO:0006281|GO:0006310	G3DSA:3.30.1330.70|SSF103084
ALIDE_RS08305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009797	Protein of unknown function DUF1367		PF07105
ALIDE_RS08340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025267	Protein of unknown function DUF4043		PF13252
ALIDE_RS08370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025474	Domain of unknown function DUF4325		PF14213
ALIDE_RS08385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003488	DNA recombination-mediator protein A	GO:0009294	G3DSA:3.40.50.450|PF02481|PTHR32039|PTHR32039:SF8|SSF102405
ALIDE_RS08445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015943	WD40/YVTN repeat-like-containing domain	GO:0005515	G3DSA:2.130.10.10|SSF82171
ALIDE_RS08450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032124	Bacteriophage F116-like holin		PF16082
ALIDE_RS08455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023346|IPR023347	Lysozyme domain|Lysozyme-like domain	GO:0003796	G3DSA:1.10.530.40|SSF53955
ALIDE_RS08470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010985|IPR013321|IPR031807	Arc-type ribbon-helix-helix|HicB-like antitoxin of toxin-antitoxin system|Ribbon-helix-helix	GO:0006355	G3DSA:1.10.1220.10|PF15919|PTHR34873|PTHR34873:SF2|SSF143100|SSF47598
ALIDE_RS08475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012933	HicA mRNA interferase family	GO:0003729	G3DSA:3.30.920.30|PF07927|SSF54786
ALIDE_RS08500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762	DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.443.10|PF00589|PTHR30349|PTHR30349:SF36|SSF56349
ALIDE_RS08510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002559|IPR008490	Transposase InsH, N-terminal|Transposase, IS4-like	GO:0003677|GO:0004803|GO:0006313	PF01609|PF05598|PTHR35604|PTHR35604:SF2
ALIDE_RS08515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002611|IPR003593|IPR027417|IPR028350	AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase	GO:0005524	G3DSA:3.40.50.300|PF01695|PIRSF003073|PTHR30050|PTHR30050:SF6|SM00382|SSF52540
ALIDE_RS08520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337	Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PTHR35004|PTHR35004:SF2
ALIDE_RS08535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762|IPR025166	DNA breaking-rejoining enzyme, catalytic core|Domain of unknown function DUF4102|Integrase, catalytic domain|Integrase-like, catalytic domain	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.443.10|PF00589|PF13356|PTHR30629|PTHR30629:SF4|SSF56349
ALIDE_RS08540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015168	SsuA/THI5-like		G3DSA:3.40.190.10|PF09084|PTHR30024|PTHR30024:SF8|SSF53850
ALIDE_RS08545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000189|IPR008258|IPR018392|IPR023346	LysM domain|Lysozyme-like domain|Prokaryotic transglycosylase, active site|Transglycosylase SLT domain 1	GO:0000270|GO:0008933|GO:0016020	G3DSA:1.10.530.10|G3DSA:3.10.350.10|PF01464|PF01476|PS00922|PTHR21666|PTHR21666:SF206|SSF53955|SSF54106
ALIDE_RS08550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001018|IPR001279|IPR017782|IPR032282	Beta-lactamase, class-B, conserved site|Hydroxyacylglutathione hydrolase|Hydroxyacylglutathione hydrolase, C-terminal domain|Metallo-beta-lactamase	GO:0004416|GO:0008270|GO:0008800|GO:0017001|GO:0019243	G3DSA:3.60.15.10|MF_01374|PF00753|PF16123|PIRSF005457|PS00743|PTHR11935|PTHR11935:SF7|SM00849|SSF56281|TIGR03413
ALIDE_RS08555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013216|IPR029063	Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008152|GO:0008168	G3DSA:3.40.50.150|PF08241|PTHR10108|PTHR10108:SF836|SSF53335
ALIDE_RS08560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002156|IPR012337|IPR022892	Ribonuclease H|Ribonuclease H domain|Ribonuclease H-like domain	GO:0003676|GO:0004523	G3DSA:3.30.420.10|MF_00042|PF00075|PTHR10642|SSF53098
ALIDE_RS08565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004838|IPR004839|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0009058|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PS00105|PTHR11751|PTHR11751:SF306|SSF53383
ALIDE_RS08570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein		G3DSA:3.50.30.40|PF03737|PTHR33254|PTHR33254:SF5|SSF89562
ALIDE_RS08575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein		G3DSA:3.50.30.40|PF03737|PTHR33254|PTHR33254:SF5|SSF89562
ALIDE_RS08580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|PTHR30346:SF6|SSF46785|SSF53850
ALIDE_RS08585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001638	Solute-binding protein  family 3/N-terminal domain of MltF		G3DSA:3.40.190.10|PF00497|PTHR30085|PTHR30085:SF2|SM00062|SSF53850
ALIDE_RS08590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein		G3DSA:3.50.30.40|PF03737|PTHR33254|PTHR33254:SF5|SSF89562
ALIDE_RS08595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS08605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012336|IPR013766	Thioredoxin domain|Thioredoxin-like fold	GO:0045454	G3DSA:3.40.30.10|PF00085|SSF52833
ALIDE_RS08610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001453|IPR005110|IPR005111	MoaB/Mog domain|MoeA, C-terminal, domain IV|MoeA, N-terminal and linker domain	GO:0032324	G3DSA:2.170.190.11|G3DSA:2.40.340.10|G3DSA:3.40.980.10|G3DSA:3.90.105.10|PF00994|PF03453|PF03454|PTHR10192|SM00852|SSF53218|SSF63867|SSF63882|TIGR00177
ALIDE_RS08615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR016181	Acyl-CoA N-acyltransferase|GNAT domain	GO:0008080	G3DSA:3.40.630.30|PF00583|PTHR23091|PTHR23091:SF251|SSF55729
ALIDE_RS08620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013482|IPR025877|IPR029044	MobA-like NTP transferase|Molybdenum cofactor guanylyltransferase|Nucleotide-diphospho-sugar transferases	GO:0003824|GO:0006777	G3DSA:3.90.550.10|MF_00316|PF12804|PTHR19136|PTHR19136:SF81|SSF53448|TIGR02665
ALIDE_RS08625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000385|IPR006638|IPR007197|IPR010505|IPR013483|IPR013785	Aldolase-type TIM barrel|Elongator protein 3/MiaB/NifB|MoaA/nifB/pqqE, iron-sulphur binding, conserved site|Molybdenum cofactor biosynthesis protein A|Molybdenum cofactor synthesis C-terminal|Radical SAM	GO:0003824|GO:0006777|GO:0019008|GO:0046872|GO:0051536|GO:0051539	G3DSA:3.20.20.70|MF_01225_B|PF04055|PF06463|PF13353|PS01305|PTHR22960|SM00729|SSF102114|TIGR02666
ALIDE_RS08630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029095	NarX-like, N-terminal		PF13675
ALIDE_RS08635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021312	Protein of unknown function DUF2889		PF11136
ALIDE_RS08640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|PTHR11699|SSF53720
ALIDE_RS08645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004131	Pyrophosphate-energised proton pump	GO:0004427|GO:0009678|GO:0015992|GO:0016020	MF_01129|PF03030|PIRSF001265|PTHR31998|PTHR31998:SF0|TIGR01104
ALIDE_RS08650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008162	Inorganic pyrophosphatase	GO:0000287|GO:0004427|GO:0005737|GO:0006796	G3DSA:3.90.80.10|MF_00209|PF00719|PS00387|PTHR10286|SSF50324
ALIDE_RS08655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002545	CheW-like domain	GO:0004871|GO:0006935|GO:0007165	G3DSA:2.30.30.40|G3DSA:2.40.50.180|PF01584|PTHR22617|SM00260|SSF50341
ALIDE_RS08660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003660|IPR004089|IPR004090|IPR024478	4HB MCP domain|Chemotaxis methyl-accepting receptor|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain	GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021	G3DSA:1.10.287.950|PF00015|PF00672|PF12729|PR00260|PTHR32089|PTHR32089:SF63|SM00283|SM00304|SSF58104
ALIDE_RS08665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007434|IPR016181	Acyl-CoA N-acyltransferase|Peptidogalycan biosysnthesis/recognition		G3DSA:3.40.630.30|PF04339|PTHR31384|PTHR31384:SF26|SSF55729
ALIDE_RS08670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR010917	TonB-dependent receptor, beta-barrel|TonB-dependent receptor, conserved site	GO:0004872|GO:0006810|GO:0016020	G3DSA:2.40.170.20|PF00593|PS01156|SSF56935
ALIDE_RS08675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003010|IPR003694|IPR014445|IPR014729|IPR022310	Carbon-nitrogen hydrolase|Glutamine-dependent NAD(+) synthetase|NAD(+) synthetase|NAD/GMP synthase|Rossmann-like alpha/beta/alpha sandwich fold	GO:0003952|GO:0005524|GO:0006807|GO:0009435|GO:0016810	G3DSA:3.40.50.620|G3DSA:3.60.110.10|PF00795|PF02540|PIRSF006630|PTHR23090|SSF52402|SSF56317|TIGR00552
ALIDE_RS08680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002187|IPR002332|IPR011322|IPR015867|IPR017918	Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein P-II, urydylation site|Nitrogen regulatory protein PII|Nitrogen regulatory protein PII, conserved site|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	GO:0006808|GO:0030234	G3DSA:3.30.70.120|PF00543|PIRSF039144|PR00340|PS00496|PS00638|PTHR30115|PTHR30115:SF15|SM00938|SSF54913
ALIDE_RS08685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005269|IPR031100	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG|LOG family		G3DSA:3.40.50.450|PF03641|PTHR31223|PTHR31223:SF0|SSF102405|TIGR00730
ALIDE_RS08690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000829	Diacylglycerol kinase, prokaryotic	GO:0004143|GO:0008654|GO:0016020	G3DSA:1.10.3830.10|PF01219|PTHR34299|PTHR34299:SF1
ALIDE_RS08695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010432	RDD		PF06271
ALIDE_RS08700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021455	Protein of unknown function DUF3106		PF11304
ALIDE_RS08705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022064	Protein of unknown function DUF3619		PF12279
ALIDE_RS08710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011991|IPR013249|IPR013324|IPR013325|IPR014284	RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70 like domain|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987	G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF08281|PTHR30173|SSF88659|SSF88946|TIGR02937
ALIDE_RS08715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011766|IPR012000|IPR012001|IPR012846|IPR029035|IPR029061	Acetolactate synthase, large subunit, biosynthetic|DHS-like NAD/FAD-binding domain|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain	GO:0000287|GO:0003824|GO:0003984|GO:0009082|GO:0030976|GO:0050660	G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|PTHR18968|PTHR18968:SF116|SSF52467|SSF52518|TIGR00118
ALIDE_RS08720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004789|IPR019455	Acetolactate synthase, small subunit|Acetolactate synthase, small subunit, C-terminal	GO:0003984|GO:0009082	G3DSA:3.30.70.1150|G3DSA:3.30.70.260|PD002844|PF10369|PF13710|PTHR30239|SSF55021|TIGR00119
ALIDE_RS08725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000506|IPR008927|IPR013023|IPR013116|IPR013328|IPR016040|IPR023753	6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|Acetohydroxy acid isomeroreductase C-terminal|Acetohydroxy acid isomeroreductase, NADPH-binding domain|FAD/NAD(P)-binding domain|Ketol-acid reductoisomerase|NAD(P)-binding domain	GO:0004455|GO:0009082|GO:0016491|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.50.50.60|MF_00435|PF01450|PF07991|PTHR21371|SSF48179|SSF51735|TIGR00465
ALIDE_RS08730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000462|IPR004533	CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--serine O-phosphatidyltransferase	GO:0008654|GO:0016020|GO:0016780	PF01066|PS00379|PTHR15362|TIGR00473
ALIDE_RS08735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR005955|IPR010987|IPR012336	Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Maleylacetoacetate isomerase|Thioredoxin-like fold	GO:0003824|GO:0005515|GO:0005737|GO:0009072	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13417|PTHR11260|PTHR11260:SF289|SSF47616|SSF52833|TIGR01262
ALIDE_RS08740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011234	Fumarylacetoacetase, C-terminal-related	GO:0003824|GO:0008152	G3DSA:3.90.850.10|PF01557|PTHR11820|PTHR11820:SF85|SSF56529
ALIDE_RS08745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005829|IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain|Sugar transporter, conserved site	GO:0005215|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PS00216|PS00217|PTHR24064|PTHR24064:SF234|SSF103473
ALIDE_RS08750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000486|IPR004360|IPR029068	Extradiol ring-cleavage dioxygenase, class I /II|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain	GO:0003824|GO:0006725|GO:0008198|GO:0055114	G3DSA:3.10.180.10|PF00903|PS00082|PTHR21366|PTHR21366:SF4|SSF54593
ALIDE_RS08755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30419|PTHR30419:SF3|SSF46785|SSF53850
ALIDE_RS08760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000891|IPR002034|IPR005668|IPR013709|IPR013785	2-isopropylmalate synthase|2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain|Aldolase-type TIM barrel|Alpha-isopropylmalate/homocitrate synthase, conserved site|Pyruvate carboxyltransferase	GO:0003824|GO:0003852|GO:0009098|GO:0019752|GO:0046912	G3DSA:3.20.20.70|MF_00572|PF00682|PF08502|PS00815|PS00816|PTHR10277|PTHR10277:SF28|SM00917|SSF110921|SSF51569|SSF89000|TIGR00970
ALIDE_RS08765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000891|IPR002034|IPR005671|IPR013709|IPR013785	2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain|2-isopropylmalate synthase, bacterial-type|Aldolase-type TIM barrel|Alpha-isopropylmalate/homocitrate synthase, conserved site|Pyruvate carboxyltransferase	GO:0003824|GO:0003852|GO:0009098|GO:0019752|GO:0046912	G3DSA:3.20.20.70|MF_01025|PF00682|PF08502|PS00815|PS00816|PTHR10277|PTHR10277:SF9|SM00917|SSF110921|SSF51569|TIGR00973
ALIDE_RS08770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001967|IPR012338|IPR018044	Beta-lactamase/transpeptidase-like|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A|Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal	GO:0006508|GO:0009002	G3DSA:3.40.710.10|PF00768|PR00725|PTHR21581|PTHR21581:SF8|SSF56601
ALIDE_RS08775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|SM00346|SSF46785|SSF55781
ALIDE_RS08780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001734|IPR011851|IPR018212	Sodium/proline symporter|Sodium/solute symporter|Sodium/solute symporter, conserved site	GO:0005215|GO:0005298|GO:0006810|GO:0006814|GO:0015824|GO:0016020|GO:0016021|GO:0031402|GO:0055085	PF00474|PS00457|PTHR11819|PTHR11819:SF148|TIGR00813|TIGR02121
ALIDE_RS08785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002872|IPR005933|IPR010985|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR024082|IPR024089|IPR024090|IPR025703|IPR029041	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase|Bifunctional protein PutA|Delta-1-pyrroline-5-carboxylate dehydrogenase 3|FAD-linked oxidoreductase-like|Proline dehydrogenase PutA, domain I|Proline dehydrogenase PutA, domain I/II|Proline dehydrogenase PutA, domain II|Proline dehydrogenase domain|Ribbon-helix-helix	GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0006561|GO:0008152|GO:0010133|GO:0016491|GO:0016620|GO:0055114	G3DSA:1.10.2060.10|G3DSA:1.20.5.550|G3DSA:3.20.20.220|G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PF01619|PF14850|PIRSF000197|PS00070|PTHR11699|PTHR11699:SF18|SSF47598|SSF51730|SSF53720|SSF81935|TIGR01238
ALIDE_RS08790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF221|SSF47203|SSF56645
ALIDE_RS08795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002575|IPR011009	Aminoglycoside phosphotransferase|Protein kinase-like domain		G3DSA:3.90.1200.10|PF01636|PTHR12725|PTHR12725:SF80|SSF56112
ALIDE_RS08800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000595|IPR011991|IPR012318|IPR014710|IPR018490	Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|PTHR24567|PTHR24567:SF30|SM00100|SM00419|SSF46785|SSF51206
ALIDE_RS08805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR018376|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|SSF52096
ALIDE_RS08810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006108|IPR006176|IPR008927|IPR013328|IPR016040	3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0003857|GO:0006631|GO:0016491|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF00725|PF02737|PTHR23309|PTHR23309:SF12|SSF48179|SSF51735
ALIDE_RS08820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003733|IPR013785|IPR022998	Aldolase-type TIM barrel|Thiamin phosphate synthase superfamily|Thiamine phosphate synthase	GO:0003824|GO:0004789|GO:0009228	G3DSA:3.20.20.70|PF02581|PTHR20857|SSF51391
ALIDE_RS08825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008867|IPR013785	Aldolase-type TIM barrel|Thiazole biosynthesis	GO:0003824|GO:0009228	G3DSA:3.20.20.70|MF_00443|PF05690|PTHR34266|SSF110399
ALIDE_RS08830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003749|IPR010035|IPR012675|IPR016155	Beta-grasp domain|Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|ThiS, thiamine-biosynthesis|ThiamineS/Molybdopterin converting factor subunit 1		G3DSA:3.10.20.30|PF02597|PTHR34472|PTHR34472:SF1|SSF54285|TIGR01683
ALIDE_RS08835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR012727|IPR023753	FAD dependent oxidoreductase|FAD/NAD(P)-binding domain|Glycine oxidase ThiO	GO:0016491|GO:0050660|GO:0055114	G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|SSF51905|SSF54373|TIGR02352
ALIDE_RS08840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004399|IPR013749|IPR029056	Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase|Pyridoxamine kinase/Phosphomethylpyrimidine kinase|Ribokinase-like	GO:0008972|GO:0009228	G3DSA:3.40.1190.20|PF08543|PTHR20858|PTHR20858:SF17|SSF53613|TIGR00097
ALIDE_RS08845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003646|IPR010466	Protein of unknown function DUF1058|SH3-like domain, bacterial-type		PF06347|PF08239|SM00287
ALIDE_RS08850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001248|IPR030191	Cytosine permease|Purine-cytosine permease	GO:0005215|GO:0015209|GO:0016020|GO:0016021|GO:0055085	PF02133|PTHR30569
ALIDE_RS08855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022890|IPR023753	FAD/NAD(P)-binding domain|Ferredoxin--NADP reductase, type 2	GO:0004324|GO:0016491|GO:0055114	G3DSA:3.50.50.60|MF_01685|PF07992|PR00368|PR00411|PTHR22912|PTHR22912:SF158|SSF51905
ALIDE_RS08860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000813|IPR017896|IPR017900|IPR022569	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|7Fe ferredoxin|Ferredoxin, C-terminal	GO:0009055	G3DSA:1.10.1060.10|G3DSA:3.30.70.20|PF00037|PF11953|PR00354|PS00198|PTHR11938|PTHR11938:SF101|SSF54862
ALIDE_RS08865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000795|IPR009000|IPR009001|IPR011779|IPR027417|IPR031157	P-loop containing nucleoside triphosphate hydrolase|Sulphate adenylyltransferase, large subunit|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal|Translation protein, beta-barrel domain	GO:0003924|GO:0005525|GO:0006790	G3DSA:2.40.30.10|G3DSA:3.40.50.300|PF00009|PR00315|PS00301|PTHR23115|PTHR23115:SF91|SSF50447|SSF50465|SSF52540|TIGR02034
ALIDE_RS08870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002500|IPR011784|IPR014729	Phosphoadenosine phosphosulphate reductase|Rossmann-like alpha/beta/alpha sandwich fold|Sulphate adenylyltransferase, small subunit	GO:0003824|GO:0004781|GO:0008152|GO:0019419	G3DSA:3.40.50.620|PF01507|PIRSF002936|PTHR23293|PTHR23293:SF6|SSF52402
ALIDE_RS08875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002500|IPR014729	Phosphoadenosine phosphosulphate reductase|Rossmann-like alpha/beta/alpha sandwich fold	GO:0003824|GO:0008152	G3DSA:3.40.50.620|PF01507|PTHR23293|PTHR23293:SF5|SSF52402
ALIDE_RS08880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008318	Uncharacterised conserved protein UCP030820		PF06073|PIRSF030820
ALIDE_RS08885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005117|IPR006067	Nitrite/Sulfite reductase ferredoxin-like domain|Nitrite/sulphite reductase 4Fe-4S domain	GO:0016491|GO:0020037|GO:0051536|GO:0055114	G3DSA:3.30.413.10|G3DSA:3.90.480.10|PF01077|PF03460|PTHR11493|PTHR11493:SF47|SSF55124|SSF56014
ALIDE_RS08890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002781	Transmembrane protein TauE-like	GO:0016021	PF01925|PTHR30269|PTHR30269:SF2
ALIDE_RS08895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR008471|IPR017610|IPR023032|IPR023753|IPR029063	FAD dependent oxidoreductase|FAD/NAD(P)-binding domain|MnmC-like methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase|tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC|tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal	GO:0004808|GO:0008033|GO:0008168|GO:0016491|GO:0016645|GO:0055114	G3DSA:3.40.50.150|G3DSA:3.50.50.60|MF_01102|PF01266|PF05430|PTHR13847|PTHR13847:SF182|SSF51971|SSF53335|TIGR03197
ALIDE_RS08900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005115	Uncharacterised domain UPF0126		PF03458|PTHR30506|PTHR30506:SF2
ALIDE_RS08905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007457	Fe(II) trafficking protein YggX	GO:0005506	G3DSA:1.10.3880.10|MF_00686|PD029191|PF04362|PIRSF029827|PTHR36965|PTHR36965:SF1|SSF111148
ALIDE_RS08910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000957|IPR005669	Sulphate/thiosulphate-binding, conserved site|Thiosulphate/Sulfate-binding protein	GO:0008271|GO:0008272|GO:0015419|GO:0030288	G3DSA:3.40.190.10|PF13531|PS00757|PTHR30368|PTHR30368:SF2|SSF53850|TIGR00971
ALIDE_RS08915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029039	Flavoprotein-like domain		G3DSA:3.40.50.360|SSF52218
ALIDE_RS08920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009057|IPR011075|IPR015893	Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal	GO:0003677	G3DSA:1.10.10.60|G3DSA:1.10.357.10|SSF46689|SSF48498
ALIDE_RS08925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS08930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020613|IPR020615|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00737|PTHR18919|PTHR18919:SF83|SSF53901
ALIDE_RS08935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24321|PTHR24321:SF6|SSF51735
ALIDE_RS08940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|SSF53822
ALIDE_RS08945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF379
ALIDE_RS08950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482|PTHR30482:SF2
ALIDE_RS08955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PTHR24220|PTHR24220:SF358|SM00382|SSF52540
ALIDE_RS08960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS08965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003779|IPR029032	AhpD-like|Carboxymuconolactone decarboxylase-like	GO:0051920|GO:0055114	G3DSA:1.20.1290.10|PF02627|SSF69118
ALIDE_RS08970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS08975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24322|PTHR24322:SF328|SM00822|SSF51735
ALIDE_RS08990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:3.40.190.10|PF13379|PTHR30024|PTHR30024:SF3|SSF53850
ALIDE_RS08995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000189|IPR006597|IPR008258|IPR011990|IPR023346	Lysozyme-like domain|Prokaryotic transglycosylase, active site|Sel1-like repeat|Tetratricopeptide-like helical domain|Transglycosylase SLT domain 1	GO:0000270|GO:0005515|GO:0008933|GO:0016020	G3DSA:1.10.530.10|G3DSA:1.25.40.10|PF01464|PF08238|PS00922|PTHR21666|SM00671|SSF53955|SSF81901
ALIDE_RS09005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS09010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS09030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004099|IPR006121|IPR012999|IPR016156|IPR017969|IPR021179|IPR023753	FAD/NAD(P)-binding domain|FAD/NAD-linked reductase, dimerisation domain|Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site|Mercury(II) reductase|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	GO:0016152|GO:0016491|GO:0016668|GO:0030001|GO:0045340|GO:0045454|GO:0046872|GO:0050660|GO:0050661|GO:0050787|GO:0055114	G3DSA:3.30.390.30|G3DSA:3.30.70.100|G3DSA:3.50.50.60|PF00403|PF02852|PF07992|PIRSF000350|PR00945|PS00076|PS01047|PTHR22912|PTHR22912:SF29|SSF51905|SSF55008|SSF55424|TIGR02053
ALIDE_RS09035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001802|IPR006121|IPR011795|IPR017969	Heavy metal-associated domain, HMA|Heavy-metal-associated, conserved site|Mercuric transport protein periplasmic component|Mercuric transport protein periplasmic component/copper chaperone CopZ	GO:0015097|GO:0015694|GO:0030001|GO:0042597|GO:0045340|GO:0046689|GO:0046872	G3DSA:3.30.70.100|PF00403|PR00946|PS01047|SSF55008|TIGR02052
ALIDE_RS09040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003457	Mercuric transport protein MerT	GO:0015097|GO:0015694|GO:0016020	PF02411
ALIDE_RS09045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000551|IPR009061|IPR011794|IPR015358	Hg(II)-responsive transcriptional regulator|MerR-type HTH domain|Putative DNA-binding domain|Transcription regulator MerR, DNA binding	GO:0003677|GO:0006355|GO:0045340|GO:0046689	G3DSA:1.10.1660.10|PF00376|PF09278|PR00040|PS00552|PTHR30204|PTHR30204:SF18|SM00422|SSF46955|TIGR02051
ALIDE_RS09050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021960	Protein of unknown function DUF3577		PF12101
ALIDE_RS09055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021693	Protein of unknown function DUF3275		PF11679
ALIDE_RS09070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002052|IPR029063	DNA methylase, N-6 adenine-specific, conserved site|S-adenosyl-L-methionine-dependent methyltransferase	GO:0003676|GO:0008168|GO:0032259	G3DSA:3.40.50.150|PR00507|PS00092|SSF53335
ALIDE_RS09080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027417	P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|SSF52540
ALIDE_RS09085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS09090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS09095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005119	LysR, substrate-binding		G3DSA:3.40.190.10|PF03466|SSF53850
ALIDE_RS09100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762|IPR023109|IPR025166	DNA breaking-rejoining enzyme, catalytic core|Domain of unknown function DUF4102|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF13356|PTHR30629|PTHR30629:SF4|SSF56349
ALIDE_RS09110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000944|IPR011991|IPR030489	Transcription regulator Rrf2-type|Transcription regulator Rrf2-type, conserved site|Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|PF02082|PS01332|PTHR33221|PTHR33221:SF1|SSF46785|TIGR00738
ALIDE_RS09125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003817|IPR033177|IPR033178	Phosphatidylserine decarboxylase|Phosphatidylserine decarboxylase, prokaryotic type 1|Phosphatidylserine decarboxylase-related	GO:0004609|GO:0008654	MF_00662|PF02666|PTHR10067|TIGR00163
ALIDE_RS09130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644|IPR007065	CBS domain|HPP		G3DSA:3.10.580.10|PF00571|PF04982|PTHR11911|PTHR11911:SF90|SM00116|SSF54631
ALIDE_RS09135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004368|IPR006196|IPR012340	Nucleic acid-binding, OB-fold|RNA-binding domain, S1, IF1 type|Translation initiation factor IF-1	GO:0003723|GO:0003743|GO:0006413	G3DSA:2.40.50.140|MF_00075|PF01176|PTHR33370|SSF50249|TIGR00008
ALIDE_RS09145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR029787	GGDEF domain|Nucleotide cyclase		G3DSA:3.30.70.270|PF00990|PTHR10799|PTHR10799:SF710|SM00267|SSF55073|TIGR00254
ALIDE_RS09150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012429	Protein of unknown function DUF1624		PF07786
ALIDE_RS09155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000119|IPR010992	Histone-like DNA-binding protein|Integration host factor (IHF)-like DNA-binding domain	GO:0003677	G3DSA:4.10.520.10|PF00216|PR01727|PTHR33175|PTHR33175:SF5|SM00411|SSF47729
ALIDE_RS09160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000110|IPR003029|IPR012340|IPR022967	Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribosomal protein S1|S1 domain	GO:0003676|GO:0003723|GO:0003735|GO:0005840|GO:0006412	G3DSA:2.40.50.140|PF00575|PIRSF002111|PR00681|PTHR10724|PTHR10724:SF6|SM00316|SSF50249|TIGR00717
ALIDE_RS09165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001986|IPR003136|IPR006264|IPR011994|IPR013792|IPR023193|IPR027417	3-phosphoshikimate 1-carboxyvinyltransferase|3-phosphoshikimate 1-carboxyvinyltransferase, conserved site|Cytidylate kinase|Cytidylate kinase domain|Enolpyruvate transferase domain|P-loop containing nucleoside triphosphate hydrolase|RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	GO:0003824|GO:0003866|GO:0004127|GO:0005524|GO:0006139|GO:0016765	G3DSA:3.40.50.300|G3DSA:3.65.10.10|MF_00210|MF_00238|PF00275|PF02224|PS00104|PS00885|PTHR21090|PTHR21090:SF21|SSF52540|SSF55205|TIGR00017|TIGR01356
ALIDE_RS09170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003099|IPR008927|IPR016040	6-phosphogluconate dehydrogenase C-terminal domain-like|NAD(P)-binding domain|Prephenate dehydrogenase	GO:0004665|GO:0006571|GO:0008977|GO:0055114	G3DSA:3.40.50.720|PF02153|PTHR21363|PTHR21363:SF0|SSF48179|SSF51735
ALIDE_RS09175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001086|IPR002701|IPR002912|IPR008242|IPR010957|IPR018528|IPR020822	ACT domain|Bifunctional P-protein, chorismate mutase/prephenate dehydratase|Chorismate mutase|Chorismate mutase, type II|Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain|Prephenate dehydratase|Prephenate dehydratase, conserved site	GO:0004106|GO:0004664|GO:0005737|GO:0008152|GO:0009094|GO:0016597|GO:0046417	G3DSA:1.20.59.10|G3DSA:3.30.70.260|G3DSA:3.40.190.10|PF00800|PF01817|PF01842|PIRSF001500|PS00858|PTHR21022|PTHR21022:SF0|SM00830|SSF48600|SSF53850|SSF55021|TIGR01807
ALIDE_RS09180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000192|IPR015421|IPR015422|IPR015424|IPR020578|IPR022278	Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Phosphoserine aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0004648|GO:0006564	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00160|PF00266|PIRSF000525|PS00595|PTHR21152|PTHR21152:SF1|SSF53383|TIGR01364
ALIDE_RS09185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002205|IPR005743|IPR006691|IPR013757|IPR013758|IPR013760|IPR024946	Arginine repressor C-terminal-like domain|DNA gyrase, subunit A|DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel|DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta|DNA topoisomerase, type IIA, subunit A/C-terminal|DNA topoisomerase, type IIA-like domain|Type IIA DNA topoisomerase subunit A, alpha-helical domain	GO:0003677|GO:0003916|GO:0003918|GO:0005524|GO:0005694|GO:0006259|GO:0006265	G3DSA:1.10.268.10|G3DSA:2.120.10.90|G3DSA:3.30.1360.40|G3DSA:3.90.199.10|MF_01897|PF00521|PF03989|PTHR10169|PTHR10169:SF48|SM00434|SSF101904|SSF56719|TIGR01063
ALIDE_RS09190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006664|IPR006665	OmpA-like domain|Outer membrane protein, bacterial	GO:0009279|GO:0016021	G3DSA:3.30.1330.60|PF00691|PR01021|PTHR30128|SSF103088
ALIDE_RS09195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010233|IPR029063	S-adenosyl-L-methionine-dependent methyltransferase|Ubiquinone biosynthesis O-methyltransferase	GO:0006744|GO:0008425	G3DSA:3.40.50.150|MF_00472|PF13489|PTHR10108|PTHR10108:SF910|SSF53335|TIGR01983
ALIDE_RS09200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006346|IPR006439|IPR023198|IPR023214	2-phosphoglycolate phosphatase, prokaryotic|HAD hydrolase, subfamily IA|HAD-like domain|Phosphoglycolate phosphatase, domain 2	GO:0008152|GO:0008967|GO:0016787|GO:0046295	G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|PTHR18901|PTHR18901:SF24|SSF56784|TIGR01449|TIGR01509|TIGR01549
ALIDE_RS09205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003738	SOS response associated peptidase (SRAP)		G3DSA:3.90.1680.10|PF02586|PTHR13604|SSF143081
ALIDE_RS09210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015927|IPR019759|IPR028360	Peptidase S24/S26, beta-ribbon domain|Peptidase S24/S26A/S26B|Peptidase S24/S26A/S26B/S26C		G3DSA:2.10.109.10|PF00717|PTHR33516|PTHR33516:SF1|SSF51306
ALIDE_RS09215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001126|IPR017961|IPR025188	DNA polymerase, Y-family, little finger domain|Domain of unknown function DUF4113|UmuC domain	GO:0003684|GO:0006281	G3DSA:1.10.150.20|G3DSA:3.30.70.270|PF00817|PF11799|PF13438|PTHR11076|PTHR11076:SF40|SSF56672
ALIDE_RS09220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				SSF109709
ALIDE_RS09225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				SSF109709
ALIDE_RS09230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006119|IPR011109	DNA-binding recombinase domain|Resolvase, N-terminal catalytic domain	GO:0000150|GO:0003677|GO:0006310	G3DSA:3.40.50.1390|PF00239|PF07508|PTHR30461|PTHR30461:SF3|SM00857|SSF53041
ALIDE_RS09235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021322	Protein of unknown function DUF2924		PF11149
ALIDE_RS09245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001387|IPR010982	Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain	GO:0003677|GO:0043565	G3DSA:1.10.260.40|PF12844|SM00530|SSF47413
ALIDE_RS09255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003692	Hydantoinase B/oxoprolinase	GO:0003824	PF02538|PTHR11365
ALIDE_RS09260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002821	Hydantoinase/oxoprolinase	GO:0016787	PF01968|PTHR11365
ALIDE_RS09265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057|IPR010921	Homeodomain-like|Transposase IS3/IS911family|Trp repressor/replication initiator	GO:0003677|GO:0004803|GO:0006313|GO:0043565	G3DSA:1.10.10.60|PF01527|SSF48295
ALIDE_RS09270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008878	Transposase IS66, Orf2		PF05717|PTHR36455
ALIDE_RS09275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004291|IPR024463|IPR024474	Transposase TnpC, homeodomain|Transposase, IS66|Zinc-finger binding domain of transposase IS66		PF03050|PF13005|PF13007|PF13817|PTHR33678|PTHR33678:SF1
ALIDE_RS09280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002821|IPR008040	Hydantoinase/oxoprolinase|Hydantoinaseoxoprolinase, N-terminal	GO:0016787	PF01968|PF05378|PTHR11365
ALIDE_RS09285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS09290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS09295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR023753	FAD dependent oxidoreductase|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|PTHR13847|SSF51905|SSF54373
ALIDE_RS09300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30427|PTHR30427:SF1|SSF46785|SSF53850
ALIDE_RS09305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012338|IPR015868	Beta-lactamase/transpeptidase-like|Glutaminase	GO:0004359|GO:0006541	G3DSA:3.40.710.10|MF_00313|PF04960|PTHR12544|SSF56601|TIGR03814
ALIDE_RS09310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002933|IPR011650|IPR017439	Amidohydrolase|Peptidase M20|Peptidase M20, dimerisation domain	GO:0008152|GO:0016787	G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|PTHR11014|PTHR11014:SF63|SSF53187|SSF55031|TIGR01891
ALIDE_RS09315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005828|IPR005829|IPR020846	Major facilitator superfamily domain|Major facilitator,  sugar transporter-like|Sugar transporter, conserved site	GO:0005215|GO:0016021|GO:0022857|GO:0055085	G3DSA:1.20.1250.20|PF00083|PS00216|PS00217|PTHR23508|PTHR23508:SF13|SSF103473
ALIDE_RS09320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|SSF46785|SSF53850
ALIDE_RS09335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010985|IPR014795	Ribbon-helix-helix|Vibrio phage ICP1, Orf50	GO:0006355	G3DSA:1.20.5.780|PF08681|PTHR35401|PTHR35401:SF1|SSF47598
ALIDE_RS09340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR11360|PTHR11360:SF115|SSF103473
ALIDE_RS09345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PTHR24322|SSF51735
ALIDE_RS09350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003736|IPR006683|IPR029069	HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR12418|SSF54637|TIGR00369
ALIDE_RS09355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR011032|IPR013149|IPR016040|IPR020843	Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF16884|PTHR11695|PTHR11695:SF557|SM00829|SSF50129|SSF51735
ALIDE_RS09360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR010987|IPR012336	Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold	GO:0005515	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13410|PF13417|PTHR11260|PTHR11260:SF192|SSF47616|SSF52833
ALIDE_RS09365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011460	Protein of unknown function DUF1566		PF07603
ALIDE_RS09370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23501|PTHR23501:SF5|SSF103473
ALIDE_RS09375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002081|IPR005101|IPR006050|IPR014729|IPR018394	Cryptochrome/DNA photolyase class 1|Cryptochrome/DNA photolyase class 1, conserved site, C-terminal|Cryptochrome/DNA photolyase, FAD-binding domain|DNA photolyase, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold		G3DSA:1.10.579.10|G3DSA:1.25.40.80|G3DSA:3.40.50.620|PF00875|PF03441|PR00147|PS00394|PS00691|PTHR11455|PTHR11455:SF18|SSF48173|SSF52425
ALIDE_RS09380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008457	Copper resistance protein D	GO:0016021	PF05425
ALIDE_RS09385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002629|IPR006276|IPR013215	Cobalamin-independent methionine synthase|Cobalamin-independent methionine synthase MetE, C-terminal/archaeal|Cobalamin-independent methionine synthase MetE, N-terminal	GO:0003871|GO:0008270|GO:0008652|GO:0009086	G3DSA:3.20.20.210|MF_00172|PF01717|PF08267|PIRSF000382|PTHR30519|PTHR30519:SF0|SSF51726|TIGR01371
ALIDE_RS09390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|PTHR30126:SF25|SSF46785|SSF53850
ALIDE_RS09400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021762	Protein of unknown function DUF3325		PF11804
ALIDE_RS09405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021557	Protein of unknown function DUF3016		PF11454
ALIDE_RS09410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015813	Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824	G3DSA:3.20.20.60|PF13714|PTHR21631|PTHR21631:SF4|SSF51621
ALIDE_RS09415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007400|IPR012709	2-methyl-aconitate isomerase PrpF|PrpF protein	GO:0016853|GO:0019629	G3DSA:3.10.310.10|PF04303|PTHR30349|PTHR30349:SF21|SSF54506|TIGR02334
ALIDE_RS09420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000573|IPR001030|IPR012708|IPR015928|IPR015931|IPR015932|IPR015937	2-methylisocitrate dehydratase AcnD, Fe/S-dependent|Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/isopropylmalate dehydratase	GO:0008152|GO:0019679	G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PF00694|PR00415|PTHR11670|PTHR11670:SF43|SSF52016|SSF53732|TIGR02333
ALIDE_RS09425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002020|IPR011278|IPR016142|IPR016143|IPR019810|IPR024176	2-methylcitrate synthase/citrate synthase type I|Citrate synthase|Citrate synthase active site|Citrate synthase, bacterial-type|Citrate synthase-like, large alpha subdomain|Citrate synthase-like, small alpha subdomain	GO:0005737|GO:0006099|GO:0046912	G3DSA:1.10.230.10|G3DSA:1.10.580.10|PF00285|PIRSF001369|PR00143|PS00480|PTHR11739|PTHR11739:SF4|SSF48256|TIGR01800
ALIDE_RS09430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006683|IPR029069	HotDog domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR11049|PTHR11049:SF5|SSF54637
ALIDE_RS09435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001387|IPR010359|IPR010982|IPR018653|IPR026281	Cro/C1-type helix-turn-helix domain|Domain of unknown function DUF2083,transcriptional regulator|HTH domain, IrrE-type|HTH-type transcriptional regulator RamB|Lambda repressor-like, DNA-binding domain	GO:0003677|GO:0006355|GO:0043565	G3DSA:1.10.260.40|PF01381|PF06114|PF09856|PIRSF019251|PTHR10245|PTHR10245:SF49|SM00530|SSF47413
ALIDE_RS09440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS09445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004360|IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain		G3DSA:3.10.180.10|PF00903|PTHR21366|PTHR21366:SF15|SSF54593
ALIDE_RS09450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029058	Alpha/Beta hydrolase fold		G3DSA:3.40.50.1820|PTHR11177|PTHR11177:SF162|SSF53474
ALIDE_RS09455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002942|IPR025708	Heat shock protein 15|RNA-binding S4 domain	GO:0003677|GO:0003723|GO:0003727|GO:0034605|GO:0043023	G3DSA:3.10.290.10|PF01479|PIRSF016821|PTHR11079|PTHR11079:SF70|SM00363|SSF55174
ALIDE_RS09460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003660|IPR003661|IPR004358|IPR013727	HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal	GO:0000155|GO:0004871|GO:0007165|GO:0016021|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PF08521|PR00344|PTHR24423|PTHR24423:SF474|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS09465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991|IPR016032	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF518|SM00448|SM00862|SSF46894|SSF52172
ALIDE_RS09470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF25|SSF53850
ALIDE_RS09475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009936	Protein of unknown function DUF1468		PF07331
ALIDE_RS09480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002823	Protein of unknown function DUF112, transmembrane		PF01970|PTHR35342|PTHR35342:SF3
ALIDE_RS09485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016582|IPR029058	Alpha/Beta hydrolase fold|D-(-)-3-hydroxybutyrate oligomer hydrolase, putative	GO:0005615|GO:0019605|GO:0047989	G3DSA:3.40.50.1820|PF10605|PIRSF011409
ALIDE_RS09490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007461	Ysc84 actin-binding domain		PF04366
ALIDE_RS09495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007272	Sulphur transport domain		PF04143|PTHR30574|PTHR30574:SF5
ALIDE_RS09500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001763	Rhodanese-like domain		G3DSA:3.40.250.10|PF00581|PTHR11364|SM00450|SSF52821
ALIDE_RS09505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001015|IPR019772	Ferrochelatase|Ferrochelatase, active site	GO:0004325|GO:0006783	G3DSA:3.40.50.1400|MF_00323|PF00762|PS00534|PTHR11108|SSF53800|TIGR00109
ALIDE_RS09510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006439|IPR023214	HAD hydrolase, subfamily IA|HAD-like domain	GO:0008152|GO:0016787	G3DSA:3.40.50.1000|PF13419|PR00413|PTHR12725|PTHR12725:SF65|SSF56784|TIGR01549
ALIDE_RS09515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR004014|IPR006068|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299	Cation-transporting P-type ATPase, C-terminal|Cation-transporting P-type ATPase, N-terminal|HAD-like domain|P-type ATPase|P-type ATPase,  transmembrane domain|P-type ATPase, A  domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site	GO:0000166|GO:0016021|GO:0046872	G3DSA:1.20.1110.10|G3DSA:2.70.150.10|G3DSA:3.40.1110.10|PF00122|PF00689|PF00690|PF00702|PR00119|PR00121|PS00154|PTHR24093|SM00831|SSF56784|SSF81653|SSF81660|SSF81665|TIGR01494
ALIDE_RS09520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1		G3DSA:3.40.50.1820|PF12697|PTHR10992|SSF53474
ALIDE_RS09525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000277|IPR006235|IPR015421|IPR015422|IPR015424	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|O-acetylhomoserine/O-acetylserine sulfhydrylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0006520|GO:0016765|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|PTHR11808|PTHR11808:SF12|SSF53383|TIGR01326
ALIDE_RS09530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644	CBS domain		G3DSA:3.10.580.10|PF00571|PTHR11911|SM00116|SSF54631
ALIDE_RS09535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000453|IPR020541	Chorismate synthase|Chorismate synthase, conserved site	GO:0004107|GO:0009073	G3DSA:3.60.150.10|MF_00300|PF01264|PIRSF001456|PS00787|PS00788|PS00789|PTHR21085|SSF103263|TIGR00033
ALIDE_RS09540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003796|IPR005144	ATP-cone domain|Ribonucleotide reductase regulator NrdR-like	GO:0008270|GO:0045892	MF_00440|PF03477|PTHR30455|PTHR30455:SF2|TIGR00244
ALIDE_RS09545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001085|IPR015421|IPR015422|IPR015424|IPR019798	Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2|Serine hydroxymethyltransferase|Serine hydroxymethyltransferase, pyridoxal phosphate binding site	GO:0003824|GO:0004372|GO:0006544|GO:0006563|GO:0016740|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00051|PF00464|PIRSF000412|PS00096|PTHR11680|PTHR11680:SF9|SSF53383
ALIDE_RS09550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008258|IPR023346	Lysozyme-like domain|Transglycosylase SLT domain 1		G3DSA:1.10.530.10|PF01464|PTHR21666|SSF53955
ALIDE_RS09555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006665|IPR008023	OmpA-like domain|Protein of unknown function DUF748		G3DSA:3.30.1330.60|PF00691|PF05359|SSF103088
ALIDE_RS09560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007139	Protein of unknown function DUF349		PF03993
ALIDE_RS09575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003029|IPR004476|IPR011129|IPR011805|IPR012340|IPR013223|IPR022966|IPR022967	Cold shock protein|Nucleic acid-binding, OB-fold|RNA-binding domain, S1|Ribonuclease B, N-terminal OB domain|Ribonuclease II/R, conserved site|Ribonuclease II/ribonuclease R|Ribonuclease R|S1 domain	GO:0003676|GO:0003723|GO:0004518|GO:0004540|GO:0016070	G3DSA:2.40.50.140|MF_01895|PF00575|PF00773|PF08206|PS01175|PTHR23355|PTHR23355:SF9|SM00316|SM00357|SM00955|SSF50249|TIGR00358|TIGR02063
ALIDE_RS09580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|PTHR24322|SSF51735
ALIDE_RS09585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009056|IPR024167	Cytochrome c-like domain|Cytochrome c4	GO:0005506|GO:0009055|GO:0020037|GO:0042597	G3DSA:1.10.760.10|PF00034|PIRSF000005|PTHR33751|PTHR33751:SF2|SSF46626
ALIDE_RS09590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009056|IPR014353	Cytochrome c-like domain|Membrane-bound alcohol dehydrogenase, cytochrome c subunit	GO:0005506|GO:0009055|GO:0016020|GO:0016614|GO:0020037	G3DSA:1.10.3820.10|G3DSA:1.10.760.10|PF00034|PF13442|PIRSF000018|PTHR35008|PTHR35008:SF5|SSF46626
ALIDE_RS09595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012336|IPR013766	Thioredoxin domain|Thioredoxin-like fold	GO:0045454	G3DSA:3.40.30.10|PF00085|SSF52833
ALIDE_RS09600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003728|IPR028989	Ribosome maturation factor RimP|Ribosome maturation factor RimP, N-terminal	GO:0042274	G3DSA:3.30.300.70|MF_01077|PF02576|PTHR33867|PTHR33867:SF1|SSF75420
ALIDE_RS09605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003029|IPR004087|IPR009019|IPR010213|IPR010214|IPR010995|IPR012340|IPR013735|IPR015946|IPR022967|IPR025249|IPR030842	DNA repair Rad51/transcription factor NusA, alpha-helical|K Homology domain|K homology domain, prokaryotic type|K homology domain-like, alpha/beta|KH domain, NusA-like|Nucleic acid-binding, OB-fold|RNA-binding domain, S1|S1 domain|Transcription factor NusA, N-terminal|Transcription termination factor NusA|Transcription termination factor NusA, C-terminal duplication|Transcription termination/antitermination protein NusA, bacterial	GO:0000166|GO:0003676|GO:0003700|GO:0003723|GO:0006353|GO:0031554|GO:0031564	G3DSA:1.10.150.20|G3DSA:2.40.50.140|G3DSA:3.30.1480.10|G3DSA:3.30.300.20|MF_00945_B|PF00575|PF08529|PF13184|PF14520|PTHR22648|PTHR22648:SF0|SM00316|SM00322|SSF47794|SSF50249|SSF54814|SSF69705|TIGR01953|TIGR01954
ALIDE_RS09610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000178|IPR005225|IPR006847|IPR009000|IPR009061|IPR013575|IPR023115|IPR027417	Initiation factor 2 associated domain, bacterial|P-loop containing nucleoside triphosphate hydrolase|Putative DNA-binding domain|Small GTP-binding protein domain|Translation initiation factor IF- 2, domain 3|Translation initiation factor IF-2, N-terminal|Translation initiation factor aIF-2, bacterial-like|Translation protein, beta-barrel domain	GO:0003743|GO:0005525|GO:0005622|GO:0006413	G3DSA:2.40.30.10|G3DSA:3.30.56.50|G3DSA:3.40.50.10050|G3DSA:3.40.50.300|MF_00100_B|PF00009|PF04760|PF08364|PF11987|PTHR23115|PTHR23115:SF184|SSF46955|SSF50447|SSF52156|SSF52540|TIGR00231|TIGR00487
ALIDE_RS09615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000238|IPR015946|IPR023799	K homology domain-like, alpha/beta|Ribosome-binding factor A|Ribosome-binding factor A domain	GO:0006364	G3DSA:3.30.300.20|MF_00003|PD007327|PF02033|PTHR33515|SSF89919|TIGR00082
ALIDE_RS09620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002501|IPR014780|IPR015240|IPR015947|IPR020103|IPR032819	PUA-like domain|Pseudouridine synthase II, N-terminal|Pseudouridine synthase, catalytic domain|tRNA pseudouridine synthase II, TruB|tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal|tRNA pseudouridylate synthase B, C-terminal	GO:0001522|GO:0003723|GO:0006396|GO:0009451|GO:0009982	G3DSA:2.30.130.10|MF_01080|PF01509|PF09157|PF16198|PTHR13767|PTHR13767:SF2|SSF55120|TIGR00431
ALIDE_RS09625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000640|IPR000795|IPR004161|IPR005225|IPR006298|IPR009000|IPR009022|IPR027417|IPR031157	Elongation factor G, III-V domain|GTP-binding protein TypA|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFG, V domain|Translation elongation factor EFTu/EF1A, domain 2|Translation protein, beta-barrel domain	GO:0003924|GO:0005525	G3DSA:2.40.30.10|G3DSA:2.40.50.250|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|PF00009|PF00679|PF03144|PR00315|PS00301|PTHR23115|PTHR23115:SF14|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR01394
ALIDE_RS09630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007213|IPR029063	Methyltransferase Ppm1/Ppm2/Tcmp|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008168|GO:0032259	G3DSA:3.40.50.150|PF04072|PTHR13600|PTHR13600:SF19|SSF53335
ALIDE_RS09635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029045|IPR032259	ClpP/crotonase-like domain|Enoyl-CoA hydratase/isomerase,  HIBYL-CoA-H type	GO:0003860	G3DSA:3.90.226.10|PF16113|PTHR11941|PTHR11941:SF53|SSF52096
ALIDE_RS09645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007627|IPR011991|IPR013249|IPR013324|IPR013325|IPR014284	RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987	G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|PTHR30173|PTHR30173:SF6|SSF88659|SSF88946|TIGR02937
ALIDE_RS09650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005297|IPR014558	Lipoprotein repeat|Uncharacterised conserved lipoprotein		PF03640|PIRSF029720|PTHR39335
ALIDE_RS09655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000037|IPR020081|IPR023620	Small protein B|SsrA-binding protein|SsrA-binding protein, conserved site	GO:0003723	G3DSA:2.40.280.10|MF_00023|PD004488|PF01668|PS01317|PTHR30308|PTHR30308:SF2|SSF74982|TIGR00086
ALIDE_RS09660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005031|IPR023393	Coenzyme Q-binding protein COQ10, START domain|START-like domain		G3DSA:3.30.530.20|PF03364|PTHR12901|PTHR12901:SF7|SSF55961
ALIDE_RS09665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005346|IPR016155	Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|RnfH protein		G3DSA:3.10.20.280|MF_00460|PF03658|PTHR37483|PTHR37483:SF1|SSF54285
ALIDE_RS09670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025392	Domain of unknown function DUF4124		PF13511
ALIDE_RS09675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644|IPR001093|IPR005990|IPR013785|IPR015875	Aldolase-type TIM barrel|CBS domain|IMP dehydrogenase / GMP reductase, conserved site|IMP dehydrogenase/GMP reductase|Inosine-5'-monophosphate dehydrogenase	GO:0003824|GO:0003938|GO:0006164|GO:0016491|GO:0055114	G3DSA:3.20.20.70|MF_01964|PF00478|PF00571|PIRSF000130|PS00487|PTHR11911|PTHR11911:SF6|SM00116|SM01240|SSF51412|SSF54631|TIGR01302
ALIDE_RS09680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001674|IPR004739|IPR014729|IPR017926|IPR022310|IPR022955|IPR029062	Class I glutamine amidotransferase-like|GMP synthase|GMP synthase, C-terminal|GMP synthase, N-terminal|Glutamine amidotransferase|NAD/GMP synthase|Rossmann-like alpha/beta/alpha sandwich fold	GO:0003922|GO:0005524|GO:0006164|GO:0006177	G3DSA:3.30.300.10|G3DSA:3.40.50.620|G3DSA:3.40.50.880|MF_00344|PF00117|PF00958|PF02540|PTHR11922|PTHR11922:SF2|SSF52317|SSF52402|SSF54810|TIGR00884|TIGR00888
ALIDE_RS09685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR004107|IPR011010|IPR013762|IPR023109|IPR025166	DNA breaking-rejoining enzyme, catalytic core|Domain of unknown function DUF4102|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.150.130|G3DSA:1.10.443.10|PF00589|PF13356|PF14659|PTHR30629|PTHR30629:SF2|SSF56349
ALIDE_RS09690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002020|IPR010953|IPR016142|IPR016143|IPR019810|IPR024176	Citrate synthase|Citrate synthase active site|Citrate synthase, bacterial-type|Citrate synthase, type I|Citrate synthase-like, large alpha subdomain|Citrate synthase-like, small alpha subdomain	GO:0004108|GO:0005737|GO:0006099|GO:0046912	G3DSA:1.10.230.10|G3DSA:1.10.580.10|PF00285|PIRSF001369|PR00143|PS00480|PTHR11739|PTHR11739:SF13|SSF48256|TIGR01798
ALIDE_RS09695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005631	Flavinator of succinate dehydrogenase		G3DSA:1.10.150.250|PF03937|SSF109910
ALIDE_RS09700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR004489|IPR009051|IPR012675|IPR017896|IPR017900|IPR025192	2Fe-2S ferredoxin-type iron-sulfur binding domain|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Alpha-helical ferredoxin|Beta-grasp domain|Succinate dehydogenase/fumarate reductase N-terminal|Succinate dehydrogenase/fumarate reductase iron-sulphur protein	GO:0006099|GO:0009055|GO:0016491|GO:0051536|GO:0055114	G3DSA:1.10.1060.10|G3DSA:3.10.20.30|PF13085|PF13237|PS00198|PTHR11921|PTHR11921:SF29|SSF46548|SSF54292|TIGR00384
ALIDE_RS09705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003952|IPR003953|IPR011281|IPR014006|IPR015939|IPR023753|IPR027477|IPR030664	FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal|Fumarate reductase/succinate dehydrogenase, FAD-binding site|Succinate dehydrogenase, flavoprotein subunit|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain|Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit|Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	GO:0006099|GO:0016491|GO:0016627|GO:0022900|GO:0050660|GO:0055114	G3DSA:1.20.58.100|G3DSA:3.50.50.60|G3DSA:3.90.700.10|G3DSA:4.10.80.40|PF00890|PF02910|PIRSF000171|PR00411|PS00504|PTHR11632|PTHR11632:SF5|SSF46977|SSF51905|SSF56425|TIGR01812|TIGR01816
ALIDE_RS09710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000701|IPR014312	Succinate dehydrogenase, hydrophobic membrane anchor|Succinate dehydrogenase/Fumarate reductase, transmembrane subunit	GO:0000104|GO:0006099|GO:0016021|GO:0016627|GO:0020037	G3DSA:1.20.1300.10|PF01127|PIRSF000169|PTHR38689|PTHR38689:SF1|SSF81343|TIGR02968
ALIDE_RS09715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000701|IPR014314	Succinate dehydrogenase, cytochrome b556 subunit|Succinate dehydrogenase/Fumarate reductase, transmembrane subunit	GO:0000104|GO:0006099|GO:0016627|GO:0045281	G3DSA:1.20.1300.10|PF01127|PIRSF000178|PTHR10978|PTHR10978:SF4|SSF81343|TIGR02970
ALIDE_RS09720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR011663|IPR011991|IPR028978	Chorismate pyruvate-lyase/UbiC transcription regulator-associated  domain|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|PTHR11751|PTHR11751:SF292|SM00345|SM00866|SSF46785|SSF64288
ALIDE_RS09725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001236|IPR001557|IPR010945|IPR015955|IPR016040|IPR022383	L-lactate/malate dehydrogenase|Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal|Lactate/malate dehydrogenase, C-terminal|Lactate/malate dehydrogenase, N-terminal|Malate dehydrogenase, type 2|NAD(P)-binding domain	GO:0003824|GO:0005975|GO:0006108|GO:0016491|GO:0016615|GO:0016616|GO:0019752|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.110.10|MF_01517|PF00056|PF02866|PIRSF000102|PTHR23382|SSF51735|SSF56327|TIGR01759
ALIDE_RS09730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023149|IPR023506|IPR029063	S-adenosyl-L-methionine-dependent methyltransferase|Trans-aconitate 2-methyltransferase|Trans-aconitate 2-methyltransferase, C-terminal	GO:0030798	G3DSA:1.10.150.290|G3DSA:3.40.50.150|MF_00560|PF13649|PTHR10108|PTHR10108:SF890|SSF53335
ALIDE_RS09740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001030|IPR004406|IPR015928|IPR015929|IPR015931|IPR015932|IPR015933|IPR015937|IPR018136	Aconitase B|Aconitase B, HEAT-like domain|Aconitase B, N-terminal|Aconitase family, 4Fe-4S cluster binding site|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/isopropylmalate dehydratase	GO:0003994|GO:0005829|GO:0006099|GO:0008152|GO:0051539	G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PF06434|PF11791|PIRSF036687|PS00450|PS01244|PTHR11670|PTHR11670:SF39|SSF52016|SSF53732|SSF74778|TIGR00117
ALIDE_RS09750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|PTHR30346:SF4|SSF46785|SSF53850
ALIDE_RS09755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0055114	G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PS00073|PTHR10909|PTHR10909:SF262|SSF47203|SSF56645
ALIDE_RS09760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS09765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS09770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004099|IPR006322|IPR012999|IPR016156|IPR023753	FAD/NAD(P)-binding domain|FAD/NAD-linked reductase, dimerisation domain|Glutathione reductase, eukaryote/bacterial|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	GO:0004362|GO:0006749|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0050661|GO:0055114	G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|PTHR22912|PTHR22912:SF106|SSF51905|SSF55424|TIGR01421
ALIDE_RS09775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR002888|IPR006058|IPR012675	2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain|[2Fe-2S]-binding	GO:0009055|GO:0016491|GO:0046872|GO:0051536|GO:0051537|GO:0055114	G3DSA:1.10.150.120|G3DSA:3.10.20.30|PF00111|PF01799|PS00197|PTHR11908|SSF47741|SSF54292
ALIDE_RS09780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000674|IPR008274	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead|Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding	GO:0016491|GO:0055114	G3DSA:3.30.365.10|G3DSA:3.90.1170.50|PF01315|PF02738|PTHR11908|PTHR11908:SF85|SM01008|SSF54665|SSF56003
ALIDE_RS09785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002346|IPR005107|IPR016166|IPR016167|IPR016169	CO dehydrogenase flavoprotein, C-terminal|CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD-binding, type 2|FAD-binding, type 2, subdomain 1|Molybdopterin dehydrogenase, FAD-binding	GO:0003824|GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.30.390.50|G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF00941|PTHR11908|PTHR11908:SF68|SM01092|SSF55447|SSF56176
ALIDE_RS09790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR011704|IPR027417	AAA+ ATPase domain|ATPase, dynein-related, AAA domain|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF07728|PTHR22908|PTHR22908:SF67|SM00382|SSF52540
ALIDE_RS09795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002035|IPR008912|IPR011195	Uncharacterised conserved protein UCP010256|Uncharacterised protein family CoxE-like|von Willebrand factor, type A		G3DSA:3.40.50.410|PF05762|PIRSF010256|PTHR39338|PTHR39338:SF1|SSF53300
ALIDE_RS09800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010419|IPR023393	Carbon monoxide dehydrogenase subunit G|START-like domain		G3DSA:3.30.530.20|PF06240|PTHR38588|PTHR38588:SF1|SSF55961
ALIDE_RS09805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003777|IPR016040|IPR027051	NAD(P)-binding domain|XdhC Rossmann domain|XdhC- CoxI		G3DSA:3.40.50.720|PF02625|PF13478|PTHR30388|PTHR30388:SF4
ALIDE_RS09810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025877|IPR029044	MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases		G3DSA:3.90.550.10|PF12804|PTHR19136|PTHR19136:SF78|SSF53448
ALIDE_RS09815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:1.20.5.170
ALIDE_RS09825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002937|IPR023753	Amine oxidase|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF01593|PR00419|PTHR10742|PTHR10742:SF266|SSF51905
ALIDE_RS09830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022791	Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD		PF03706|PTHR39087|TIGR00374
ALIDE_RS09835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001173|IPR029044	Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases		G3DSA:3.90.550.10|PF00535|PTHR10859|PTHR10859:SF86|SSF53448
ALIDE_RS09840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001539|IPR032525	Peptidase U32|Peptidase family U32, C-terminal	GO:0006508|GO:0008233	PF01136|PF16325|PS01276|PTHR30217|PTHR30217:SF6
ALIDE_RS09845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029058	Alpha/Beta hydrolase fold		G3DSA:3.40.50.1820|SSF53474
ALIDE_RS09850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS09855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002781	Transmembrane protein TauE-like	GO:0016021	PF01925
ALIDE_RS09860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR002197|IPR009057|IPR011006	CheY-like superfamily|DNA binding HTH domain,  Fis-type|Homeodomain-like|Signal transduction response regulator, receiver domain	GO:0000160|GO:0003677|GO:0043565	G3DSA:1.10.10.60|G3DSA:3.40.50.2300|PF00072|PF02954|PR01590|PTHR26402|PTHR26402:SF344|SM00448|SSF46689|SSF52172
ALIDE_RS09865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR004358	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:3.30.565.10|PF02518|PR00344|PTHR24423|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS09870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002994	Surfeit locus 1/Shy1	GO:0016020	PF02104|PTHR23427|PTHR23427:SF6
ALIDE_RS09875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005171|IPR014210	Cytochrome C oxidase subunit IV, prokaryotes|Cytochrome o ubiquinol oxidase subunit IV	GO:0008827|GO:0015990|GO:0016021	PF03626|PTHR36835|TIGR02847
ALIDE_RS09880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000298|IPR013833|IPR014206|IPR024791	Cytochrome c oxidase subunit III|Cytochrome c oxidase subunit III domain|Cytochrome c oxidase, subunit III, 4-helical bundle|Cytochrome o ubiquinol oxidase, subunit III	GO:0004129|GO:0005886|GO:0008827|GO:0015002|GO:0016020|GO:0019646|GO:0022904	G3DSA:1.20.120.80|PF00510|PTHR11403|PTHR11403:SF2|SSF81452|TIGR02842
ALIDE_RS09885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000883|IPR014207|IPR023615|IPR023616	Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I domain|Cytochrome c oxidase, subunit I, copper-binding site|Cytochrome o ubiquinol oxidase, subunit I	GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0016682|GO:0020037|GO:0055114	G3DSA:1.20.210.10|PF00115|PR01165|PS00077|PTHR10422|PTHR10422:SF26|SSF81442|TIGR02843
ALIDE_RS09890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002429|IPR006333|IPR008972|IPR010514|IPR011759	COX aromatic rich motif|Cupredoxin|Cytochrome C oxidase subunit II, transmembrane domain|Cytochrome c oxidase subunit II C-terminal|Cytochrome o ubiquinol oxidase subunit II	GO:0004129|GO:0005507|GO:0008827|GO:0016020|GO:0016021|GO:0016682|GO:0022900|GO:0055114	G3DSA:1.10.287.90|G3DSA:2.60.40.420|PF00116|PF06481|PIRSF000292|PTHR22888|PTHR22888:SF13|SSF49503|SSF81464|TIGR01433
ALIDE_RS09895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005829|IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain|Sugar transporter, conserved site	GO:0005215|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PS00216|PTHR23508|PTHR23508:SF16|SSF103473
ALIDE_RS09900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006260|IPR014161	Tol-Pal system, TolA|TonB, C-terminal	GO:0005215|GO:0006810|GO:0016020	G3DSA:3.30.1150.10|PF13103|SSF101447|SSF74653|TIGR01352|TIGR02794
ALIDE_RS09905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003400	Biopolymer transport protein ExbD/TolR	GO:0005215|GO:0006810|GO:0016020	PF02472|PTHR30558
ALIDE_RS09910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002898|IPR014163	MotA/TolQ/ExbB proton channel|Tol-Pal system, TolQ	GO:0006810|GO:0008565|GO:0015031|GO:0016020|GO:0016021	PF01618|PTHR30625|PTHR30625:SF3|TIGR02796
ALIDE_RS09915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006683|IPR006684|IPR029069	Acyl-CoA thioester hydrolase YbgC/YbaW family|HotDog domain|Thioesterase domain	GO:0016787	G3DSA:3.10.129.10|PF03061|PIRSF003230|PTHR31793|PTHR31793:SF9|SSF54637|TIGR00051
ALIDE_RS09920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004838|IPR004839|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0009058|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PS00105|PTHR11751|PTHR11751:SF401|SSF53383
ALIDE_RS09925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006027|IPR011605	NusB antitermination factor|NusB/RsmB/TIM44	GO:0003723|GO:0006353|GO:0006355	G3DSA:1.10.940.10|MF_00073|PF01029|PTHR11078|SSF48013|TIGR01951
ALIDE_RS09930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002180	6,7-dimethyl-8-ribityllumazine synthase	GO:0009231|GO:0009349	G3DSA:3.40.50.960|MF_00178|PF00885|PTHR21058|SSF52121|TIGR00114
ALIDE_RS09935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000422|IPR017945|IPR032677	3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB|DHBP synthase RibB-like alpha/beta domain|GTP cyclohydrolase II	GO:0008686|GO:0009231	G3DSA:3.90.870.10|MF_00180|PF00925|PF00926|PIRSF001259|PTHR21327|PTHR21327:SF6|SSF142695|SSF55821|TIGR00506
ALIDE_RS09940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR012675	2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain	GO:0009055|GO:0051536	G3DSA:3.10.20.30|PF00111|SSF54292
ALIDE_RS09945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015797	NUDIX hydrolase domain-like	GO:0016787	G3DSA:3.90.79.10|PTHR12318|PTHR12318:SF0|SSF55811
ALIDE_RS09950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PTHR24322|PTHR24322:SF530|SM00822|SSF51735
ALIDE_RS09955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006334|IPR007370	Glutamate--cysteine ligase|Glutamate--cysteine ligase, monofunctional	GO:0004357|GO:0006750	MF_00578|PF04262|PTHR38761|SSF55931|TIGR01434
ALIDE_RS09960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032692	Integral membrane protein YccS, N-terminal		PF12805|PF13515|PTHR30509|PTHR30509:SF8
ALIDE_RS09970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006175|IPR013813	Endoribonuclease L-PSP/chorismate mutase-like|YjgF/YER057c/UK114 family		G3DSA:3.30.1330.40|PF01042|PTHR11803|SSF55298
ALIDE_RS09975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007419|IPR017224|IPR023753	BFD-like [2Fe-2S]-binding domain|FAD/NAD(P)-binding domain|Opine oxidase, subunit A/hydrogen cyanide synthase, subunit B	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF04324|PF07992|PIRSF037495|PR00368|PR00411|PTHR22912|PTHR22912:SF141|SSF51905
ALIDE_RS09980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR012675	2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain	GO:0009055|GO:0051536	G3DSA:3.10.20.30|PF13510|SSF54292
ALIDE_RS09985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR023753	FAD dependent oxidoreductase|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|PTHR13847|PTHR13847:SF180|SSF51905|SSF54373
ALIDE_RS09990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS09995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30427|SSF46785|SSF53850
ALIDE_RS10000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006073|IPR016478|IPR019991|IPR023179|IPR027417	GTP binding domain|GTP-binding protein, orthogonal bundle domain|GTP-binding protein, ribosome biogenesis|GTPase, MTG1|P-loop containing nucleoside triphosphate hydrolase	GO:0005525	G3DSA:1.10.1580.10|G3DSA:3.40.50.300|PF01926|PIRSF006230|PTHR11089|SSF52540|TIGR03596
ALIDE_RS10005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily		SSF50998
ALIDE_RS10010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006145|IPR006224|IPR020103	Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982	PF00849|PS01129|PTHR11079|PTHR11079:SF60|SSF55120
ALIDE_RS10020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003156	DHHA1 domain	GO:0003676	PF02272|SSF64182
ALIDE_RS10025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010290|IPR020846	Major facilitator superfamily domain|Transmembrane secretion effector		G3DSA:1.20.1250.20|PF05977|PTHR23513|PTHR23513:SF9|SSF103473
ALIDE_RS10030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016071	Staphylococcal nuclease (SNase-like), OB-fold		G3DSA:2.40.50.90|PF00565|PTHR12302|PTHR12302:SF0|SM00318|SSF50199
ALIDE_RS10035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620|IPR004626	EamA domain|RarD protein	GO:0005215|GO:0005887|GO:0006810|GO:0016020|GO:0016021	PF00892|PTHR22911|PTHR22911:SF57|SSF103481|TIGR00688
ALIDE_RS10040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000748|IPR006145|IPR018496|IPR020103	Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866	PF00849|PS01149|PTHR21600|PTHR21600:SF23|SSF55120|TIGR00093
ALIDE_RS10045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011055|IPR016047	Duplicated hybrid motif|Peptidase M23		G3DSA:2.60.40.1590|G3DSA:2.70.70.10|PF01551|PTHR21666|SSF51261
ALIDE_RS10050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000362|IPR008948|IPR018951|IPR020557|IPR022761|IPR024083	Fumarase C, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like	GO:0003824|GO:0006099|GO:0016829	G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|PF00206|PF10415|PR00149|PS00163|PTHR11444|PTHR11444:SF25|SSF48557
ALIDE_RS10055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005184|IPR025485	Domain of unknown function DUF306, Meta/HslJ|Domain of unknown function DUF4377		PF03724|PF14302
ALIDE_RS10060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010323|IPR011990	Protein of unknown function DUF924|Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.20.58.320|G3DSA:1.25.40.10|PF06041|PTHR23004|PTHR23004:SF7|SSF48452
ALIDE_RS10065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000924|IPR001412|IPR004514|IPR011035|IPR014729|IPR020056|IPR020058|IPR020059|IPR020061|IPR022861	Aminoacyl-tRNA synthetase, class I, conserved site|Glutamine-tRNA ligase, bacterial|Glutamine-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain|Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain|Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain|Rossmann-like alpha/beta/alpha sandwich fold	GO:0000166|GO:0004812|GO:0004819|GO:0005524|GO:0005737|GO:0006412|GO:0006418|GO:0006425|GO:0016876|GO:0043039	G3DSA:1.10.1160.10|G3DSA:2.40.240.10|G3DSA:3.40.50.620|G3DSA:3.90.800.10|MF_00126|PF00749|PF03950|PR00987|PS00178|PTHR11451|PTHR11451:SF29|SSF50715|SSF52374|TIGR00440
ALIDE_RS10075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001874|IPR018509	Dehydroquinase, class II|Dehydroquinase, class II, conserved site	GO:0003855	G3DSA:3.40.50.9100|MF_00169|PD004527|PF01220|PIRSF001399|PS01029|PTHR21272|SSF52304|TIGR01088
ALIDE_RS10080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR000639|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like	GO:0003824	G3DSA:3.40.50.1820|PF12697|PR00111|PR00412|PTHR10992|SSF53474
ALIDE_RS10085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000352	Peptide chain release factor class I/class II	GO:0003747|GO:0006415	G3DSA:3.30.160.200|PF00472|PS00745|PTHR11075|SSF75620
ALIDE_RS10090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004183|IPR014436	Extradiol aromatic ring-opening dioxygenase, DODA type|Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B	GO:0006725|GO:0008198|GO:0008270|GO:0016491|GO:0016701|GO:0055114	G3DSA:3.40.830.10|PF02900|PIRSF006157|PTHR30096|PTHR30096:SF0|SSF53213
ALIDE_RS10095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003140|IPR029058	Alpha/Beta hydrolase fold|Phospholipase/carboxylesterase/thioesterase	GO:0016787	G3DSA:3.40.50.1820|PF02230|PTHR10655|SSF53474
ALIDE_RS10100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021382	Protein of unknown function DUF3014		PF11219
ALIDE_RS10105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000485|IPR011008|IPR011991|IPR019887|IPR019888	AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0005622|GO:0006355|GO:0043565	G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|PTHR30154|PTHR30154:SF28|SM00344|SSF46785|SSF54909
ALIDE_RS10110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004660|IPR005474|IPR009014|IPR017600|IPR029061|IPR033247	2-oxo-acid dehydrogenase E1 component homodimeric type|Alpha-ketoglutarate dehydrogenase|Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase family|Transketolase, N-terminal	GO:0003824|GO:0008152|GO:0016491|GO:0055114	G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PIRSF000156|PTHR11624|PTHR11624:SF67|SSF52518|SSF52922|TIGR00759|TIGR03186
ALIDE_RS10115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000120|IPR023631	Amidase|Amidase signature domain	GO:0016884	G3DSA:3.90.1300.10|PF01425|PTHR11895|SSF75304
ALIDE_RS10120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS10125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009057|IPR014875	Homeodomain-like|Mor transcription activator	GO:0003677	G3DSA:1.10.10.60|PF08765|SSF46689
ALIDE_RS10135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000119|IPR010992	Histone-like DNA-binding protein|Integration host factor (IHF)-like DNA-binding domain	GO:0003677	G3DSA:4.10.520.10|PF00216|PR01727|PTHR33175|SM00411|SSF47729
ALIDE_RS10150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR024252	Protein of unknown function DUF2528		PD077587|PF10800
ALIDE_RS10180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR010982|IPR027417	AAA+ ATPase domain|Lambda repressor-like, DNA-binding domain|P-loop containing nucleoside triphosphate hydrolase	GO:0003677	G3DSA:1.10.260.40|G3DSA:3.40.50.300|PF13401|PTHR35894|SSF52540
ALIDE_RS10185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337	Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|SSF53098
ALIDE_RS10195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011991	Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|SSF46785
ALIDE_RS10205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982	Lambda repressor-like, DNA-binding domain	GO:0003677	G3DSA:1.10.260.40
ALIDE_RS10215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR026365	Phage-associated protein, BcepMu gp16 family		TIGR04111
ALIDE_RS10220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982|IPR026365	Lambda repressor-like, DNA-binding domain|Phage-associated protein, BcepMu gp16 family	GO:0003677	SSF47413|TIGR04111
ALIDE_RS10240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025140	Putative 2/3 transmembrane domain holin		PF13272
ALIDE_RS10245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008258|IPR023346	Lysozyme-like domain|Transglycosylase SLT domain 1		G3DSA:1.10.530.10|PF01464|PTHR21666|PTHR21666:SF223|SSF53955
ALIDE_RS10260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000962	Zinc finger, DksA/TraR C4-type	GO:0008270	PF01258|SSF57716
ALIDE_RS10265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR020269	Bacteriophage Mu, Gp25		PF10805
ALIDE_RS10275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021874	Bacteriophage Mu, Gp27		PF11985
ALIDE_RS10280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004921	Terminase, large subunit		PF03237
ALIDE_RS10285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009279	Protein of unknown function DUF935		PF06074
ALIDE_RS10290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006528	Phage head morphogenesis domain		PF04233
ALIDE_RS10295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006522	Phage virion morphogensis protein		PF05069|TIGR01635
ALIDE_RS10300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012106	Protease, Mu phage/prophage I type		PF10123|PIRSF016624
ALIDE_RS10310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018774	Bacteriophage Mu, GpT		PF10124
ALIDE_RS10315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				SSF160059
ALIDE_RS10320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009752	Bacteriophage Mu, Gp36		PF07030
ALIDE_RS10345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014915	Bacteriophage TLS, TfmB		PF08809
ALIDE_RS10395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002559|IPR008490	Transposase InsH, N-terminal|Transposase, IS4-like	GO:0003677|GO:0004803|GO:0006313	PF01609|PF05598
ALIDE_RS10400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025484	Domain of unknown function DUF4376		PF14301
ALIDE_RS10405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PTHR30349|PTHR30349:SF16
ALIDE_RS10410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|PTHR30346:SF0|SSF46785|SSF53850
ALIDE_RS10415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|PTHR11751|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS10420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR11662|PTHR11662:SF3|SSF103473
ALIDE_RS10425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002204|IPR006115|IPR008927|IPR013328|IPR015815|IPR016040|IPR029154	3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|3-hydroxyisobutyrate dehydrogenase-related, conserved site|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0004616|GO:0016491|GO:0051287|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PS00895|PTHR22981|PTHR22981:SF27|SSF48179|SSF51735
ALIDE_RS10430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001509|IPR016040	NAD(P)-binding domain|NAD-dependent epimerase/dehydratase, N-terminal domain	GO:0003824|GO:0050662	G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF01370|PTHR10366|PTHR10366:SF228|SSF51735
ALIDE_RS10435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010737|IPR031475	Putative nucleotide-binding C-terminal domain|Putative sugar-binding, N-terminal domain		PF07005|PF17042|PTHR30304|PTHR30304:SF3|SSF142764
ALIDE_RS10440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001303	Class II aldolase/adducin N-terminal		G3DSA:3.40.225.10|PF00596|PTHR22789|PTHR22789:SF6|SM01007|SSF53639
ALIDE_RS10445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013022|IPR026040	Hydroxypyruvate isomerase-like|Xylose isomerase-like, TIM barrel domain		G3DSA:3.20.20.150|PF01261|PIRSF006241|PTHR12110|PTHR12110:SF12|SSF51658
ALIDE_RS10450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010384|IPR024079	Metallopeptidase, catalytic domain|MtfA family	GO:0008237	G3DSA:3.40.390.10|PF06167|PTHR30164|SSF55486
ALIDE_RS10455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004843|IPR010138|IPR029052	Calcineurin-like phosphoesterase domain, apaH type|Metallo-dependent phosphatase-like|UDP-2,3-diacylglucosamine hydrolase	GO:0005737|GO:0009245|GO:0016462|GO:0016787	G3DSA:3.60.21.10|MF_00575|PF00149|PTHR34990|PTHR34990:SF1|SSF56300
ALIDE_RS10460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002130|IPR020892|IPR024936|IPR029000	Cyclophilin-like domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase|Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	GO:0000413|GO:0003755|GO:0006457	G3DSA:2.40.100.10|PF00160|PIRSF001467|PR00153|PS00170|PTHR11071|PTHR11071:SF265|SSF50891
ALIDE_RS10465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002130|IPR020892|IPR024936|IPR029000	Cyclophilin-like domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase|Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain|Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	GO:0000413|GO:0003755|GO:0006457	G3DSA:2.40.100.10|PF00160|PR00153|PS00170|PTHR11071|PTHR11071:SF192|SSF50891
ALIDE_RS10470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005490	L,D-transpeptidase catalytic domain	GO:0016740	G3DSA:2.40.440.10|PF03734|PTHR36699|SSF141523
ALIDE_RS10475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990|IPR019734|IPR032710	NTF2-like domain|Tetratricopeptide repeat|Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.25.40.10|G3DSA:3.10.450.50|PF13414|PF13432|PTHR23083|SM00028|SSF48452|SSF54427
ALIDE_RS10480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009080|IPR014729|IPR015273|IPR015803|IPR024909|IPR032678	Aminoacyl-tRNA synthetase, class 1a, anticodon-binding|Cysteine-tRNA ligase|Cysteinyl-tRNA synthetase, class Ia, DALR|Cysteinyl-tRNA synthetase/mycothiol ligase|Rossmann-like alpha/beta/alpha sandwich fold|tRNA synthetases class I, catalytic domain	GO:0000166|GO:0004812|GO:0004817|GO:0005524|GO:0005737|GO:0006418|GO:0006423	G3DSA:1.20.120.640|G3DSA:3.40.50.620|MF_00041|PF01406|PF09190|PR00983|PTHR10890|SM00840|SSF47323|SSF52374|TIGR00435
ALIDE_RS10485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003265|IPR011257|IPR023170	DNA glycosylase|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain	GO:0003824|GO:0006281|GO:0006284	G3DSA:1.10.1670.10|G3DSA:1.10.340.30|PF00730|PTHR10242|PTHR10242:SF0|SM00478|SSF48150
ALIDE_RS10490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001095|IPR029045	Acetyl-CoA carboxylase, alpha subunit|ClpP/crotonase-like domain	GO:0003989|GO:0006633|GO:0009317	G3DSA:3.90.226.10|MF_00823|PF03255|PR01069|PTHR22855|PTHR22855:SF42|SSF52096|TIGR00513
ALIDE_RS10495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011063|IPR012094|IPR012795|IPR014729|IPR015262	Rossmann-like alpha/beta/alpha sandwich fold|tRNA(Ile)-lysidine synthase|tRNA(Ile)-lysidine synthase , substrate-binding domain|tRNA(Ile)-lysidine synthase, N-terminal|tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal	GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879	G3DSA:3.40.50.620|MF_01161|PF01171|PF09179|PTHR11807|PTHR11807:SF2|SSF52402|SSF82829|TIGR02432
ALIDE_RS10500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001048|IPR001057|IPR001341|IPR002912|IPR005260|IPR018042|IPR027795	ACT domain|Aspartate kinase domain|Aspartate kinase, conserved site|Aspartate kinase, monofunctional class|Aspartate/glutamate/uridylate kinase|GATS-like  ACT domain|Glutamate/acetylglutamate kinase	GO:0004072|GO:0006561|GO:0008152|GO:0008652|GO:0009089|GO:0016597	G3DSA:3.40.1160.10|PF00696|PF01842|PF13840|PIRSF000726|PR00474|PS00324|PTHR21499|PTHR21499:SF27|SSF53633|SSF55021|TIGR00656|TIGR00657
ALIDE_RS10505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001807|IPR014743	Chloride channel, core|Chloride channel, voltage gated	GO:0005216|GO:0005247|GO:0006821|GO:0016020|GO:0055085	G3DSA:1.10.3080.10|PF00654|PR00762|PTHR11689|PTHR11689:SF14|SSF81340
ALIDE_RS10515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR015893	DNA-binding HTH domain, TetR-type|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal	GO:0003677	G3DSA:1.10.357.10|PF00440|PTHR30055|SSF46689
ALIDE_RS10520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS10525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS10530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011075|IPR013570|IPR015893	Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal|Transcription regulator YsiA, C-terminal	GO:0003677	G3DSA:1.10.357.10|PF08359|SSF48498
ALIDE_RS10535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR032317	RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF16576|PTHR30469|SSF111369|TIGR01730
ALIDE_RS10540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003838|IPR025857	ABC transporter permease protein domain|MacB-like periplasmic core domain	GO:0016020	PF02687|PF12704|PTHR30489
ALIDE_RS10545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|SM00382|SSF52540
ALIDE_RS10550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002477|IPR011757|IPR011970|IPR023346|IPR031304	Lysozyme-like domain|Lytic murein transglycosylase|Lytic transglycosylase MltB|Peptidoglycan binding-like|Transglycosylase SLT domain 2		G3DSA:1.10.101.10|G3DSA:1.10.530.10|PF01471|PF13406|PTHR30163|PTHR30163:SF2|SSF47090|SSF53955|TIGR02283
ALIDE_RS10555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012337|IPR013520|IPR013620|IPR023607	Exodeoxyribonuclease I|Exonuclease C-terminal|Exonuclease, RNase T/DNA polymerase III|Ribonuclease H-like domain	GO:0003676|GO:0004529|GO:0006281|GO:0008852	G3DSA:3.30.420.10|PF00929|PF08411|PIRSF000977|PTHR11046|PTHR11046:SF2|SM00479|SSF53098
ALIDE_RS10560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003000|IPR026587|IPR026591|IPR029035	DHS-like NAD/FAD-binding domain|Sirtuin family|Sirtuin family, catalytic core small domain|Sirtuin, class II	GO:0070403	G3DSA:3.30.1600.10|G3DSA:3.40.50.1220|MF_01967|PF02146|PTHR11085|PTHR11085:SF22|SSF52467
ALIDE_RS10565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002549|IPR003018|IPR029016	GAF domain|GAF domain-like|Transmembrane protein TqsA-like	GO:0005515	G3DSA:3.30.450.40|PF01594|PF13185|PTHR21716|SM00065|SSF55781
ALIDE_RS10570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR016181	Acyl-CoA N-acyltransferase|GNAT domain	GO:0008080	G3DSA:3.40.630.30|PF13302|PTHR13256|PTHR13256:SF19|SSF55729
ALIDE_RS10575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005765|IPR029057	Phosphoribosyltransferase-like|Uracil phosphoribosyl transferase	GO:0004845|GO:0006223	G3DSA:3.40.50.2020|MF_01218_B|PF14681|PTHR10285|SSF53271|TIGR01091
ALIDE_RS10580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzyme		G3DSA:3.40.50.1100|PF00291|PTHR10314|PTHR10314:SF124|SSF53686
ALIDE_RS10585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002876|IPR017856|IPR026563|IPR026564|IPR029072	Integrase, N-terminal zinc-binding domain-like|Transcriptional regulator TACO1-like|Transcriptional regulator TACO1-like, domain 2|Transcriptional regulator TACO1-like, domain 3|YebC-like		G3DSA:1.10.10.200|G3DSA:3.30.1270.10|G3DSA:3.30.70.980|MF_00693|PF01709|PTHR12532|SSF75625
ALIDE_RS10595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013783|IPR014116|IPR017896|IPR017900|IPR032879	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Cytochrome c oxidase cbb3 type, accessory protein FixG|FixG, C-terminal immunoglobulin-like domain|Immunoglobulin-like fold	GO:0016021	G3DSA:2.60.40.10|G3DSA:3.30.70.20|PF11614|PF12801|PF13746|PS00198|PTHR24960|PTHR24960:SF45|SSF54862|TIGR02745
ALIDE_RS10600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002585	Cytochrome ubiquinol oxidase subunit 1	GO:0016020	PF01654|PIRSF006446|PTHR30365|PTHR30365:SF8
ALIDE_RS10605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003317	Cytochrome ubiquinol oxidase subunit 2	GO:0016020|GO:0055114	PF02322|PIRSF000267|PTHR30365|PTHR30365:SF4|TIGR00203
ALIDE_RS10615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007300	CidB/LrgB family		PF04172|PTHR30249|PTHR30249:SF5
ALIDE_RS10620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005538	LrgA/CidA family	GO:0016021	PF03788|PTHR33931|PTHR33931:SF2
ALIDE_RS10625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR004839|IPR011991|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170	G3DSA:1.10.10.10|G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PF00392|PTHR11751|PTHR11751:SF314|SM00345|SSF46785|SSF53383
ALIDE_RS10630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR004046|IPR010987|IPR012336	Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold	GO:0005515	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|PTHR11260|PTHR11260:SF178|SSF47616|SSF52833
ALIDE_RS10635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027417|IPR033186	Helicase HerA-like C-terminal|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF05872|PTHR30121|PTHR30121:SF3|SSF52540
ALIDE_RS10640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002876|IPR017856|IPR026563|IPR026564|IPR029072	Integrase, N-terminal zinc-binding domain-like|Transcriptional regulator TACO1-like|Transcriptional regulator TACO1-like, domain 2|Transcriptional regulator TACO1-like, domain 3|YebC-like		G3DSA:1.10.10.200|G3DSA:3.30.1270.10|G3DSA:3.30.70.980|MF_00693|PF01709|PTHR12532|SSF75625|TIGR01033
ALIDE_RS10645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000115|IPR011054|IPR013815|IPR013816|IPR016185|IPR020560|IPR020561|IPR020562	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Phosphoribosylglycinamide synthetase|Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain|Phosphoribosylglycinamide synthetase, C-domain|Phosphoribosylglycinamide synthetase, N-terminal|Pre-ATP-grasp domain|Rudiment single hybrid motif	GO:0003824|GO:0004637|GO:0005524|GO:0009113	G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|G3DSA:3.90.600.10|MF_00138|PF01071|PF02843|PF02844|PTHR10520|SM01209|SM01210|SSF51246|SSF52440|SSF56059|TIGR00877
ALIDE_RS10650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001260|IPR018375	Coproporphyrinogen III oxidase, aerobic|Coproporphyrinogen III oxidase, conserved site	GO:0004109|GO:0006779|GO:0055114	G3DSA:3.40.1500.10|MF_00333|PF01218|PIRSF000166|PR00073|PS01021|PTHR10755|SSF102886
ALIDE_RS10655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004394	Protein Iojap/ribosomal silencing factor RsfS		G3DSA:3.30.460.10|MF_01477|PF02410|PTHR21043|SSF81301|TIGR00090
ALIDE_RS10660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003742|IPR029026|IPR029028	Alpha/beta knot methyltransferases|SPOUT methyltransferase, predicted|tRNA (guanine-N1-)-methyltransferase, N-terminal	GO:0005737|GO:0006364|GO:0008168	G3DSA:3.40.1280.10|MF_00658|PF02590|PIRSF004505|PTHR33603|PTHR33603:SF1|SSF75217
ALIDE_RS10665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003697|IPR029001	Inosine triphosphate pyrophosphatase-like|Maf-like protein	GO:0005737	G3DSA:3.90.950.10|MF_00528|PF02545|PIRSF006305|SSF52972|TIGR00172
ALIDE_RS10670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000595|IPR011991|IPR012318|IPR014710|IPR018490	Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|PTHR24567|PTHR24567:SF30|SM00100|SM00419|SSF46785|SSF51206
ALIDE_RS10675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003143|IPR009056|IPR011048|IPR015943	Cytochrome c-like domain|Cytochrome cd1-nitrite reductase, C-terminal domain|Cytochrome cd1-nitrite reductase-like, haem d1 domain|WD40/YVTN repeat-like-containing domain	GO:0005515|GO:0009055|GO:0020037	G3DSA:1.10.760.10|G3DSA:2.130.10.10|G3DSA:2.140.10.20|PF02239|PF13442|SSF46626|SSF51004
ALIDE_RS10680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007197|IPR013785|IPR017200|IPR023992	Aldolase-type TIM barrel|Coenzyme PQQ synthesis protein E|Heme D1 biosynthesis, radical SAM protein NirJ|Radical SAM	GO:0003824|GO:0051536	G3DSA:3.20.20.70|PF04055|PF13353|PIRSF037420|PTHR11228|PTHR11228:SF7|SSF102114|TIGR04051
ALIDE_RS10685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011991	Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|PTHR30154|PTHR30154:SF27
ALIDE_RS10690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011991	Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|PTHR30154|PTHR30154:SF21
ALIDE_RS10695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003143|IPR011048	Cytochrome cd1-nitrite reductase, C-terminal domain|Cytochrome cd1-nitrite reductase-like, haem d1 domain		G3DSA:2.140.10.20|PF02239|SSF51004
ALIDE_RS10700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009056	Cytochrome c-like domain	GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF13442|SSF46626
ALIDE_RS10705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003143|IPR009056|IPR011048	Cytochrome c-like domain|Cytochrome cd1-nitrite reductase, C-terminal domain|Cytochrome cd1-nitrite reductase-like, haem d1 domain	GO:0009055|GO:0020037	G3DSA:1.10.760.10|G3DSA:2.140.10.20|PF02239|PF13442|SSF46626|SSF51004
ALIDE_RS10710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000878|IPR003043|IPR006366|IPR014776|IPR014777	Tetrapyrrole methylase|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|Uroporphiryn-III C-methyltransferase, conserved site|Uroporphyrin-III C-methyltransferase	GO:0006779|GO:0008152|GO:0008168|GO:0055114	G3DSA:3.30.950.10|G3DSA:3.40.1010.10|PF00590|PS00839|PTHR21091|PTHR21091:SF16|SSF53790|TIGR01469
ALIDE_RS10715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004659|IPR012340|IPR019307|IPR022967	Nucleic acid-binding, OB-fold|RNA-binding domain, S1|RNA-binding protein AU-1/Ribonuclease E/G|Ribonuclease E/G	GO:0003723|GO:0004540|GO:0006396	G3DSA:2.40.50.140|PF10150|PTHR30001|SM00316|SSF50249|TIGR00757
ALIDE_RS10720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR029787	GGDEF domain|Nucleotide cyclase		G3DSA:3.30.70.270|PF00990|PTHR10799|PTHR10799:SF750|SM00267|SSF55073|TIGR00254
ALIDE_RS10725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005119	LysR, substrate-binding		G3DSA:3.40.190.10|PF03466|PTHR30346|PTHR30346:SF0|SSF53850
ALIDE_RS10730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004839|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0009058|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PTHR11751|PTHR11751:SF301|SSF53383
ALIDE_RS10735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|PTHR30126:SF6|SSF46785|SSF53850
ALIDE_RS10740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002762	Cobalamin (vitamin B12) biosynthesis CbiX	GO:0009236|GO:0016852	G3DSA:3.40.50.1400|PF01903|PTHR33542|SSF53800
ALIDE_RS10745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005495|IPR030923	LPS export ABC transporter permease LptG|Permease LptG/LptF-related	GO:0016021|GO:0043190|GO:0055085	PF03739|PTHR33529|PTHR33529:SF1|TIGR04408
ALIDE_RS10750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005495|IPR020846|IPR030922	LPS export ABC transporter permease LptF|Major facilitator superfamily domain|Permease LptG/LptF-related	GO:0016021|GO:0043190|GO:0055085	PF03739|PTHR33529|PTHR33529:SF2|SSF103473|TIGR04407
ALIDE_RS10755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000819|IPR008283|IPR011356|IPR023042	Peptidase M17, leucine aminopeptidase|Peptidase M17, leucine aminopeptidase/peptidase B|Peptidase M17, leucyl aminopeptidase, C-terminal|Peptidase M17, leucyl aminopeptidase, N-terminal	GO:0004177|GO:0005622|GO:0005737|GO:0006508|GO:0008235|GO:0019538|GO:0030145	G3DSA:3.40.220.10|G3DSA:3.40.630.10|MF_00181|PF00883|PF02789|PR00481|PS00631|PTHR11963|PTHR11963:SF13|SSF52949|SSF53187
ALIDE_RS10760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007459	DNA polymerase III chi subunit, HolC	GO:0003677|GO:0003887|GO:0006260	G3DSA:3.40.50.10110|PF04364|PTHR38767|SSF102400
ALIDE_RS10770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000709|IPR028081|IPR028082	Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I	GO:0006865	G3DSA:3.40.50.2300|PF13458|PR00337|PTHR30483|PTHR30483:SF20|SSF53822
ALIDE_RS10775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006139|IPR006140|IPR016040	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain	GO:0008152|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF00389|PF02826|PTHR10996|PTHR10996:SF127|SSF51735|SSF52283
ALIDE_RS10785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:3.40.630.10|PTHR11014|PTHR11014:SF63|SSF53187
ALIDE_RS10800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018724	2OG-Fe dioxygenase		PF10014
ALIDE_RS10805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006015|IPR006016|IPR014729	Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA	GO:0006950	G3DSA:3.40.50.620|PF00582|PIRSF006276|PR01438|PTHR31964|PTHR31964:SF45|SSF52402
ALIDE_RS10810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012312|IPR012827|IPR016131	Haemerythrin, iron-binding site|Haemerythrin, metal-binding domain|Haemerythrin-like	GO:0046872	G3DSA:1.20.120.50|PF01814|PS00550|PTHR37164|SSF47188|TIGR02481
ALIDE_RS10815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS10820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020610|IPR020615|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PTHR18919|PTHR18919:SF95|SSF53901|TIGR01930
ALIDE_RS10825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|PTHR24322|PTHR24322:SF551|SSF51735
ALIDE_RS10830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006145|IPR006224|IPR020103	Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982	PF00849|PS01129|PTHR11079|PTHR11079:SF86|SSF55120
ALIDE_RS10835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR001789|IPR003594|IPR003661|IPR004358|IPR011006|IPR013767	CheY-like superfamily|Histidine kinase-like ATPase, C-terminal domain|PAS domain|PAS fold|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain	GO:0000155|GO:0000160|GO:0006355|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF00512|PF00989|PF02518|PF13188|PR00344|PTHR24423|PTHR24423:SF544|SM00091|SM00387|SM00388|SM00448|SSF47384|SSF52172|SSF55785|SSF55874|TIGR00229
ALIDE_RS10840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001179|IPR023566	FKBP-type peptidyl-prolyl cis-trans isomerase domain|Peptidyl-prolyl cis-trans isomerase, FKBP-type	GO:0006457	G3DSA:3.10.50.40|PF00254|PTHR10516|SSF54534
ALIDE_RS10845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000792|IPR001789|IPR011006|IPR011991|IPR016032	CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|PTHR26402|PTHR26402:SF151|SM00421|SM00448|SSF46894|SSF52172
ALIDE_RS10850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR011712	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain	GO:0000155|GO:0000160|GO:0016021|GO:0046983	G3DSA:3.30.565.10|PF02518|PF07730|PTHR24421|PTHR24421:SF10|SM00387|SSF55874
ALIDE_RS10860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005746|IPR012336|IPR013740|IPR017937	Redoxin|Thioredoxin|Thioredoxin, conserved site|Thioredoxin-like fold	GO:0006662|GO:0015035|GO:0016491|GO:0045454	G3DSA:3.40.30.10|PF08534|PS00194|PTHR10438|PTHR10438:SF244|SSF52833
ALIDE_RS10865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009097	RNA ligase/cyclic nucleotide phosphodiesterase		G3DSA:3.90.1140.10|PF13563|PTHR35561|SSF55144
ALIDE_RS10875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025961	Heavy-metal resistance protein		PF13801
ALIDE_RS10880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027383	Putative zinc-finger		PF13490
ALIDE_RS10885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007627|IPR011991|IPR013249|IPR013324|IPR013325|IPR014284	RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987	G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|PTHR30173|SSF88659|SSF88946|TIGR02937
ALIDE_RS10895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001566|IPR010280|IPR012340|IPR029063|IPR030391	(Uracil-5)-methyltransferase family|23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD|Nucleic acid-binding, OB-fold|RNA methyltransferase TrmA, conserved site|S-adenosyl-L-methionine-dependent methyltransferase	GO:0003723|GO:0006396|GO:0008173	G3DSA:2.40.50.140|G3DSA:3.40.50.150|MF_01010|PF05958|PS01231|PTHR11061|PTHR11061:SF30|SSF50249|SSF53335|TIGR00479
ALIDE_RS10900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001926|IPR011780	D-serine ammonia-lyase|Tryptophan synthase beta subunit-like PLP-dependent enzyme	GO:0008721|GO:0030170|GO:0046416	G3DSA:3.40.50.1100|MF_01030|PF00291|PTHR10314|PTHR10314:SF9|SSF53686|TIGR02035
ALIDE_RS10905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000640|IPR001498|IPR009022|IPR015269|IPR020568|IPR023582	Elongation factor G, III-V domain|Impact family|Impact, N-terminal|Ribosomal protein S5 domain 2-type fold|Translation elongation factor EFG, V domain|Uncharacterised domain UPF0029, Impact, C-terminal		G3DSA:3.30.230.30|G3DSA:3.30.70.240|PF01205|PF09186|PTHR16301|SSF54211|SSF54980
ALIDE_RS10910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000923|IPR008972|IPR014068|IPR028871	Azurin, proteobacteria|Blue (type 1) copper domain|Blue (type 1) copper protein, binding site|Cupredoxin	GO:0005507|GO:0009055	G3DSA:2.60.40.420|PD003655|PF00127|PS00196|PTHR38439|PTHR38439:SF2|SSF49503|TIGR02695
ALIDE_RS10915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006638|IPR007197|IPR013704|IPR020612|IPR022946|IPR023404|IPR024560	Elongator protein 3/MiaB/NifB|Methylthiotransferase, conserved site|Radical SAM|Radical SAM, alpha/beta horseshoe|Uncharacterised protein family UPF0313|Uncharacterised protein family UPF0313, C-terminal|Uncharacterised protein family UPF0313, N-terminal	GO:0003824|GO:0051536|GO:0051539	G3DSA:3.80.30.20|MF_01251|PF04055|PF08497|PF11842|PS01278|PTHR32331|PTHR32331:SF3|SM00729|SSF102114|TIGR03904
ALIDE_RS10920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000796|IPR004838|IPR004839|IPR015421|IPR015424	Aminotransferase, class I/classII|Aminotransferases, class-I, pyridoxal-phosphate-binding site|Aspartate/other aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1	GO:0003824|GO:0006520|GO:0008483|GO:0009058|GO:0030170	G3DSA:3.40.640.10|PF00155|PR00799|PS00105|PTHR11879|PTHR11879:SF11|SSF53383
ALIDE_RS10925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001650|IPR001943|IPR004807|IPR006935|IPR014001|IPR024759|IPR027417	Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Helicase/UvrB, N-terminal|P-loop containing nucleoside triphosphate hydrolase|UVR domain|UvrABC system, subunit B|UvrB, YAD/RRR-motif-containing domain	GO:0003677|GO:0005515|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432|GO:0016787	G3DSA:3.30.2060.10|G3DSA:3.40.50.300|G3DSA:4.10.860.10|MF_00204|PF00271|PF02151|PF04851|PF12344|PTHR24029|SM00487|SM00490|SSF46600|SSF52540|TIGR00631
ALIDE_RS10930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000944|IPR010242|IPR011991	Transcription factor HTH,  IscR|Transcription regulator Rrf2-type|Winged helix-turn-helix DNA-binding domain	GO:0003690|GO:0003700|GO:0006355	G3DSA:1.10.10.10|PF02082|PTHR33221|PTHR33221:SF1|SSF46785|TIGR00738|TIGR02010
ALIDE_RS10935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000192|IPR010240|IPR015421|IPR015422|IPR015424|IPR016454|IPR020578	Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Cysteine desulfurase|Cysteine desulfurase IscS|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0030170|GO:0031071|GO:0044571	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00331|PF00266|PIRSF005572|PS00595|PTHR11601|PTHR11601:SF34|SSF53383|TIGR02006
ALIDE_RS10940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002871|IPR011339	ISC system FeS cluster assembly, IscU scaffold|NIF system FeS cluster assembly, NifU, N-terminal	GO:0005506|GO:0016226|GO:0051536	G3DSA:3.90.1010.10|PF01592|PTHR10093|PTHR10093:SF3|SSF82649|TIGR01999
ALIDE_RS10945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000361|IPR011302|IPR016092|IPR017870|IPR031108	FeS assembly protein IscA-like|FeS cluster biogenesis|FeS cluster insertion protein|FeS cluster insertion, C-terminal, conserved site|Iron-binding protein IscA, proteobacteria	GO:0005198|GO:0005506|GO:0016226|GO:0051536	G3DSA:2.60.300.12|PF01521|PS01152|PTHR10072|PTHR10072:SF48|SSF89360|TIGR00049|TIGR02011
ALIDE_RS10950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001623|IPR004640|IPR009073	Co-chaperone Hsc20|Co-chaperone HscB, C-terminal oligomerisation domain|DnaJ domain	GO:0006457|GO:0051087|GO:0051259	G3DSA:1.10.287.110|G3DSA:1.20.1280.20|MF_00682|PF07743|PTHR14021|PTHR14021:SF15|SM00271|SSF46565|SSF47144|TIGR00714
ALIDE_RS10955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010236|IPR013126|IPR018181|IPR029047|IPR029048	Heat shock protein 70 family|Heat shock protein 70, conserved site|Heat shock protein 70kD, C-terminal domain|Heat shock protein 70kD, peptide-binding domain|ISC system FeS cluster assembly, HscA chaperone	GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082	G3DSA:1.20.1270.10|G3DSA:2.60.34.10|G3DSA:3.30.30.30|G3DSA:3.30.420.40|MF_00679|PF00012|PR00301|PS00297|PS00329|PS01036|PTHR19375|PTHR19375:SF176|SSF100920|SSF100934|SSF53067|TIGR01991
ALIDE_RS10960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR001055|IPR011536|IPR012675|IPR018298	2Fe-2S ferredoxin-type iron-sulfur binding domain|Adrenodoxin|Adrenodoxin, iron-sulphur binding site|Beta-grasp domain|Ferredoxin 2Fe-2S type, proteobacteria	GO:0009055|GO:0051536|GO:0051537	G3DSA:3.10.20.30|PF00111|PR00355|PS00814|PTHR23426|SSF54292|TIGR02007
ALIDE_RS10965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006054|IPR006309|IPR012337|IPR013520	DNA polymerase 3, epsilon subunit|DNA polymerase III, epsilon subunit|Exonuclease, RNase T/DNA polymerase III|Ribonuclease H-like domain	GO:0003676|GO:0003677|GO:0003887|GO:0006260	G3DSA:3.30.420.10|PF00929|PTHR30231|PTHR30231:SF0|SM00479|SSF53098|TIGR00573|TIGR01406
ALIDE_RS10980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR023753	FAD dependent oxidoreductase|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|PTHR13847|PTHR13847:SF207|SSF51905
ALIDE_RS10985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010279	Protein of unknown function DUF883, ElaB		PF05957
ALIDE_RS10990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009937	Putative Actinobacterial Holin-X, holin superfamily III		PF07332
ALIDE_RS11000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001295|IPR005719|IPR005720|IPR012135|IPR013785	Aldolase-type TIM barrel|Dihydroorotate dehydrogenase domain|Dihydroorotate dehydrogenase, class 1/ 2|Dihydroorotate dehydrogenase, class 2|Dihydroorotate dehydrogenase, conserved site	GO:0003824|GO:0004152|GO:0005737|GO:0006207|GO:0006222|GO:0016020|GO:0016627|GO:0055114	G3DSA:3.20.20.70|MF_00225|PF01180|PIRSF000164|PS00911|PS00912|PTHR11938|SSF51395|TIGR01036
ALIDE_RS11005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004788|IPR020672	Ribose 5-phosphate isomerase, type A|Ribose-5-phosphate isomerase, type A, subgroup	GO:0004751|GO:0009052	G3DSA:3.30.70.260|G3DSA:3.40.50.1360|MF_00170|PF06026|PTHR11934|PTHR11934:SF11|SSF100950|SSF75445|TIGR00021
ALIDE_RS11010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002109|IPR012336|IPR025392	Domain of unknown function DUF4124|Glutaredoxin|Thioredoxin-like fold	GO:0009055|GO:0015035|GO:0045454	G3DSA:3.40.30.10|PF00462|PF13511|SSF52833
ALIDE_RS11015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001567|IPR024077|IPR024079|IPR024080	Metallopeptidase, catalytic domain|Neurolysin/Thimet oligopeptidase, N-terminal|Neurolysin/Thimet oligopeptidase, domain 2|Peptidase M3A/M3B	GO:0004222|GO:0006508|GO:0008237	G3DSA:1.10.1370.10|G3DSA:1.20.1050.40|G3DSA:3.40.390.10|PF01432|PTHR11804|PTHR11804:SF8|SSF55486
ALIDE_RS11020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000672|IPR016040|IPR020630|IPR020631|IPR020867	NAD(P)-binding domain|Tetrahydrofolate dehydrogenase/cyclohydrolase|Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain|Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain|Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site	GO:0003824|GO:0004488|GO:0009396|GO:0055114	G3DSA:3.40.192.10|G3DSA:3.40.50.720|MF_01576|PF00763|PF02882|PR00085|PS00766|PS00767|PTHR10025|SSF51735|SSF53223
ALIDE_RS11025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000792|IPR001789|IPR011006|IPR011991|IPR016032	CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|PTHR26402|PTHR26402:SF613|SM00421|SM00448|SSF46894|SSF52172
ALIDE_RS11030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR001610|IPR003594|IPR003661|IPR004358|IPR013767	Histidine kinase-like ATPase, C-terminal domain|PAC motif|PAS domain|PAS fold|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0006355|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF00989|PF02518|PR00344|PTHR24423|SM00086|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229
ALIDE_RS11035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004660|IPR005474|IPR009014|IPR029061|IPR033247	2-oxo-acid dehydrogenase E1 component homodimeric type|Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase family|Transketolase, N-terminal	GO:0003824|GO:0008152|GO:0016491|GO:0055114	G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PIRSF000156|PTHR11624|PTHR11624:SF67|SSF52518|SSF52922|TIGR00759
ALIDE_RS11040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR001078|IPR003016|IPR004167|IPR006256|IPR011053|IPR023213	2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain|Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex|E3-binding domain|Single hybrid motif	GO:0004742|GO:0006096|GO:0008152|GO:0016746|GO:0045254	G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|PTHR23151|PTHR23151:SF68|SSF47005|SSF51230|SSF52777|TIGR01348
ALIDE_RS11045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR003016|IPR004099|IPR006258|IPR011053|IPR012999|IPR016156|IPR023753	2-oxo acid dehydrogenase, lipoyl-binding site|Biotin/lipoyl attachment|Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD-linked reductase, dimerisation domain|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain|Single hybrid motif	GO:0004148|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0055114	G3DSA:2.40.50.100|G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF00364|PF02852|PF07992|PR00368|PR00411|PS00076|PS00189|PTHR22912|PTHR22912:SF160|SSF51230|SSF51905|SSF55424|TIGR01350
ALIDE_RS11065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS11070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003812	Fido domain		G3DSA:1.10.3290.10|PF02661|PTHR13504|PTHR13504:SF29|SSF140931
ALIDE_RS11075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30537|PTHR30537:SF15|SSF46785|SSF53850
ALIDE_RS11080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein		G3DSA:3.50.30.40|PF03737|PTHR33254|PTHR33254:SF5|SSF89562
ALIDE_RS11085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS11090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS11095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR019614|IPR029063	S-adenosyl-L-methionine-dependent methyltransferase|S-adenosylmethionine-dependent methyltransferase	GO:0008168	G3DSA:3.40.50.150|PF10672|PTHR11061|PTHR11061:SF34|SSF53335
ALIDE_RS11105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006115|IPR006183|IPR008927|IPR013328|IPR015815|IPR016040|IPR029154	3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0004616|GO:0016491|GO:0051287|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PR00076|PTHR22981|PTHR22981:SF27|SSF48179|SSF51735
ALIDE_RS11115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002740|IPR015947	EVE domain|PUA-like domain		G3DSA:3.10.590.10|PF01878|PTHR14087|SSF88697
ALIDE_RS11120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007341	Transglycosylase-associated protein	GO:0016021	PF04226|PTHR33884|PTHR33884:SF1
ALIDE_RS11125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000064	Endopeptidase, NLPC/P60 domain		G3DSA:3.90.1720.10|PF00877|PTHR21666|SSF54001
ALIDE_RS11130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002293|IPR004840|IPR004841	Amino acid permease, conserved site|Amino acid permease/ SLC12A domain|Amino acid/polyamine transporter I	GO:0003333|GO:0006810|GO:0006865|GO:0015171|GO:0016020|GO:0016021|GO:0055085	PF00324|PIRSF006060|PS00218|PTHR11785|PTHR11785:SF336
ALIDE_RS11135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004638|IPR011701|IPR020846	Drug resistance transporter EmrB/QacA subfamily|Major facilitator superfamily|Major facilitator superfamily domain	GO:0006810|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PR01036|PTHR23501|PTHR23501:SF1|SSF103473|TIGR00711
ALIDE_RS11140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001610|IPR001633|IPR006189|IPR029787	CHASE domain|EAL domain|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain		G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF03924|PF13426|PTHR33121|PTHR33121:SF13|SM00052|SM00086|SM00091|SM00267|SM01079|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254
ALIDE_RS11145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003844	Uncharacterised protein family UPF0060	GO:0016020	MF_00010|PF02694|PTHR36116|PTHR36116:SF1|SSF103481
ALIDE_RS11150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013424	PEP-CTERM protein-sorting domain		PF07589|TIGR02595
ALIDE_RS11155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003395|IPR010935|IPR011890|IPR024704|IPR027417	P-loop containing nucleoside triphosphate hydrolase|RecF/RecN/SMC, N-terminal|SMCs flexible hinge|Structural maintenance of chromosomes protein|Structural maintenance of chromosomes protein, prokaryotic	GO:0005515|GO:0005524|GO:0005694|GO:0007062|GO:0030261|GO:0051276	G3DSA:3.40.50.300|MF_01894|PF02463|PF06470|PIRSF005719|PTHR18937|PTHR18937:SF261|SM00968|SSF52540|SSF75553|TIGR02168
ALIDE_RS11160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007449	ZipA, C-terminal FtsZ-binding domain	GO:0000917|GO:0016021	G3DSA:3.30.1400.10|SM00771|SSF64383
ALIDE_RS11165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001357|IPR001679|IPR003583|IPR004149|IPR004150|IPR010994|IPR012340|IPR013839|IPR013840|IPR018239|IPR033136	BRCT domain|Helix-hairpin-helix DNA-binding motif, class 1|NAD-dependent DNA ligase|NAD-dependent DNA ligase, N-terminal|NAD-dependent DNA ligase, OB-fold|NAD-dependent DNA ligase, active site|NAD-dependent DNA ligase, adenylation|NAD-dependent DNA ligase, conserved site|Nucleic acid-binding, OB-fold|RuvA domain 2-like|Zinc-finger, NAD-dependent DNA ligase C4-type	GO:0003677|GO:0003911|GO:0006260|GO:0006281	G3DSA:1.10.150.20|G3DSA:1.10.287.610|G3DSA:2.40.50.140|G3DSA:3.30.470.30|G3DSA:3.40.50.10190|MF_01588|PF00533|PF01653|PF03119|PF03120|PF12826|PF14520|PIRSF001604|PS01055|PS01056|PTHR23389|PTHR23389:SF9|SM00278|SM00292|SM00532|SSF47781|SSF50249|SSF52113|SSF56091|TIGR00575
ALIDE_RS11170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002641|IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase|Patatin/Phospholipase A2-related	GO:0006629|GO:0008152	G3DSA:3.40.1090.10|PF01734|PTHR14226|PTHR14226:SF24|SSF52151
ALIDE_RS11175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001264|IPR001460|IPR012338|IPR023346	Beta-lactamase/transpeptidase-like|Glycosyl transferase, family 51|Lysozyme-like domain|Penicillin-binding protein, transpeptidase	GO:0008658	G3DSA:1.10.3810.10|G3DSA:3.40.710.10|PF00905|PF00912|PTHR32282|PTHR32282:SF5|SSF53955|SSF56601
ALIDE_RS11180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005829|IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain|Sugar transporter, conserved site	GO:0005215|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PS00216|PTHR23518|PTHR23518:SF2|SSF103473
ALIDE_RS11185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000086|IPR015797|IPR020084|IPR029401	NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site|Nudix hydrolase, N-terminal	GO:0016787	G3DSA:2.20.70.10|G3DSA:3.90.79.10|PF00293|PF14803|PS00893|PTHR22769|PTHR22769:SF17|SSF55811
ALIDE_RS11190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011234	Fumarylacetoacetase, C-terminal-related	GO:0003824|GO:0008152	G3DSA:3.90.850.10|PF01557|PTHR11820|PTHR11820:SF7|SSF56529
ALIDE_RS11195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR005955|IPR010987|IPR012336	Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Maleylacetoacetate isomerase|Thioredoxin-like fold	GO:0003824|GO:0005515|GO:0005737|GO:0009072	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13417|PTHR11260|PTHR11260:SF289|SSF47616|SSF52833|TIGR01262
ALIDE_RS11200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003730|IPR011324	Cytotoxic necrotizing factor-like, catalytic|Multi-copper polyphenol oxidoreductase, laccase		G3DSA:3.60.140.10|PF02578|PTHR30616|PTHR30616:SF3|SSF64438|TIGR00726
ALIDE_RS11210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010941|IPR010963|IPR029058	Alpha/Beta hydrolase fold|Poly(R)-hydroxyalkanoic acid synthase, class I|Poly-beta-hydroxybutyrate polymerase, N-terminal domain	GO:0005737|GO:0016746|GO:0042619	G3DSA:3.40.50.1820|PF07167|PTHR36837|PTHR36837:SF2|SSF53474|TIGR01838
ALIDE_RS11215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|PTHR18919|PTHR18919:SF95|SSF53901|TIGR01930
ALIDE_RS11220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR011283|IPR016040|IPR020904	Acetoacetyl-CoA reductase|NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0005737|GO:0016491|GO:0018454|GO:0042619|GO:0055114	G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|PTHR24322|PTHR24322:SF328|SM00822|SSF51735|TIGR01829
ALIDE_RS11225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR032781	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12848|PS00211|PTHR19211|PTHR19211:SF49|SM00382|SSF52540
ALIDE_RS11230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS11235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS11240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|PTHR24096:SF232|SSF56801
ALIDE_RS11245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30293|SSF46785|SSF53850
ALIDE_RS11250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002052|IPR004556|IPR007848|IPR017127|IPR029063	DNA methylase, N-6 adenine-specific, conserved site|Methyltransferase small domain|Modification methylase HemK|Ribosomal protein L3-specific, glutamine-N5-methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase	GO:0003676|GO:0005622|GO:0006479|GO:0008168|GO:0008276|GO:0009007|GO:0032259|GO:0032775	G3DSA:1.10.8.10|G3DSA:3.40.50.150|PF05175|PIRSF037167|PS00092|PTHR18895|PTHR18895:SF66|SSF53335|TIGR00536|TIGR03533
ALIDE_RS11255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002933|IPR005941|IPR011650	Peptidase M20|Peptidase M20, dimerisation domain|Succinyl-diaminopimelate desuccinylase, proteobacteria	GO:0008152|GO:0009014|GO:0009089|GO:0016787	G3DSA:3.30.70.360|G3DSA:3.40.630.10|MF_01690|PF01546|PF07687|PTHR11014|SSF53187|SSF55031|TIGR01246
ALIDE_RS11260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001482|IPR006321|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Pilus retraction protein PilT|Type II secretion system protein E	GO:0005524|GO:0006810	G3DSA:3.40.50.300|PF00437|PS00662|PTHR30486|PTHR30486:SF3|SSF52540|TIGR01420
ALIDE_RS11265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001451|IPR005664|IPR011004|IPR018357|IPR023180	Hexapeptide repeat|Hexapeptide transferase, conserved site|Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family|Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1|Trimeric LpxA-like	GO:0008666|GO:0009089|GO:0016740	G3DSA:1.10.166.10|G3DSA:2.160.10.10|MF_00811|PF14602|PF14805|PS00101|PTHR19136|PTHR19136:SF52|SSF51161|TIGR00965
ALIDE_RS11270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004839|IPR015421|IPR015422|IPR015424|IPR019878	Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2|Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria	GO:0003824|GO:0009016|GO:0009058|GO:0009089|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PTHR11751|PTHR11751:SF354|SSF53383|TIGR03538
ALIDE_RS11275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007202|IPR010207|IPR017900	4Fe-4S domain|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|Electron transport complex, RnfB/RsxB	GO:0009055|GO:0051536	G3DSA:3.30.70.20|PF04060|PF14697|PS00198|PTHR11938|PTHR11938:SF64|SSF54862|TIGR01944
ALIDE_RS11280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009656|IPR010915|IPR029058	Alpha/Beta hydrolase fold|PHB de-polymerase, C-terminal|Polyhydroxyalkanoate depolymerase		G3DSA:3.40.50.1820|PF06850|PIRSF020818|SSF53474|TIGR01849
ALIDE_RS11285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007685	RelA/SpoT	GO:0015969	G3DSA:1.10.287.860|G3DSA:3.30.460.10|PF04607|SM00954|SSF81301
ALIDE_RS11290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001269|IPR004653|IPR013785|IPR018517	Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine(20/20a) synthase	GO:0002943|GO:0003824|GO:0008033|GO:0017150|GO:0050660|GO:0055114	G3DSA:3.20.20.70|MF_02041|PF01207|PIRSF006621|PS01136|PTHR11082|PTHR11082:SF29|SSF51395|TIGR00742
ALIDE_RS11295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PTHR13078|SSF54637
ALIDE_RS11300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR015893	DNA-binding HTH domain, TetR-type|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal	GO:0003677	G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|PTHR30328|PTHR30328:SF18|SSF46689|SSF48498
ALIDE_RS11305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005097|IPR016040|IPR032095	NAD(P)-binding domain|Saccharopine dehydrogenase, C-terminal|Saccharopine dehydrogenase, NADP binding domain	GO:0016491|GO:0055114	G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF03435|PF16653|SSF51735|SSF55347
ALIDE_RS11310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020459|IPR020845	AMP-binding|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PR00154|PS00455|PTHR24096|PTHR24096:SF193|SSF56801
ALIDE_RS11315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|PTHR11751|PTHR11751:SF362|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS11320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000891|IPR013785	Aldolase-type TIM barrel|Pyruvate carboxyltransferase	GO:0003824	G3DSA:3.20.20.70|PF00682|PTHR10277|PTHR10277:SF1|SSF51569
ALIDE_RS11325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS11330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS11335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001387|IPR010359|IPR010982|IPR018653|IPR026281	Cro/C1-type helix-turn-helix domain|Domain of unknown function DUF2083,transcriptional regulator|HTH domain, IrrE-type|HTH-type transcriptional regulator RamB|Lambda repressor-like, DNA-binding domain	GO:0003677|GO:0006355|GO:0043565	G3DSA:1.10.260.40|PF01381|PF06114|PF09856|PIRSF019251|PTHR10245|SM00530|SSF47413
ALIDE_RS11340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006098|IPR006099|IPR006158|IPR006159|IPR014348|IPR016176	Cobalamin (vitamin B12)-binding domain|Cobalamin (vitamin B12)-dependent enzyme, catalytic|Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain|Methylmalonyl-CoA mutase, C-terminal|Methylmalonyl-CoA mutase, alpha chain, catalytic|Methylmalonyl-CoA mutase, alpha/beta chain, catalytic	GO:0003824|GO:0004494|GO:0008152|GO:0016853|GO:0016866|GO:0031419|GO:0046872	G3DSA:3.20.20.240|G3DSA:3.40.50.280|PF01642|PF02310|PS00544|PTHR23408|PTHR23408:SF1|SSF51703|SSF52242|TIGR00640|TIGR00641
ALIDE_RS11345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005129|IPR027417	P-loop containing nucleoside triphosphate hydrolase|SIMIBI class G3E GTPase, ArgK/MeaB	GO:0003924|GO:0005525	G3DSA:1.20.5.170|G3DSA:3.40.50.300|PF03308|PTHR23408|PTHR23408:SF17|SSF52540|TIGR00750
ALIDE_RS11350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000022|IPR029045	Carboxyl transferase|ClpP/crotonase-like domain		G3DSA:3.90.226.10|PF01039|PTHR22855|PTHR22855:SF40|SSF52096
ALIDE_RS11355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR001882|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin-binding site|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain|Rudiment single hybrid motif|Single hybrid motif	GO:0003824|GO:0005524	G3DSA:2.40.50.100|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF00364|PF02785|PF02786|PS00188|PS00866|PS00867|PTHR18866|SM00878|SSF51230|SSF51246|SSF52440|SSF56059
ALIDE_RS11360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase		G3DSA:3.10.180.10|PF13669|PTHR21366|PTHR21366:SF0|SSF54593
ALIDE_RS11365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002684|IPR006638|IPR007197|IPR010722|IPR013785|IPR024177	Aldolase-type TIM barrel|Biotin and thiamin synthesis-associated domain|Biotin synthase|Biotin synthase/Biotin biosynthesis bifunctional protein BioAB|Elongator protein 3/MiaB/NifB|Radical SAM	GO:0003824|GO:0004076|GO:0009102|GO:0051536	G3DSA:3.20.20.70|MF_01694|PF04055|PF06968|PIRSF001619|PTHR22976|PTHR22976:SF1|SM00729|SM00876|SSF102114|TIGR00433
ALIDE_RS11370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS11375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF578|SM00448|SM00862|SSF52172
ALIDE_RS11380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR004358|IPR013727	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|PTHR24423|PTHR24423:SF474|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS11385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF29|SSF53850
ALIDE_RS11390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003718|IPR015946	K homology domain-like, alpha/beta|OsmC/Ohr family		G3DSA:3.30.300.20|PF02566|SSF82784
ALIDE_RS11395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001763	Rhodanese-like domain		G3DSA:3.40.250.10|PF00581|PTHR12231|SM00450|SSF52821
ALIDE_RS11400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021309	Protein of unknown function DUF2892		PF11127
ALIDE_RS11405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023753	FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF07992|PTHR10632|PTHR10632:SF7|SSF51905
ALIDE_RS11410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023753	FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF07992|PTHR10632|PTHR10632:SF7|SSF51905
ALIDE_RS11415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423|IPR010130	Outer membrane efflux protein|Type I secretion outer membrane protein, TolC	GO:0005215|GO:0006810|GO:0019867	G3DSA:1.20.1600.10|PF02321|PTHR30026|PTHR30026:SF3|SSF56954
ALIDE_RS11420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR027463	Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0016020	G3DSA:1.10.3850.10|G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF16|SSF82693|SSF82714|SSF82866
ALIDE_RS11425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR032317	RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF16576|PTHR30469|PTHR30469:SF15|SSF111369|TIGR01730
ALIDE_RS11430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001845|IPR011991	HTH ArsR-type DNA-binding domain|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|PF01022|PR00778|PTHR33154|SM00418|SSF46785
ALIDE_RS11440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005000|IPR015813	HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824	G3DSA:3.20.20.60|PF03328|PTHR30502|SSF51621
ALIDE_RS11445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein		G3DSA:3.50.30.40|PF03737|SSF89562
ALIDE_RS11450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS11455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS11460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000843|IPR010982|IPR028082	Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I|Transcription regulator HTH, LacI	GO:0003677|GO:0003700|GO:0006355	G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PTHR30146|SM00354|SSF47413|SSF53822
ALIDE_RS11465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24321|PTHR24321:SF6|SM00822|SSF51735
ALIDE_RS11470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001692|IPR012131|IPR016161|IPR022695	Aldehyde/histidinol dehydrogenase|Histidinol dehydrogenase|Histidinol dehydrogenase, conserved site|Histidinol dehydrogenase, monofunctional	GO:0000105|GO:0004399|GO:0008152|GO:0008270|GO:0016491|GO:0051287|GO:0055114	G3DSA:3.40.50.1980|MF_01024|PF00815|PIRSF000099|PR00083|PS00611|PTHR21256|PTHR21256:SF11|SSF53720|TIGR00069
ALIDE_RS11475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013217|IPR029063	Methyltransferase type 12|S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF08242|SSF53335
ALIDE_RS11480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005636	DTW		PF03942|PTHR21392|SM01144
ALIDE_RS11485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003779|IPR004675|IPR010195|IPR029032	AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like|Uncharacterised peroxidase-related	GO:0051920|GO:0055114	G3DSA:1.20.1290.10|G3DSA:1.20.5.810|PF02627|PTHR35446|PTHR35446:SF2|SSF69118|TIGR00778|TIGR01926
ALIDE_RS11490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000917|IPR012549|IPR017849|IPR017850	Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|Domain of unknown function DUF1705|Sulfatase, N-terminal	GO:0003824|GO:0008152|GO:0008484|GO:0016021	G3DSA:3.40.720.10|PF00884|PF08019|PTHR30443|PTHR30443:SF0|SSF53649
ALIDE_RS11495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000326	Phosphatidic acid phosphatase type 2/haloperoxidase		PF01569|SSF48317
ALIDE_RS11500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF518|SM00448|SM00862|SSF52172
ALIDE_RS11505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	GO:0000155|GO:0007165	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PTHR24423|PTHR24423:SF474|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS11510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR018376|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|SSF52096
ALIDE_RS11515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS11520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR011032|IPR013149|IPR013154|IPR016040|IPR020843	Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PTHR11695|PTHR11695:SF31|SM00829|SSF50129|SSF51735
ALIDE_RS11525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS11530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00072|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS11540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS11545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR015893	DNA-binding HTH domain, TetR-type|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal	GO:0003677	G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|PTHR30055|PTHR30055:SF56|SSF46689|SSF48498
ALIDE_RS11550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007859|IPR023753	ETF-QO/FixX|FAD/NAD(P)-binding domain	GO:0016491|GO:0051536|GO:0055114	G3DSA:3.30.70.20|G3DSA:3.50.50.60|PF05187|PF13450|PR00420|PTHR10617|PTHR10617:SF107|SSF51905|SSF54373|SSF54862
ALIDE_RS11555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007487|IPR028082	ABC transporter, substrate-binding protein|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF04392|PTHR35271|SSF53822
ALIDE_RS11560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR32196|PTHR32196:SF27
ALIDE_RS11565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF534|SM00382|SSF52540
ALIDE_RS11570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002078|IPR002197|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417|IPR029016	AAA+ ATPase domain|DNA binding HTH domain,  Fis-type|GAF domain-like|Homeodomain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site	GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.20|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF02954|PR01590|PS00675|PS00676|PS00688|PTHR32071|PTHR32071:SF5|SM00382|SSF46689|SSF52540|SSF55781
ALIDE_RS11575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1		G3DSA:3.40.50.1820|PF12697|PR00111|PTHR10992|PTHR10992:SF768|SSF53474
ALIDE_RS11580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000172|IPR007867|IPR023753	FAD/NAD(P)-binding domain|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal	GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.50.50.60|PF00732|PF05199|PTHR11552|PTHR11552:SF139|SSF51905|SSF54373
ALIDE_RS11590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:3.90.1550.10|PTHR12561|PTHR12561:SF7|SSF55681
ALIDE_RS11595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001078|IPR023213	2-oxoacid dehydrogenase acyltransferase, catalytic domain|Chloramphenicol acetyltransferase-like domain	GO:0008152|GO:0016746	G3DSA:3.30.559.10|PF00198|PTHR23151|SSF52777
ALIDE_RS11600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR003016|IPR011053	2-oxo acid dehydrogenase, lipoyl-binding site|Biotin/lipoyl attachment|Single hybrid motif		G3DSA:2.40.50.100|PF00364|PS00189|SSF51230
ALIDE_RS11605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005475|IPR009014|IPR029061|IPR033247|IPR033248	Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase family|Transketolase, C-terminal domain|Transketolase-like, pyrimidine-binding domain	GO:0003824|GO:0008152	G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF02779|PF02780|PTHR11624|PTHR11624:SF77|SM00861|SSF52518|SSF52922
ALIDE_RS11610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001017|IPR029061	Dehydrogenase, E1 component|Thiamin diphosphate-binding fold	GO:0008152|GO:0016624	G3DSA:3.40.50.970|PF00676|PTHR11516|PTHR11516:SF25|SSF52518
ALIDE_RS11615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000485|IPR011008|IPR011991|IPR019885|IPR019887|IPR019888	AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator HTH, AsnC-type, conserved site|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0005622|GO:0006355|GO:0043565	G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13404|PR00033|PS00519|PTHR30154|PTHR30154:SF28|SM00344|SSF46785|SSF54909
ALIDE_RS11620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004682|IPR018389	TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family	GO:0006810|GO:0030288	PF03480|PIRSF006470|PTHR33376|PTHR33376:SF2|SSF53850|TIGR00787
ALIDE_RS11625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007387	Tripartite ATP-independent periplasmic transporter, DctQ component		PF04290|PTHR35011
ALIDE_RS11630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004681|IPR010656	TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter permease protein	GO:0016021	PF06808|PIRSF006066|PTHR33362|PTHR33362:SF2|TIGR00786
ALIDE_RS11635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001279	Metallo-beta-lactamase		G3DSA:3.60.15.10|PF00753|PTHR11935|PTHR11935:SF109|SM00849|SSF56281
ALIDE_RS11640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006222|IPR006223|IPR013977|IPR027266|IPR028896|IPR029043	Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA|GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1|Glycine cleavage T-protein, C-terminal barrel domain|Glycine cleavage T-protein-like, N-terminal|Glycine cleavage T-protein/YgfZ, C-terminal domain|Glycine cleavage system T protein	GO:0004047|GO:0005515|GO:0006546	G3DSA:2.40.30.110|G3DSA:3.30.1360.120|G3DSA:3.30.70.1400|PF01571|PF08669|PIRSF006487|PTHR13847|PTHR13847:SF209|SSF101790|SSF103025|TIGR00528
ALIDE_RS11645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002930|IPR003016|IPR011053|IPR017453	2-oxo acid dehydrogenase, lipoyl-binding site|Glycine cleavage system H-protein|Glycine cleavage system H-protein, subgroup|Single hybrid motif	GO:0005960|GO:0019464	G3DSA:2.40.50.100|MF_00272|PF01597|PS00189|PTHR11715|SSF51230|TIGR00527
ALIDE_RS11650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003437|IPR015421|IPR015424|IPR020580|IPR020581	Glycine cleavage system P protein|Glycine cleavage system P-protein, N-terminal|Glycine dehydrogenase (decarboxylating)|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1	GO:0003824|GO:0004375|GO:0006544|GO:0006546|GO:0055114	G3DSA:3.40.640.10|MF_00711|PF02347|PTHR11773|PTHR11773:SF1|SSF53383|TIGR00461
ALIDE_RS11655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003735|IPR015893	Metal-sensitive transcriptional repressor|Tetracycline transcriptional regulator, TetR-like, C-terminal	GO:0003677|GO:0006355|GO:0046872	G3DSA:1.10.357.10|PF02583|PTHR33677
ALIDE_RS11660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR002328|IPR011032|IPR013149|IPR013154|IPR014183|IPR016040|IPR020843	Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase|Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain	GO:0006069|GO:0008270|GO:0016491|GO:0051903|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS00059|PTHR11695|PTHR11695:SF560|SM00829|SSF50129|SSF51735|TIGR02818
ALIDE_RS11665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000801|IPR014186|IPR029058	Alpha/Beta hydrolase fold|Putative esterase|S-formylglutathione hydrolase	GO:0018738|GO:0046294	G3DSA:3.40.50.1820|PF00756|PTHR10061|SSF53474|TIGR02821
ALIDE_RS11675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30126|SSF46785|SSF53850
ALIDE_RS11680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007197|IPR013785	Aldolase-type TIM barrel|Radical SAM	GO:0003824|GO:0051536	G3DSA:3.20.20.70|PF04055|PTHR11228|PTHR11228:SF26|SSF102114
ALIDE_RS11685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001437|IPR029462	Regulator of nucleoside diphosphate kinase, N-terminal domain|Transcription elongation factor, GreA/GreB, C-terminal	GO:0003677|GO:0032784	G3DSA:1.10.286.20|G3DSA:3.10.50.30|PF01272|PF14760|PTHR30437|PTHR30437:SF5|SSF54534
ALIDE_RS11690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002656	Acyltransferase 3	GO:0016747	PF01757
ALIDE_RS11695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004136|IPR013785	Aldolase-type TIM barrel|Nitronate monooxygenase	GO:0003824|GO:0018580|GO:0055114	G3DSA:3.20.20.70|PF03060|PTHR32332|PTHR32332:SF21|SSF51412
ALIDE_RS11700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786|IPR020953|IPR025878	Acetyl-CoA dehydrogenase-like C-terminal domain|Acyl-CoA dehydrogenase, N-terminal, bacteria|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PF12418|PF12806|PTHR10909|PTHR10909:SF296|SSF47203|SSF56645
ALIDE_RS11705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035	DHS-like NAD/FAD-binding domain|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold	GO:0009055|GO:0050660	G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|PTHR10909|PTHR10909:SF294|SM00893|SSF52402|SSF52467
ALIDE_RS11710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000049|IPR012255|IPR014729|IPR014730	Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold	GO:0009055	G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|PTHR21294|PTHR21294:SF8|SM00893|SSF52402
ALIDE_RS11715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|PTHR11941:SF28|SSF52096
ALIDE_RS11720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000286|IPR023801	Histone deacetylase domain|Histone deacetylase superfamily		G3DSA:3.40.800.20|PF00850|PR01270|PTHR10625|PTHR10625:SF104|SSF52768
ALIDE_RS11725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR011703|IPR016366|IPR027417	AAA+ ATPase domain|ATPase chaperone, AAA-type, MoxR, predicted|ATPase, AAA-3|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:1.10.8.300|G3DSA:3.40.50.300|PF07726|PIRSF002849|PTHR11603|PTHR11603:SF155|SM00382|SSF52540
ALIDE_RS11730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002881	Domain of unknown function DUF58		PF01882|PTHR34351|PTHR34351:SF1
ALIDE_RS11735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002931|IPR021878	Protein of unknown function DUF3488|Transglutaminase-like		G3DSA:3.90.260.10|PF01841|PF11992|PTHR33490|PTHR33490:SF4|SM00460|SSF54001
ALIDE_RS11740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011757|IPR023346|IPR031304	Lysozyme-like domain|Lytic transglycosylase MltB|Transglycosylase SLT domain 2		G3DSA:1.10.530.10|PF13406|PTHR30163|PTHR30163:SF0|SSF53955|TIGR02282
ALIDE_RS11745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005475|IPR009014|IPR029061|IPR033247|IPR033248	Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase family|Transketolase, C-terminal domain|Transketolase-like, pyrimidine-binding domain	GO:0003824|GO:0008152	G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF02779|PF02780|PTHR11624|PTHR11624:SF2|SM00861|SSF52518|SSF52922
ALIDE_RS11750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005474|IPR029061|IPR033247	Thiamin diphosphate-binding fold|Transketolase family|Transketolase, N-terminal		G3DSA:3.40.50.970|PF00456|PTHR11624|PTHR11624:SF86|SSF52518
ALIDE_RS11755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004681|IPR010656	TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter permease protein	GO:0016021	PF06808|PIRSF006066|PTHR33362|PTHR33362:SF2|TIGR00786
ALIDE_RS11760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007387	Tripartite ATP-independent periplasmic transporter, DctQ component		PF04290
ALIDE_RS11765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004682|IPR018389	TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family	GO:0006810|GO:0030288	PF03480|PIRSF006470|PTHR33376|PTHR33376:SF4|TIGR00787
ALIDE_RS11770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24322|SM00822|SSF51735
ALIDE_RS11775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30537|PTHR30537:SF8|SSF46785|SSF53850
ALIDE_RS11780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005474|IPR005475|IPR005478|IPR009014|IPR029061|IPR033247|IPR033248	Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase family|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase, bacterial-like|Transketolase-like, pyrimidine-binding domain	GO:0003824|GO:0004802|GO:0008152	G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PF02779|PF02780|PTHR11624|PTHR11624:SF1|SM00861|SSF52518|SSF52922|TIGR00232
ALIDE_RS11785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006139|IPR006140|IPR016040	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain	GO:0008152|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF00389|PF02826|PTHR10996|PTHR10996:SF91|SSF51735|SSF52283
ALIDE_RS11790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|PTHR30126:SF36|SSF46785|SSF53850
ALIDE_RS11795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004630|IPR018383	Uncharacterised protein family UPF0324, bacteria|Uncharacterised protein family UPF0324, prokaryote	GO:0016021	PF03601|PTHR30106|PTHR30106:SF2|TIGR00698
ALIDE_RS11800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|SSF53822
ALIDE_RS11805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018718	Protein of unknown function DUF2242		PF10001
ALIDE_RS11810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003838|IPR025857	ABC transporter permease protein domain|MacB-like periplasmic core domain	GO:0016020	PF02687|PF12704|PTHR30572|PTHR30572:SF9
ALIDE_RS11815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF578|SM00382|SSF52540
ALIDE_RS11820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR032317	RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF16576|PTHR30572|PTHR30572:SF1|SSF111369|TIGR01730
ALIDE_RS11825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423|IPR010131	Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT	GO:0005215|GO:0006810|GO:0008289|GO:0016020	G3DSA:1.20.1600.10|PF02321|PTHR30203|PTHR30203:SF3|SSF56954|TIGR01845
ALIDE_RS11830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000905|IPR017860|IPR017861|IPR022450	Gcp-like domain|Kae1/TsaD family|Peptidase M22, conserved site|tRNA N6-adenosine threonylcarbamoyltransferase, TsaD	GO:0002949|GO:0004222	G3DSA:3.30.420.40|MF_01445|PF00814|PR00789|PS01016|PTHR11735|PTHR11735:SF6|SSF53067|TIGR00329|TIGR03723
ALIDE_RS11835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644	CBS domain		G3DSA:3.10.580.10|PF00571|PTHR11911|SM00116|SSF54631
ALIDE_RS11840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009282|IPR018247	EF-Hand 1, calcium-binding site|Protein of unknown function DUF937		PF06078|PS00018
ALIDE_RS11845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143	RND efflux pump, membrane fusion protein	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF13533|PTHR30158|PTHR30158:SF3|SSF111369|TIGR01730
ALIDE_RS11850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR004764|IPR027463	Acriflavin resistance protein|Hydrophobe/amphiphile efflux-1 HAE1|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3850.10|G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF13|SSF82693|SSF82714|SSF82866|TIGR00915
ALIDE_RS11855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423|IPR010131	Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT	GO:0005215|GO:0006810|GO:0008289|GO:0016020	G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|PTHR30203|PTHR30203:SF15|SSF56954|TIGR01845
ALIDE_RS11860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005117|IPR006066|IPR006067|IPR007419|IPR012744|IPR017121|IPR023753	BFD-like [2Fe-2S]-binding domain|FAD/NAD(P)-binding domain|Nitrite reductase [NAD(P)H] large subunit, NirB|Nitrite reductase [NAD(P)H], large subunit|Nitrite/Sulfite reductase ferredoxin-like domain|Nitrite/sulphite reductase 4Fe-4S domain|Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site	GO:0008942|GO:0016491|GO:0020037|GO:0042128|GO:0050660|GO:0050661|GO:0051536|GO:0055114	G3DSA:3.30.413.10|G3DSA:3.50.50.60|PF01077|PF03460|PF04324|PF07992|PIRSF037149|PR00368|PR00397|PR00411|PS00365|PTHR22912|PTHR22912:SF1|SSF51905|SSF55124|SSF56014|TIGR02374
ALIDE_RS11865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012748|IPR017941	Nitrite reductase [NAD(P)H] small subunit, NirD|Rieske [2Fe-2S] iron-sulphur domain	GO:0008942|GO:0016491|GO:0042128|GO:0051537|GO:0055114	G3DSA:2.102.10.10|PF00355|PTHR21496|SSF50022|TIGR02378
ALIDE_RS11870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006656|IPR006657|IPR006963|IPR007419|IPR009010	Aspartate decarboxylase-like domain|BFD-like [2Fe-2S]-binding domain|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain	GO:0016491|GO:0030151|GO:0055114	G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF04324|PF04879|PTHR11615|PTHR11615:SF119|SM00926|SSF50692|SSF53706
ALIDE_RS11875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23515|PTHR23515:SF4|SSF103473
ALIDE_RS11880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032816|IPR032818	DedA family|SNARE associated Golgi protein		PF09335|PTHR30353|PTHR30353:SF8
ALIDE_RS11885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000312|IPR017459	Glycosyl transferase family 3, N-terminal domain|Glycosyl transferase, family 3	GO:0008152|GO:0016757	G3DSA:1.20.970.10|G3DSA:3.40.1030.10|PF02885|SSF47648|SSF52418
ALIDE_RS11890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000878|IPR003043|IPR006366|IPR014776|IPR014777	Tetrapyrrole methylase|Tetrapyrrole methylase, subdomain 1|Tetrapyrrole methylase, subdomain 2|Uroporphiryn-III C-methyltransferase, conserved site|Uroporphyrin-III C-methyltransferase	GO:0006779|GO:0008152|GO:0008168|GO:0055114	G3DSA:3.30.950.10|G3DSA:3.40.1010.10|PF00590|PS00839|PS00840|PTHR21091|PTHR21091:SF16|SSF53790|TIGR01469
ALIDE_RS11895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006683|IPR029069	HotDog domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR11049|SSF54637
ALIDE_RS11900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004792|IPR023166|IPR023753	Conserved hypothetical protein CHP00275, flavoprotein HI0933-like|FAD/NAD(P)-binding domain|HI0933 insert-like domain	GO:0016491|GO:0055114	G3DSA:1.10.8.260|G3DSA:2.40.30.10|G3DSA:3.50.50.60|PF03486|PR00411|PTHR10617|PTHR10617:SF103|SSF160996|SSF51905|TIGR00275
ALIDE_RS11905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010266	NnrS		PF05940
ALIDE_RS11910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018720	Domain of unknown function DUF2249		PF10006
ALIDE_RS11915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS11920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR025110	AMP-binding enzyme C-terminal domain|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PTHR24096|SSF56801
ALIDE_RS11925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|PTHR10909|PTHR10909:SF241|SSF47203|SSF56645
ALIDE_RS11930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS11935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004099|IPR006258|IPR012999|IPR016156|IPR023753	Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD-linked reductase, dimerisation domain|Pyridine nucleotide-disulphide oxidoreductase, class I, active site|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	GO:0004148|GO:0016491|GO:0016668|GO:0045454|GO:0050660|GO:0055114	G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PS00076|PTHR22912|PTHR22912:SF125|SSF51905|SSF55424|TIGR01350
ALIDE_RS11940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR001078|IPR003016|IPR004167|IPR011053|IPR023213	2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain|E3-binding domain|Single hybrid motif	GO:0008152|GO:0016746	G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|PTHR23151|SSF47005|SSF51230|SSF52777
ALIDE_RS11945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR014748|IPR029045	ClpP/crotonase-like domain|Crontonase, C-terminal|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PTHR11941|SSF52096
ALIDE_RS11950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005475|IPR009014|IPR029061|IPR033247|IPR033248	Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase family|Transketolase, C-terminal domain|Transketolase-like, pyrimidine-binding domain	GO:0003824|GO:0008152	G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF02779|PF02780|PTHR11624|SM00861|SSF52518|SSF52922
ALIDE_RS11955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001017|IPR029061	Dehydrogenase, E1 component|Thiamin diphosphate-binding fold	GO:0008152|GO:0016624	G3DSA:3.40.50.970|PF00676|PTHR11516|SSF52518
ALIDE_RS11960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PTHR13078|SSF54637
ALIDE_RS11965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029069	HotDog domain		G3DSA:3.10.129.10|SSF54637
ALIDE_RS11970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002878|IPR012340|IPR022002	Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold		PF01796|PF12172|PTHR34075|PTHR34075:SF2|SSF50249
ALIDE_RS11975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020616	Thiolase|Thiolase, N-terminal|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PIRSF000429|PTHR18919|PTHR18919:SF108|SSF53901
ALIDE_RS11980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PTHR10909|SSF47203|SSF56645
ALIDE_RS11985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003781|IPR013816|IPR016040|IPR016102|IPR032875	ATP-grasp fold, subdomain 2|CoA-binding|NAD(P)-binding domain|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain	GO:0005524|GO:0048037	G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|PTHR33303|PTHR33303:SF3|SM00881|SSF51735|SSF52210|SSF56059
ALIDE_RS11990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF7|SM00346|SSF46785|SSF55781
ALIDE_RS11995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002744|IPR017776	Domain of unknown function DUF59|FeS assembly SUF system protein SufT, putative		PF01883|PTHR13696|PTHR13696:SF62|SSF117916|TIGR03406
ALIDE_RS12000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002871	NIF system FeS cluster assembly, NifU, N-terminal	GO:0005506|GO:0016226|GO:0051536	G3DSA:3.90.1010.10|PF01592|PTHR10093|SSF82649|TIGR01994
ALIDE_RS12005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000192|IPR010970|IPR015421|IPR015422|IPR015424|IPR016454|IPR020578	Aminotransferase class V domain|Aminotransferase class-V, pyridoxal-phosphate binding site|Cysteine desulfurase|Cysteine desulfurase, SufS|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0006534|GO:0030170|GO:0031071	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00266|PIRSF005572|PS00595|PTHR11601|PTHR11601:SF17|SSF53383|TIGR01979
ALIDE_RS12010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000825	SUF system FeS cluster assembly, SufBD	GO:0016226	PF01458|PTHR30508|PTHR30508:SF0|SSF101960
ALIDE_RS12015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR010230|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|FeS cluster assembly SUF system, ATPase SufC|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0006810|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF85|SM00382|SSF52540|TIGR01978
ALIDE_RS12020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000825|IPR010231	SUF system FeS cluster assembly, SufB|SUF system FeS cluster assembly, SufBD	GO:0016226	PF01458|PTHR30508|PTHR30508:SF1|SSF101960|TIGR01980
ALIDE_RS12025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001911|IPR018278	Ribosomal protein S21|Ribosomal protein S21, conserved site	GO:0003735|GO:0005622|GO:0005840|GO:0006412	MF_00358|PD005521|PF01165|PR00976|PS01181|PTHR21109|TIGR00030
ALIDE_RS12030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003789|IPR019004|IPR023168	Aspartyl/glutamyl-tRNA amidotransferase subunit B-related|Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal|Uncharacterised domain YOR215C, mitochondrial	GO:0016884	G3DSA:1.10.10.410|G3DSA:1.10.1510.10|PF09424|PTHR28055|PTHR28055:SF1|SSF89095
ALIDE_RS12035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006674	HD domain		G3DSA:1.10.3210.10|PF13487|SSF109604
ALIDE_RS12040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004165|IPR012791	3-oxoacid CoA-transferase, subunit B|Coenzyme A transferase family I	GO:0008152|GO:0008410	G3DSA:3.40.810.20|PF01144|PTHR13707|SM00882|SSF100950|TIGR02428
ALIDE_RS12045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004163|IPR004165|IPR012792	3-oxoacid CoA-transferase, subunit A|Coenzyme A transferase binding site|Coenzyme A transferase family I	GO:0008152|GO:0008410	G3DSA:3.40.1080.10|PF01144|PS01273|PTHR13707|SM00882|SSF100950|TIGR02429
ALIDE_RS12050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000792|IPR011991|IPR016032	PAS domain|Signal transduction response regulator, C-terminal effector|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.20|PF00196|PF13426|PR00038|PS00622|PTHR26402|PTHR26402:SF599|SM00091|SM00421|SSF46894|SSF55785|TIGR00229
ALIDE_RS12055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002656	Acyltransferase 3	GO:0016747	PF01757|PTHR23028|PTHR23028:SF53
ALIDE_RS12060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR001048|IPR010167|IPR016181	Acyl-CoA N-acyltransferase|Amino-acid N-acetyltransferase (ArgA)|Aspartate/glutamate/uridylate kinase|GNAT domain	GO:0004042|GO:0005737|GO:0006526|GO:0008080	G3DSA:3.40.1160.10|G3DSA:3.40.630.30|MF_01105|PF00583|PF00696|PIRSF000423|PTHR30602|SSF53633|SSF55729|TIGR01890
ALIDE_RS12065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006175|IPR013813|IPR019897	Endoribonuclease L-PSP/chorismate mutase-like|RidA, conserved site|YjgF/YER057c/UK114 family		G3DSA:3.30.1330.40|PF01042|PS01094|PTHR11803|SSF55298
ALIDE_RS12070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR023753	FAD dependent oxidoreductase|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|PTHR13847|PTHR13847:SF148|SSF51905|SSF54373
ALIDE_RS12075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015942|IPR026286	Asp/Glu/hydantoin racemase|Maleate isomerase/Arylmalonate decarboxylase	GO:0006807|GO:0036361	PF01177|PIRSF015736|PTHR40267
ALIDE_RS12080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000709|IPR028081|IPR028082	Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I	GO:0006865	G3DSA:3.40.50.2300|PF13458|PR00337|PTHR30483|SSF53822
ALIDE_RS12085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795
ALIDE_RS12090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482
ALIDE_RS12095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF358|SM00382|SSF52540
ALIDE_RS12100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417	AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS12105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|SSF53822
ALIDE_RS12110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002220|IPR005263|IPR013785|IPR020625	4-hydroxy-tetrahydrodipicolinate synthase, DapA|Aldolase-type TIM barrel|DapA-like|Schiff base-forming aldolase, active site	GO:0003824|GO:0008152|GO:0008840|GO:0009089|GO:0016829	G3DSA:3.20.20.70|MF_00418|PF00701|PIRSF001365|PR00146|PS00666|PTHR12128|PTHR12128:SF34|SM01130|SSF51569|TIGR00674
ALIDE_RS12115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002869|IPR009014|IPR011766|IPR019752|IPR029061	Pyruvate-flavodoxin oxidoreductase, central domain|Pyruvate/ketoisovalerate oxidoreductase, catalytic domain|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	GO:0003824|GO:0008152|GO:0016491|GO:0016903|GO:0030976|GO:0055114	G3DSA:3.40.50.970|G3DSA:3.40.920.10|PF01558|PF02775|PTHR18968|PTHR18968:SF134|SSF52518|SSF52922|SSF53323
ALIDE_RS12120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|PTHR11751|PTHR11751:SF395|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS12125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003018|IPR003607|IPR006674|IPR029016	GAF domain|GAF domain-like|HD domain|HD/PDEase domain	GO:0005515	G3DSA:1.10.3210.10|G3DSA:3.30.450.40|PF01590|PF01966|PF13487|PTHR11347|PTHR11347:SF82|SM00065|SM00471|SSF109604|SSF55781
ALIDE_RS12130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003752|IPR022920|IPR023380	Disulphide bond formation protein DsbB|Disulphide bond formation protein DsbB-like domain|Disulphide bond formation protein DsbB/BdbC	GO:0015035|GO:0016020	G3DSA:1.20.1550.10|MF_00286|PF02600|PTHR36570|SSF158442
ALIDE_RS12135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR005666|IPR008995|IPR017871|IPR024765|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Sulphate transport system permease protein 1|TOBE-like domain	GO:0005524|GO:0006810|GO:0016020|GO:0016887|GO:0042626	G3DSA:3.40.50.300|PF00005|PF12857|PS00211|PTHR24220|PTHR24220:SF123|SM00382|SSF50331|SSF52540|TIGR00968
ALIDE_RS12140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR005667|IPR011866	ABC transporter type 1, transmembrane domain MetI-like|Sulphate ABC transporter permease protein 2|Sulphate ABC transporter, permease protein CysW	GO:0006810|GO:0008272|GO:0015116|GO:0015419|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30406|PTHR30406:SF1|SSF161098|TIGR00969|TIGR02140
ALIDE_RS12145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR005667|IPR011865	ABC transporter type 1, transmembrane domain MetI-like|Sulphate ABC transporter permease protein 2|Sulphate ABC transporter, permease protein CysT	GO:0006810|GO:0008272|GO:0015116|GO:0015419|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30406|PTHR30406:SF6|SSF161098|TIGR00969|TIGR02139
ALIDE_RS12150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005669|IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup|Thiosulphate/Sulfate-binding protein	GO:0008272|GO:0015419	G3DSA:3.30.230.10|G3DSA:3.40.190.10|PF13531|PTHR30368|PTHR30368:SF2|SSF53850|TIGR00971
ALIDE_RS12155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010662|IPR029058	Alpha/Beta hydrolase fold|Putative hydrolase RBBP9/YdeN	GO:0016787	G3DSA:3.40.50.1820|PF06821|SSF53474
ALIDE_RS12160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF29|SSF46785|SSF53850
ALIDE_RS12165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003680|IPR023048|IPR029039	Flavodoxin-like fold|Flavoprotein-like domain|NADH-azoreductase, FMN-dependent	GO:0016661|GO:0055114	G3DSA:3.40.50.360|MF_01216|PF02525|PTHR10204|PTHR10204:SF37|SSF52218
ALIDE_RS12170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005025|IPR029039	Flavoprotein-like domain|NADPH-dependent FMN reductase-like	GO:0016491	G3DSA:3.40.50.360|PF03358|PTHR30543|PTHR30543:SF6|SSF52218
ALIDE_RS12175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004872	Lipoprotein NlpA family		G3DSA:3.40.190.10|PF03180|PIRSF002854|PTHR30429|SSF53850|TIGR00363
ALIDE_RS12180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30450|PTHR30450:SF1|SSF161098
ALIDE_RS12185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR018449|IPR026253|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Methionine import ATP-binding protein MetN|NIL domain|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0015821|GO:0016887|GO:0042626	G3DSA:3.30.70.260|G3DSA:3.40.50.300|PF00005|PF09383|PS00211|PTHR24220|PTHR24220:SF455|SM00382|SM00930|SSF52540|SSF55021
ALIDE_RS12190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001129|IPR023352	Membrane associated eicosanoid/glutathione metabolism-like domain|Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein		G3DSA:1.20.120.550|PF01124|PTHR35371|PTHR35371:SF1|SSF161084
ALIDE_RS12195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000093|IPR006171|IPR023627|IPR023628	DNA recombination protein RecR|Recombination protein RecR|Recombination protein RecR, C4-type zinc finger|Toprim domain	GO:0003677|GO:0006281|GO:0006310	MF_00017|PF02132|PF13662|PTHR30446|PTHR30446:SF0|SM00493|SSF111304|TIGR00615
ALIDE_RS12200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004401	Nucleoid-associated protein YbaB/EbfC family		G3DSA:3.30.1310.10|MF_00274|PF02575|PIRSF004555|PTHR33449|PTHR33449:SF1|SSF82607|TIGR00103
ALIDE_RS12205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR008921|IPR012763|IPR021029|IPR022754|IPR027417	AAA+ ATPase domain|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|DNA polymerase III, gamma subunit, domain III|DNA polymerase III, subunit gamma/ tau|DNA polymerase III, tau subunit, domain V|P-loop containing nucleoside triphosphate hydrolase	GO:0003677|GO:0003887|GO:0005524|GO:0006260|GO:0009360	G3DSA:1.10.8.60|G3DSA:1.20.272.10|G3DSA:3.40.50.300|PF12169|PF12170|PF13177|PTHR11669|PTHR11669:SF0|SM00382|SSF48019|SSF52540|TIGR02397
ALIDE_RS12210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR003725|IPR004606|IPR005116|IPR008995|IPR011991|IPR016462	Molybdate-dependent transcriptional regulator ModE|Molybdate/tungstate binding, C-terminal|Molybdenum-binding protein ModE, N-terminal|Molybdenum-pterin binding|Transcription regulator HTH, LysR|Transport-associated OB, type 1|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355|GO:0006810|GO:0015689|GO:0030151	G3DSA:1.10.10.10|G3DSA:2.40.50.100|PF00126|PF03459|PIRSF005763|PTHR30432|SSF46785|SSF50331|TIGR00637|TIGR00638
ALIDE_RS12215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002638|IPR006242|IPR013785|IPR022412|IPR027277	Aldolase-type TIM barrel|Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD|Putative pyrophosphorylase ModD|Quinolinate phosphoribosyl transferase, C-terminal|Quinolinate phosphoribosyl transferase, N-terminal	GO:0003824|GO:0004514|GO:0009435|GO:0016763	G3DSA:3.20.20.70|G3DSA:3.90.1170.20|PF01729|PF02749|PIRSF006250|PTHR11948|PTHR11948:SF1|SSF51690|SSF54675|TIGR01334
ALIDE_RS12220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR011867	ABC transporter type 1, transmembrane domain MetI-like|Molybdate ABC transporter, permease protein	GO:0006810|GO:0015098|GO:0015689|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30183|SSF161098|TIGR02141
ALIDE_RS12225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005950	Molybdenum ABC transporter, periplasmic binding protein	GO:0015412|GO:0015689|GO:0030288	G3DSA:3.40.190.10|PF13531|PTHR30632|SSF53850|TIGR01256
ALIDE_RS12235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002559|IPR008490	Transposase InsH, N-terminal|Transposase, IS4-like	GO:0003677|GO:0004803|GO:0006313	PF01609|PF05598
ALIDE_RS12240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025251	Domain of unknown function DUF4213		PF13938|SSF159713
ALIDE_RS12245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF13649|PTHR10108|PTHR10108:SF849|SSF53335
ALIDE_RS12250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF582|SM00382|SSF52540
ALIDE_RS12255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000522|IPR029022	ABC transporter, BtuC-like|ABC transporter, permease protein	GO:0005215|GO:0016020	G3DSA:1.10.3470.10|PF01032|PTHR30472|PTHR30472:SF34|SSF81345
ALIDE_RS12260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002491	ABC transporter periplasmic binding domain	GO:0005488	G3DSA:3.40.50.1980|PF01497|PTHR30535|SSF53807
ALIDE_RS12265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018912	Protein of unknown function DUF2478		PF10649
ALIDE_RS12270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR012910	TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain	GO:0004872|GO:0006810|GO:0016020	G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PTHR32552|SSF56935
ALIDE_RS12280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022460|IPR023753	Conserved hyptotheical protein CHP03862, flavoprotein, PP4765|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF03486|PR00411|PTHR10617|PTHR10617:SF103|SSF160996|SSF51905|TIGR03862
ALIDE_RS12285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003829|IPR008778|IPR011051|IPR012093|IPR014710	Pirin|Pirin, C-terminal domain|Pirin, N-terminal domain|RmlC-like cupin domain|RmlC-like jelly roll fold		G3DSA:2.60.120.10|PF02678|PF05726|PIRSF006232|PTHR13903|PTHR13903:SF12|SSF51182
ALIDE_RS12290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003829|IPR008778|IPR011051|IPR012093|IPR014710	Pirin|Pirin, C-terminal domain|Pirin, N-terminal domain|RmlC-like cupin domain|RmlC-like jelly roll fold		G3DSA:2.60.120.10|PF02678|PF05726|PIRSF006232|PTHR13903|PTHR13903:SF4|SSF51182
ALIDE_RS12295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000212|IPR014016|IPR014017|IPR027417	DNA helicase, UvrD/REP type|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD-like Helicase, ATP-binding domain	GO:0003677|GO:0004003|GO:0005524|GO:0016787	G3DSA:1.10.486.10|G3DSA:3.40.50.300|PF00580|PF12705|PF13361|PTHR11070|SSF52540
ALIDE_RS12300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027417	P-loop containing nucleoside triphosphate hydrolase		PF12705|SSF52540
ALIDE_RS12305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005746|IPR012336|IPR013766|IPR017937	Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like fold	GO:0006662|GO:0015035|GO:0045454	G3DSA:3.40.30.10|PF00085|PIRSF000077|PR00421|PS00194|PTHR10438|SSF52833|TIGR01068
ALIDE_RS12310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000194|IPR003593|IPR004665|IPR011112|IPR011113|IPR011129|IPR012340|IPR027417	AAA+ ATPase domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|Cold shock protein|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|Rho termination factor, N-terminal|Rho termination factor, RNA-binding|Transcription termination factor Rho	GO:0003676|GO:0003723|GO:0005524|GO:0006353|GO:0008186	G3DSA:1.10.720.10|G3DSA:2.40.50.140|G3DSA:3.40.50.300|MF_01884|PF00006|PF07497|PF07498|PTHR15184|PTHR15184:SF34|SM00357|SM00382|SM00959|SSF50249|SSF52540|SSF68912|TIGR00767
ALIDE_RS12315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002150	Ribosomal protein L31	GO:0003735|GO:0005622|GO:0005840|GO:0006412	PF01197|PR01249|PS01143|PTHR33280|PTHR33280:SF2|SSF143800|TIGR00105
ALIDE_RS12325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002528	Multi antimicrobial extrusion protein	GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085	PF01554|PTHR11206|PTHR11206:SF153|TIGR00797
ALIDE_RS12330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR003594|IPR003661|IPR004358|IPR014310|IPR021766	Histidine kinase-like ATPase, C-terminal domain|PAS domain|Protein of unknown function DUF3329|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, phosphate regulon sensor PhoR|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0000160|GO:0004673|GO:0007165|GO:0016021|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF11808|PF13188|PR00344|PTHR24423|PTHR24423:SF554|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR02966
ALIDE_RS12335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011879|IPR011991|IPR016032	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000156|GO:0000160|GO:0003677|GO:0006355|GO:0006817	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF576|SM00448|SM00862|SSF46894|SSF52172|TIGR02154
ALIDE_RS12340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR026022|IPR028366	PhoU domain|Phosphate transport system protein PhoU	GO:0005737|GO:0030643|GO:0045936	G3DSA:1.20.58.220|PF01895|PIRSF003107|PTHR10010|PTHR10010:SF14|SSF109755|TIGR02135
ALIDE_RS12345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR005670|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase|Phosphate transport system permease protein 1	GO:0005315|GO:0005524|GO:0016020|GO:0016887|GO:0035435	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF560|SM00382|SSF52540|TIGR00972
ALIDE_RS12350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR005672	ABC transporter type 1, transmembrane domain MetI-like|Phosphate transport system permease protein PstA	GO:0005315|GO:0005887|GO:0006810|GO:0016020|GO:0035435	G3DSA:1.10.3720.10|PF00528|PTHR30425|PTHR30425:SF0|SSF161098|TIGR00974
ALIDE_RS12355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR011864	ABC transporter type 1, transmembrane domain MetI-like|Phosphate ABC transporter, permease protein PstC	GO:0005315|GO:0006810|GO:0006817|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30425|PTHR30425:SF1|SSF161098|TIGR02138
ALIDE_RS12360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005673|IPR024370	ABC transporter, phosphate-binding protein PstS|PBP domain	GO:0035435|GO:0042301|GO:0043190	G3DSA:3.40.190.10|PF12849|PIRSF002756|PTHR30570|PTHR30570:SF0|SSF53850|TIGR00975
ALIDE_RS12365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003695|IPR006674|IPR030673	HD domain|Ppx/GppA phosphatase|Pyrophosphatase, GppA/Ppx-type		G3DSA:1.10.3210.10|G3DSA:3.30.420.150|G3DSA:3.30.420.40|PF02541|PIRSF001267|PTHR30005|PTHR30005:SF4|SSF109604|SSF53067
ALIDE_RS12370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013078|IPR029033	Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1		G3DSA:3.40.50.1240|PF00300|SM00855|SSF53254
ALIDE_RS12375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003414|IPR024953|IPR025198|IPR025200	Polyphosphate kinase|Polyphosphate kinase C-terminal domain|Polyphosphate kinase N-terminal domain|Polyphosphate kinase middle domain	GO:0006799|GO:0008976|GO:0009358	G3DSA:3.30.1840.10|G3DSA:3.30.870.10|MF_00347|PF02503|PF13089|PF13090|PIRSF015589|PTHR30218|PTHR30218:SF0|SSF140356|SSF143724|SSF56024|TIGR03705
ALIDE_RS12380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016181	Acyl-CoA N-acyltransferase		G3DSA:3.40.630.30|PF13444|PTHR37323|PTHR37323:SF1|SSF55729
ALIDE_RS12385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001633|IPR029787	EAL domain|GGDEF domain|Nucleotide cyclase|PAS domain		G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF13426|PTHR10799|PTHR10799:SF774|SM00052|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254
ALIDE_RS12390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005841|IPR005843|IPR005844|IPR005845|IPR005846|IPR006352|IPR016055|IPR016066	Alpha-D-phosphohexomutase superfamily|Alpha-D-phosphohexomutase, C-terminal|Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III|Alpha-D-phosphohexomutase, alpha/beta/alpha domain I|Alpha-D-phosphohexomutase, alpha/beta/alpha domain II|Alpha-D-phosphohexomutase, alpha/beta/alpha domain III|Alpha-D-phosphohexomutase, conserved site|Phosphoglucosamine mutase, bacterial type	GO:0000287|GO:0005975|GO:0008966|GO:0016868|GO:0071704	G3DSA:3.30.310.50|G3DSA:3.40.120.10|MF_01554_B|PF00408|PF02878|PF02879|PF02880|PR00509|PS00710|PTHR22573|PTHR22573:SF15|SSF53738|SSF55957|TIGR01455
ALIDE_RS12395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000489|IPR006390|IPR011005	Dihydropteroate synthase|Dihydropteroate synthase-like|Pterin-binding domain	GO:0004156|GO:0009396|GO:0042558|GO:0044237	G3DSA:3.20.20.20|PF00809|PS00792|PS00793|PTHR20941|PTHR20941:SF1|SSF51717|TIGR01496
ALIDE_RS12400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000642|IPR003593|IPR003959|IPR003960|IPR005936|IPR011546|IPR027417	AAA+ ATPase domain|ATPase, AAA-type, conserved site|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase|Peptidase M41|Peptidase M41, FtsH extracellular|Peptidase, FtsH	GO:0004222|GO:0005524|GO:0006508|GO:0008270|GO:0016020|GO:0016021	G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_01458|PF00004|PF01434|PF06480|PS00674|PTHR23076|SM00382|SSF140990|SSF52540|TIGR01241
ALIDE_RS12405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002877|IPR015507|IPR029063	Ribosomal RNA large subunit methyltransferase E|Ribosomal RNA methyltransferase FtsJ domain|S-adenosyl-L-methionine-dependent methyltransferase	GO:0001510|GO:0008168|GO:0032259	G3DSA:3.40.50.150|MF_01547|PF01728|PIRSF005461|PTHR10920|SSF53335
ALIDE_RS12410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001890	RNA-binding, CRM domain	GO:0003723	G3DSA:3.30.110.60|PD010559|PF01985|PTHR31846|SM01103|SSF75471
ALIDE_RS12415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029044	Nucleotide-diphospho-sugar transferases		G3DSA:3.90.550.10|SSF53448
ALIDE_RS12420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025423	Domain of unknown function DUF4149		PF13664
ALIDE_RS12425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001437|IPR006359|IPR018151|IPR022691|IPR023459|IPR028624	Transcription elongation factor GreA|Transcription elongation factor GreA/GreB|Transcription elongation factor GreA/GreB family|Transcription elongation factor, GreA/GreB, C-terminal|Transcription elongation factor, GreA/GreB, N-terminal|Transcription elongation factor, GreA/GreB, conserved site	GO:0003677|GO:0032784|GO:0070063	G3DSA:1.10.287.180|G3DSA:3.10.50.30|MF_00105|PF01272|PF03449|PIRSF006092|PS00829|PTHR30437|SSF46557|SSF54534|TIGR01462
ALIDE_RS12430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005479|IPR005480|IPR005483|IPR006275|IPR011607|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Carbamoyl-phosphate synthase large subunit, CPSase domain|Carbamoyl-phosphate synthase, large subunit|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Carbamoyl-phosphate synthetase, large subunit oligomerisation domain|Methylglyoxal synthase-like domain|Pre-ATP-grasp domain	GO:0003824|GO:0005524|GO:0006807	G3DSA:1.10.1030.10|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.1380|G3DSA:3.40.50.20|MF_01210_A|MF_01210_B|PF02142|PF02786|PF02787|PR00098|PS00866|PS00867|PTHR11405|PTHR11405:SF5|SM00851|SM01096|SSF48108|SSF52335|SSF52440|SSF56059|TIGR01369
ALIDE_RS12435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002474|IPR006274|IPR017926|IPR029062	Carbamoyl-phosphate synthase, small subunit|Carbamoyl-phosphate synthase, small subunit N-terminal domain|Class I glutamine amidotransferase-like|Glutamine amidotransferase	GO:0004088|GO:0006207|GO:0006541	G3DSA:3.40.50.880|G3DSA:3.50.30.20|MF_01209|PF00117|PF00988|PR00096|PR00097|PR00099|PTHR11405|SM01097|SSF52021|SSF52317|TIGR01368
ALIDE_RS12445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000551|IPR009061	MerR-type HTH domain|Putative DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.1660.10|PF13411|PTHR30204|PTHR30204:SF15|SM00422|SSF46955
ALIDE_RS12450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000119|IPR005684|IPR010992|IPR020816	Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain|Integration host factor, alpha subunit	GO:0003677|GO:0006310|GO:0006355|GO:0006417	G3DSA:4.10.520.10|MF_00380|PF00216|PR01727|PS00045|PTHR33175|PTHR33175:SF2|SM00411|SSF47729|TIGR00987
ALIDE_RS12455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002547|IPR004532|IPR005121|IPR005146|IPR005147|IPR009061|IPR012340|IPR020825	B3/B4 tRNA-binding domain|Nucleic acid-binding, OB-fold|Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding|Phenylalanine-tRNA ligase, class IIc, beta subunit|Phenylalanyl-tRNA synthetase, B3/B4|Putative DNA-binding domain|tRNA synthetase, B5-domain|tRNA-binding domain	GO:0000049|GO:0000287|GO:0003723|GO:0004826|GO:0005524|GO:0005737|GO:0006432|GO:0008033	G3DSA:2.40.50.140|G3DSA:3.30.56.10|G3DSA:3.30.56.20|G3DSA:3.30.70.380|G3DSA:3.30.930.10|G3DSA:3.50.40.10|MF_00283|PF01588|PF03147|PF03483|PF03484|PTHR10947|PTHR10947:SF0|SM00873|SM00874|SM00896|SSF46955|SSF50249|SSF54991|SSF55681|SSF56037|TIGR00472
ALIDE_RS12460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002319|IPR004188|IPR004529|IPR010978|IPR022911	Phenylalanine-tRNA ligase alpha chain 1, bacterial|Phenylalanine-tRNA ligase, class II, N-terminal|Phenylalanyl-tRNA synthetase|Phenylalanyl-tRNA synthetase, class IIc, alpha subunit|tRNA-binding arm	GO:0000049|GO:0000166|GO:0004812|GO:0004826|GO:0005524|GO:0005737|GO:0006432|GO:0043039	G3DSA:3.30.930.10|MF_00281|PF01409|PF02912|PTHR11538|SSF46589|SSF55681|TIGR00468
ALIDE_RS12465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005813	Ribosomal protein L20	GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843	G3DSA:1.10.1900.20|MF_00382|PD002389|PF00453|PR00062|PS00937|PTHR10986|PTHR10986:SF12|SSF74731|TIGR01032
ALIDE_RS12470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001706|IPR018265|IPR021137	Ribosomal protein L35|Ribosomal protein L35, conserved site|Ribosomal protein L35, non-mitochondrial	GO:0003735|GO:0005622|GO:0005840|GO:0006412	MF_00514|PF01632|PR00064|PS00936|PTHR33343|SSF143034|TIGR00001
ALIDE_RS12475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001288|IPR019813|IPR019814|IPR019815	Translation initiation factor 3|Translation initiation factor 3, C-terminal|Translation initiation factor 3, N-terminal|Translation initiation factor 3, conserved site	GO:0003743|GO:0006413	G3DSA:3.10.20.80|G3DSA:3.30.110.10|MF_00080|PF00707|PF05198|PS00938|PTHR10938|SSF54364|SSF55200|TIGR00168
ALIDE_RS12480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002314|IPR002320|IPR004095|IPR004154|IPR012675|IPR012676|IPR012947|IPR018163	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Anticodon-binding|Beta-grasp domain|TGS|TGS-like|Threonine-tRNA ligase, class IIa|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain	GO:0000166|GO:0004812|GO:0004829|GO:0005524|GO:0005737|GO:0006418|GO:0006435|GO:0016876|GO:0043039	G3DSA:3.10.20.30|G3DSA:3.30.54.20|G3DSA:3.30.930.10|G3DSA:3.30.980.10|G3DSA:3.40.50.800|MF_00184|PF00587|PF02824|PF03129|PF07973|PR01047|PTHR11451|PTHR11451:SF31|SM00863|SSF52954|SSF55186|SSF55681|SSF81271|TIGR00418
ALIDE_RS12485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR001437|IPR016181|IPR029462	Acyl-CoA N-acyltransferase|GNAT domain|Regulator of nucleoside diphosphate kinase, N-terminal domain|Transcription elongation factor, GreA/GreB, C-terminal	GO:0003677|GO:0008080|GO:0032784	G3DSA:3.10.50.30|G3DSA:3.40.630.30|PF01272|PF13302|PF14760|PTHR30437|PTHR30437:SF5|SSF54534|SSF55729
ALIDE_RS12490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006254|IPR015813|IPR018523	Isocitrate lyase|Isocitrate lyase/phosphorylmutase, conserved site|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824|GO:0004451|GO:0008152|GO:0019752	G3DSA:3.20.20.60|PF00463|PIRSF001362|PS00161|PTHR21631|SSF51621|TIGR01346
ALIDE_RS12495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR12715|PTHR12715:SF11|SSF103481
ALIDE_RS12500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003121|IPR019835	SWIB domain|SWIB/MDM2 domain	GO:0005515	G3DSA:1.10.245.10|PF02201|PTHR13844|SM00151|SSF47592
ALIDE_RS12505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007419	BFD-like [2Fe-2S]-binding domain		PF04324
ALIDE_RS12510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006260	TonB, C-terminal	GO:0006810	G3DSA:3.30.1150.10|PF03544|PR01217|PTHR33446|PTHR33446:SF2|SSF74653|TIGR01352
ALIDE_RS12515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002898	MotA/TolQ/ExbB proton channel	GO:0006810|GO:0008565|GO:0016020	PF01618|PTHR30625|PTHR30625:SF3
ALIDE_RS12520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003400	Biopolymer transport protein ExbD/TolR	GO:0005215|GO:0006810|GO:0016020	PF02472|PTHR30558
ALIDE_RS12525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR019600	Hemin uptake protein HemP		G3DSA:2.10.70.10|PF10636
ALIDE_RS12530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005624	Haem-degrading		PF03928|PTHR34309|PTHR34309:SF4|SSF143744
ALIDE_RS12535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006214	Bax inhibitor 1-related		PF01027|PTHR23291|PTHR23291:SF37
ALIDE_RS12540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000835|IPR011991	MarR-type HTH domain|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|PF01047|PR00598|PTHR33164|SM00347|SSF46785
ALIDE_RS12545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23501|SSF103473
ALIDE_RS12555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000390	Small multidrug resistance protein family	GO:0016021	PF00893|PTHR30561|PTHR30561:SF1|SSF103481
ALIDE_RS12560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003370	Chromate transporter	GO:0015109|GO:0015703	PF02417|PTHR33567
ALIDE_RS12565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003370	Chromate transporter	GO:0015109|GO:0015703	PF02417|PTHR33567
ALIDE_RS12570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003000|IPR026591|IPR027546|IPR029035	DHS-like NAD/FAD-binding domain|Sirtuin family|Sirtuin family, catalytic core small domain|Sirtuin, class III	GO:0036054|GO:0036055|GO:0070403	G3DSA:3.30.1600.10|G3DSA:3.40.50.1220|MF_01121|PF02146|PTHR11085|SSF52467
ALIDE_RS12575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR015893|IPR025996	DNA-binding HTH domain, TetR-type|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal|WHG domain	GO:0003677	G3DSA:1.10.357.10|PF00440|PF13305|PTHR30328|PTHR30328:SF6|SSF46689|SSF48498
ALIDE_RS12580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009874|IPR011008	Dimeric alpha-beta barrel|Protein of unknown function DUF1428		G3DSA:3.30.70.900|PF07237|PIRSF007028|SSF54909
ALIDE_RS12585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006913|IPR011057	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V|Mss4-like	GO:0008152|GO:0016846	G3DSA:3.90.1590.10|PF04828|PTHR28620|PTHR28620:SF2|SSF51316
ALIDE_RS12590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028973|IPR029068	3-demethylubiquinone-9 3-methyltransferase|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase		G3DSA:3.10.180.10|PF06983|PTHR33990|PTHR33990:SF1|SSF54593
ALIDE_RS12595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013538|IPR023393	Activator of Hsp90 ATPase homologue 1-like|START-like domain	GO:0006950	G3DSA:3.30.530.20|PF08327|PTHR36929|PTHR36929:SF1|SSF55961
ALIDE_RS12600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009725|IPR028973|IPR029068	3-demethylubiquinone-9 3-methyltransferase|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Predicted 3-demethylubiquinone-9 3-methyltransferase		G3DSA:3.10.180.10|PF06983|PIRSF021700|PTHR33990|PTHR33990:SF3|SSF54593
ALIDE_RS12605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase		G3DSA:3.10.180.10|PTHR33993|PTHR33993:SF4|SSF54593
ALIDE_RS12610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013538|IPR023393	Activator of Hsp90 ATPase homologue 1-like|START-like domain	GO:0006950	G3DSA:3.30.530.20|PF08327|PTHR36929|PTHR36929:SF1|SSF55961
ALIDE_RS12615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001537|IPR004441|IPR013123|IPR024915|IPR029026|IPR029028|IPR029064	23S rRNA (guanosine-2-O-)-methyltransferase RlmB|50S ribosomal protein L30e-like|Alpha/beta knot methyltransferases|RNA 2-O ribose methyltransferase, substrate binding|RNA methyltransferase TrmH family|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type	GO:0003723|GO:0006396|GO:0008168|GO:0008173	G3DSA:3.30.1330.30|G3DSA:3.40.1280.10|MF_01887|PF00588|PF08032|PTHR12029|SM00967|SSF55315|SSF75217|TIGR00186
ALIDE_RS12620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001991|IPR023025	Serine/threonine transporter SstT|Sodium:dicarboxylate symporter	GO:0015293|GO:0015826|GO:0016021|GO:0032329	G3DSA:1.10.3860.10|MF_01582|PF00375|PR00173|PTHR11958|PTHR11958:SF68|SSF118215
ALIDE_RS12625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF509|SM00382|SSF52540
ALIDE_RS12630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013830	SGNH hydrolase-type esterase domain		G3DSA:3.40.50.1110|PF13472|PTHR30383|PTHR30383:SF5|SSF52266
ALIDE_RS12635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018692	Predicted integral membrane protein DUF2189		PF09955
ALIDE_RS12640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000277|IPR015421|IPR015422|IPR015424	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PTHR11808|SSF53383
ALIDE_RS12645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007055|IPR014004	BON domain|Transport-associated and nodulation domain, bacteria		PF04972|PTHR34606|SM00749
ALIDE_RS12650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001902|IPR002645|IPR011547	SLC26A/SulP transporter|SLC26A/SulP transporter domain|STAS domain	GO:0008271|GO:0008272|GO:0015116|GO:0016020|GO:0016021|GO:0055085	G3DSA:3.30.750.24|PF00916|PF01740|PTHR11814|SSF52091
ALIDE_RS12655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR029787	GGDEF domain|Nucleotide cyclase		G3DSA:3.30.70.270|PF00990|PTHR10799|PTHR10799:SF750|SM00267|SSF55073|TIGR00254
ALIDE_RS12660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002586|IPR025501|IPR027417	ATP binding protein MinD|CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF01656|PIRSF003092|PTHR13696|PTHR13696:SF3|SSF52540
ALIDE_RS12665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR012694|IPR025110|IPR032387	AMP-binding enzyme C-terminal domain|AMP-dependent synthetase/ligase|Acetyl-coenzyme A synthetase, N-terminal domain|Propionate--CoA ligase	GO:0003824|GO:0008152|GO:0019629|GO:0050218	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PF16177|PTHR24095|PTHR24095:SF165|SSF56801|TIGR02316
ALIDE_RS12670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000868	Isochorismatase-like	GO:0003824|GO:0008152	G3DSA:3.40.50.850|PF00857|PTHR14119|SSF52499
ALIDE_RS12675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011041|IPR011042|IPR012938	Glucose/Sorbosone dehydrogenase|Six-bladed beta-propeller, TolB-like|Soluble quinoprotein glucose/sorbosone dehydrogenase	GO:0003824|GO:0005975|GO:0016901|GO:0048038	G3DSA:2.120.10.30|PF07995|PTHR19328|SSF50952
ALIDE_RS12680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30579|PTHR30579:SF3|SSF46785|SSF53850
ALIDE_RS12685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010061|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde/histidinol dehydrogenase|Methylmalonate-semialdehyde dehydrogenase	GO:0004491|GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PTHR11699|PTHR11699:SF181|SSF53720|TIGR01722
ALIDE_RS12690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009739	Protein of unknown function DUF1311		PF07007
ALIDE_RS12695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PS00073|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS12700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007076	TfoX, N-terminal		G3DSA:3.30.1460.30|PF04993|SSF159894
ALIDE_RS12705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002204|IPR006115|IPR008927|IPR011548|IPR013328|IPR015815|IPR016040|IPR029154	3-hydroxyisobutyrate dehydrogenase|3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|3-hydroxyisobutyrate dehydrogenase-related, conserved site|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0004616|GO:0008442|GO:0016491|GO:0051287|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PS00895|PTHR22981|SSF48179|SSF51735|TIGR01692
ALIDE_RS12710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006342|IPR029063	Methyltransferase FkbM|S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF05050|PTHR34203|PTHR34203:SF2|SSF53335|TIGR01444
ALIDE_RS12720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001926|IPR006653|IPR006654|IPR023026	Tryptophan synthase beta chain/beta chain-like|Tryptophan synthase beta subunit-like PLP-dependent enzyme|Tryptophan synthase, beta chain|Tryptophan synthase, beta chain, conserved site	GO:0000162|GO:0004834|GO:0006568	G3DSA:3.40.50.1100|MF_00133|PF00291|PIRSF001413|PS00168|PTHR10314|PTHR10314:SF3|SSF53686|TIGR00263
ALIDE_RS12725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007416	Protein of unknown function DUF469		PF04320|PTHR38778|PTHR38778:SF1
ALIDE_RS12730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007392|IPR013974|IPR017654	D-galactarate/Altronate dehydratase, C-terminal|Galactarate dehydratase GarD-like|SAF domain	GO:0008867|GO:0016829|GO:0046392	PF04295|PF08666|PTHR30536|PTHR30536:SF1|SM00858|TIGR03248
ALIDE_RS12735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS12740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001354|IPR013341|IPR013342|IPR029017|IPR029065	Enolase C-terminal domain-like|Enolase N-terminal domain-like|Mandelate racemase/muconate lactonizing enzyme, C-terminal|Mandelate racemase/muconate lactonizing enzyme, N-terminal domain|Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase	GO:0003824|GO:0008152	G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF02746|PF13378|PTHR13794|PTHR13794:SF56|SM00922|SSF51604|SSF54826
ALIDE_RS12745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|PTHR11751|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS12750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS12755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002220|IPR013785|IPR017655	5-dehydro-4-deoxyglucarate dehydratase|Aldolase-type TIM barrel|DapA-like	GO:0003824|GO:0008152|GO:0016052|GO:0016829|GO:0047448	G3DSA:3.20.20.70|MF_00694|PF00701|PIRSF001365|PTHR12128|PTHR12128:SF19|SM01130|SSF51569|TIGR03249
ALIDE_RS12760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS12765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006139|IPR006140|IPR016040	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain|NAD(P)-binding domain	GO:0008152|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF00389|PF02826|PTHR10996|PTHR10996:SF152|SSF51735|SSF52283
ALIDE_RS12770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001354|IPR013341|IPR013342|IPR029017|IPR029065	Enolase C-terminal domain-like|Enolase N-terminal domain-like|Mandelate racemase/muconate lactonizing enzyme, C-terminal|Mandelate racemase/muconate lactonizing enzyme, N-terminal domain|Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase	GO:0003824|GO:0008152	G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF02746|PF13378|PTHR13794|PTHR13794:SF47|SM00922|SSF51604|SSF54826
ALIDE_RS12775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|PTHR11699|PTHR11699:SF200|SSF53720
ALIDE_RS12780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004616|IPR016181	Acyl-CoA N-acyltransferase|Leucyl/phenylalanyl-tRNA-protein transferase	GO:0008914|GO:0030163	MF_00688|PF03588|PTHR30098|SSF55729|TIGR00667
ALIDE_RS12785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007471|IPR007472|IPR016181|IPR017138|IPR030700	Acyl-CoA N-acyltransferase|Arginine-tRNA-protein transferase|Arginine-tRNA-protein transferase, C-terminal|Arginine-tRNA-protein transferase, N-terminal|Putative arginyl-tRNA--protein transferase, prokaryotic	GO:0004057|GO:0016598	MF_00689|PF04376|PF04377|PIRSF037208|PTHR21367|PTHR21367:SF0|SSF55729
ALIDE_RS12790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003829|IPR011051|IPR012093|IPR014710	Pirin|Pirin, N-terminal domain|RmlC-like cupin domain|RmlC-like jelly roll fold		G3DSA:2.60.120.10|PF02678|PIRSF006232|PTHR13903|PTHR13903:SF7|SSF51182
ALIDE_RS12795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30126|PTHR30126:SF4|SSF46785|SSF53850
ALIDE_RS12800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002937|IPR023753	Amine oxidase|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.50.50.60|G3DSA:3.90.660.10|PF01593|PF13450|PR00419|PTHR16128|SSF51905
ALIDE_RS12805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000924|IPR014729|IPR020058|IPR022380	Glutamyl-Q tRNA(Asp) synthetase|Glutamyl/glutaminyl-tRNA synthetase|Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain|Rossmann-like alpha/beta/alpha sandwich fold	GO:0000166|GO:0005524|GO:0005737|GO:0006400|GO:0016876|GO:0043039	G3DSA:3.40.50.620|G3DSA:3.90.800.10|MF_01428|PF00749|PR00987|PTHR11451|PTHR11451:SF35|SSF52374|TIGR03838
ALIDE_RS12810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003358|IPR029063	S-adenosyl-L-methionine-dependent methyltransferase|tRNA (guanine-N-7) methyltransferase, Trmb type	GO:0006400|GO:0008176	G3DSA:3.40.50.150|MF_01057|PF02390|PTHR23417|PTHR23417:SF14|SSF53335|TIGR00091
ALIDE_RS12815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR029787	GGDEF domain|Nucleotide cyclase		G3DSA:3.30.70.270|PF00990|PTHR10799|SM00267|SSF55073|TIGR00254
ALIDE_RS12820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002318|IPR003156|IPR009000|IPR012947|IPR018162|IPR018163|IPR018164|IPR023033	Alanine-tRNA ligase, class IIc|Alanine-tRNA ligase, class IIc, anti-codon-binding domain|Alanine-tRNA ligase, eukaryota/bacteria|Alanyl-tRNA synthetase, class IIc, N-terminal|DHHA1 domain|Threonyl/alanyl tRNA synthetase, SAD|Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain|Translation protein, beta-barrel domain	GO:0000166|GO:0003676|GO:0004813|GO:0005524|GO:0005737|GO:0006419|GO:0016876|GO:0043039	G3DSA:3.30.930.10|MF_00036_B|PF01411|PF02272|PF07973|PR00980|PTHR11777|PTHR11777:SF9|SM00863|SSF101353|SSF50447|SSF55186|SSF55681|TIGR00344
ALIDE_RS12825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002220|IPR013785	Aldolase-type TIM barrel|DapA-like	GO:0003824|GO:0008152|GO:0016829	G3DSA:3.20.20.70|PF00701|PIRSF001365|PR00146|PTHR12128|PTHR12128:SF15|SM01130|SSF51569
ALIDE_RS12830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007387	Tripartite ATP-independent periplasmic transporter, DctQ component		PF04290|PTHR35011|PTHR35011:SF2
ALIDE_RS12835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004681|IPR010656	TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter permease protein	GO:0016021	PF06808|PIRSF006066|PTHR33362|PTHR33362:SF2|TIGR00786
ALIDE_RS12840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018389	TRAP transporter solute receptor DctP/TeaA	GO:0006810|GO:0030288	PF03480|PTHR33376|PTHR33376:SF2
ALIDE_RS12845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003767	Malate/L-lactate dehydrogenase	GO:0008152|GO:0016491|GO:0055114	G3DSA:1.10.1530.10|G3DSA:3.30.1370.60|PF02615|PTHR11091|SSF89733
ALIDE_RS12850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PTHR11751|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS12855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006145|IPR006224|IPR020103	Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982	PF00849|PS01129|PTHR11079|PTHR11079:SF61|SSF55120
ALIDE_RS12860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR003781|IPR016040|IPR016102|IPR016181|IPR032875	Acyl-CoA N-acyltransferase|CoA-binding|GNAT domain|NAD(P)-binding domain|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain	GO:0008080|GO:0048037	G3DSA:3.40.50.261|G3DSA:3.40.50.720|G3DSA:3.40.630.30|PF00583|PF13380|PF13549|PF13607|PTHR11117|PTHR11117:SF8|SSF51735|SSF52210|SSF55729|SSF56059
ALIDE_RS12865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007507	3-deoxy-D-manno-octulosonic-acid transferase, N-terminal		PF04413|PTHR23417|PTHR23417:SF2|SSF53756
ALIDE_RS12870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005841|IPR005843|IPR005844|IPR005845|IPR005846|IPR016055|IPR016066	Alpha-D-phosphohexomutase superfamily|Alpha-D-phosphohexomutase, C-terminal|Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III|Alpha-D-phosphohexomutase, alpha/beta/alpha domain I|Alpha-D-phosphohexomutase, alpha/beta/alpha domain II|Alpha-D-phosphohexomutase, alpha/beta/alpha domain III|Alpha-D-phosphohexomutase, conserved site	GO:0000287|GO:0005975|GO:0016868|GO:0071704	G3DSA:3.30.310.50|G3DSA:3.40.120.10|PF00408|PF02878|PF02879|PF02880|PR00509|PS00710|PTHR22573|PTHR22573:SF28|SSF53738|SSF55957
ALIDE_RS12875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF23|SSF53850
ALIDE_RS12880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS12885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011051|IPR014710|IPR021120|IPR024203	5-deoxy-glucuronate isomerase, IolB|KduI/IolB isomerase|RmlC-like cupin domain|RmlC-like jelly roll fold	GO:0008880|GO:0016861|GO:0019310	G3DSA:2.60.120.10|PF04962|PIRSF036628|PTHR39193|PTHR39193:SF1|SSF51182|TIGR04378
ALIDE_RS12890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002173|IPR011611|IPR018659|IPR029056|IPR030830	5-dehydro-2-deoxygluconokinase|Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Protein of unknown function DUF2090|Ribokinase-like	GO:0016773	G3DSA:3.40.1190.20|PF00294|PF09863|PS00584|PTHR10584|PTHR10584:SF194|SSF53613|TIGR04382
ALIDE_RS12895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000281|IPR001347|IPR009057|IPR011991	Helix-turn-helix protein RpiR|Homeodomain-like|Sugar isomerase (SIS)|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0005975|GO:0006355|GO:0030246	G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|PTHR30514|PTHR30514:SF3|SSF46689|SSF53697
ALIDE_RS12900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003265|IPR004026|IPR009057|IPR010316|IPR011257|IPR018060|IPR018062|IPR023170	Ada DNA repair, metal-binding|DNA binding HTH domain, AraC-type|DNA glycosylase|DNA-3-methyladenine glycosylase AlkA, N-terminal|HTH domain AraC-type, conserved site|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain|Homeodomain-like	GO:0003677|GO:0003700|GO:0003824|GO:0006281|GO:0006284|GO:0006355|GO:0008168|GO:0008270|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.1670.10|G3DSA:1.10.340.30|G3DSA:3.30.310.20|G3DSA:3.40.10.10|PF00730|PF02805|PF06029|PF12833|PS00041|PTHR10242|PTHR10242:SF3|SM00342|SM00478|SM01009|SSF46689|SSF48150|SSF55945|SSF57884
ALIDE_RS12905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001497|IPR008332|IPR011991|IPR014048	Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Methylated-DNA-[protein]-cysteine S-methyltransferase, active site|Methylguanine DNA methyltransferase, ribonuclease-like domain|Winged helix-turn-helix DNA-binding domain	GO:0003824|GO:0003908|GO:0006281	G3DSA:1.10.10.10|G3DSA:3.30.160.70|PF01035|PS00374|PTHR10815|PTHR10815:SF5|SSF46767|SSF53155|TIGR00589
ALIDE_RS12910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR12715|PTHR12715:SF17|SSF103481
ALIDE_RS12915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000253|IPR001054|IPR008984|IPR029787	Adenylyl cyclase class-3/4/guanylyl cyclase|Forkhead-associated (FHA) domain|Nucleotide cyclase|SMAD/FHA domain	GO:0005515|GO:0009190|GO:0016849|GO:0035556	G3DSA:2.60.200.20|G3DSA:3.30.70.1230|PF00211|PF00498|PTHR11920|PTHR11920:SF341|SM00240|SSF49879|SSF55073
ALIDE_RS12920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003507|IPR027461|IPR027478|IPR029062	Class I glutamine amidotransferase-like|LD-carboxypeptidase A, C-terminal domain|Murein tetrapeptide carboxypeptidase, N-terminal domain|Peptidase family S66		G3DSA:3.40.50.10740|G3DSA:3.50.30.60|PF02016|PIRSF028757|PTHR30237|PTHR30237:SF2|SSF141986|SSF52317
ALIDE_RS12925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR000639|IPR016192|IPR016193|IPR028883|IPR029058	APOBEC/CMP deaminase, zinc-binding|Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Cytidine deaminase-like|Epoxide hydrolase-like|tRNA-specific adenosine deaminase	GO:0002100|GO:0003824|GO:0008251|GO:0008270|GO:0016787	G3DSA:3.40.140.10|G3DSA:3.40.50.1820|MF_00972|PF00561|PF14437|PR00412|PS00903|PTHR11079|SSF53474|SSF53927
ALIDE_RS12930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007396|IPR012349	FMN-binding split barrel|Transcriptional regulator PAI 2-type	GO:0010181|GO:0016491|GO:0055114	G3DSA:2.30.110.10|PF04299|PIRSF010372|PTHR35802|PTHR35802:SF1|SSF50475
ALIDE_RS12935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001539|IPR020988	Peptidase U32|Peptidase U32, collagenase	GO:0006508|GO:0008233	PF01136|PF12392|PS01276|PTHR30217|PTHR30217:SF10|SSF51395
ALIDE_RS12940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000277|IPR006235|IPR015421|IPR015422|IPR015424	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme|O-acetylhomoserine/O-acetylserine sulfhydrylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0006520|GO:0016765|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01053|PIRSF001434|PS00868|PTHR11808|PTHR11808:SF12|SSF53383|TIGR01326
ALIDE_RS12945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005532|IPR016187|IPR017806|IPR024775	C-type lectin fold|DinB-like domain|Ergothioneine biosynthesis protein EgtB|Sulfatase-modifying factor enzyme	GO:0052699	G3DSA:3.90.1580.10|PF03781|PF12867|PTHR23150|PTHR23150:SF24|SSF109854|SSF56436|TIGR03440
ALIDE_RS12950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017804|IPR019257|IPR029063	Histidine-specific methyltransferase, SAM-dependent|Methyltransferase EgtD-like|S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF10017|PIRSF018005|PTHR30468|PTHR30468:SF6|SSF53335|TIGR03438
ALIDE_RS12955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005618|IPR011250	Outer membrane protein, OmpW|Outer membrane protein/outer membrane enzyme PagP,  beta-barrel	GO:0016021|GO:0019867	G3DSA:2.40.160.20|PF03922|PTHR36920|PTHR36920:SF1|SSF56925
ALIDE_RS12960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008526	Inner membrane protein YedI		PF05661|PIRSF016660|PTHR30503
ALIDE_RS12965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010073|IPR010918|IPR016188|IPR029062	AIR synthase-related protein, C-terminal domain|Class I glutamine amidotransferase-like|Phosphoribosylformylglycinamidine synthase|PurM-like, N-terminal domain	GO:0004642|GO:0006189	G3DSA:3.30.1330.10|G3DSA:3.40.50.880|MF_00419|PF02769|PF13507|PTHR10099|PTHR10099:SF5|SM01211|SSF109736|SSF52317|SSF55326|SSF56042|SSF82697|TIGR01735
ALIDE_RS12970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000994|IPR001714|IPR002467	Peptidase M24, methionine aminopeptidase|Peptidase M24, structural domain|Peptidase M24A, methionine aminopeptidase, subfamily 1	GO:0004177|GO:0006508|GO:0008235	G3DSA:3.90.230.10|MF_01974|PF00557|PR00599|PS00680|PTHR10804|PTHR10804:SF75|SSF55920|TIGR00500
ALIDE_RS12975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003607|IPR006674|IPR010043|IPR013546	Bifunctional uridylyltransferase/uridylyl-removing enzyme|HD domain|HD/PDEase domain|PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase	GO:0006807|GO:0008773|GO:0016779	G3DSA:1.10.3210.10|G3DSA:3.30.460.10|G3DSA:3.30.70.260|MF_00277|PF01966|PF08335|PF13740|PIRSF006288|PTHR13734|PTHR13734:SF45|SM00471|SSF109604|SSF55021|SSF81301|SSF81593|TIGR01693
ALIDE_RS12980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006042|IPR006043|IPR017588	Uric acid permease UacT-like|Xanthine/uracil permease|Xanthine/uracil/vitamin C permease	GO:0005215|GO:0006810|GO:0016020|GO:0016021|GO:0055085	PF00860|PS01116|PTHR11119|PTHR11119:SF3|TIGR00801|TIGR03173
ALIDE_RS12985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000181|IPR023635	Formylmethionine deformylase|Peptide deformylase	GO:0005506|GO:0042586	G3DSA:3.90.45.10|MF_00163|PF01327|PIRSF004749|PR01576|PTHR10458|PTHR10458:SF4|SSF56420|TIGR00079
ALIDE_RS12990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007401	Protein of unknown function DUF454		PF04304|PIRSF016789|PTHR35813|PTHR35813:SF1
ALIDE_RS13005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021831	ParD-like antitoxin of type II bacterial toxin-antitoxin system		PF11903
ALIDE_RS13010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010488|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Zeta toxin domain	GO:0005524|GO:0016301	G3DSA:3.40.50.300|PF06414|PTHR39206|PTHR39206:SF1|SSF52540
ALIDE_RS13015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001804|IPR004439|IPR019818|IPR024084	Isocitrate and isopropylmalate dehydrogenases family|Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic|Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain	GO:0000287|GO:0004450|GO:0006099|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.718.10|PF00180|PS00470|PTHR11835|PTHR11835:SF52|SM01329|SSF53659|TIGR00183
ALIDE_RS13020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003795	Protein of unknown function DUF192		PF02643|PTHR37953|PTHR37953:SF1
ALIDE_RS13025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004436|IPR024084	Isocitrate dehydrogenase NADP-dependent, monomeric|Isopropylmalate dehydrogenase-like domain	GO:0004450|GO:0006099|GO:0016616|GO:0055114	G3DSA:3.40.718.10|PF03971|PIRSF009407|PTHR36999|SSF53659|TIGR00178
ALIDE_RS13030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001189|IPR019831|IPR019832|IPR019833	Manganese/iron superoxide dismutase|Manganese/iron superoxide dismutase, C-terminal|Manganese/iron superoxide dismutase, N-terminal|Manganese/iron superoxide dismutase, binding site	GO:0004784|GO:0006801|GO:0046872|GO:0055114	G3DSA:1.10.287.990|PF00081|PF02777|PIRSF000349|PR01703|PS00088|PTHR11404|PTHR11404:SF8|SSF46609|SSF54719
ALIDE_RS13035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003753|IPR020579|IPR025824	Exonuclease VII, large subunit|Exonuclease VII, large subunit, C-terminal|OB-fold nucleic acid binding domain	GO:0003676|GO:0006308|GO:0008855|GO:0009318	MF_00378|PF02601|PF13742|PTHR30008|PTHR30008:SF0|TIGR00237
ALIDE_RS13040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002898	MotA/TolQ/ExbB proton channel	GO:0006810|GO:0008565|GO:0016020	PF01618|PTHR30625
ALIDE_RS13045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003400	Biopolymer transport protein ExbD/TolR	GO:0005215|GO:0006810|GO:0016020	PF02472|PTHR30558|PTHR30558:SF5
ALIDE_RS13050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003758|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Tetraacyldisaccharide 4'-kinase	GO:0005524|GO:0009029|GO:0009245	G3DSA:3.40.50.300|MF_00409|PF02606|PTHR30160|PTHR30160:SF13|SSF52540|TIGR00682
ALIDE_RS13055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005651	Uncharacterised protein family UPF0434/Trm112		G3DSA:2.20.25.10|MF_01187|PF03966|PTHR33505|SSF158997
ALIDE_RS13060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003329|IPR004528|IPR029044	3-deoxy-D-manno-octulosonate cytidylyltransferase|Acylneuraminate cytidylyltransferase|Nucleotide-diphospho-sugar transferases	GO:0005737|GO:0008690	G3DSA:3.90.550.10|MF_00057|PF02348|PTHR21485|PTHR21485:SF4|SSF53448|TIGR00466
ALIDE_RS13065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000850|IPR006259|IPR007862|IPR027417	Adenylate kinase subfamily|Adenylate kinase, active site lid domain|Adenylate kinase/UMP-CMP kinase|P-loop containing nucleoside triphosphate hydrolase	GO:0004017|GO:0005524|GO:0006139|GO:0016776|GO:0019205	G3DSA:3.40.50.300|MF_00235|PF00406|PF05191|PR00094|PS00113|PTHR23359|SSF52540|TIGR01351
ALIDE_RS13070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006034|IPR020827|IPR027473|IPR027474|IPR027475	Asparaginase/glutaminase|Asparaginase/glutaminase, active site 1|Asparaginase/glutaminase, active site 2|L-asparaginase, C-terminal domain|L-asparaginase, N-terminal	GO:0006520	G3DSA:3.40.50.1170|G3DSA:3.40.50.40|PF00710|PIRSF001220|PIRSF500176|PR00139|PS00144|PS00917|PTHR11707|PTHR11707:SF29|SM00870|SSF53774
ALIDE_RS13075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006197|IPR006199|IPR006200|IPR011991|IPR015927|IPR019759|IPR028360	LexA repressor, DNA-binding domain|Peptidase S24, LexA-like|Peptidase S24/S26, beta-ribbon domain|Peptidase S24/S26A/S26B|Peptidase S24/S26A/S26B/S26C|Transcription regulator LexA|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0004252|GO:0006355|GO:0006508|GO:0009432|GO:0045892	G3DSA:1.10.10.10|G3DSA:2.10.109.10|MF_00015|PF00717|PF01726|PR00726|PTHR33516|PTHR33516:SF2|SSF46785|SSF51306|TIGR00498
ALIDE_RS13085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001650|IPR003593|IPR007502|IPR010222|IPR011545|IPR011709|IPR014001|IPR024590|IPR027417	AAA+ ATPase domain|DEAD/DEAH box helicase domain|Domain of unknown function DUF1605|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Helicase-associated domain|P-loop containing nucleoside triphosphate hydrolase|RNA helicase HrpA|RNA helicase HrpA, C-terminal	GO:0003676|GO:0004004|GO:0004386|GO:0005524	G3DSA:3.40.50.300|PF00270|PF00271|PF04408|PF07717|PF11898|PTHR18934|PTHR18934:SF109|SM00382|SM00487|SM00490|SM00847|SSF52540|TIGR01967
ALIDE_RS13090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020613|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, conserved site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00737|PTHR18919|PTHR18919:SF69|SSF53901|TIGR01930
ALIDE_RS13095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|PTHR24096:SF232|SSF56801
ALIDE_RS13100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003784	BioY protein	GO:0005886|GO:0015225|GO:0015878	PF02632|PIRSF016661|PTHR34295|PTHR34295:SF2
ALIDE_RS13105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003339	ABC/ECF transporter, transmembrane component		PF02361
ALIDE_RS13110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417	AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PTHR24220|SM00382|SSF52540
ALIDE_RS13120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027367	YMGG-like Gly-zipper		PF13441
ALIDE_RS13125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004360|IPR004361|IPR018146|IPR029068	Glyoxalase I|Glyoxalase I, conserved site|Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain	GO:0004462|GO:0046872	G3DSA:3.10.180.10|PF00903|PS00934|PS00935|PTHR10374|SSF54593|TIGR00068
ALIDE_RS13130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006073|IPR027417	GTP binding domain|P-loop containing nucleoside triphosphate hydrolase	GO:0005525	G3DSA:3.40.50.300|PF01926|SSF52540
ALIDE_RS13135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006073|IPR027417	GTP binding domain|P-loop containing nucleoside triphosphate hydrolase	GO:0005525	G3DSA:3.40.50.300|PF01926|SSF52540
ALIDE_RS13140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005829|IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain|Sugar transporter, conserved site	GO:0005215|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PS00217|PTHR24064|PTHR24064:SF234|SSF103473
ALIDE_RS13145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS13150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003464|IPR011008|IPR026029	Dimeric alpha-beta barrel|Muconolactone delta-isomerase|Muconolactone isomerase domain	GO:0006725	PD006619|PF02426|PIRSF001486|SSF54909|TIGR03221
ALIDE_RS13155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR013595|IPR026968|IPR029058	3-oxoadipate enol-lactonase 1/2|Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal	GO:0042952|GO:0047570	G3DSA:3.40.50.1820|PF00561|PF08386|PTHR10992|PTHR10992:SF861|SSF53474|TIGR02427
ALIDE_RS13160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|PTHR24322|SSF51735
ALIDE_RS13165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000627|IPR007535|IPR012801|IPR015889	Catechol 1,2-dioxygenase, proteobacteria|Catechol dioxygenase, N-terminal|Intradiol ring-cleavage dioxygenase, C-terminal|Intradiol ring-cleavage dioxygenase, core	GO:0003824|GO:0005506|GO:0006725|GO:0008199|GO:0009712|GO:0016702|GO:0018576|GO:0019614|GO:0055114	G3DSA:2.60.130.10|PF00775|PF04444|PS00083|PTHR33711|PTHR33711:SF4|SSF49482|TIGR02439
ALIDE_RS13170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001354|IPR013341|IPR013342|IPR013370|IPR018110|IPR029017|IPR029065	Enolase C-terminal domain-like|Enolase N-terminal domain-like|Mandelate racemase/muconate lactonizing enzyme, C-terminal|Mandelate racemase/muconate lactonizing enzyme, N-terminal domain|Mandelate racemase/muconate lactonizing enzyme, conserved site|Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase|Muconate/chloromuconate cycloisomerase	GO:0003824|GO:0008152|GO:0009063|GO:0018849|GO:0018850|GO:0030145	G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF02746|PF13378|PS00909|PTHR13794|PTHR13794:SF55|SM00922|SSF51604|SSF54826|TIGR02534
ALIDE_RS13175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|SSF46785|SSF53850
ALIDE_RS13180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000887|IPR013785|IPR031337|IPR031338	Aldolase-type TIM barrel|KDPG/KHG aldolase|KDPG/KHG aldolase, active site 1|KDPG/KHG aldolase, active site 2	GO:0003824|GO:0008152|GO:0016829	G3DSA:3.20.20.70|PF01081|PS00159|PS00160|PTHR30246|PTHR30246:SF0|SSF51569|TIGR01182
ALIDE_RS13185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000581|IPR004786|IPR015928|IPR020558	6-phosphogluconate dehydratase|Aconitase/3-isopropylmalate dehydratase, swivel|Dihydroxy-acid/6-phosphogluconate dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site	GO:0003824|GO:0004456|GO:0008152|GO:0009255	PF00920|PS00886|PS00887|PTHR21000|PTHR21000:SF9|SSF143975|SSF52016|TIGR01196
ALIDE_RS13190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004682|IPR018389	TRAP transporter solute receptor DctP/TeaA|TRAP transporter solute receptor, DctP family	GO:0006810|GO:0030288	PF03480|PIRSF006470|PTHR33376|PTHR33376:SF2|TIGR00787
ALIDE_RS13195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004681|IPR010656	TRAP C4-dicarboxylate transport system permease DctM subunit|TRAP transporter permease protein	GO:0016021	PF06808|PIRSF006066|PTHR33362|PTHR33362:SF9|TIGR00786
ALIDE_RS13200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007387	Tripartite ATP-independent periplasmic transporter, DctQ component		PF04290|PTHR35011|PTHR35011:SF3
ALIDE_RS13205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006001|IPR027417|IPR031322	Carbohydrate kinase, thermoresistant glucokinase|P-loop containing nucleoside triphosphate hydrolase|Shikimate kinase/gluconokinase	GO:0005975|GO:0016301	G3DSA:3.40.50.300|PF01202|PTHR11603|SSF52540|TIGR01313
ALIDE_RS13210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000843|IPR010982|IPR028082	Lambda repressor-like, DNA-binding domain|Periplasmic binding protein-like I|Transcription regulator HTH, LacI	GO:0003677|GO:0003700|GO:0006355	G3DSA:1.10.260.40|G3DSA:3.40.50.2300|PF00356|PF13377|PTHR30146|PTHR30146:SF2|SM00354|SSF47413|SSF53822
ALIDE_RS13215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001270|IPR003593|IPR003959|IPR004176|IPR013461|IPR018368|IPR019489|IPR027417|IPR028299	AAA+ ATPase domain|ATP-dependent Clp protease ATP-binding subunit ClpA|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp, N-terminal|ClpA/B family|ClpA/B, conserved site 1|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase	GO:0004176|GO:0005524|GO:0019538	G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|PF02861|PF07724|PF10431|PR00300|PS00870|PS00871|PTHR11638|PTHR11638:SF111|SM00382|SM01086|SSF52540|SSF81923|TIGR02639
ALIDE_RS13220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003769|IPR014719|IPR022935	ATP-dependent Clp protease adaptor protein ClpS|Adaptor protein ClpS, core|Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GO:0030163	G3DSA:3.30.1390.10|MF_00302|PF02617|PTHR33473|SSF54736
ALIDE_RS13225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003141|IPR004013|IPR004805|IPR011708|IPR012340|IPR016195|IPR029460	Bacterial DNA polymerase III, alpha subunit|DNA polymerase III, alpha subunit|DNA polymerase, helix-hairpin-helix motif|Nucleic acid-binding, OB-fold|PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like	GO:0003677|GO:0003824|GO:0003887|GO:0006260|GO:0008408	G3DSA:2.40.50.140|G3DSA:3.20.20.140|PF02811|PF07733|PF14579|PTHR32294|PTHR32294:SF0|SM00481|SSF89550|TIGR00594
ALIDE_RS13230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990|IPR017689	Outer membrane protein assembly factor BamD|Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.25.40.10|MF_00922|PF13525|PTHR37423|SSF48452|TIGR03302
ALIDE_RS13235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006555|IPR010614|IPR027417	ATP-dependent helicase, C-terminal|DEAD2|P-loop containing nucleoside triphosphate hydrolase	GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006139|GO:0008026|GO:0016818	G3DSA:3.40.50.300|PF06733|PF13307|PTHR11472|PTHR11472:SF37|SM00491|SSF52540
ALIDE_RS13240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001932|IPR015655	PPM-type phosphatase domain|Protein phosphatase 2C family	GO:0003824|GO:0004722|GO:0006470	G3DSA:3.60.40.10|PF13672|PTHR13832|PTHR13832:SF226|SM00331|SM00332|SSF81606
ALIDE_RS13250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005654|IPR027417	ATPase, AFG1-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524	G3DSA:3.40.50.300|PF03969|PTHR12169|PTHR12169:SF11|SSF52540
ALIDE_RS13255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004099|IPR006258|IPR016156|IPR023753	Dihydrolipoamide dehydrogenase|FAD/NAD(P)-binding domain|FAD/NAD-linked reductase, dimerisation domain|Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	GO:0004148|GO:0016491|GO:0045454|GO:0050660|GO:0055114	G3DSA:3.30.390.30|G3DSA:3.50.50.60|PF02852|PF07992|PIRSF000350|PR00368|PR00411|PTHR22912|PTHR22912:SF131|SSF51905|SSF55424|TIGR01350
ALIDE_RS13260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR001078|IPR003016|IPR004167|IPR006255|IPR011053|IPR023213	2-oxo acid dehydrogenase, lipoyl-binding site|2-oxoacid dehydrogenase acyltransferase, catalytic domain|Biotin/lipoyl attachment|Chloramphenicol acetyltransferase-like domain|Dihydrolipoamide succinyltransferase|E3-binding domain|Single hybrid motif	GO:0004149|GO:0006099|GO:0008152|GO:0016746|GO:0045252	G3DSA:2.40.50.100|G3DSA:3.30.559.10|G3DSA:4.10.320.10|PF00198|PF00364|PF02817|PS00189|PTHR23151|PTHR23151:SF47|SSF47005|SSF51230|SSF52777|TIGR01347
ALIDE_RS13265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001017|IPR005475|IPR011603|IPR029061|IPR031717|IPR032106	2-oxoglutarate dehydrogenase E1 component|2-oxoglutarate dehydrogenase E1 component, N-terminal domain|Dehydrogenase, E1 component|Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal|Thiamin diphosphate-binding fold|Transketolase-like, pyrimidine-binding domain	GO:0004591|GO:0006099|GO:0008152|GO:0016624|GO:0030976|GO:0055114	G3DSA:3.40.50.970|PF00676|PF02779|PF16078|PF16870|PIRSF000157|PTHR23152|PTHR23152:SF4|SM00861|SSF52518|TIGR00239
ALIDE_RS13270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002549	Transmembrane protein TqsA-like		PF01594|PTHR21716|PTHR21716:SF13
ALIDE_RS13275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS13280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PTHR13943|PTHR13943:SF48
ALIDE_RS13285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010839	Protein of unknown function DUF1446		PF07287|PTHR13943|PTHR13943:SF48
ALIDE_RS13290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30419|PTHR30419:SF3|SSF46785|SSF53850
ALIDE_RS13295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006015|IPR006016|IPR014729	Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA	GO:0006950	G3DSA:3.40.50.620|PF00582|PR01438|SSF52402
ALIDE_RS13300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR013563|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0000166|GO:0005524|GO:0015833|GO:0016887	G3DSA:3.40.50.300|PF00005|PF08352|PS00211|PTHR24220|PTHR24220:SF574|SM00382|SSF52540
ALIDE_RS13305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR025966	ABC transporter type 1, transmembrane domain MetI-like|Oligopeptide transport permease C-like, N-terminal domain	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PF12911|PTHR30325|SSF161098
ALIDE_RS13310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30465|PTHR30465:SF66|SSF161098
ALIDE_RS13315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007318	Phospholipid methyltransferase		PD049902|PF04191|PTHR12714|PTHR12714:SF7
ALIDE_RS13320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000914|IPR030678	Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain	GO:0043190|GO:0055085	G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|PTHR30290|PTHR30290:SF2|SSF53850
ALIDE_RS13325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR014358|IPR016040	Enoyl-[acyl-carrier-protein] reductase (NADH)|NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR	GO:0004318|GO:0006633|GO:0055114	G3DSA:3.40.50.720|PF13561|PIRSF000094|PR00081|PTHR24322|PTHR24322:SF317|SSF51735
ALIDE_RS13330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR12715|PTHR12715:SF7|SSF103481
ALIDE_RS13335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007420	Protein of unknown function DUF465		PF04325
ALIDE_RS13340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012340|IPR029319	DNA ligase, OB-like domain|Nucleic acid-binding, OB-fold		G3DSA:2.40.50.140|G3DSA:3.30.1490.70|PF14743|PTHR10459|PTHR10459:SF61|SSF50249|SSF56091
ALIDE_RS13345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005496|IPR022301	Integral membrane protein TerC|Integral membrane protein YjbE	GO:0016021	PF03741|PTHR30060|TIGR03717
ALIDE_RS13350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000310|IPR005308|IPR008286|IPR011193|IPR015421|IPR015422|IPR015424	Orn/Lys/Arg decarboxylase, C-terminal|Orn/Lys/Arg decarboxylase, N-terminal|Orn/Lys/Arg decarboxylase, major domain|Ornithine/lysine/arginine decarboxylase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0005737|GO:0006520|GO:0016831	G3DSA:3.40.640.10|G3DSA:3.90.100.10|G3DSA:3.90.1150.10|PF01276|PF03709|PF03711|PIRSF009393|PS00703|PTHR11751|PTHR11751:SF406|SSF53383|SSF55904
ALIDE_RS13360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001107|IPR001972|IPR032435	Band 7 domain|Band 7, C-terminal extension|Stomatin family	GO:0016020	PF01145|PF16200|PR00721|PTHR10264|PTHR10264:SF27|SM00244|SSF117892
ALIDE_RS13365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30537|PTHR30537:SF15|SSF46785|SSF53850
ALIDE_RS13370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011766|IPR012000|IPR012001|IPR029035|IPR029061	DHS-like NAD/FAD-binding domain|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain	GO:0000287|GO:0003824|GO:0030976	G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|PTHR18968|PTHR18968:SF120|SSF52467|SSF52518
ALIDE_RS13380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003844	Uncharacterised protein family UPF0060	GO:0016020	MF_00010|PF02694|PTHR36116|PTHR36116:SF1|SSF103481
ALIDE_RS13385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762	DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.443.10|PF00589|PTHR30349|SSF56349
ALIDE_RS13390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005025|IPR014063|IPR029039	Arsenate resistance ArsH|Flavoprotein-like domain|NADPH-dependent FMN reductase-like	GO:0016491	G3DSA:3.40.50.360|PF03358|PTHR30041|PTHR30041:SF1|SSF52218|TIGR02690
ALIDE_RS13395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR004014|IPR006068|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299	Cation-transporting P-type ATPase, C-terminal|Cation-transporting P-type ATPase, N-terminal|HAD-like domain|P-type ATPase|P-type ATPase,  transmembrane domain|P-type ATPase, A  domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site	GO:0000166|GO:0016021|GO:0046872	G3DSA:1.20.1110.10|G3DSA:2.70.150.10|G3DSA:3.40.1110.10|PF00122|PF00689|PF00690|PF00702|PR00119|PR00120|PS00154|PTHR24093|SM00831|SSF56784|SSF81653|SSF81660|SSF81665|TIGR01494
ALIDE_RS13400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000838|IPR007627|IPR011991|IPR013249|IPR013324|IPR013325|IPR014284	RNA polymerase sigma factor 70, ECF, conserved site|RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987	G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|PS01063|PTHR30173|SSF88659|SSF88946|TIGR02937
ALIDE_RS13410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005524	Predicted permease DUF318		PF03773|PTHR34184|PTHR34184:SF2
ALIDE_RS13415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005243|IPR012336	Redox-active disulphide protein 2|Thioredoxin-like fold		G3DSA:3.40.30.10|PF13192|PIRSF037031|PTHR36450|PTHR36450:SF1|SSF52833
ALIDE_RS13420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003718|IPR015946	K homology domain-like, alpha/beta|OsmC/Ohr family		G3DSA:3.30.300.20|PF02566|SSF82784
ALIDE_RS13425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002524|IPR027469	Cation efflux protein|Cation efflux protein transmembrane domain	GO:0006812|GO:0008324|GO:0016021|GO:0055085	G3DSA:1.20.1510.10|PF01545|PTHR11562|SSF160240|SSF161111|TIGR01297
ALIDE_RS13430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				SSF56059
ALIDE_RS13435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR026869|IPR029055	Nucleophile aminohydrolases, N-terminal|Putative glutamine amidotransferase type 2		G3DSA:3.60.20.10|PF13230|PTHR11907|PTHR11907:SF10|SSF56235
ALIDE_RS13440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001221|IPR001433|IPR008333|IPR017896|IPR017938	4Fe-4S ferredoxin-type, iron-sulphur binding domain|Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel	GO:0016491|GO:0055114	G3DSA:2.40.30.10|G3DSA:3.30.70.20|G3DSA:3.40.50.80|PF00175|PF00970|PF12838|PR00410|PTHR19370|PTHR19370:SF68|SSF52343|SSF54862|SSF63380
ALIDE_RS13445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020610|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00099|PTHR18919|PTHR18919:SF95|SSF53901|TIGR01930
ALIDE_RS13450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021250	Protein of unknown function DUF2789		PF10982
ALIDE_RS13455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005243|IPR012336	Redox-active disulphide protein 2|Thioredoxin-like fold		G3DSA:3.40.30.10|PF13192|PIRSF037031|PTHR36450|PTHR36450:SF1|SSF52833
ALIDE_RS13460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005524	Predicted permease DUF318		PF03773|PTHR34184|PTHR34184:SF3
ALIDE_RS13470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS13475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS13480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000380|IPR003601|IPR003602|IPR005738|IPR006171|IPR013497|IPR013498|IPR013824|IPR013826|IPR023405|IPR023406	DNA topoisomerase III|DNA topoisomerase, type IA|DNA topoisomerase, type IA, DNA-binding domain|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 1|DNA topoisomerase, type IA, central region, subdomain 3|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|DNA topoisomerase, type IA, zn finger|Toprim domain	GO:0003677|GO:0003916|GO:0003917|GO:0005694|GO:0006265	G3DSA:1.10.290.10|G3DSA:1.10.460.10|G3DSA:3.30.65.10|G3DSA:3.40.50.140|PF01131|PF01396|PF01751|PR00417|PS00396|PTHR11390|SM00436|SM00437|SM00493|SSF56712|SSF57783|TIGR01056
ALIDE_RS13485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000424|IPR011344|IPR012340	Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding|Single-stranded DNA-binding protein	GO:0003697|GO:0006260	G3DSA:2.40.50.140|PF00436|PIRSF002070|SSF50249
ALIDE_RS13490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021502	Protein of unknown function DUF3158		PF11358
ALIDE_RS13495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014996	Integrating conjugative element protein, PFL4669		PF08900|TIGR03761
ALIDE_RS13505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021364	Protein of unknown function DUF2857		PF11198
ALIDE_RS13510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003115|IPR022304	Integrating conjugative element, PFGI-1, ParB|ParB/Sulfiredoxin		G3DSA:3.90.1530.10|SSF110849|TIGR03764
ALIDE_RS13515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				SSF54786
ALIDE_RS13520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025669|IPR027417	AAA domain|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF13614|PTHR13696|SSF52540
ALIDE_RS13525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010260	Prophage CP4-57 regulatory protein (AlpA)		PF05930|PTHR36154
ALIDE_RS13535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|SSF46785|SSF53850
ALIDE_RS13540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR004763|IPR027463	Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0006812|GO:0008324|GO:0016020|GO:0016021	G3DSA:1.10.3850.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF19|SSF82693|SSF82714|SSF82866|TIGR00914
ALIDE_RS13545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR021647|IPR032317	Copper binding periplasmic protein CusF|RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF11604|PF16576|PTHR30097|PTHR30097:SF3|SSF111369|TIGR01730
ALIDE_RS13550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423	Outer membrane efflux protein	GO:0005215|GO:0006810	G3DSA:1.20.1600.10|PF02321|SSF56954
ALIDE_RS13565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR008250|IPR018303|IPR023214|IPR023299|IPR027256	HAD-like domain|P-type ATPase|P-type ATPase, A  domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB	GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0046872	G3DSA:2.70.150.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00702|PR00119|PR00943|PS00154|PTHR24093|PTHR24093:SF50|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01525
ALIDE_RS13570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR024501|IPR029058	Alpha/Beta hydrolase fold|Protein of unknown function DUF3141		G3DSA:3.40.50.1820|PF11339|SSF53474
ALIDE_RS13575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008168|IPR009056	Cytochrome c, class IC|Cytochrome c-like domain	GO:0005506|GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF13442|PR00605|PTHR35008|PTHR35008:SF5|SSF46626
ALIDE_RS13580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007318	Phospholipid methyltransferase		PF04191|PTHR12714|PTHR12714:SF11
ALIDE_RS13585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021682	Protein of unknown function DUF2933		PF11666
ALIDE_RS13595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021647	Copper binding periplasmic protein CusF		PF11604
ALIDE_RS13600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000923|IPR008972	Blue (type 1) copper domain|Cupredoxin	GO:0005507|GO:0009055	G3DSA:2.60.40.420|PF00127|SSF49503
ALIDE_RS13605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005546|IPR007939	Autotransporter beta-domain|Copper resistance B precursor	GO:0005507|GO:0006878|GO:0009279	G3DSA:2.40.128.130|PF05275|SSF103515
ALIDE_RS13610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001117|IPR002355|IPR006376|IPR008972|IPR011706|IPR011707|IPR033138	Copper-resistance protein CopA|Cupredoxin|Multicopper oxidase, copper-binding site|Multicopper oxidase, type 1|Multicopper oxidase, type 2|Multicopper oxidase, type 3|Multicopper oxidases, conserved site	GO:0005507|GO:0016491|GO:0042597|GO:0055114	G3DSA:2.60.40.420|PF00394|PF07731|PF07732|PS00079|PS00080|PTHR11709|PTHR11709:SF33|SSF49503|TIGR01480
ALIDE_RS13615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR006291|IPR011006|IPR011991|IPR016032	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcriptional regulatory protein PcoR, heavy metal response|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF575|SM00448|SM00862|SSF46894|SSF52172|TIGR01387
ALIDE_RS13620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003660|IPR003661|IPR004358|IPR006290	HAMP domain|Heavy metal sensor kinase|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0000160|GO:0004673|GO:0004871|GO:0007165|GO:0016020|GO:0016021|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF00672|PF02518|PR00344|PTHR24423|PTHR24423:SF354|SM00304|SM00387|SM00388|SSF47384|SSF55874|TIGR01386
ALIDE_RS13625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025421	Protein of unknown function DUF4148		PF13663
ALIDE_RS13630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002355|IPR008972|IPR011706|IPR011707|IPR019546	Cupredoxin|Multicopper oxidase, copper-binding site|Multicopper oxidase, type 2|Multicopper oxidase, type 3|Twin-arginine translocation pathway, signal sequence, bacterial/archaeal	GO:0005507|GO:0016491|GO:0055114	G3DSA:2.60.40.420|PF07731|PF07732|PS00080|PTHR11709|PTHR11709:SF2|SSF49503|TIGR01409
ALIDE_RS13635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF1|SSF46689
ALIDE_RS13640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS13650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR12715|SSF103481
ALIDE_RS13655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR008250|IPR018303|IPR023214|IPR023299|IPR027256	HAD-like domain|P-type ATPase|P-type ATPase, A  domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB	GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0046872	G3DSA:2.70.150.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00702|PR00119|PR00941|PS00154|PS01229|PTHR24093|PTHR24093:SF317|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01525
ALIDE_RS13660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003735	Metal-sensitive transcriptional repressor	GO:0003677|GO:0006355|GO:0046872	PF02583|PTHR33677
ALIDE_RS13665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|SSF46785|SSF53850
ALIDE_RS13670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001387|IPR010982	Cro/C1-type helix-turn-helix domain|Lambda repressor-like, DNA-binding domain	GO:0003677|GO:0043565	G3DSA:1.10.260.40|PF01381|SM00530|SSF47413
ALIDE_RS13675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000119|IPR010992|IPR020816	Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain	GO:0003677	G3DSA:4.10.520.10|PF00216|PR01727|PS00045|PTHR33175|SM00411|SSF47729
ALIDE_RS13685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007791|IPR029024	Co-chaperone DjlA, N-terminal|TerB-like		G3DSA:1.10.3680.10|PF05099|SSF158682
ALIDE_RS13690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF18|SSF46785|SSF53850
ALIDE_RS13695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001804|IPR011829|IPR019818|IPR024084	Isocitrate and isopropylmalate dehydrogenases family|Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain|Tartrate dehydrogenase	GO:0000287|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.718.10|PF00180|PS00470|PTHR11835|PTHR11835:SF37|SM01329|SSF53659|TIGR02089
ALIDE_RS13700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002641|IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase|Patatin/Phospholipase A2-related	GO:0006629|GO:0008152	G3DSA:3.40.1090.10|PF01734|PTHR14226|PTHR14226:SF24|SSF52151
ALIDE_RS13705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|PTHR30126:SF3|SSF46785|SSF53850
ALIDE_RS13710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS13715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007392|IPR013974	D-galactarate/Altronate dehydratase, C-terminal|SAF domain	GO:0016829	PF04295|PF08666|PTHR30536|PTHR30536:SF5|SM00858
ALIDE_RS13720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010102|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase|Succinate semialdehyde dehydrogenase	GO:0008152|GO:0009013|GO:0009450|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|PTHR11699|PTHR11699:SF49|SSF53720|TIGR01780
ALIDE_RS13725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005000|IPR012689|IPR015813	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824|GO:0010124|GO:0018802	G3DSA:3.20.20.60|PF03328|PTHR30502|PTHR30502:SF5|SSF51621|TIGR02311
ALIDE_RS13730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010342|IPR029063	Protein of unknown function DUF938|S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF06080|PTHR20974|PTHR20974:SF0|SSF53335
ALIDE_RS13735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001920|IPR004391|IPR015942|IPR018187	Asp/Glu racemase|Asp/Glu racemase, active site 1|Asp/Glu/hydantoin racemase|Glutamate racemase	GO:0006807|GO:0008152|GO:0008881|GO:0009252|GO:0016855|GO:0036361	G3DSA:3.40.50.1860|MF_00258|PF01177|PS00923|PTHR21198|PTHR21198:SF2|SSF53681|TIGR00067
ALIDE_RS13740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002508|IPR007709|IPR010247	Cell wall hydrolase/autolysin, catalytic|N-formylglutamate amidohydrolase|N-formylglutamate deformylase	GO:0008745|GO:0009253	G3DSA:3.40.630.40|PF05013|SSF53187|TIGR02017
ALIDE_RS13745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006680|IPR010252|IPR032466	Amidohydrolase-related|Formiminoglutamate deiminase|Metal-dependent hydrolase	GO:0016787	G3DSA:3.20.20.140|PF01979|PTHR11271|PTHR11271:SF4|SSF51556|TIGR02022
ALIDE_RS13750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005920|IPR006680|IPR011059|IPR032466	Amidohydrolase-related|Imidazolonepropionase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain	GO:0005737|GO:0016787|GO:0016810|GO:0016812|GO:0019556	G3DSA:2.30.40.10|G3DSA:3.20.20.140|MF_00372|PF01979|PTHR22642|PTHR22642:SF1|SSF51338|SSF51556|TIGR01224
ALIDE_RS13755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010282|IPR011051|IPR014710	RmlC-like cupin domain|RmlC-like jelly roll fold|Uncharacterised protein family HutD/Ves		G3DSA:2.60.120.10|PF05962|PTHR37943|PTHR37943:SF1|SSF51182
ALIDE_RS13760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR030679	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|ABC-type amino acid transport system, ATPase component, HisP-type|P-loop containing nucleoside triphosphate hydrolase	GO:0003333|GO:0005524|GO:0015424|GO:0016887	G3DSA:3.40.50.300|PF00005|PIRSF039085|PS00211|PTHR24220|PTHR24220:SF447|SM00382|SSF52540
ALIDE_RS13765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR010065	ABC transporter type 1, transmembrane domain MetI-like|Amino acid ABC transporter, permease protein, 3-TM domain	GO:0005215|GO:0006810|GO:0016020|GO:0016021	G3DSA:1.10.3720.10|PF00528|PTHR30614|SSF161098|TIGR01726
ALIDE_RS13770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001320|IPR001638|IPR018313	Ionotropic glutamate receptor|Solute-binding protein  family 3/N-terminal domain of MltF|Solute-binding protein family 3, conserved site	GO:0004970|GO:0005215|GO:0006810|GO:0016020	G3DSA:3.40.190.10|PF00497|PS01039|PTHR18966|PTHR18966:SF152|SM00062|SM00079|SSF53850
ALIDE_RS13775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF14|SM00346|SSF46785|SSF55781
ALIDE_RS13780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023636|IPR023637	Urocanase|Urocanase conserved site	GO:0016153	G3DSA:3.40.1770.10|G3DSA:3.40.50.10730|MF_00577|PF01175|PIRSF001423|PS01233|PTHR12216|PTHR12216:SF3|SSF111326|TIGR01228
ALIDE_RS13785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001248|IPR026030	Purine-cytosine permease|Purine-cytosine permease Fcy2/21/22	GO:0005215|GO:0016020|GO:0016021|GO:0055085	PF02133|PIRSF002744|PTHR31806
ALIDE_RS13790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR010248|IPR011663|IPR011991|IPR028978	Chorismate pyruvate-lyase/UbiC transcription regulator-associated  domain|Histidine utilization repressor|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006355|GO:0006547|GO:0045892	G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|PTHR11751|PTHR11751:SF364|SM00345|SM00866|SSF46785|SSF64288|TIGR02018
ALIDE_RS13795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001106|IPR005921|IPR008948|IPR022313|IPR024083	Aromatic amino acid lyase|Fumarase/histidase, N-terminal|Histidine ammonia-lyase|L-Aspartase-like|Phenylalanine/histidine ammonia-lyases, active site	GO:0003824|GO:0004397|GO:0005737|GO:0006548|GO:0016841	G3DSA:1.10.275.10|G3DSA:1.20.200.10|MF_00229|PF00221|PS00488|PTHR10362|PTHR10362:SF7|SSF48557|TIGR01225
ALIDE_RS13800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR010248|IPR011663|IPR011991|IPR028978	Chorismate pyruvate-lyase/UbiC transcription regulator-associated  domain|Histidine utilization repressor|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006355|GO:0006547|GO:0045892	G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|PTHR11751|PTHR11751:SF364|SM00345|SM00866|SSF46785|SSF64288|TIGR02018
ALIDE_RS13805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417	AAA+ ATPase domain|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PTHR24220|PTHR24220:SF589|SM00382|SSF52540
ALIDE_RS13810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30151|PTHR30151:SF0|SSF161098
ALIDE_RS13815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015168	SsuA/THI5-like		G3DSA:3.40.190.10|PF09084|PTHR30024|PTHR30024:SF14|SSF53850
ALIDE_RS13820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PS00073|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS13825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS13830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|PTHR30346:SF13|SSF46785|SSF53850
ALIDE_RS13835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS13840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS13845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000891|IPR013785	Aldolase-type TIM barrel|Pyruvate carboxyltransferase	GO:0003824	G3DSA:3.20.20.70|PF00682|PTHR10277|PTHR10277:SF1|SSF51569
ALIDE_RS13850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS13855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS13860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016633	Uncharacterised conserved protein UCP015557		PF10093|PIRSF015557|TIGR03837
ALIDE_RS13865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001059|IPR008991|IPR011768|IPR012340|IPR013185|IPR013852|IPR014722|IPR015365|IPR020599	Elongation factor P, C-terminal|Nucleic acid-binding, OB-fold|Ribosomal protein L2 domain 2|Translation elongation factor P|Translation elongation factor P/YeiP|Translation elongation factor P/YeiP, central|Translation elongation factor P/YeiP, conserved site|Translation elongation factor, KOW-like|Translation protein SH3-like domain	GO:0003746|GO:0005737|GO:0006414|GO:0043043	G3DSA:2.30.30.30|G3DSA:2.40.50.140|MF_00141|PF01132|PF08207|PF09285|PIRSF005901|PS01275|PTHR30053|SM00841|SM01185|SSF50104|SSF50249|TIGR00038
ALIDE_RS13875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001734|IPR018247|IPR019899	EF-Hand 1, calcium-binding site|Sodium/solute symporter|Sodium/solute symporter, VC2705 subfamily	GO:0005215|GO:0006810|GO:0016020|GO:0055085	PF00474|PS00018|PTHR11819|PTHR11819:SF159|TIGR03648
ALIDE_RS13880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR019886	Sodium symporter small subunit, predicted		PF13937|TIGR03647
ALIDE_RS13885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000121|IPR002192|IPR006319|IPR008279|IPR013815|IPR013816|IPR015813|IPR018274|IPR023151	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|PEP-utilising enzyme, C-terminal|PEP-utilising enzyme, active site|PEP-utilising enzyme, conserved site|PEP-utilising enzyme, mobile domain|Phosphoenolpyruvate synthase|Pyruvate phosphate dikinase, PEP/pyruvate-binding|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824|GO:0005524|GO:0006090|GO:0008986|GO:0016301|GO:0016310|GO:0016772	G3DSA:3.20.20.60|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.50.30.10|PF00391|PF01326|PF02896|PIRSF000854|PS00370|PS00742|PTHR22931|PTHR22931:SF7|SSF51621|SSF52009|SSF56059|TIGR01418
ALIDE_RS13890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005177|IPR026530	Bifunctional kinase-pyrophosphorylase|Phosphoenolpyruvate synthase regulatory protein	GO:0005524|GO:0016772	MF_01062|PF03618|PTHR31756|PTHR31756:SF3
ALIDE_RS13895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR004763|IPR027463	Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0006812|GO:0008324|GO:0016020|GO:0016021	G3DSA:1.10.3850.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF4|SSF82693|SSF82714|SSF82866|TIGR00914
ALIDE_RS13900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032317	RND efflux pump, membrane fusion protein, barrel-sandwich domain		G3DSA:2.40.50.100|PF16576|PTHR30097|PTHR30097:SF4|SSF111369
ALIDE_RS13910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423	Outer membrane efflux protein	GO:0005215|GO:0006810	G3DSA:1.20.1600.10|PF02321|PTHR30026|SSF56954
ALIDE_RS13915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR020487	Cobalt/zinc/cadmium resistance protein CzcI		PD074011
ALIDE_RS13920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002226|IPR010582|IPR011614|IPR018028|IPR020835|IPR024708|IPR024711	Catalase active site|Catalase core domain|Catalase haem-binding site|Catalase immune-responsive domain|Catalase, mono-functional, haem-containing|Catalase, mono-functional, haem-containing, clades 1 and 3|Catalase-like domain	GO:0004096|GO:0006979|GO:0020037|GO:0055114	G3DSA:2.40.180.10|PF00199|PF06628|PIRSF038928|PR00067|PS00437|PS00438|PTHR11465|SM01060|SSF56634
ALIDE_RS13925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000103|IPR008255|IPR012081|IPR012336|IPR023753	Alkyl hydroperoxide reductase subunit F|FAD/NAD(P)-binding domain|Pyridine nucleotide-disulphide oxidoreductase, class-II|Pyridine nucleotide-disulphide oxidoreductase, class-II, active site|Thioredoxin-like fold	GO:0000302|GO:0008785|GO:0016491|GO:0016651|GO:0050660|GO:0051287|GO:0055114	G3DSA:3.40.30.10|G3DSA:3.50.50.60|PF07992|PF13192|PIRSF000238|PR00368|PR00469|PS00573|PTHR22912|PTHR22912:SF107|SSF51905|SSF52833|TIGR03140
ALIDE_RS13930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000866|IPR012336|IPR017559|IPR019479|IPR024706	Alkyl hydroperoxide reductase subunit C|Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Peroxiredoxin, C-terminal|Thioredoxin-like fold	GO:0006979|GO:0016209|GO:0016491|GO:0051920|GO:0055114	G3DSA:3.40.30.10|PF00578|PF10417|PIRSF000239|PTHR10681|PTHR10681:SF121|SSF52833|TIGR03137
ALIDE_RS13935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002024|IPR008331|IPR009078|IPR012347	Bacterioferritin|Ferritin-like superfamily|Ferritin-related|Ferritin/DPS protein domain	GO:0006826|GO:0006879|GO:0008199	G3DSA:1.20.1260.10|PF00210|PIRSF002560|PR00601|PS00549|PTHR30295|PTHR30295:SF0|SSF47240|TIGR00754
ALIDE_RS13940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023559	Flagellar transcriptional activator FlhD	GO:0044780|GO:0045893	MF_00725|PD015582|PF05247|SSF63592
ALIDE_RS13945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007944	Flagellar transcriptional activator FlhC	GO:0003677|GO:0045893|GO:1902208	MF_01891|PD016592|PF05280|PIRSF003159|SSF160930
ALIDE_RS13950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015813|IPR018129|IPR021135|IPR022805|IPR033129	Phosphoenolpyruvate carboxylase|Phosphoenolpyruvate carboxylase, His active site|Phosphoenolpyruvate carboxylase, Lys active site|Phosphoenolpyruvate carboxylase, bacterial/plant-type|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824|GO:0006099|GO:0008964|GO:0015977	G3DSA:1.20.1440.90|MF_00595|PF00311|PR00150|PS00393|PS00781|PTHR30523|PTHR30523:SF0|SSF51621
ALIDE_RS13955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000860|IPR022417|IPR022418	Porphobilinogen deaminase|Porphobilinogen deaminase, C-terminal|Porphobilinogen deaminase, N-terminal	GO:0004418|GO:0033014	G3DSA:3.30.160.40|G3DSA:3.40.190.10|MF_00260|PF01379|PF03900|PIRSF001438|PR00151|PTHR11557|PTHR11557:SF0|SSF53850|SSF54782|TIGR00212
ALIDE_RS13960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003754	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	GO:0004852|GO:0033014	G3DSA:3.40.50.10090|PF02602|PTHR38042|PTHR38042:SF1|SSF69618
ALIDE_RS13965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007470	Putative uroporphyrinogen-III C-methyltransferase HemX		PF04375|PTHR38043
ALIDE_RS13970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005254|IPR010817|IPR011990	HemY, N-terminal|Heme biosynthesis-associated TPR protein|Tetratricopeptide-like helical domain	GO:0005515|GO:0016020|GO:0042168	G3DSA:1.25.40.10|PF07219|SSF48452|TIGR00540
ALIDE_RS13975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000883|IPR023616	Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I domain	GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114	G3DSA:1.20.210.10|PF00115|PTHR10422|PTHR10422:SF21|SSF81442
ALIDE_RS13980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000883|IPR003468|IPR009056	Cytochrome c oxidase subunit I|Cytochrome c oxidase, monohaem subunit/FixO|Cytochrome c-like domain	GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114	G3DSA:1.10.760.10|PF02433|PTHR10422|PTHR10422:SF23|SSF46626
ALIDE_RS13985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009056	Cytochrome c-like domain	GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF13442|PTHR35008|SSF46626
ALIDE_RS13990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003782|IPR012336	Copper chaperone SCO1/SenC|Thioredoxin-like fold		G3DSA:3.40.30.10|PF02630|SSF52833
ALIDE_RS14000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001412|IPR002300|IPR002303|IPR009008|IPR009080|IPR010978|IPR013155|IPR014729|IPR019499	Aminoacyl-tRNA synthetase, class 1a, anticodon-binding|Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valine-tRNA ligase|Valyl-tRNA synthetase,  tRNA-binding arm|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain|tRNA-binding arm	GO:0000166|GO:0002161|GO:0004812|GO:0004832|GO:0005524|GO:0005737|GO:0006418|GO:0006438	G3DSA:1.10.287.380|G3DSA:1.10.730.10|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_02004|PF00133|PF08264|PF10458|PR00986|PS00178|PTHR11946|PTHR11946:SF5|SSF46589|SSF47323|SSF50677|SSF52374|TIGR00422
ALIDE_RS14005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005771|IPR005835|IPR029044	Nucleotide-diphospho-sugar transferases|Nucleotidyl transferase domain|UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type	GO:0003983|GO:0006011|GO:0009058|GO:0016779	G3DSA:3.90.550.10|PF00483|PTHR22572|PTHR22572:SF14|SSF53448|TIGR01099
ALIDE_RS14010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001455	TusA-like domain		G3DSA:3.30.110.40|PF01206|PS01148|PTHR33279|SSF64307
ALIDE_RS14015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000086|IPR015797|IPR020084|IPR029401	NUDIX hydrolase domain|NUDIX hydrolase domain-like|NUDIX hydrolase, conserved site|Nudix hydrolase, N-terminal	GO:0016787	G3DSA:2.20.70.10|G3DSA:3.90.79.10|PF00293|PF14803|PS00893|PTHR22769|SSF55811
ALIDE_RS14020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001216|IPR001926|IPR005856|IPR005858	Cysteine synthase|Cysteine synthase CysM|Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site|Tryptophan synthase beta subunit-like PLP-dependent enzyme	GO:0004124|GO:0006535	G3DSA:3.40.50.1100|PF00291|PS00901|PTHR10314|PTHR10314:SF100|SSF53686|TIGR01136|TIGR01138
ALIDE_RS14025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018733	Protein of unknown function DUF2274		PF10038
ALIDE_RS14030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005498	Type IV secretion system, VirB10 / TraB / TrbI		PF03743
ALIDE_RS14035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010258|IPR014142	Conjugal transfer, TrbG/VirB9/CagX|P-type conjugative transfer protein TrbG		PF03524|TIGR02775
ALIDE_RS14040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007430|IPR032710	Bacterial virulence protein VirB8|NTF2-like domain	GO:0016020	PF04335|SSF54427
ALIDE_RS14045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007688|IPR014150	Conjugal transfer, TrbL|Plasmid  conjugal transfer TrbL/VirB6	GO:0030255	PF04610|TIGR02783
ALIDE_RS14055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014147	Type IV conjugative transfer protein TrbJ		TIGR02780
ALIDE_RS14060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR018145|IPR027417	AAA+ ATPase domain|CagE, TrbE, VirB component of type IV transporter system, central domain|P-loop containing nucleoside triphosphate hydrolase	GO:0005524	G3DSA:3.40.50.300|PF03135|SM00382|SSF52540
ALIDE_RS14065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007792|IPR016704	Conjugal transfer, TrbD|Type IV secretion system, VirB3 / TrbD / AvhB		PD012561|PF05101|PIRSF017854
ALIDE_RS14070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007039	Conjugal transfer TrbC/type IV secretion VirB2		PF04956
ALIDE_RS14075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001482|IPR014149|IPR027417	Conjugative transfer, TrbB|P-loop containing nucleoside triphosphate hydrolase|Type II secretion system protein E	GO:0000746|GO:0005524|GO:0005737|GO:0006810	G3DSA:3.30.450.90|G3DSA:3.40.50.300|PF00437|PTHR30258|PTHR30258:SF12|SSF52540|TIGR02782
ALIDE_RS14080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002145|IPR010985|IPR013321	Arc-type ribbon-helix-helix|Ribbon-helix-helix|Ribbon-helix-helix protein, CopG	GO:0006355	G3DSA:1.10.1220.10|PF01402|SSF47598
ALIDE_RS14085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003688|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Type IV secretion system protein TraG/VirD4	GO:0009291|GO:0016020	G3DSA:3.40.50.300|PF02534|PTHR37937|PTHR37937:SF1|SSF52540
ALIDE_RS14095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|PTHR30346:SF6|SSF46785|SSF53850
ALIDE_RS14100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1		G3DSA:3.40.50.1820|PF12697|SSF53474
ALIDE_RS14105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002505|IPR012147	Phosphate acetyl/butaryl transferase|Phosphate acetyl/butyryltransferase	GO:0008152|GO:0016746	G3DSA:3.40.50.10750|PF01515|PIRSF000428|PTHR23406|PTHR23406:SF1|SSF53659
ALIDE_RS14110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006015|IPR006016|IPR014729	Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA	GO:0006950	G3DSA:3.40.50.620|PF00582|PR01438|PTHR31964|SSF52402
ALIDE_RS14115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR011283|IPR016040|IPR020904	Acetoacetyl-CoA reductase|NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0005737|GO:0016491|GO:0018454|GO:0042619|GO:0055114	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24322|PTHR24322:SF328|SM00822|SSF51735|TIGR01829
ALIDE_RS14125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010941|IPR029058	Alpha/Beta hydrolase fold|Poly-beta-hydroxybutyrate polymerase, N-terminal domain	GO:0042619	G3DSA:3.40.50.1820|PF07167|PTHR36837|PTHR36837:SF2|SSF53474
ALIDE_RS14130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR013570|IPR015893	DNA-binding HTH domain, TetR-type|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal|Transcription regulator YsiA, C-terminal	GO:0003677	G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PF08359|PTHR30055|SSF46689|SSF48498
ALIDE_RS14140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032317	RND efflux pump, membrane fusion protein, barrel-sandwich domain		G3DSA:2.40.50.100|PF16576|PTHR32347|PTHR32347:SF12|SSF111369
ALIDE_RS14145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF546|SM00382|SSF52540
ALIDE_RS14150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF12698|PTHR30294|PTHR30294:SF17
ALIDE_RS14155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000412	ABC-2 transporter	GO:0006810|GO:0016020	PF12698|PR00164|PTHR30294|PTHR30294:SF15
ALIDE_RS14160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423|IPR010131	Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT	GO:0005215|GO:0006810|GO:0008289|GO:0016020	G3DSA:1.20.1600.10|PF02321|PTHR30203|PTHR30203:SF3|SSF56954|TIGR01845
ALIDE_RS14165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001670|IPR018211	Alcohol dehydrogenase, iron-type|Alcohol dehydrogenase, iron-type, conserved site	GO:0016491|GO:0046872|GO:0055114	G3DSA:1.20.1090.10|G3DSA:3.40.50.1970|PF00465|PS00060|PS00913|PTHR11496|PTHR11496:SF78|SSF56796
ALIDE_RS14170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021309	Protein of unknown function DUF2892		PF11127
ALIDE_RS14175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001279|IPR011108|IPR022712	Beta-Casp domain|Metallo-beta-lactamase|Zn-dependent metallo-hydrolase, RNA specificity domain		G3DSA:3.60.15.10|PF00753|PF07521|PF10996|PTHR11203|PTHR11203:SF11|SM00849|SM01027|SSF56281
ALIDE_RS14180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005269|IPR031100	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG|LOG family		G3DSA:3.40.50.450|PF03641|PTHR31223|PTHR31223:SF1|SSF102405|TIGR00730
ALIDE_RS14185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018707	Protein of unknown function DUF2219		G3DSA:2.40.128.140|PF09982
ALIDE_RS14190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002321|IPR010980	Cytochrome c, class II|Cytochrome c/b562	GO:0005506|GO:0009055|GO:0020037|GO:0022900	G3DSA:1.20.120.10|PF01322|SSF47175
ALIDE_RS14195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000890|IPR004372|IPR023865	Acetate/propionate kinase|Aliphatic acid kinase, short-chain|Aliphatic acid kinase, short-chain, conserved site	GO:0005622|GO:0006082|GO:0008152|GO:0016301|GO:0016310|GO:0016774	G3DSA:3.30.420.40|MF_00020|PF00871|PIRSF000722|PR00471|PS01075|PTHR21060|PTHR21060:SF11|SSF53067|TIGR00016
ALIDE_RS14200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005593|IPR018970|IPR029061	Thiamin diphosphate-binding fold|Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase|Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal	GO:0005975|GO:0016832	G3DSA:3.40.50.970|PF03894|PF09364|PTHR31273|SSF52518
ALIDE_RS14205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021795	Protein of unknown function DUF3363		PF11843
ALIDE_RS14215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025961	Heavy-metal resistance protein		PF13801
ALIDE_RS14220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027383	Putative zinc-finger		PF13490
ALIDE_RS14225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007627|IPR011991|IPR013249|IPR013324|IPR013325|IPR014284	RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987	G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|PTHR30173|SSF88659|SSF88946|TIGR02937
ALIDE_RS14230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025711	PepSY domain		PF13670
ALIDE_RS14235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014469	Protein of unknown function DUF2271		PF10029
ALIDE_RS14240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001433|IPR001709|IPR005625|IPR008254|IPR008333|IPR017938|IPR029039	Flavodoxin/nitric oxide synthase|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein-like domain|Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|PepSY-associated TM protein|Riboflavin synthase-like beta-barrel	GO:0010181|GO:0016491|GO:0055114	G3DSA:2.40.30.10|G3DSA:3.40.50.360|G3DSA:3.40.50.80|PF00175|PF00258|PF00970|PF03929|PR00371|PTHR19384|PTHR19384:SF76|SSF52218|SSF52343|SSF63380
ALIDE_RS14245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003374|IPR024932	ApbE-like domain|Flavin transferase ApbE	GO:0017013	PF02424|PIRSF006268|PTHR30040|PTHR30040:SF3|SSF143631
ALIDE_RS14255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011577|IPR016174	Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane	GO:0009055|GO:0016020|GO:0016021|GO:0022904	PF01292|PTHR30529|PTHR30529:SF3|SSF81342
ALIDE_RS14260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000595|IPR011991|IPR012318|IPR014710|IPR018490	Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|PTHR24567|SM00100|SM00419|SSF46785|SSF51206
ALIDE_RS14265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006121	Heavy metal-associated domain, HMA	GO:0030001|GO:0046872	G3DSA:3.30.70.100|PF00403|SSF55008
ALIDE_RS14270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR008250|IPR018303|IPR023214|IPR023299|IPR027256	HAD-like domain|P-type ATPase|P-type ATPase, A  domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB	GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0046872	G3DSA:2.70.150.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00702|PR00119|PR00120|PS00154|PTHR24093|PTHR24093:SF317|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01512|TIGR01525
ALIDE_RS14275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021795	Protein of unknown function DUF3363		PF11843
ALIDE_RS14280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015927|IPR019533|IPR028360	Peptidase S24/S26, beta-ribbon domain|Peptidase S24/S26A/S26B/S26C|Peptidase S26		G3DSA:2.10.109.10|PF10502|SSF51306
ALIDE_RS14285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021263	Protein of unknown function DUF2840		PF11000
ALIDE_RS14290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010985|IPR013321	Arc-type ribbon-helix-helix|Ribbon-helix-helix	GO:0006355	G3DSA:1.10.1220.10|SSF47598
ALIDE_RS14295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS14300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS14315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|PTHR11941:SF86|SSF52096
ALIDE_RS14320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009057|IPR011075|IPR013570|IPR015893	Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal|Transcription regulator YsiA, C-terminal	GO:0003677	G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF08359|PTHR30055|SSF46689|SSF48498
ALIDE_RS14325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS14330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000891|IPR013785	Aldolase-type TIM barrel|Pyruvate carboxyltransferase	GO:0003824	G3DSA:3.20.20.70|PF00682|PTHR10277|PTHR10277:SF1|SSF51569
ALIDE_RS14335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain|Rudiment single hybrid motif|Single hybrid motif	GO:0003824|GO:0005524	G3DSA:2.40.50.100|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF00364|PF02785|PF02786|PS00867|PTHR18866|SM00878|SSF51230|SSF51246|SSF52440|SSF56059
ALIDE_RS14340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000022|IPR029045	Carboxyl transferase|ClpP/crotonase-like domain		G3DSA:3.90.226.10|PF01039|PTHR22855|PTHR22855:SF13|SSF52096
ALIDE_RS14345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873	AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PTHR36932|PTHR36932:SF1|SSF56801
ALIDE_RS14350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR018376|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|SSF52096
ALIDE_RS14355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|PTHR30483:SF17|SSF53822
ALIDE_RS14360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027304	Trigger factor/SurA domain		G3DSA:3.10.50.40|PF13616|PF13624|PTHR10657|PTHR10657:SF11|SSF109998|SSF54534
ALIDE_RS14370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000119|IPR010992|IPR020816	Histone-like DNA-binding protein|Histone-like DNA-binding protein, conserved site|Integration host factor (IHF)-like DNA-binding domain	GO:0003677	G3DSA:4.10.520.10|PF00216|PR01727|PS00045|PTHR33175|SM00411|SSF47729
ALIDE_RS14375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000462|IPR004570	CDP-alcohol phosphatidyltransferase|CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	GO:0008444|GO:0008654|GO:0016020|GO:0016021|GO:0016780	PF01066|PIRSF000847|PS00379|PTHR14269|PTHR14269:SF13|TIGR00560
ALIDE_RS14380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000305|IPR001162|IPR001943|IPR003583|IPR004791|IPR010994|IPR027299	GIY-YIG domain|GIY-YIG nuclease superfamily|Helix-hairpin-helix DNA-binding motif, class 1|RuvA domain 2-like|UVR domain|UvrABC system, subunit C|UvrC family homology region	GO:0003677|GO:0005515|GO:0005737|GO:0006281|GO:0009380|GO:0009381	G3DSA:1.10.150.20|G3DSA:3.40.1440.10|G3DSA:4.10.860.10|MF_00203|PF01541|PF02151|PF08459|PF14520|PTHR30562|PTHR30562:SF1|SM00278|SM00465|SSF46600|SSF47781|SSF82771|TIGR00194
ALIDE_RS14400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR11360|PTHR11360:SF126|SSF103473
ALIDE_RS14405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001801|IPR027444	Histone-like protein H-NS|Histone-like protein H-NS, C-terminal domain	GO:0003677|GO:0005622|GO:0006355	G3DSA:4.10.430.10|PF00816|SM00528|SSF81273
ALIDE_RS14410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF4|SM00346|SSF46785|SSF55781
ALIDE_RS14415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24322|SSF51735
ALIDE_RS14420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF221|SSF47203|SSF56645
ALIDE_RS14425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS14430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000709|IPR028081|IPR028082	Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I	GO:0006865	G3DSA:3.40.50.2300|PF13458|PR00337|PTHR30483|PTHR30483:SF6|SSF53822
ALIDE_RS14435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS14440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PTHR24220|PTHR24220:SF491|SM00382|SSF52540
ALIDE_RS14445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482|PTHR30482:SF10
ALIDE_RS14450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF371
ALIDE_RS14455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS14460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001702|IPR002299|IPR023614	Porin domain|Porin, Gram-negative type|Porin, Neisseria sp. type	GO:0006810|GO:0015288|GO:0016020	G3DSA:2.40.160.10|PF13609|PR00182|PR00184|SSF56935
ALIDE_RS14465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010290|IPR020846	Major facilitator superfamily domain|Transmembrane secretion effector		G3DSA:1.20.1250.20|PF05977|PTHR23513|PTHR23513:SF7|SSF103473
ALIDE_RS14470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR018376|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|PTHR11941:SF15|SSF52096
ALIDE_RS14475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|PTHR11699|PTHR11699:SF211|SSF53720
ALIDE_RS14480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|PTHR11699|SSF53720
ALIDE_RS14485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS14490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS14500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|PTHR11699|SSF53720
ALIDE_RS14505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR002328|IPR011032|IPR013149|IPR013154|IPR016040|IPR020843	Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS00059|PTHR11695|SM00829|SSF50129|SSF51735
ALIDE_RS14510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000709|IPR028081|IPR028082	Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I	GO:0006865	G3DSA:3.40.50.2300|PF13458|PR00337|PTHR30483|SSF53822
ALIDE_RS14515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF371
ALIDE_RS14520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851|IPR029022	ABC transporter, BtuC-like|ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	G3DSA:1.10.3470.10|PF02653|PTHR30482|PTHR30482:SF10
ALIDE_RS14525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PTHR24220|PTHR24220:SF358|SM00382|SSF52540
ALIDE_RS14530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS14535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007859|IPR023753	ETF-QO/FixX|FAD/NAD(P)-binding domain	GO:0016491|GO:0051536|GO:0055114	G3DSA:3.30.70.20|G3DSA:3.50.50.60|PF05187|PF13450|PR00420|PTHR10617|PTHR10617:SF107|SSF51905|SSF54373|SSF54862
ALIDE_RS14540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005000|IPR011206|IPR015813	Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824	G3DSA:3.20.20.60|PF03328|PIRSF015582|PTHR32308|SSF51621
ALIDE_RS14545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS14550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029069	HotDog domain		G3DSA:3.10.129.10|PF13452|PTHR28152|PTHR28152:SF1|SSF54637
ALIDE_RS14555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035	DHS-like NAD/FAD-binding domain|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold	GO:0009055|GO:0050660	G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|PTHR10909|PTHR10909:SF294|SM00893|SSF52402|SSF52467
ALIDE_RS14560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000049|IPR012255|IPR014729|IPR014730	Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold	GO:0009055	G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|PTHR21294|PTHR21294:SF8|SM00893|SSF52402
ALIDE_RS14565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|PTHR10909|PTHR10909:SF285|SSF47203|SSF56645
ALIDE_RS14570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|SSF46785|SSF53850
ALIDE_RS14575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS14580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS14585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF4|SM00346|SSF46785|SSF55781
ALIDE_RS14590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110|IPR032387	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetyl-coenzyme A synthetase, N-terminal domain	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PF16177|PS00455|PTHR24095|PTHR24095:SF184|SSF56801
ALIDE_RS14595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PTHR18919|SSF53901|TIGR01930
ALIDE_RS14600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24319|PTHR24319:SF23|SM00822|SSF51735
ALIDE_RS14605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PF13452|PTHR13078|PTHR13078:SF55|SSF54637
ALIDE_RS14610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PS00073|PTHR10909|SSF47203|SSF56645
ALIDE_RS14615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR000639|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Epoxide hydrolase-like	GO:0003824	G3DSA:3.40.50.1820|PF12697|PR00111|PR00412|PTHR10992|PTHR10992:SF868|SSF53474
ALIDE_RS14620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF4|SM00346|SSF46785|SSF55781
ALIDE_RS14625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF4|SM00346|SSF46785|SSF55781
ALIDE_RS14630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS14635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021312	Protein of unknown function DUF2889		PF11136
ALIDE_RS14640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS14645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000172|IPR007867|IPR012132|IPR023753	FAD/NAD(P)-binding domain|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal	GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.50.50.60|PF00732|PF05199|PIRSF000137|PS00623|PS00624|PTHR11552|SSF51905|SSF54373
ALIDE_RS14650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|PTHR11699|SSF53720
ALIDE_RS14655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|SSF46785|SSF53850
ALIDE_RS14660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS14665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS14670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|SSF52096
ALIDE_RS14675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00081|PTHR24322|PTHR24322:SF57|SM00822|SSF51735
ALIDE_RS14685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|SSF47203|SSF56645
ALIDE_RS14690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PTHR13078|SSF54637
ALIDE_RS14695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010839	Protein of unknown function DUF1446		PF07287|PTHR13943|PTHR13943:SF48
ALIDE_RS14700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PTHR13943|PTHR13943:SF48
ALIDE_RS14705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020613|IPR020615|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00737|PTHR18919|PTHR18919:SF83|SSF53901
ALIDE_RS14710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS14715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS14720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS14725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029069	HotDog domain		G3DSA:3.10.129.10|SSF54637
ALIDE_RS14730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF591|SSF89796
ALIDE_RS14735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS14740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30118|SSF46785|SSF53850
ALIDE_RS14745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS14750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00081|PTHR24322|PTHR24322:SF602|SSF51735
ALIDE_RS14755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001155|IPR013785|IPR016040|IPR023753	Aldolase-type TIM barrel|FAD/NAD(P)-binding domain|NAD(P)-binding domain|NADH:flavin oxidoreductase/NADH oxidase, N-terminal	GO:0003824|GO:0010181|GO:0016491|GO:0055114	G3DSA:3.20.20.70|G3DSA:3.40.50.720|PF00724|PF07992|PR00411|PTHR22893|SSF51395|SSF51905
ALIDE_RS14760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS14765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PTHR24220|PTHR24220:SF358|SM00382|SSF52540
ALIDE_RS14770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482
ALIDE_RS14775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795
ALIDE_RS14780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|SSF53822
ALIDE_RS14785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR018376|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|SSF52096
ALIDE_RS14790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000415|IPR029479	Nitroreductase|Nitroreductase-like	GO:0016491	G3DSA:3.40.109.10|PF00881|PTHR23026|PTHR23026:SF90|SSF55469
ALIDE_RS14795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009959|IPR011944|IPR032710	NTF2-like domain|Polyketide cyclase SnoaL-like domain|Steroid delta5-4-isomerase		G3DSA:3.10.450.50|PF13474|SSF54427|TIGR02246
ALIDE_RS14800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS14805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF591|SSF89796
ALIDE_RS14810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS14815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF241|SSF47203|SSF56645
ALIDE_RS14820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PTHR13078|SSF54637
ALIDE_RS14825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005000|IPR011206|IPR015813	Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824	G3DSA:3.20.20.60|PF03328|PIRSF015582|PTHR32308|SSF51621
ALIDE_RS14830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR015893|IPR023772	DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal	GO:0003677	G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|PS01081|PTHR30055|SSF46689|SSF48498
ALIDE_RS14845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003111|IPR003593|IPR003959|IPR004815|IPR008268|IPR008269|IPR014721|IPR015947|IPR020568|IPR027065|IPR027417|IPR027543	AAA+ ATPase domain|ATP-dependent protease La (LON), substrate-binding domain|ATPase, AAA-type, core|Lon protease|Lon protease, bacterial|Lon protease, bacterial/eukaryotic-type|P-loop containing nucleoside triphosphate hydrolase|PUA-like domain|Peptidase S16, Lon C-terminal|Peptidase S16, active site|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup	GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0030163|GO:0043565	G3DSA:1.10.8.60|G3DSA:3.30.230.10|G3DSA:3.40.50.300|MF_01973|PF00004|PF02190|PF05362|PIRSF001174|PR00830|PS01046|PTHR10046|PTHR10046:SF43|SM00382|SM00464|SSF52540|SSF54211|SSF88697|TIGR00763
ALIDE_RS14850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR003959|IPR004487|IPR010603|IPR019489|IPR027417	AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Clp protease, ATP-binding subunit ClpX|P-loop containing nucleoside triphosphate hydrolase|Zinc finger, ClpX C4-type	GO:0005524|GO:0006457|GO:0008270|GO:0046983|GO:0051082	G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_00175|PF06689|PF07724|PF10431|PTHR11262|PTHR11262:SF4|SM00382|SM00994|SM01086|SSF52540|SSF57716|TIGR00382
ALIDE_RS14855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001907|IPR023562|IPR029045	ATP-dependent Clp protease proteolytic subunit|Clp protease proteolytic subunit /Translocation-enhancing protein TepA|ClpP/crotonase-like domain	GO:0004252|GO:0006508	G3DSA:3.90.226.10|MF_00444|PF00574|PR00127|PTHR10381|PTHR10381:SF22|SSF52096|TIGR00493
ALIDE_RS14860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001179|IPR005215|IPR008880|IPR008881|IPR027304	FKBP-type peptidyl-prolyl cis-trans isomerase domain|Trigger factor|Trigger factor, C-terminal|Trigger factor, ribosome-binding, bacterial|Trigger factor/SurA domain	GO:0006457|GO:0015031	G3DSA:1.10.3120.10|G3DSA:3.10.50.40|G3DSA:3.30.70.1050|MF_00303|PF00254|PF05697|PF05698|PIRSF003095|PTHR30560|PTHR30560:SF3|SSF102735|SSF109998|SSF54534|TIGR00115
ALIDE_RS14870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR027463	Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0016020	G3DSA:1.10.3850.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF18|SSF82693|SSF82714|SSF82866
ALIDE_RS14875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR032317	RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF16576|PTHR30469|SSF111369|TIGR01730
ALIDE_RS14880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002060|IPR008949|IPR017827	Isoprenoid synthase domain|Squalene synthase HpnC|Squalene/phytoene synthase	GO:0009058|GO:0016740	G3DSA:1.10.600.10|PF00494|PTHR31480|PTHR31480:SF8|SSF48576|TIGR03464
ALIDE_RS14885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002060|IPR008949|IPR017828|IPR019845	Isoprenoid synthase domain|Squalene/phytoene synthase|Squalene/phytoene synthase HpnD|Squalene/phytoene synthase, conserved site	GO:0009058|GO:0016117|GO:0016740|GO:0016765|GO:0016767	G3DSA:1.10.600.10|PF00494|PS01045|PTHR31480|SSF48576|TIGR03465
ALIDE_RS14890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003122|IPR003660|IPR004089|IPR004090	Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor, ligand-binding|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain	GO:0004871|GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021	G3DSA:1.10.287.950|PF00015|PF00672|PF02203|PR00260|PTHR32089|PTHR32089:SF63|SM00283|SM00304|SSF58104
ALIDE_RS14895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002937|IPR017830|IPR023753	Amine oxidase|FAD/NAD(P)-binding domain|Squalene-associated FAD-dependent desaturase	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF01593|PTHR10742|SSF51905|TIGR03467
ALIDE_RS14900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021296|IPR021871	Protein of unknown function DUF2868|Protein of unknown function DUF3482		PF11067|PF11981
ALIDE_RS14905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017039|IPR023679	Uncharacterised protein family UPF0761, bacterial|Virulence factor BrkB		MF_00672|PF03631|PTHR30213|PTHR30213:SF0|TIGR00765
ALIDE_RS14910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018643	Protein of unknown function DUF2069, membrane		PF09842
ALIDE_RS14915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004113|IPR006094|IPR016164|IPR016166|IPR016167|IPR016169|IPR016171	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD linked oxidase, N-terminal|FAD-binding, type 2|FAD-binding, type 2, subdomain 1|FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal|Vanillyl-alcohol oxidase, C-terminal subdomain 2	GO:0003824|GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:1.10.45.10|G3DSA:3.30.43.10|G3DSA:3.30.465.10|PF01565|PF02913|PTHR11748|PTHR11748:SF76|SSF55103|SSF56176
ALIDE_RS14920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000398|IPR020940|IPR023451	Thymidylate synthase|Thymidylate synthase, active site|Thymidylate synthase/dCMP hydroxymethylase domain	GO:0004799|GO:0006231	G3DSA:3.30.572.10|MF_00008|PF00303|PR00108|PS00091|PTHR11548|SSF55831|TIGR03284
ALIDE_RS14925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001796|IPR012259|IPR017925|IPR024072	Dihydrofolate reductase|Dihydrofolate reductase conserved site|Dihydrofolate reductase domain|Dihydrofolate reductase-like domain	GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114	G3DSA:3.40.430.10|PF00186|PIRSF000194|PR00070|PS00075|PTHR22778|PTHR22778:SF16|SSF53597
ALIDE_RS14930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021549	Protein of unknown function DUF2894		PF11445
ALIDE_RS14935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006665	OmpA-like domain		G3DSA:3.30.1330.60|PF00691|PTHR30128|SSF103088
ALIDE_RS14940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008520	Domain of unknown function DUF802		PF05650
ALIDE_RS14945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021783	Protein of unknown function DUF3348		PF11828
ALIDE_RS14950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002559	Transposase, IS4-like	GO:0003677|GO:0004803|GO:0006313	PF01609|PTHR30007|PTHR30007:SF22
ALIDE_RS14955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025161	Putative transposase IS4/IS5 family		PF13340|PTHR30007|PTHR30007:SF21
ALIDE_RS14960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF516|SM00448|SM00862|SSF52172
ALIDE_RS14965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR003852|IPR004358|IPR006016|IPR014729|IPR025201|IPR027417	Histidine kinase-like ATPase, C-terminal domain|P-loop containing nucleoside triphosphate hydrolase|Rossmann-like alpha/beta/alpha sandwich fold|Sensor protein KdpD, transmembrane domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal|Signal transduction histidine kinase-related protein, C-terminal|UspA	GO:0000155|GO:0000160|GO:0004673|GO:0006950|GO:0007165|GO:0016020|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:1.20.120.620|G3DSA:3.30.565.10|G3DSA:3.40.50.300|G3DSA:3.40.50.620|PF00512|PF00582|PF02518|PF02702|PF13493|PR00344|PTHR24423|PTHR24423:SF562|SM00387|SM00388|SSF47384|SSF52402|SSF52540|SSF55874
ALIDE_RS14970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003820	Potassium-transporting ATPase C chain	GO:0006813|GO:0008556|GO:0016021	MF_00276|PF02669|PIRSF001296|PTHR30042|PTHR30042:SF2|TIGR00681
ALIDE_RS14975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR006391|IPR008250|IPR018303|IPR023214|IPR023299	HAD-like domain|P-type ATPase|P-type ATPase, A  domain|P-type ATPase, B chain, subfamily IA|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site	GO:0000166|GO:0005524|GO:0006813|GO:0008556|GO:0016021|GO:0046872	G3DSA:2.70.150.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|MF_00285|PF00122|PF00702|PR00119|PS00154|PTHR24093|PTHR24093:SF49|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01497
ALIDE_RS14980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004623	Potassium-transporting ATPase A chain	GO:0005886|GO:0006813|GO:0008556	MF_00275|PF03814|PIRSF001294|PTHR30607|TIGR00680
ALIDE_RS14990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004808|IPR005135|IPR020848	AP endonuclease 1|AP endonuclease 1, conserved site|Endonuclease/exonuclease/phosphatase	GO:0003677|GO:0004518|GO:0004519|GO:0005622|GO:0006281	G3DSA:3.60.10.10|PF03372|PS00728|PTHR22748|PTHR22748:SF7|SSF56219|TIGR00195|TIGR00633
ALIDE_RS14995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR002078|IPR002197|IPR003593|IPR009057|IPR010114|IPR011006|IPR025662|IPR025943|IPR025944|IPR027417	AAA+ ATPase domain|CheY-like superfamily|DNA binding HTH domain,  Fis-type|Homeodomain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site|Signal transduction response regulator, nitrogen regulation NR(I)|Signal transduction response regulator, receiver domain	GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0006808|GO:0008134|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PF02954|PR01590|PS00675|PS00676|PS00688|PTHR32071|PTHR32071:SF15|SM00382|SM00448|SSF46689|SSF52172|SSF52540|TIGR01818
ALIDE_RS15000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR003594|IPR003661|IPR004358	Histidine kinase-like ATPase, C-terminal domain|PAS domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|PTHR24423|PTHR24423:SF488|SM00387|SM00388|SSF47384|SSF55785|SSF55874
ALIDE_RS15010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004809|IPR008146|IPR008147|IPR014746|IPR027302|IPR027303	Glutamine synthetase type I|Glutamine synthetase, N-terminal conserved site|Glutamine synthetase, beta-Grasp domain|Glutamine synthetase, catalytic domain|Glutamine synthetase, glycine-rich site|Glutamine synthetase/guanido kinase, catalytic domain	GO:0003824|GO:0004356|GO:0005737|GO:0006542|GO:0006807|GO:0009399	G3DSA:3.10.20.70|G3DSA:3.30.590.10|PF00120|PF03951|PS00180|PS00181|PTHR20852|PTHR20852:SF15|SM01230|SSF54368|SSF55931|TIGR00653
ALIDE_RS15015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001453	MoaB/Mog domain		G3DSA:3.40.980.10|PF00994|PTHR13939|SM00852|SSF53218
ALIDE_RS15020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF07264
ALIDE_RS15025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006694	Fatty acid hydroxylase	GO:0005506|GO:0006633|GO:0016491|GO:0055114	PF04116
ALIDE_RS15030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002509|IPR011330	Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain	GO:0003824|GO:0005975|GO:0016810	G3DSA:3.20.20.370|PF01522|PTHR10587|SSF88713
ALIDE_RS15035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011045|IPR015943	Nitrous oxide reductase, N-terminal|WD40/YVTN repeat-like-containing domain	GO:0005515	G3DSA:2.130.10.10|PF02239|PTHR13833|SSF50974
ALIDE_RS15040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000748|IPR002942|IPR006145|IPR018496|IPR020103	Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain|RNA-binding S4 domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866	G3DSA:3.10.290.10|PF00849|PS01149|PTHR21600|SSF55120|SSF55174|TIGR00093
ALIDE_RS15070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000836|IPR029057	Phosphoribosyltransferase domain|Phosphoribosyltransferase-like	GO:0009116	G3DSA:3.40.50.2020|PF00156|SSF53271
ALIDE_RS15075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001114|IPR018220|IPR027417|IPR033128	Adenylosuccinate synthase,  active site|Adenylosuccinate synthase, GTP-binding site|Adenylosuccinate synthetase|P-loop containing nucleoside triphosphate hydrolase	GO:0004019|GO:0005525|GO:0006164	G3DSA:1.10.300.10|G3DSA:3.40.440.10|G3DSA:3.90.170.10|MF_00011|PF00709|PS00513|PS01266|PTHR11846|SM00788|SSF52540|TIGR00184
ALIDE_RS15080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004516|IPR004517	ATP phosphoribosyltransferase regulatory subunit|Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit	GO:0000105|GO:0005737	G3DSA:3.30.930.10|MF_00125|PF13393|PIRSF001549|PTHR11476|PTHR11476:SF5|SSF55681
ALIDE_RS15085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR019201	Protein of unknown function DUF2065		PF09838
ALIDE_RS15090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001107|IPR001972|IPR010200	Band 7 domain|HflC|Stomatin family	GO:0016020|GO:0016021|GO:0052547	PF01145|PIRSF005651|PTHR10264|PTHR10264:SF80|SM00244|SSF117892|TIGR01932
ALIDE_RS15095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001107|IPR001972|IPR010201|IPR020980	Band 7 domain|HflK|Menbrane protein HflK, N-terminal|Stomatin family	GO:0016020|GO:0016021	PF01145|PF12221|PTHR10264|PTHR10264:SF51|SM00244|SSF117892|TIGR01933
ALIDE_RS15100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006073|IPR016496|IPR025121|IPR027417|IPR032305	GTP binding domain|GTP-binding protein, middle domain|GTPase HflX|GTPase HflX, N-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005525	G3DSA:3.40.50.300|MF_00900|PF01926|PF13167|PF16360|PIRSF006809|PR00326|PTHR10229|PTHR10229:SF0|SSF52540|TIGR03156
ALIDE_RS15105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005001|IPR010920	LSM domain|RNA-binding protein Hfq	GO:0003723|GO:0006355	G3DSA:2.30.30.100|MF_00436|PTHR34772|PTHR34772:SF1|SSF50182|TIGR02383
ALIDE_RS15110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005225|IPR006073|IPR015946|IPR016484|IPR027417|IPR032859	GTP binding domain|GTP-binding protein EngA|GTPase Der, C-terminal KH-domain-like|K homology domain-like, alpha/beta|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain	GO:0005525	G3DSA:3.30.300.20|G3DSA:3.40.50.300|MF_00195|PF01926|PF14714|PIRSF006485|PR00326|PTHR11649|PTHR11649:SF5|SSF52540|TIGR00231|TIGR03594
ALIDE_RS15115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002372|IPR011047|IPR017687|IPR018391|IPR027295	Outer membrane protein assembly factor BamB|Pyrrolo-quinoline quinone beta-propeller repeat|Pyrrolo-quinoline quinone repeat|Quinoprotein alcohol dehydrogenase-like domain|Quinoprotein alcohol dehydrogenase-like superfamily		G3DSA:2.140.10.10|MF_00923|PF13360|PTHR34512|PTHR34512:SF1|SM00564|SSF50998|TIGR03300
ALIDE_RS15120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018704|IPR026039	Tetratricopeptide repeat-like domain|Uncharacterised protein family UPF0070		PF09976|PIRSF006170|PTHR38035
ALIDE_RS15125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004154|IPR004516|IPR015807	Anticodon-binding|Histidine-tRNA ligase|Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit	GO:0004821|GO:0005524|GO:0005737|GO:0006427	G3DSA:3.30.930.10|G3DSA:3.40.50.800|MF_00127|PF03129|PF13393|PIRSF001549|PTHR11476|PTHR11476:SF9|SSF52954|SSF55681|TIGR00442
ALIDE_RS15130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004588|IPR016425	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type	GO:0005506|GO:0008299|GO:0016114|GO:0046429|GO:0055114	MF_00159|PF04551|PIRSF004640|PTHR30454|SSF56014|TIGR00612
ALIDE_RS15135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982|IPR025194	Domain of unknown function DUF4115|Lambda repressor-like, DNA-binding domain	GO:0003677	G3DSA:1.10.260.40|PF13413|PF13464|PTHR34475|PTHR34475:SF1
ALIDE_RS15140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011990|IPR013360|IPR019734	Pilus biogenesis/stability type IV, PilW|Tetratricopeptide repeat|Tetratricopeptide-like helical domain	GO:0005515	G3DSA:1.25.40.10|PF13432|PF14559|PTHR23083|SM00028|SSF48452|TIGR02521
ALIDE_RS15145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004383|IPR007197|IPR023404|IPR027492	Dual-specificity RNA methyltransferase RlmN|Radical SAM|Radical SAM, alpha/beta horseshoe|Ribosomal RNA large subunit methyltransferase RlmN/Cfr	GO:0003824|GO:0005737|GO:0006364|GO:0008173|GO:0030488|GO:0051536|GO:0070475	G3DSA:3.80.30.20|MF_01849|PF04055|PIRSF006004|PTHR30544|PTHR30544:SF5|SSF102114|TIGR00048
ALIDE_RS15150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001564	Nucleoside diphosphate kinase	GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241	G3DSA:3.30.70.141|MF_00451|PF00334|PR01243|PTHR11349|SM00562|SSF54919
ALIDE_RS15155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000748|IPR002942|IPR006145|IPR018496|IPR020103	Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, RsuA/RluB/E/F|Pseudouridine synthase, RsuA/RluB/E/F, conserved site|Pseudouridine synthase, catalytic domain|RNA-binding S4 domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982|GO:0016866	G3DSA:3.10.290.10|PF00849|PF01479|PS01149|PTHR21600|PTHR21600:SF2|SM00363|SSF55120|SSF55174|TIGR00093
ALIDE_RS15160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005234|IPR011991	Chromosome segregation/condensation protein ScpB|Winged helix-turn-helix DNA-binding domain	GO:0051304	G3DSA:1.10.10.10|PF04079|PTHR34298|PTHR34298:SF2|SSF46785|TIGR00281
ALIDE_RS15165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002942|IPR006145|IPR006224|IPR006225|IPR020103	Pseudouridine synthase, RluC/RluD|Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain|RNA-binding S4 domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982	G3DSA:3.10.290.10|PF00849|PF01479|PS01129|PTHR11079|PTHR11079:SF73|SM00363|SSF55120|SSF55174|TIGR00005
ALIDE_RS15170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011055|IPR016047|IPR018392	Duplicated hybrid motif|LysM domain|Peptidase M23		G3DSA:2.70.70.10|G3DSA:3.10.350.10|PF01476|PF01551|PTHR21666|PTHR21666:SF222|SM00257|SSF51261
ALIDE_RS15175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000682|IPR029063	Protein-L-isoaspartate(D-aspartate) O-methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase	GO:0004719|GO:0006464	G3DSA:3.40.50.150|PF01135|PTHR11579|SSF53335|TIGR00080
ALIDE_RS15180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002828|IPR030048	Survival protein SurE|Survival protein SurE-like phosphatase/nucleotidase	GO:0008252|GO:0016787	G3DSA:3.40.1210.10|MF_00060|PF01975|PTHR30457|SSF64167|TIGR00087
ALIDE_RS15185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR029787	GGDEF domain|Nucleotide cyclase		G3DSA:3.30.70.270|PF00990|PTHR10799|PTHR10799:SF710|SM00267|SSF55073|TIGR00254
ALIDE_RS15190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018946|IPR029052|IPR032093	Alkaline phosphatase D-related|Metallo-dependent phosphatase-like|Phospholipase D, N-terminal		G3DSA:3.60.21.10|PF09423|PF16655|PTHR22953|PTHR22953:SF28|SSF56300
ALIDE_RS15195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30126|PTHR30126:SF33|SSF46785|SSF53850
ALIDE_RS15200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000262|IPR008259|IPR012133|IPR013785	Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent alpha-hydroxy acid dehydrogenase, active site|FMN-dependent dehydrogenase	GO:0003824|GO:0010181|GO:0016491|GO:0055114	G3DSA:3.20.20.70|PF01070|PIRSF000138|PS00557|PTHR10578|PTHR10578:SF65|SSF51395
ALIDE_RS15205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS15220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011234	Fumarylacetoacetase, C-terminal-related	GO:0003824|GO:0008152	G3DSA:3.90.850.10|PF01557|PTHR11820|PTHR11820:SF71|SSF56529
ALIDE_RS15225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR015893	DNA-binding HTH domain, TetR-type|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal	GO:0003677	G3DSA:1.10.357.10|PF00440|PR00455|PTHR30055|SSF46689
ALIDE_RS15230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000432|IPR005748|IPR007695|IPR007696|IPR007860|IPR007861|IPR016151|IPR027417	DNA mismatch repair protein MutS, C-terminal|DNA mismatch repair protein MutS, N-terminal|DNA mismatch repair protein MutS, clamp|DNA mismatch repair protein MutS, connector domain|DNA mismatch repair protein MutS, core|DNA mismatch repair protein MutS, type 1|DNA mismatch repair protein MutS-like, N-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0006298|GO:0030983	G3DSA:1.10.1420.10|G3DSA:3.30.420.110|G3DSA:3.40.1170.10|G3DSA:3.40.50.300|MF_00096|PF00488|PF01624|PF05188|PF05190|PF05192|PIRSF037677|PS00486|PTHR11361|PTHR11361:SF86|SM00533|SM00534|SSF48334|SSF52540|SSF53150|SSF55271|TIGR01070
ALIDE_RS15235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423|IPR010131	Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT	GO:0005215|GO:0006810|GO:0008289|GO:0016020	G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|PTHR30203|PTHR30203:SF7|SSF56954|TIGR01845
ALIDE_RS15240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR027463	Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0016020	G3DSA:1.10.3850.10|G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF34|SSF82693|SSF82714|SSF82866
ALIDE_RS15245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR027463	Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0016020	G3DSA:1.10.3850.10|G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|G3DSA:3.30.70.1440|PF00873|PR00702|PTHR32063|PTHR32063:SF21|SSF82693|SSF82714|SSF82866
ALIDE_RS15250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR022824|IPR032317	Multidrug resistance protein MdtA|RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF16576|PTHR30469|PTHR30469:SF12|SSF111369|TIGR01730
ALIDE_RS15255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1		G3DSA:3.40.50.1820|PF12697|PTHR10992|SSF53474
ALIDE_RS15260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003824	Undecaprenyl-diphosphatase UppP	GO:0016020|GO:0016311|GO:0050380	MF_01006|PF02673|PTHR30622|PTHR30622:SF3|TIGR00753
ALIDE_RS15270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025698	2TM domain		PF13239
ALIDE_RS15275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR010559	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, internal region	GO:0000155|GO:0000160|GO:0016021	G3DSA:3.30.565.10|PF06580|PTHR34220|SSF55874
ALIDE_RS15280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR007492|IPR011006	CheY-like superfamily|LytTR DNA-binding domain|Signal transduction response regulator, receiver domain	GO:0000160|GO:0003677	G3DSA:2.40.50.40|G3DSA:3.40.50.2300|PF00072|PF04397|PTHR26402|PTHR26402:SF524|SM00448|SM00850|SSF52172
ALIDE_RS15285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23534|SSF103473
ALIDE_RS15290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23512|PTHR23512:SF1|SSF103473
ALIDE_RS15295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002938|IPR023753	FAD-binding domain|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114|GO:0071949	G3DSA:3.50.50.60|PF01494|PR00420|PTHR13789|PTHR13789:SF186|SSF51905|SSF54373
ALIDE_RS15300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000573|IPR001030|IPR015928|IPR015931|IPR015932|IPR015937|IPR018136	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase family, 4Fe-4S cluster binding site|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/isopropylmalate dehydratase	GO:0008152	G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PF00694|PR00415|PS00450|PS01244|PTHR11670|PTHR11670:SF1|SSF52016|SSF53732
ALIDE_RS15305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001801|IPR027444	Histone-like protein H-NS|Histone-like protein H-NS, C-terminal domain	GO:0003677|GO:0005622|GO:0006355	G3DSA:4.10.430.10|PF00816|SM00528|SSF81273
ALIDE_RS15310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004617|IPR004843|IPR029052	Bis(5'-nucleosyl)-tetraphosphatase (symmetrical)|Calcineurin-like phosphoesterase domain, apaH type|Metallo-dependent phosphatase-like	GO:0008803|GO:0016787	G3DSA:3.60.21.10|MF_00199|PF00149|PIRSF000903|PTHR24032|PTHR24032:SF27|SSF56300|TIGR00668
ALIDE_RS15315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003374|IPR024932	ApbE-like domain|Flavin transferase ApbE	GO:0017013	PF02424|PIRSF006268|PTHR30040|PTHR30040:SF2|SSF143631
ALIDE_RS15320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002323|IPR009056	Cytochrome c, class IE|Cytochrome c-like domain	GO:0005506|GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF13442|PR00607|PTHR40942|PTHR40942:SF1|SSF46626
ALIDE_RS15330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008972|IPR011045|IPR015943|IPR023644|IPR028096	Cupredoxin|EfeO-type cupredoxin-like domain|Nitrous oxide reductase, N-terminal|Nitrous-oxide reductase|WD40/YVTN repeat-like-containing domain	GO:0005507|GO:0005509|GO:0005515|GO:0050304|GO:0055114	G3DSA:2.130.10.10|G3DSA:2.60.40.420|PF13473|PTHR22888|PTHR22888:SF3|SSF49503|SSF50974|TIGR04244
ALIDE_RS15335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007329|IPR017896|IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|FMN-binding	GO:0010181|GO:0016020	G3DSA:3.30.70.20|PF04205|PF12801|PS00198|PTHR30224|PTHR30224:SF4|SM00900|SSF54862
ALIDE_RS15340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006626|IPR006633|IPR007742|IPR011050|IPR012334|IPR022441|IPR026464	Carbohydrate-binding/sugar hydrolysis domain|Nitrous oxide reductase family maturation protein NosD|Parallel beta-helix repeat|Parallel beta-helix repeat-2|Pectin lyase fold|Pectin lyase fold/virulence factor|Periplasmic copper-binding protein NosD, beta helix domain		G3DSA:2.160.20.10|PF05048|SM00710|SM00722|SSF51126|TIGR03804|TIGR04247
ALIDE_RS15345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF595|SM00382|SSF52540
ALIDE_RS15350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032688	ABC-2 family transporter protein	GO:0006810	PF12679|PTHR30294|PTHR30294:SF26
ALIDE_RS15355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008719	Nitrous oxide reductase accessory protein NosL		PF05573|PTHR41247|SSF160387
ALIDE_RS15360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008719	Nitrous oxide reductase accessory protein NosL		PF05573|PTHR41247|SSF160387
ALIDE_RS15365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000629|IPR001650|IPR011545|IPR014001|IPR027417	ATP-dependent RNA helicase DEAD-box, conserved site|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0003676|GO:0005524	G3DSA:3.40.50.300|PF00270|PF00271|PS00039|PTHR24031|PTHR24031:SF0|SM00487|SM00490|SSF52540
ALIDE_RS15370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007343	Uncharacterised protein family, zinc metallopeptidase putative		PF04228|PTHR30168|SSF55486
ALIDE_RS15375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008180|IPR011962|IPR029054	Deoxycytidine triphosphate deaminase|Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase|dUTPase-like	GO:0006229|GO:0008829|GO:0016787|GO:0046080	G3DSA:2.70.40.10|MF_00146|PF00692|PTHR11241|PTHR11241:SF1|SSF51283|TIGR02274
ALIDE_RS15380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009056|IPR010389	Cytochrome c-like domain|Domain of unknown function DUF989	GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF06181|SSF46626
ALIDE_RS15385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003777|IPR014308|IPR027051	Xanthine dehydrogenase accessory protein XdhC|XdhC Rossmann domain|XdhC- CoxI		PF02625|PF13478|PTHR30388|PTHR30388:SF5|TIGR02964
ALIDE_RS15395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000895|IPR014306|IPR023416|IPR023418|IPR023419	Hydroxyisourate hydrolase|Transthyretin, conserved site|Transthyretin, thyroxine binding site|Transthyretin/hydroxyisourate hydrolase|Transthyretin/hydroxyisourate hydrolase, superfamily	GO:0006144|GO:0033971	G3DSA:2.60.40.180|PF00576|PR00189|PS00768|PS00769|PTHR10395|PTHR10395:SF7|SSF49472|TIGR02962
ALIDE_RS15400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000101|IPR029055	Gamma-glutamyltranspeptidase|Nucleophile aminohydrolases, N-terminal	GO:0003840|GO:0006749	PF01019|PR01210|PS00462|PTHR11686|PTHR11686:SF9|SSF56235|TIGR00066
ALIDE_RS15410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006115|IPR006398|IPR008927|IPR013328|IPR015815|IPR016040|IPR029154	2-hydroxy-3-oxopropionate reductase|3-hydroxyisobutyrate dehydrogenase, NAD-binding domain|3-hydroxyisobutyrate dehydrogenase-related|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0004616|GO:0008679|GO:0016491|GO:0046487|GO:0051287|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PF14833|PIRSF000103|PTHR22981|PTHR22981:SF70|SSF48179|SSF51735|TIGR01505
ALIDE_RS15415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013022|IPR017643|IPR026040	Hydroxypyruvate isomerase|Hydroxypyruvate isomerase-like|Xylose isomerase-like, TIM barrel domain		G3DSA:3.20.20.150|PF01261|PIRSF006241|PTHR12110|PTHR12110:SF12|SSF51658|TIGR03234
ALIDE_RS15420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006397|IPR011766|IPR012000|IPR012001|IPR029035|IPR029061	DHS-like NAD/FAD-binding domain|Glyoxylate carboligase|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain|Thiamine pyrophosphate enzyme, central domain	GO:0000287|GO:0003824|GO:0009028|GO:0009436|GO:0030976	G3DSA:3.40.50.1220|G3DSA:3.40.50.970|PF00205|PF02775|PF02776|PTHR18968|PTHR18968:SF14|SSF52467|SSF52518|TIGR01504
ALIDE_RS15425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF5|SSF46785|SSF53850
ALIDE_RS15430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001638	Solute-binding protein  family 3/N-terminal domain of MltF		G3DSA:3.40.190.10|PF00497|PTHR30085|PTHR30085:SF2|SM00062|SSF53850
ALIDE_RS15435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005814|IPR015421|IPR015422|IPR015424	Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0008483|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00202|PS00600|PTHR11986|PTHR11986:SF87|SSF53383
ALIDE_RS15440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|PTHR30126:SF2|SSF46785|SSF53850
ALIDE_RS15445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007835|IPR025286	MOFRL domain|MOFRL-associated domain		G3DSA:3.40.1480.10|G3DSA:3.40.50.10180|PF05161|PF13660|PTHR12227|PTHR12227:SF0|SSF82544
ALIDE_RS15450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS15455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001804|IPR011829|IPR019818|IPR024084	Isocitrate and isopropylmalate dehydrogenases family|Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase-like domain|Tartrate dehydrogenase	GO:0000287|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.718.10|PF00180|PS00470|PTHR11835|PTHR11835:SF33|SM01329|SSF53659|TIGR02089
ALIDE_RS15460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF5|SSF46785|SSF53850
ALIDE_RS15465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PTHR11751|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS15470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002509|IPR011330|IPR017625	Glycoside hydrolase/deacetylase, beta/alpha-barrel|NodB homology domain|Putative urate catabolism protein	GO:0003824|GO:0005975|GO:0016810	G3DSA:3.20.20.370|PF01522|PTHR10587|PTHR10587:SF72|SSF88713|TIGR03212
ALIDE_RS15475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002933|IPR010158|IPR011650|IPR017580|IPR018020	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1|Amidase, hydantoinase/carbamoylase|Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase|Peptidase M20|Peptidase M20, dimerisation domain	GO:0008152|GO:0016787|GO:0016813|GO:0019428	G3DSA:1.10.3330.10|G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF09349|PTHR32494|SSF158694|SSF53187|SSF55031|TIGR01879|TIGR03164
ALIDE_RS15480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001261|IPR002933|IPR011650	ArgE/DapE/ACY1/CPG2/YscS, conserved site|Peptidase M20|Peptidase M20, dimerisation domain	GO:0006508|GO:0008152|GO:0008237|GO:0016787	G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PS00758|PTHR11014|SSF53187|SSF55031
ALIDE_RS15485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001633	EAL domain		G3DSA:3.20.20.450|PF00563|PTHR33121|PTHR33121:SF10|SSF141868
ALIDE_RS15490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001633	EAL domain		G3DSA:3.20.20.450
ALIDE_RS15500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004089|IPR004090	Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain	GO:0004871|GO:0006935|GO:0007165|GO:0016020	G3DSA:1.10.287.950|PF00015|PR00260|PTHR32089|PTHR32089:SF63|SM00283|SSF58104
ALIDE_RS15505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006042|IPR006043	Xanthine/uracil permease|Xanthine/uracil/vitamin C permease	GO:0005215|GO:0006810|GO:0016020|GO:0055085	PF00860|PTHR11119|PTHR11119:SF3|TIGR00801
ALIDE_RS15510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002505|IPR012188|IPR012301|IPR012302|IPR016040	Malic enzyme, N-terminal domain|Malic enzyme, NAD-binding|Malic enzyme, phosphate acetyl/butaryl transferase|NAD(P)-binding domain|Phosphate acetyl/butaryl transferase	GO:0004471|GO:0004473|GO:0005829|GO:0006108|GO:0008152|GO:0016616|GO:0016746|GO:0030145|GO:0046872|GO:0051287|GO:0055114	G3DSA:3.40.50.10380|G3DSA:3.40.50.10750|G3DSA:3.40.50.720|PF00390|PF01515|PF03949|PIRSF036684|PTHR23406|PTHR23406:SF23|SM00919|SM01274|SSF51735|SSF53223|SSF53659
ALIDE_RS15515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007372	Lipid/polyisoprenoid-binding, YceI-like		G3DSA:2.40.128.110|PF04264|PTHR34406|PTHR34406:SF1|SM00867|SSF101874
ALIDE_RS15520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007372	Lipid/polyisoprenoid-binding, YceI-like		G3DSA:2.40.128.110|PF04264|PTHR34406|PTHR34406:SF1|SM00867|SSF101874
ALIDE_RS15525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011577|IPR016174	Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane	GO:0009055|GO:0016020|GO:0016021|GO:0022904	G3DSA:1.20.950.20|PF01292|PTHR30529|PTHR30529:SF5|SSF81342
ALIDE_RS15530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR024513|IPR028976	CheC-like domain|Protein of unknown function DUF3334		G3DSA:3.40.1550.10|PF11813|SSF103039
ALIDE_RS15535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000866|IPR012336|IPR024706	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant|Peroxiredoxin, AhpC-type|Thioredoxin-like fold	GO:0016209|GO:0016491|GO:0055114	G3DSA:3.40.30.10|PF00578|PIRSF000239|PTHR10681|SSF52833
ALIDE_RS15540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002716|IPR003714|IPR027417|IPR029060	P-loop containing nucleoside triphosphate hydrolase|PIN domain|PIN domain-like|PhoH-like protein	GO:0005524	G3DSA:3.40.50.1010|G3DSA:3.40.50.300|PF02562|PF13638|PTHR30473|PTHR30473:SF2|SM00670|SSF52540|SSF88723
ALIDE_RS15545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00687|PTHR11699|PTHR11699:SF144|SSF53720
ALIDE_RS15550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR007692|IPR007693|IPR007694|IPR016136|IPR027417	AAA+ ATPase domain|DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal|DNA helicase, DnaB type|DNA helicase, DnaB-like, C-terminal|DNA helicase, DnaB-like, N-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0003677|GO:0003678|GO:0005524|GO:0006260	G3DSA:1.10.860.10|G3DSA:3.40.50.300|PF00772|PF03796|PTHR30153|SM00382|SSF48024|SSF52540|TIGR00665
ALIDE_RS15555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000244|IPR009027|IPR020069|IPR020070|IPR020594	Ribosomal protein L9|Ribosomal protein L9, C-terminal|Ribosomal protein L9, N-terminal|Ribosomal protein L9, bacteria/chloroplast|Ribosomal protein L9/RNase H1, N-terminal	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:3.10.430.100|G3DSA:3.40.5.10|MF_00503|PF01281|PF03948|PS00651|PTHR21368|SSF55653|SSF55658|TIGR00158
ALIDE_RS15560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001648	Ribosomal protein S18	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:4.10.640.10|MF_00270|PD002239|PF01084|PR00974|PTHR13479|SSF46911|TIGR00165
ALIDE_RS15565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012340|IPR023646	Nucleic acid-binding, OB-fold|Primosomal replication protein PriB	GO:0003697|GO:0006260|GO:0030894	G3DSA:2.40.50.140|PIRSF003135|SSF50249|TIGR04418
ALIDE_RS15570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000529|IPR014717|IPR020814|IPR020815	Ribosomal protein S6|Ribosomal protein S6, conserved site|Ribosomal protein S6, plastid/chloroplast|Translation elongation factor EF1B/ribosomal protein S6	GO:0003735|GO:0005840|GO:0006412|GO:0019843	G3DSA:3.30.70.60|MF_00360|PF01250|PS01048|PTHR21011|PTHR21011:SF1|SSF54995|TIGR00166
ALIDE_RS15575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000740|IPR009012|IPR013805	GrpE nucleotide exchange factor|GrpE nucleotide exchange factor, coiled-coil|GrpE nucleotide exchange factor, head	GO:0000774|GO:0006457|GO:0042803|GO:0051087	G3DSA:2.30.22.10|G3DSA:3.90.20.20|MF_01151|PF01025|PR00773|PS01071|PTHR21237|SSF51064|SSF58014
ALIDE_RS15580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012725|IPR013126|IPR018181|IPR029047|IPR029048	Chaperone DnaK|Heat shock protein 70 family|Heat shock protein 70, conserved site|Heat shock protein 70kD, C-terminal domain|Heat shock protein 70kD, peptide-binding domain	GO:0005524|GO:0006457|GO:0051082	G3DSA:1.20.1270.10|G3DSA:2.60.34.10|G3DSA:3.30.30.30|G3DSA:3.30.420.40|G3DSA:3.90.640.10|MF_00332|PF00012|PR00301|PS00297|PS00329|PS01036|PTHR19375|PTHR19375:SF173|SSF100920|SSF100934|SSF53067|TIGR02350
ALIDE_RS15585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001305|IPR001623|IPR002939|IPR008971|IPR012724|IPR018253	Chaperone DnaJ|Chaperone DnaJ, C-terminal|DnaJ domain|DnaJ domain, conserved site|HSP40/DnaJ peptide-binding|Heat shock protein DnaJ, cysteine-rich domain	GO:0005524|GO:0006457|GO:0009408|GO:0031072|GO:0051082	G3DSA:1.10.287.110|G3DSA:2.10.230.10|G3DSA:2.60.260.20|MF_01152|PF00226|PF00684|PF01556|PR00625|PS00636|PTHR24078|PTHR24078:SF190|SM00271|SSF46565|SSF49493|SSF57938|TIGR02349
ALIDE_RS15590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013424	PEP-CTERM protein-sorting domain		PF07589|TIGR02595
ALIDE_RS15595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001597|IPR011166|IPR015421|IPR015422|IPR015424|IPR018176	Aromatic amino acid beta-eliminating lyase/threonine aldolase|Beta-eliminating lyase family|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2|Tryptophanase, conserved site	GO:0003824|GO:0006520|GO:0009072|GO:0016829|GO:0016830	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01212|PIRSF001386|PS00853|PTHR32325|SSF53383
ALIDE_RS15600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001539	Peptidase U32	GO:0006508|GO:0008233	PF01136|PS01276|PTHR30217|PTHR30217:SF3
ALIDE_RS15605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001539	Peptidase U32	GO:0006508|GO:0008233	PF01136|PTHR30217|PTHR30217:SF8
ALIDE_RS15610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003033	SCP2 sterol-binding domain		G3DSA:3.30.1050.10|PF02036|PTHR10094|PTHR10094:SF16|SSF55718
ALIDE_RS15615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014958	DGC		PF08859|PIRSF037181
ALIDE_RS15620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003382|IPR004507	Flavin prenyltransferase UbiX/Pad1|Flavoprotein	GO:0003824	G3DSA:3.40.50.1950|MF_01984|PF02441|PTHR30108|PTHR30108:SF10|SSF52507|TIGR00421
ALIDE_RS15625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002830|IPR012349	FMN-binding split barrel|UbiD decarboxylyase family	GO:0010181|GO:0016491|GO:0016831|GO:0055114	G3DSA:1.20.5.570|G3DSA:3.40.1670.10|PF01977|PTHR30108|PTHR30108:SF1|SSF143968|SSF50475|TIGR00148
ALIDE_RS15630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001128|IPR002397	Cytochrome P450|Cytochrome P450, B-class	GO:0005506|GO:0016705|GO:0020037|GO:0055114	G3DSA:1.10.630.10|PF00067|PR00359|PTHR11712|SSF48264
ALIDE_RS15635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001279|IPR011108|IPR022712	Beta-Casp domain|Metallo-beta-lactamase|Zn-dependent metallo-hydrolase, RNA specificity domain		G3DSA:3.60.15.10|PF00753|PF07521|PF10996|PTHR11203|PTHR11203:SF11|SM00849|SM01027|SSF56281
ALIDE_RS15640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS15645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001030|IPR004430|IPR015931|IPR015932|IPR015937|IPR018136	3-isopropylmalate dehydratase, large subunit|Aconitase family, 4Fe-4S cluster binding site|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2|Aconitase/isopropylmalate dehydratase	GO:0003861|GO:0008152|GO:0009098|GO:0051539	G3DSA:3.30.499.10|G3DSA:3.40.1060.10|MF_01026|PF00330|PR00415|PS00450|PS01244|PTHR11670|PTHR11670:SF38|SSF53732|TIGR00170
ALIDE_RS15650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012556	Entericidin A/B	GO:0009636|GO:0016020	PF08085
ALIDE_RS15655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000573|IPR004431|IPR015928|IPR015937	3-isopropylmalate dehydratase, small subunit|Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/isopropylmalate dehydratase	GO:0003861|GO:0008152|GO:0009098|GO:0009316	G3DSA:3.20.19.10|MF_01031|PF00694|PTHR11670|PTHR11670:SF27|SSF52016|TIGR00171
ALIDE_RS15660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001804|IPR004429|IPR019818|IPR024084	Isocitrate and isopropylmalate dehydrogenases family|Isocitrate/isopropylmalate dehydrogenase, conserved site|Isopropylmalate dehydrogenase|Isopropylmalate dehydrogenase-like domain	GO:0000287|GO:0003862|GO:0005737|GO:0009098|GO:0016616|GO:0051287|GO:0055114	G3DSA:3.40.718.10|MF_01033|PF00180|PS00470|PTHR11835|PTHR11835:SF35|SM01329|SSF53659|TIGR00169
ALIDE_RS15665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000319|IPR000534|IPR011534|IPR012080|IPR012280|IPR016040	Aspartate-semialdehyde dehydrogenase|Aspartate-semialdehyde dehydrogenase, conserved site|Aspartate-semialdehyde dehydrogenase, gamma-type|NAD(P)-binding domain|Semialdehyde dehydrogenase, NAD-binding|Semialdehyde dehydrogenase, dimerisation domain	GO:0003942|GO:0004073|GO:0005737|GO:0006520|GO:0008652|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0016620|GO:0046983|GO:0050661|GO:0051287|GO:0055114	G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_02121|PF01118|PF02774|PIRSF000148|PS01103|PTHR10174|PTHR10174:SF116|SM00859|SSF51735|SSF55347|TIGR01745
ALIDE_RS15670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR020011|IPR020012	Motility protein FimV, C-terminal|Motility protein FimV, N-terminal		TIGR03504|TIGR03505
ALIDE_RS15675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001406|IPR020094|IPR020095|IPR020097|IPR020103	Pseudouridine synthase I, TruA|Pseudouridine synthase I, TruA, C-terminal|Pseudouridine synthase I, TruA, N-terminal|Pseudouridine synthase I, TruA, alpha/beta domain|Pseudouridine synthase, catalytic domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982	G3DSA:3.30.70.580|G3DSA:3.30.70.660|MF_00171|PF01416|PIRSF001430|PTHR11142|SSF55120|TIGR00071
ALIDE_RS15680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001240|IPR011060|IPR013785	Aldolase-type TIM barrel|N-(5'phosphoribosyl) anthranilate isomerase (PRAI)|Ribulose-phosphate binding barrel	GO:0003824|GO:0004640|GO:0006568|GO:0008152	G3DSA:3.20.20.70|MF_00135|PF00697|PTHR22854|PTHR22854:SF6|SSF51366
ALIDE_RS15685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001926|IPR006653|IPR006654|IPR023026	Tryptophan synthase beta chain/beta chain-like|Tryptophan synthase beta subunit-like PLP-dependent enzyme|Tryptophan synthase, beta chain|Tryptophan synthase, beta chain, conserved site	GO:0000162|GO:0004834|GO:0006568	G3DSA:3.40.50.1100|MF_00133|PF00291|PIRSF001413|PS00168|PTHR10314|PTHR10314:SF3|SSF53686|TIGR00263
ALIDE_RS15690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002028|IPR011060|IPR013785|IPR018204	Aldolase-type TIM barrel|Ribulose-phosphate binding barrel|Tryptophan synthase, alpha chain|Tryptophan synthase, alpha chain, active site	GO:0003824|GO:0004834|GO:0006568|GO:0008152	G3DSA:3.20.20.70|MF_00131|PF00290|PS00167|PTHR10314|PTHR10314:SF4|SSF51366|TIGR00262
ALIDE_RS15695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000022|IPR000438|IPR029045	Acetyl-CoA carboxylase carboxyl transferase, beta subunit|Carboxyl transferase|ClpP/crotonase-like domain	GO:0003989|GO:0006633|GO:0009317	G3DSA:3.90.226.10|MF_01395|PF01039|PR01070|PTHR22855|PTHR22855:SF17|SSF52096|TIGR00515
ALIDE_RS15700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003425	CCB3/YggT	GO:0016020	PF02325|PTHR33219|PTHR33219:SF5
ALIDE_RS15705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003111|IPR015947	ATP-dependent protease La (LON), substrate-binding domain|PUA-like domain	GO:0004176|GO:0006508	PF02190|PTHR23327|PTHR23327:SF0|SM00464|SSF88697
ALIDE_RS15710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003869|IPR016040	NAD(P)-binding domain|Polysaccharide biosynthesis protein, CapD-like domain		G3DSA:3.40.50.720|G3DSA:3.90.25.10|PF02719|PF13727|PTHR10366|PTHR10366:SF256|SSF51735
ALIDE_RS15715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF13440
ALIDE_RS15720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001451|IPR011004	Hexapeptide repeat|Trimeric LpxA-like		G3DSA:2.160.10.10|PF00132|PTHR23416|PTHR23416:SF23|SSF51161
ALIDE_RS15725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028098	Glycosyltransferase subfamily 4-like, N-terminal domain		G3DSA:3.40.50.2000|PF13477|PF13692|PTHR12526|SSF53756
ALIDE_RS15730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001173|IPR029044	Glycosyltransferase 2-like|Nucleotide-diphospho-sugar transferases		G3DSA:3.90.550.10|PF00535|PTHR22916|SSF53448
ALIDE_RS15735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF13649|SSF53335
ALIDE_RS15740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000653|IPR015421|IPR015422|IPR015424	DegT/DnrJ/EryC1/StrS aminotransferase|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF01041|PIRSF000390|PTHR30244|PTHR30244:SF3|SSF53383
ALIDE_RS15745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003362	Bacterial sugar transferase		PF02397|PTHR30576
ALIDE_RS15750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002313|IPR004364|IPR004365|IPR012340|IPR018149|IPR018150	Aminoacyl-tRNA synthetase, class II (D/K/N)|Aminoacyl-tRNA synthetase, class II (D/K/N)-like|Lysine-tRNA ligase, class II|Lysyl-tRNA synthetase, class II, C-terminal|Nucleic acid-binding, OB-fold|OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	GO:0000166|GO:0003676|GO:0004812|GO:0004824|GO:0005524|GO:0005737|GO:0006418|GO:0006430	G3DSA:2.40.50.140|G3DSA:3.30.930.10|MF_00252|PF00152|PF01336|PR00982|PTHR22594|PTHR22594:SF4|SSF50249|SSF55681|TIGR00499
ALIDE_RS15755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006685|IPR010920	LSM domain|Mechanosensitive ion channel MscS	GO:0016020|GO:0055085	G3DSA:2.30.30.60|PF00924|PTHR30221|PTHR30221:SF8|SSF50182
ALIDE_RS15760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000709|IPR028081|IPR028082	Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I	GO:0006865	G3DSA:3.40.50.2300|PF13458|PR00337|PTHR30483|PTHR30483:SF12|SSF53822
ALIDE_RS15765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF371
ALIDE_RS15770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851|IPR021807	ABC transporter, permease|High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal	GO:0005215|GO:0006810|GO:0016020	PF02653|PF11862|PTHR30482|PTHR30482:SF9
ALIDE_RS15775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PTHR24220|PTHR24220:SF358|SM00382|SSF52540
ALIDE_RS15780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR030660	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|High-affinity branched-chain amino acid transport ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0015658|GO:0015803|GO:0016887	G3DSA:3.40.50.300|PF00005|PIRSF039137|PS00211|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS15785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000023|IPR012003|IPR012829|IPR022953	ATP-dependent 6-phosphofructokinase|ATP-dependent 6-phosphofructokinase, prokaryotic-type|Phosphofructokinase domain|Phosphofructokinase, mixed-substrate PFK group III	GO:0003872|GO:0005524|GO:0006002|GO:0006096|GO:0008443|GO:0047334	G3DSA:3.40.50.450|MF_01976|PF00365|PIRSF000532|PR00476|PTHR13697|SSF53784
ALIDE_RS15790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001764|IPR017853|IPR022956	Beta-hexosaminidase, bacterial|Glycoside hydrolase superfamily|Glycoside hydrolase, family 3, N-terminal	GO:0004553|GO:0004563|GO:0005975	G3DSA:3.20.20.300|MF_00364|PF00933|PTHR30480|PTHR30480:SF7|SSF51445
ALIDE_RS15795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002582|IPR004568|IPR008278	4'-phosphopantetheinyl transferase superfamily|Holo-[acyl carrier protein] synthase|Phosphopantetheine-protein transferase domain	GO:0000287|GO:0006633|GO:0008897	G3DSA:3.90.470.20|MF_00101|PD004282|PF01648|SSF56214|TIGR00516|TIGR00556
ALIDE_RS15800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004569|IPR013785	Aldolase-type TIM barrel|Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ	GO:0003824|GO:0005737|GO:0008615|GO:0033856	G3DSA:3.20.20.70|MF_00279|PF03740|PTHR30456|PTHR30456:SF0|SSF63892|TIGR00559
ALIDE_RS15805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003717|IPR012340|IPR022572	DNA replication/recombination mediator RecO, N-terminal|Nucleic acid-binding, OB-fold|Recombination protein O, RecO	GO:0006281|GO:0006310	G3DSA:2.40.50.140|MF_00201|PF02565|PF11967|PTHR33991|SSF50249|SSF57863|TIGR00613
ALIDE_RS15810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004044|IPR005225|IPR005662|IPR006073|IPR009019|IPR015946|IPR027417	GTP binding domain|GTP-binding protein Era|K Homology domain, type 2|K homology domain, prokaryotic type|K homology domain-like, alpha/beta|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain	GO:0003723|GO:0005525|GO:0005622	G3DSA:3.30.300.20|G3DSA:3.40.50.300|MF_00367|PF01926|PF07650|PR00326|PTHR11649|PTHR11649:SF3|SSF52540|SSF54814|TIGR00231|TIGR00436
ALIDE_RS15815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000999|IPR011907|IPR014720	Double-stranded RNA-binding domain|Ribonuclease III|Ribonuclease III domain	GO:0003723|GO:0004525|GO:0006396|GO:0016075	G3DSA:1.10.1520.10|G3DSA:3.30.160.20|MF_00104|PF00035|PF14622|PS00517|PTHR11207|SM00358|SM00535|SSF54768|SSF69065|TIGR02191
ALIDE_RS15820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032314	Protein of unknown function DUF4845		PF16137
ALIDE_RS15825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000223|IPR015927|IPR019533|IPR019756|IPR019757|IPR019758|IPR019759|IPR019766|IPR028360	Peptidase S24/S26, beta-ribbon domain|Peptidase S24/S26A/S26B|Peptidase S24/S26A/S26B/S26C|Peptidase S26|Peptidase S26A, all-beta subdomain|Peptidase S26A, signal peptidase I|Peptidase S26A, signal peptidase I, conserved site|Peptidase S26A, signal peptidase I, lysine active site|Peptidase S26A, signal peptidase I, serine active site	GO:0006508|GO:0008236|GO:0016020|GO:0016021	G3DSA:2.10.109.10|G3DSA:2.170.230.10|PF00717|PF10502|PR00727|PS00501|PS00760|PS00761|PTHR12383|PTHR12383:SF27|SSF51306|TIGR02227
ALIDE_RS15830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000640|IPR000795|IPR004161|IPR005225|IPR006297|IPR009000|IPR009022|IPR013842|IPR027417|IPR031157	Elongation factor 4|Elongation factor G, III-V domain|GTP-binding protein LepA, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|Tr-type G domain, conserved site|Transcription factor, GTP-binding domain|Translation elongation factor EFG, V domain|Translation elongation factor EFTu/EF1A, domain 2|Translation protein, beta-barrel domain	GO:0003924|GO:0005525	G3DSA:2.40.30.10|G3DSA:3.30.70.240|G3DSA:3.30.70.870|G3DSA:3.40.50.300|MF_00071|PF00009|PF00679|PF03144|PF06421|PR00315|PS00301|PTHR23115|PTHR23115:SF175|SM00838|SSF50447|SSF52540|SSF54980|TIGR00231|TIGR01393
ALIDE_RS15835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001478|IPR001940|IPR009003|IPR011782	PDZ domain|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do	GO:0004252|GO:0005515|GO:0006508	G3DSA:2.30.42.10|G3DSA:2.40.10.10|PF13180|PF13365|PR00834|PTHR22939|PTHR22939:SF98|SM00228|SSF50156|SSF50494|TIGR02037
ALIDE_RS15840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005588|IPR033434|IPR033436	MucB/RseB|MucB/RseB, C-terminal|MucB/RseB, N-terminal		G3DSA:2.50.20.10|PF03888|PF17188|PIRSF005427|PTHR38782|PTHR38782:SF1
ALIDE_RS15845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005572	Anti sigma-E protein RseA, N-terminal	GO:0016989	PF03872|SSF89069
ALIDE_RS15850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000838|IPR007627|IPR011991|IPR013249|IPR013324|IPR013325|IPR014284|IPR014286	RNA polymerase sigma factor 70, ECF, conserved site|RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70 RpoE type|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987	G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|PS01063|PTHR30173|SSF88659|SSF88946|TIGR02937|TIGR02939
ALIDE_RS15860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014030|IPR014031|IPR016039|IPR017568|IPR018201|IPR020841	3-oxoacyl-[acyl-carrier-protein] synthase 2|Beta-ketoacyl synthase, C-terminal|Beta-ketoacyl synthase, N-terminal|Beta-ketoacyl synthase, active site|Polyketide synthase, beta-ketoacyl synthase domain|Thiolase-like	GO:0003824|GO:0006633|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00109|PF02801|PIRSF000447|PS00606|PTHR11712|SM00825|SSF53901|TIGR03150
ALIDE_RS15865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003231|IPR006162|IPR009081|IPR020806	Acyl carrier protein (ACP)|Phosphopantetheine attachment site|Phosphopantetheine binding ACP domain|Polyketide synthase, phosphopantetheine-binding domain	GO:0006633|GO:0031177	G3DSA:1.10.1200.10|MF_01217|PD000887|PF00550|PS00012|PTHR20863|SM00823|SSF47336|TIGR00517
ALIDE_RS15870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR011284|IPR016040|IPR020904	3-oxoacyl-(acyl-carrier-protein) reductase|NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0004316|GO:0006633|GO:0016491|GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24322|PTHR24322:SF635|SM00822|SSF51735|TIGR01830
ALIDE_RS15875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001227|IPR004410|IPR014043|IPR016035|IPR016036|IPR020801|IPR024925	Acyl transferase|Acyl transferase domain|Acyl transferase/acyl hydrolase/lysophospholipase|Malonyl CoA-acyl carrier protein transacylase|Malonyl CoA-acyl carrier protein transacylase, FabD-type|Malonyl-CoA ACP transacylase, ACP-binding|Polyketide synthase, acyl transferase domain	GO:0003824|GO:0004314|GO:0008152|GO:0016740	G3DSA:3.30.70.250|G3DSA:3.40.366.10|PF00698|PIRSF000446|PTHR10982|SM00827|SSF52151|SSF55048|TIGR00128
ALIDE_RS15880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004655|IPR013747|IPR013751|IPR016039	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III|3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal|3-oxoacyl-[acyl-carrier-protein] synthase 3|Thiolase-like	GO:0003824|GO:0004315|GO:0006633|GO:0008152	G3DSA:3.40.47.10|MF_01815|PF08541|PF08545|PTHR18919|PTHR18919:SF109|SSF53901|TIGR00747
ALIDE_RS15885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003664|IPR012281|IPR024084	Fatty acid synthesis PlsX protein|Isopropylmalate dehydrogenase-like domain|Phospholipid biosynthesis protein, PlsX-like	GO:0003824|GO:0006633|GO:0016616|GO:0016747|GO:0055114	G3DSA:3.40.718.10|MF_00019|PF02504|PIRSF002465|PTHR30100|PTHR30100:SF1|SSF53659|TIGR00182
ALIDE_RS15890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002677|IPR011332	Ribosomal protein L32p|Zinc-binding ribosomal protein	GO:0003735|GO:0006412|GO:0015934	MF_00340|PF01783|PTHR35534|SSF57829|TIGR01031
ALIDE_RS15895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003772	Protein of unknown function DUF177		PF02620|PTHR38099
ALIDE_RS15900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003697|IPR029001	Inosine triphosphate pyrophosphatase-like|Maf-like protein	GO:0005737	G3DSA:3.90.950.10|MF_00528|PF02545|PIRSF006305|PTHR11746|PTHR11746:SF102|SSF52972|TIGR00172
ALIDE_RS15905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000878|IPR014776	Tetrapyrrole methylase|Tetrapyrrole methylase, subdomain 2	GO:0008152|GO:0008168	G3DSA:3.30.950.10|PF00590|PTHR21091|PTHR21091:SF18|SSF53790
ALIDE_RS15910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002142|IPR029045	ClpP/crotonase-like domain|Peptidase S49	GO:0006508|GO:0008233	G3DSA:3.90.226.10|PF01343|PTHR30341|PTHR30341:SF1|SSF52096
ALIDE_RS15915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	GO:0016491|GO:0051537|GO:0055114	G3DSA:2.102.10.10|PF00355|PTHR40261|PTHR40261:SF2|SSF50022
ALIDE_RS15920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006439|IPR023198|IPR023214	HAD hydrolase, subfamily IA|HAD-like domain|Phosphoglycolate phosphatase, domain 2	GO:0008152|GO:0016787	G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|PTHR18901|PTHR18901:SF40|SSF56784|TIGR01509|TIGR01549
ALIDE_RS15925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002942|IPR006145|IPR006224|IPR006225|IPR020103	Pseudouridine synthase, RluC/RluD|Pseudouridine synthase, RluC/RluD, conserved site|Pseudouridine synthase, RsuA/RluB/C/D/E/F|Pseudouridine synthase, catalytic domain|RNA-binding S4 domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982	G3DSA:3.10.290.10|PF00849|PF01479|PS01129|PTHR11079|PTHR11079:SF84|SM00363|SSF55120|SSF55174|TIGR00005
ALIDE_RS15930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003029|IPR004659|IPR012340|IPR019307|IPR022967|IPR028878	Nucleic acid-binding, OB-fold|RNA-binding domain, S1|RNA-binding protein AU-1/Ribonuclease E/G|Ribonuclease E|Ribonuclease E/G|S1 domain	GO:0003676|GO:0003723|GO:0004540|GO:0006396|GO:0008995	G3DSA:2.40.50.140|MF_00970|PF00575|PF10150|PTHR30001|PTHR30001:SF1|SM00316|SSF50249|TIGR00757
ALIDE_RS15935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005583	Peroxide stress protein YaaA		MF_00652|PF03883|PTHR30283|PTHR30283:SF3
ALIDE_RS15940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005123|IPR006620	Oxoglutarate/iron-dependent dioxygenase|Prolyl 4-hydroxylase, alpha subunit	GO:0005506|GO:0016491|GO:0016705|GO:0031418|GO:0055114	PF13640|PTHR10869|SM00702
ALIDE_RS15945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016428|IPR029139|IPR029500	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF|NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal|NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2	GO:0005737|GO:0008616|GO:0033739|GO:0046857|GO:0055114	G3DSA:3.30.1130.10|MF_00817|PF14489|PF14819|PIRSF004750|PTHR34354|PTHR34354:SF1|SSF55620|TIGR03138
ALIDE_RS15950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR001610|IPR004089|IPR004090|IPR013655	Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain|PAC motif|PAS domain|PAS fold-3	GO:0004871|GO:0005515|GO:0006935|GO:0007165|GO:0016020	G3DSA:1.10.287.950|G3DSA:3.30.450.20|PF00015|PF08447|PR00260|PTHR32089|PTHR32089:SF63|SM00086|SM00283|SSF55785|SSF58104|TIGR00229
ALIDE_RS15955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001126|IPR017961|IPR022880|IPR024728	DNA polymerase IV|DNA polymerase type-Y, HhH motif|DNA polymerase, Y-family, little finger domain|UmuC domain	GO:0003684|GO:0003887|GO:0006281	G3DSA:1.10.150.20|G3DSA:3.30.1490.100|G3DSA:3.30.70.270|MF_01113|PF00817|PF11798|PF11799|PTHR11076|SSF100879|SSF56672
ALIDE_RS15960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|PTHR30346:SF0|SSF46785|SSF53850
ALIDE_RS15965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS15970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS15975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0055114	G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PS00073|PTHR10909|PTHR10909:SF262|SSF47203|SSF56645
ALIDE_RS15980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PTHR22911|PTHR22911:SF65|SSF103481
ALIDE_RS15985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000262|IPR008259|IPR012133|IPR013785	Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent alpha-hydroxy acid dehydrogenase, active site|FMN-dependent dehydrogenase	GO:0003824|GO:0010181|GO:0016491|GO:0055114	G3DSA:3.20.20.70|PF01070|PIRSF000138|PS00557|PTHR10578|PTHR10578:SF76|SSF51395
ALIDE_RS15990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006664|IPR006665	OmpA-like domain|Outer membrane protein, bacterial	GO:0009279|GO:0016021	G3DSA:3.30.1330.60|PF00691|PR01021|PTHR30128|SSF103088
ALIDE_RS15995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR003660|IPR029787|IPR033417	GGDEF domain|HAMP domain|Nucleotide cyclase|Periplasmic sensor domain CHASE8	GO:0004871|GO:0007165|GO:0016021	G3DSA:3.30.70.270|PF00672|PF00990|PF17152|PTHR10799|PTHR10799:SF774|SM00267|SM00304|SSF55073|TIGR00254
ALIDE_RS16000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025293	Protein of unknown function DUF4154		PF13689
ALIDE_RS16005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001264|IPR001460|IPR009647|IPR011815|IPR012338|IPR023346	Beta-lactamase/transpeptidase-like|Glycosyl transferase, family 51|Lysozyme-like domain|Penicillin-binding protein 1C|Penicillin-binding protein, transpeptidase|Penicillin-binding, C-terminal	GO:0008658|GO:0008955|GO:0009252	G3DSA:1.10.3810.10|G3DSA:3.40.710.10|PF00905|PF00912|PF06832|PTHR32282|PTHR32282:SF0|SSF53955|SSF56601|TIGR02073
ALIDE_RS16010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011607|IPR018148	Methylglyoxal synthase, active site|Methylglyoxal synthase-like domain	GO:0008929|GO:0019242	G3DSA:3.40.50.1380|PS01335|PTHR30492|SSF52335
ALIDE_RS16015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796
ALIDE_RS16020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|PTHR10909|SSF47203|SSF56645
ALIDE_RS16025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003781|IPR016040|IPR016102|IPR032875	CoA-binding|NAD(P)-binding domain|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain	GO:0048037	G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|PTHR33303|PTHR33303:SF3|SM00881|SSF51735|SSF52210|SSF56059
ALIDE_RS16030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF10|SSF47203|SSF56645
ALIDE_RS16035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006034|IPR027473|IPR027474	Asparaginase/glutaminase|L-asparaginase, C-terminal domain|L-asparaginase, N-terminal	GO:0006520	G3DSA:3.40.50.1170|G3DSA:3.40.50.40|PF00710|PIRSF001220|PIRSF500176|PR00139|PTHR11707|PTHR11707:SF29|SM00870|SSF53774
ALIDE_RS16040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS16045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30126|PTHR30126:SF11|SSF46785|SSF53850
ALIDE_RS16050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004843|IPR006186|IPR029052	Calcineurin-like phosphoesterase domain, apaH type|Metallo-dependent phosphatase-like|Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	GO:0016787	G3DSA:3.60.21.10|PF00149|PR00114|PTHR24032|SSF56300
ALIDE_RS16055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001599|IPR002890|IPR011625|IPR021868	Alpha-2-macroglobulin|Alpha-2-macroglobulin MG1 domain|Alpha-2-macroglobulin, N-terminal|Alpha-2-macroglobulin, N-terminal 2	GO:0004866	PF00207|PF01835|PF07703|PF11974|PTHR40094|PTHR40094:SF1|SM01359|SM01360
ALIDE_RS16060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS16065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000362|IPR008948|IPR009049|IPR020557|IPR022761|IPR024083|IPR029419	Argininosuccinate lyase|Argininosuccinate lyase, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like	GO:0003824|GO:0004056|GO:0042450	G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|MF_00006|PF00206|PF14698|PR00145|PR00149|PS00163|PTHR11444|PTHR11444:SF3|SSF48557|TIGR00838
ALIDE_RS16070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR010559	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, internal region	GO:0000155|GO:0000160|GO:0016021	G3DSA:3.30.565.10|PF06580|PTHR34220|SSF55874
ALIDE_RS16075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004872	Lipoprotein NlpA family		G3DSA:3.40.190.10|PF03180|PIRSF002854|PTHR30429|PTHR30429:SF0|SSF53850|TIGR00363
ALIDE_RS16080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007390	Sporulation stage V, protein R		PF04293|PTHR30029|PTHR30029:SF2
ALIDE_RS16085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006698	Uncharacterised protein family UPF0229		MF_01232|PF04285|PTHR30510
ALIDE_RS16090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010650|IPR013153|IPR016230|IPR027417	P-loop containing nucleoside triphosphate hydrolase|PrkA AAA domain|PrkA C-terminal domain|Serine-protein kinase, PrkA	GO:0004672	G3DSA:3.40.50.300|PF06798|PF08298|PIRSF000549|PTHR30267|PTHR30267:SF2|SM00763|SSF52540
ALIDE_RS16095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000944|IPR011991	Transcription regulator Rrf2-type|Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|PF02082|PTHR33221|PTHR33221:SF4|SSF46785|TIGR00738
ALIDE_RS16100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012312|IPR019903	Haemerythrin-like|Repair of iron centres family		G3DSA:1.20.120.520|PF01814|PF04405|PTHR36438|PTHR36438:SF1|TIGR03652
ALIDE_RS16105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009050|IPR012292	Globin-like|Globin/Protoglobin	GO:0019825|GO:0020037	G3DSA:1.10.490.10|SSF46458
ALIDE_RS16110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR024530	Putative quorum-sensing-regulated virulence factor		PD056452|PF12843|PTHR40613|PTHR40613:SF1
ALIDE_RS16115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008457	Copper resistance protein D	GO:0016021	PF05425
ALIDE_RS16120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001395|IPR020471|IPR023210	Aldo/keto reductase|Aldo/keto reductase/potassium channel subunit beta|NADP-dependent oxidoreductase domain	GO:0016491|GO:0055114	G3DSA:3.20.20.100|PF00248|PR00069|PTHR11732|PTHR11732:SF273|SSF51430
ALIDE_RS16125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007236	SlyX		G3DSA:1.20.5.300|PF04102
ALIDE_RS16130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004839|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0009058|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PTHR11751|PTHR11751:SF294|SSF53383
ALIDE_RS16135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010499|IPR011256|IPR029442	Bacterial transcription activator, effector binding|GyrI-like small molecule binding domain|Regulatory factor, effector binding domain		G3DSA:3.20.80.10|PF06445|PTHR40055|PTHR40055:SF1|SM00871|SSF55136
ALIDE_RS16140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS16145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000120|IPR023631	Amidase|Amidase signature domain	GO:0016884	G3DSA:3.90.1300.10|PF01425|PTHR11895|PTHR11895:SF76|SSF75304
ALIDE_RS16150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|PTHR30126:SF11|SSF46785|SSF53850
ALIDE_RS16155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000445|IPR003265|IPR003651|IPR004035|IPR004036|IPR005759|IPR011257|IPR023170	DNA glycosylase|Endonuclease III|Endonuclease III, iron-sulphur binding site|Endonuclease III-like, conserved site-2|Endonuclease III-like, iron-sulphur cluster loop motif|Helix-hairpin-helix motif|Helix-turn-helix, base-excision DNA repair, C-terminal|HhH-GPD domain	GO:0003677|GO:0003824|GO:0003906|GO:0006281|GO:0006284|GO:0051539	G3DSA:1.10.1670.10|G3DSA:1.10.340.30|MF_00942|PF00633|PF00730|PF10576|PIRSF001435|PS00764|PS01155|PTHR10359|PTHR10359:SF18|SM00478|SM00525|SSF48150|TIGR01083
ALIDE_RS16160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002589	Macro domain		G3DSA:3.40.220.10|PF01661|PTHR12521|SM00506|SSF52949
ALIDE_RS16165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003200|IPR017846|IPR023195	Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal|Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic|Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like	GO:0008939|GO:0009163|GO:0009236	G3DSA:1.10.1610.10|G3DSA:3.40.50.10210|MF_00230|PF02277|PTHR21712|PTHR21712:SF4|SSF52733|TIGR03160
ALIDE_RS16170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002586|IPR004459|IPR011698|IPR027417|IPR029062	Class I glutamine amidotransferase-like|CobB/CobQ-like glutamine amidotransferase|CobQ/CobB/MinD/ParA nucleotide binding domain|Cobyric acid synthase CobQ|P-loop containing nucleoside triphosphate hydrolase	GO:0003824|GO:0009236	G3DSA:3.40.50.300|G3DSA:3.40.50.880|MF_00028|PF01656|PF07685|PTHR21343|PTHR21343:SF1|SSF52317|SSF52540|TIGR00313
ALIDE_RS16175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004839|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0009058|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|SSF53383
ALIDE_RS16180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004485	Cobalamin biosynthesis CobD/CbiB	GO:0009236|GO:0016021|GO:0048472	MF_00024|PF03186|PTHR34308|PTHR34308:SF1|TIGR00380
ALIDE_RS16185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022346	General secretion pathway, GspH	GO:0008565|GO:0015627|GO:0015628	G3DSA:3.30.700.10|PF12019|SSF54523
ALIDE_RS16190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012902|IPR013362	Pilus modification type IV, PilV|Prokaryotic N-terminal methylation site		PS00409|TIGR02523
ALIDE_RS16195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012902|IPR032092	Prokaryotic N-terminal methylation site|Type IV Pilus-assembly protein W	GO:0043683	PF13544|PF16074|PS00409|TIGR02532
ALIDE_RS16200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025205|IPR025746	PilX/PilW C-terminal domain|Type 4 fimbrial biogenesis protein PilX, N-terminal domain		PF13681|PF14341
ALIDE_RS16205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008707	PilC beta-propeller domain		PF05567
ALIDE_RS16210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012902|IPR031982	Prokaryotic N-terminal methylation site|Type IV minor pilin ComP		G3DSA:3.30.700.10|PF13544|PF16732|PS00409|PTHR30093|PTHR30093:SF4|SSF54523|TIGR02532
ALIDE_RS16215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002125|IPR002734|IPR004794|IPR011549|IPR016192|IPR016193|IPR024072	APOBEC/CMP deaminase, zinc-binding|Bacterial bifunctional deaminase-reductase, C-terminal|Cytidine and deoxycytidylate deaminases, zinc-binding|Cytidine deaminase-like|Dihydrofolate reductase-like domain|Riboflavin biosynthesis protein RibD|Riboflavin-specific deaminase, C-terminal	GO:0003824|GO:0008270|GO:0008703|GO:0008835|GO:0009231|GO:0016787|GO:0050661|GO:0055114	G3DSA:3.40.140.10|G3DSA:3.40.430.10|PF00383|PF01872|PIRSF006769|PS00903|PTHR11079|PTHR11079:SF10|SSF53597|SSF53927|TIGR00227|TIGR00326
ALIDE_RS16220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001736|IPR025202	Phospholipase D-like domain|Phospholipase D/Transphosphatidylase	GO:0003824	G3DSA:3.30.870.10|PF13091|PTHR21248|PTHR21248:SF12|SM00155|SSF56024
ALIDE_RS16225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001269|IPR013785|IPR018517|IPR032886	Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine(16) synthase	GO:0002943|GO:0003824|GO:0008033|GO:0017150|GO:0050660|GO:0055114	G3DSA:3.20.20.70|MF_02043|PF01207|PIRSF006621|PS01136|PTHR11082|PTHR11082:SF26|SSF51395
ALIDE_RS16230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007848|IPR029063	Methyltransferase small domain|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008168	G3DSA:3.40.50.150|PF05175|PTHR18895|SSF53335
ALIDE_RS16235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR016181	Acyl-CoA N-acyltransferase|GNAT domain	GO:0008080	G3DSA:3.40.630.30|PF00583|PTHR23091|SSF55729
ALIDE_RS16240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012394|IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase NAD(P)-dependent|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0004030|GO:0006081|GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PIRSF036492|PS00070|PS00687|PTHR11699|PTHR11699:SF15|SSF53720
ALIDE_RS16250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001270|IPR003593|IPR003959|IPR004176|IPR017730|IPR018368|IPR019489|IPR027417|IPR028299	AAA+ ATPase domain|ATPase, AAA-type, core|Chaperonin ClpB|Clp ATPase, C-terminal|Clp, N-terminal|ClpA/B family|ClpA/B, conserved site 1|ClpA/B, conserved site 2|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0005737|GO:0009408|GO:0016485|GO:0019538	G3DSA:1.10.1780.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|PF00004|PF02861|PF07724|PF10431|PR00300|PS00870|PS00871|PTHR11638|PTHR11638:SF18|SM00382|SM01086|SSF52540|SSF81923|TIGR03346
ALIDE_RS16255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003448	Molybdopterin biosynthesis MoaE	GO:0006777	G3DSA:3.90.1170.40|PF02391|PTHR23404|PTHR23404:SF2|SSF54690
ALIDE_RS16270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002220|IPR005263|IPR013785|IPR020624|IPR020625	4-hydroxy-tetrahydrodipicolinate synthase, DapA|Aldolase-type TIM barrel|DapA-like|Schiff base-forming aldolase, active site|Schiff base-forming aldolase, conserved site	GO:0003824|GO:0008152|GO:0008840|GO:0009089|GO:0016829	G3DSA:3.20.20.70|MF_00418|PF00701|PIRSF001365|PR00146|PS00665|PS00666|PTHR12128|PTHR12128:SF34|SM01130|SSF51569|TIGR00674
ALIDE_RS16275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003749|IPR012675|IPR016155	Beta-grasp domain|Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp|ThiamineS/Molybdopterin converting factor subunit 1		G3DSA:3.10.20.30|PF02597|PTHR33359|PTHR33359:SF1|SSF54285
ALIDE_RS16280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001453|IPR005110|IPR005111	MoaB/Mog domain|MoeA, C-terminal, domain IV|MoeA, N-terminal and linker domain	GO:0032324	G3DSA:2.170.190.11|G3DSA:2.40.340.10|G3DSA:3.40.980.10|G3DSA:3.90.105.10|PF00994|PF03453|PF03454|PTHR10192|PTHR10192:SF17|SM00852|SSF53218|SSF63867|SSF63882|TIGR00177
ALIDE_RS16285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004435|IPR027417	Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain|P-loop containing nucleoside triphosphate hydrolase	GO:0005525|GO:0006777	G3DSA:3.40.50.300|PF03205|PTHR40072|PTHR40072:SF2|SSF52540|TIGR00176
ALIDE_RS16290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001926|IPR004450|IPR029144	Threonine synthase, N-terminal|Threonine synthase-like|Tryptophan synthase beta subunit-like PLP-dependent enzyme		G3DSA:3.40.50.1100|G3DSA:3.90.1380.10|PF00291|PF14821|PTHR10314|PTHR10314:SF1|SSF53686|TIGR00260
ALIDE_RS16295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002716|IPR022907|IPR029060	PIN domain|PIN domain-like|VapC family	GO:0004540	G3DSA:3.40.50.1010|MF_00265|PF01850|PTHR33653|PTHR33653:SF1|SSF88723
ALIDE_RS16300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006442	Type II toxin-antitoxin system, antitoxin Phd/YefM		G3DSA:3.40.1620.10|PF02604|SSF143120|TIGR01552
ALIDE_RS16305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001342|IPR002912|IPR005106|IPR016040|IPR016204|IPR019811	ACT domain|Aspartate/homoserine dehydrogenase, NAD-binding|Homoserine dehydrogenase|Homoserine dehydrogenase, catalytic|Homoserine dehydrogenase, conserved site|NAD(P)-binding domain	GO:0004412|GO:0006520|GO:0008152|GO:0016491|GO:0016597|GO:0050661|GO:0055114	G3DSA:3.30.360.10|G3DSA:3.30.70.260|G3DSA:3.40.50.720|PF00742|PF01842|PF03447|PIRSF000098|PS01042|PTHR21499|PTHR21499:SF2|SSF51735|SSF55021|SSF55347
ALIDE_RS16310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004839|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0009058|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PTHR11751|PTHR11751:SF303|SSF53383
ALIDE_RS16315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007523	NDUFAF3/Mth938 domain-containing protein		G3DSA:3.40.1230.10|PF04430|PTHR21192|PTHR21192:SF3|SSF64076
ALIDE_RS16330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS16335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF229|SSF47203|SSF56645
ALIDE_RS16340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain	GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02771|PTHR10909|PTHR10909:SF341|SSF47203|SSF56645
ALIDE_RS16345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035	DHS-like NAD/FAD-binding domain|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold	GO:0009055|GO:0050660	G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|PTHR10909|PTHR10909:SF294|SM00893|SSF52402|SSF52467
ALIDE_RS16350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000049|IPR012255|IPR014729|IPR014730	Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold	GO:0009055	G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|PTHR21294|PTHR21294:SF8|SM00893|SSF52402
ALIDE_RS16355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS16360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|PTHR18919|PTHR18919:SF14|SSF53901|TIGR01930
ALIDE_RS16365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002878|IPR012340|IPR022002	Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold		PF01796|PF12172|PTHR34075|PTHR34075:SF2|SSF50249
ALIDE_RS16370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039	Thiolase|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PIRSF000429|PTHR18919|PTHR18919:SF108|SSF53901
ALIDE_RS16375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR014748|IPR018376|IPR029045	ClpP/crotonase-like domain|Crontonase, C-terminal|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|SSF52096
ALIDE_RS16380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|PTHR10909|SSF47203|SSF56645
ALIDE_RS16385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003781|IPR013816|IPR016040|IPR016102|IPR032875	ATP-grasp fold, subdomain 2|CoA-binding|NAD(P)-binding domain|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain	GO:0005524|GO:0048037	G3DSA:3.30.470.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|PTHR33303|PTHR33303:SF3|SM00881|SSF51735|SSF52210|SSF56059
ALIDE_RS16390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002878|IPR012340	Domain of unknown function DUF35, OB-fold, C-terminal|Nucleic acid-binding, OB-fold		PF01796|PTHR34075|SSF50249
ALIDE_RS16395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF02803|PIRSF000429|PTHR18919|PTHR18919:SF108|SSF53901
ALIDE_RS16400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|SSF52096
ALIDE_RS16405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR006108|IPR006176|IPR008927|IPR013328|IPR016040|IPR029045	3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|ClpP/crotonase-like domain|Crotonase superfamily|NAD(P)-binding domain	GO:0003824|GO:0003857|GO:0006631|GO:0008152|GO:0016491|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|PTHR23309|PTHR23309:SF9|SSF48179|SSF51735|SSF52096
ALIDE_RS16410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337	Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF13333|PTHR32552|SSF53098
ALIDE_RS16415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|SM00346|SSF46785|SSF55781
ALIDE_RS16420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain	GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02771|PTHR10909|PTHR10909:SF302|SSF47203|SSF56645
ALIDE_RS16425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF229|SSF47203|SSF56645
ALIDE_RS16430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|SSF52096
ALIDE_RS16435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009959|IPR032710	NTF2-like domain|Polyketide cyclase SnoaL-like domain		G3DSA:3.10.450.50|PF13577|SSF54427
ALIDE_RS16440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS16445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|PTHR24322|PTHR24322:SF328|SM00822|SSF51735
ALIDE_RS16450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS16455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PTHR24321|PTHR24321:SF6|SSF51735
ALIDE_RS16460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24322|SSF51735
ALIDE_RS16465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS16470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS16475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001155|IPR013785	Aldolase-type TIM barrel|NADH:flavin oxidoreductase/NADH oxidase, N-terminal	GO:0003824|GO:0010181|GO:0016491|GO:0055114	G3DSA:3.20.20.70|PF00724|PTHR22893|PTHR22893:SF7|SSF51395
ALIDE_RS16480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013216|IPR029063	Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008152|GO:0008168	G3DSA:3.40.50.150|PF08241|PTHR10108|SSF53335
ALIDE_RS16485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001497|IPR008332|IPR011991|IPR014048	Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding|Methylated-DNA-[protein]-cysteine S-methyltransferase, active site|Methylguanine DNA methyltransferase, ribonuclease-like domain|Winged helix-turn-helix DNA-binding domain	GO:0003824|GO:0003908|GO:0006281	G3DSA:1.10.10.10|G3DSA:3.30.160.70|PF01035|PF02870|PS00374|PTHR10815|PTHR10815:SF5|SSF46767|SSF53155|TIGR00589
ALIDE_RS16490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003724|IPR027417	ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0008817|GO:0009236	G3DSA:3.40.50.300|PF02572|PIRSF015617|PTHR30069|SSF52540|TIGR00708
ALIDE_RS16495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|SM00382|SSF52540
ALIDE_RS16500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000522|IPR029022	ABC transporter, BtuC-like|ABC transporter, permease protein	GO:0005215|GO:0016020	G3DSA:1.10.3470.10|PF01032|PTHR30472|SSF81345
ALIDE_RS16505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002491	ABC transporter periplasmic binding domain	GO:0005488	G3DSA:3.40.50.1980|PF01497|PTHR30535|SSF53807
ALIDE_RS16510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003203|IPR027417	Cobinamide kinase/cobinamide phosphate guanyltransferase|P-loop containing nucleoside triphosphate hydrolase	GO:0000166|GO:0009236|GO:0043752|GO:0051188	G3DSA:3.40.50.300|PF02283|PIRSF006135|PTHR34848|SSF52540
ALIDE_RS16515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002586|IPR011698|IPR027417|IPR029062	Class I glutamine amidotransferase-like|CobB/CobQ-like glutamine amidotransferase|CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase	GO:0003824|GO:0009236	G3DSA:3.40.50.300|G3DSA:3.40.50.880|PF01656|PF07685|PTHR21343|PTHR21343:SF6|SSF52317|SSF52540
ALIDE_RS16520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR012910	TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain	GO:0004872|GO:0006810|GO:0016020	G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PTHR32552|SSF56935
ALIDE_RS16525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:1.20.58.60
ALIDE_RS16530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007838	Cell division protein ZapA-like		PF05164|SSF102829
ALIDE_RS16535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001633|IPR029787	EAL domain|GGDEF domain|Nucleotide cyclase|PAS domain		G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF13188|PF13426|PTHR10799|PTHR10799:SF710|SM00052|SM00091|SM00267|SSF141868|SSF55073|SSF55785|TIGR00229|TIGR00254
ALIDE_RS16540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003607|IPR006674|IPR006675|IPR021812	HD domain|HD/PDEase domain|HDIG domain|Protein of unknown function DUF3391		G3DSA:1.10.3210.10|PF11871|PF13487|SM00471|SSF109604|TIGR00277
ALIDE_RS16545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF13386|PTHR42208|PTHR42208:SF1
ALIDE_RS16550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004558|IPR006638|IPR007197|IPR010723|IPR023404	Coproporphyrinogen III oxidase, oxygen-independent,  HemN|Elongator protein 3/MiaB/NifB|HemN, C-terminal|Radical SAM|Radical SAM, alpha/beta horseshoe	GO:0003824|GO:0004109|GO:0005737|GO:0006779|GO:0051536|GO:0055114	G3DSA:3.80.30.20|PF04055|PF06969|PIRSF000167|PTHR13932|PTHR13932:SF6|SM00729|SSF102114|TIGR00538
ALIDE_RS16555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000595|IPR011991|IPR012318|IPR014710|IPR018490	Crp-type HTH domain|Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:2.60.120.10|PF00027|PF13545|PR00034|PTHR24567|PTHR24567:SF28|SM00100|SM00419|SSF46785|SSF51206
ALIDE_RS16565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008620	Nitrogen fixation protein FixH		PF05751
ALIDE_RS16570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013783|IPR014116|IPR017896|IPR017900|IPR032879	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Cytochrome c oxidase cbb3 type, accessory protein FixG|FixG, C-terminal immunoglobulin-like domain|Immunoglobulin-like fold	GO:0016021	G3DSA:1.10.1060.10|G3DSA:2.60.40.10|G3DSA:3.30.70.20|PF11614|PF12801|PF13746|PS00198|PTHR24960|PTHR24960:SF45|SSF54862|TIGR02745
ALIDE_RS16575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004678|IPR008168|IPR009056|IPR032858	Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal|Cytochrome c oxidase cbb3-type, subunit III|Cytochrome c, class IC|Cytochrome c-like domain	GO:0005506|GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF13442|PF14715|PIRSF000006|PR00605|PTHR33751|PTHR33751:SF1|SSF46626|TIGR00782
ALIDE_RS16580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008621	Cbb3-type cytochrome oxidase component		PF05545
ALIDE_RS16585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000883|IPR003468|IPR009056	Cytochrome c oxidase subunit I|Cytochrome c oxidase, monohaem subunit/FixO|Cytochrome c-like domain	GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114	G3DSA:1.10.760.10|PF02433|PTHR10422|PTHR10422:SF23|SSF46626|TIGR00781
ALIDE_RS16590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000883|IPR004677|IPR023615|IPR023616	Cytochrome c oxidase cbb3-type, subunit I|Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I domain|Cytochrome c oxidase, subunit I, copper-binding site	GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0045278|GO:0055114	G3DSA:1.20.210.10|PF00115|PS00077|PTHR10422|PTHR10422:SF21|SSF81442|TIGR00780
ALIDE_RS16595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004714	Cytochrome oxidase maturation protein cbb3-type		PF03597|TIGR00847
ALIDE_RS16600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR006121|IPR008250|IPR018303|IPR023214|IPR027256	HAD-like domain|Heavy metal-associated domain, HMA|P-type ATPase|P-type ATPase, A  domain|P-type ATPase, phosphorylation site|P-type ATPase, subfamily IB	GO:0000166|GO:0006812|GO:0016021|GO:0019829|GO:0030001|GO:0046872	G3DSA:2.70.150.10|G3DSA:3.30.70.100|G3DSA:3.40.50.1000|PF00122|PF00403|PF00702|PR00119|PS00154|PTHR24093|PTHR24093:SF50|SSF55008|SSF56784|SSF81653|SSF81665|TIGR01494|TIGR01511|TIGR01525
ALIDE_RS16605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006015|IPR006016|IPR014729	Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA	GO:0006950	G3DSA:3.40.50.620|PF00582|PIRSF006276|PR01438|PTHR31964|PTHR31964:SF45|SSF52402
ALIDE_RS16610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|PTHR24096:SF206|SSF56801
ALIDE_RS16615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR018376|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|SSF52096
ALIDE_RS16620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS16625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007956	Malonyl-CoA decarboxylase	GO:0006633|GO:0050080	PF05292|PTHR28641|PTHR28641:SF1
ALIDE_RS16630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991|IPR029074	GntR, C-terminal|Immunity protein 49|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PF15575|PR00035|PTHR11751|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS16635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001640	Prolipoprotein diacylglyceryl transferase	GO:0009249|GO:0016020|GO:0016757|GO:0042158	MF_01147|PF01790|PS01311|PTHR30589|PTHR30589:SF0|TIGR00544
ALIDE_RS16640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002024|IPR008331|IPR009078|IPR012347	Bacterioferritin|Ferritin-like superfamily|Ferritin-related|Ferritin/DPS protein domain	GO:0006826|GO:0006879|GO:0008199	G3DSA:1.20.1260.10|PF00210|PIRSF002560|PR00601|PS00549|PTHR30295|PTHR30295:SF9|SSF47240|TIGR00754
ALIDE_RS16645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003736|IPR006683|IPR029069	HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR12418|PTHR12418:SF28|SSF54637|TIGR00369
ALIDE_RS16650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000581|IPR004404|IPR015928|IPR020558	Aconitase/3-isopropylmalate dehydratase, swivel|Dihydroxy-acid dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site	GO:0003824|GO:0004160|GO:0008152|GO:0009082	MF_00012|PF00920|PS00886|PS00887|PTHR21000|PTHR21000:SF11|SSF143975|SSF52016|TIGR00110
ALIDE_RS16655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000581|IPR004404|IPR015928|IPR020558	Aconitase/3-isopropylmalate dehydratase, swivel|Dihydroxy-acid dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase|Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site	GO:0003824|GO:0004160|GO:0008152|GO:0009082	MF_00012|PF00920|PS00886|PS00887|PTHR21000|PTHR21000:SF5|SSF143975|SSF52016|TIGR00110
ALIDE_RS16660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR031044	Small Trp-rich protein		TIGR04438
ALIDE_RS16665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002324|IPR009056	Cytochrome c, class ID|Cytochrome c-like domain	GO:0005506|GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF00034|PR00606|SSF46626
ALIDE_RS16670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR011924|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Lipoprotein releasing system, ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0006810|GO:0016020|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF111|SM00382|SSF52540|TIGR02211
ALIDE_RS16675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003838|IPR011925|IPR025857	ABC transporter permease protein domain|Lipoprotein-releasing system transmembrane protein LolC/E|MacB-like periplasmic core domain	GO:0016020|GO:0016021|GO:0042953|GO:0042954	G3DSA:2.40.40.20|PF02687|PF12704|PTHR30489|PTHR30489:SF8|TIGR02212
ALIDE_RS16685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001667|IPR003156|IPR004610	Bacterial RecJ exonuclease|DDH domain|DHHA1 domain	GO:0003676|GO:0006281|GO:0006310|GO:0008409	PF01368|PF02272|PTHR30255|PTHR30255:SF2|SSF64182|TIGR00644
ALIDE_RS16690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003660|IPR004089|IPR004090	Chemotaxis methyl-accepting receptor|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain	GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021	G3DSA:1.10.287.950|PF00015|PF00672|PR00260|PTHR32089|PTHR32089:SF63|SM00283|SM00304|SSF58104
ALIDE_RS16695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003141|IPR004013|IPR016195	PHP domain|Polymerase/histidinol phosphatase, N-terminal|Polymerase/histidinol phosphatase-like	GO:0003677|GO:0003824|GO:0003887|GO:0006260	G3DSA:3.20.20.140|PF02811|PTHR30007|PTHR30007:SF4|SM00481|SSF89550
ALIDE_RS16700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006070|IPR017945	DHBP synthase RibB-like alpha/beta domain|YrdC-like domain	GO:0003725	G3DSA:3.90.870.10|PF01300|PTHR17490|PTHR17490:SF7|SSF55821|TIGR00057
ALIDE_RS16705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003660|IPR004089|IPR004090	Chemotaxis methyl-accepting receptor|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain	GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021	G3DSA:1.10.287.950|PF00015|PF00672|PR00260|PTHR32089|PTHR32089:SF63|SM00283|SSF58104
ALIDE_RS16710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PTHR22939|PTHR22939:SF104
ALIDE_RS16715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001412|IPR002305|IPR002306|IPR010879|IPR014729|IPR024109	Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ic|Domain of unknown function DUF1508|Rossmann-like alpha/beta/alpha sandwich fold|Tryptophan-tRNA ligase|Tryptophan-tRNA ligase, bacterial-type	GO:0000166|GO:0004812|GO:0004830|GO:0005524|GO:0005737|GO:0006418|GO:0006436	G3DSA:1.10.240.10|G3DSA:3.30.160.160|G3DSA:3.40.50.620|MF_00140_B|PF00579|PF07411|PR01039|PS00178|PTHR10055|PTHR10055:SF11|SSF160113|SSF52374|TIGR00233
ALIDE_RS16720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF405|SM00448|SM00862|SSF52172
ALIDE_RS16725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006860|IPR016930|IPR018392	FecR protein|LysM domain|Uncharacterised conserved protein UCP029644, LysM, PA4035		G3DSA:3.10.350.10|PF01476|PF04773|PIRSF029644|SM00257
ALIDE_RS16730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR003594|IPR003661|IPR004358|IPR007890|IPR017181	CHASE2|Histidine kinase-like ATPase, C-terminal domain|PAS domain|Signal transduction histidine kinase, CHASE2/PAS sensor domain-containing, predicted|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF02518|PF05226|PIRSF037347|PR00344|PTHR24423|SM00387|SM01080|SSF47384|SSF55785|SSF55874
ALIDE_RS16735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003362|IPR016040|IPR017464|IPR017475	Bacterial sugar transferase|Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase|NAD(P)-binding domain|Sugar transferase, PEP-CTERM system associated		G3DSA:3.40.50.720|PF02397|PTHR30576|PTHR30576:SF0|TIGR03013|TIGR03025
ALIDE_RS16750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021134	Bestrophin/UPF0187		PF01062|PTHR33281|PTHR33281:SF3
ALIDE_RS16755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002314|IPR002317|IPR010978|IPR015866	Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)|Serine-tRNA ligase, type1|Serine-tRNA synthetase, type1, N-terminal|tRNA-binding arm	GO:0000166|GO:0004812|GO:0004828|GO:0005524|GO:0005737|GO:0006418|GO:0006434	G3DSA:1.10.287.40|G3DSA:3.30.930.10|MF_00176|PF00587|PF02403|PIRSF001529|PR00981|PTHR11778|SSF46589|SSF55681|TIGR00414
ALIDE_RS16760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644	CBS domain		G3DSA:3.10.580.10|PF00571|PTHR11911|SM00116|SSF54631
ALIDE_RS16765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644|IPR002550|IPR005170|IPR016166|IPR016169	CBS domain|CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|Domain of unknown function DUF21|FAD-binding, type 2|Transporter-associated domain	GO:0003824|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.10.580.10|G3DSA:3.30.465.10|PF00571|PF01595|PF03471|PTHR22777|PTHR22777:SF8|SM00116|SM01091|SSF54631|SSF56176
ALIDE_RS16770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003451	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	GO:0019288|GO:0046872|GO:0050992|GO:0051745	MF_00191|PF02401|PTHR30426|TIGR00216
ALIDE_RS16775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	GO:0006457	G3DSA:3.10.50.40|PF00254|SSF54534
ALIDE_RS16780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001405|IPR020891|IPR025657	RadC protein|RadC-like JAB domain|Uncharacterised protein family UPF0758, conserved site		G3DSA:3.40.140.10|PF04002|PS01302|PTHR30471|PTHR30471:SF5|SSF102712|TIGR00608
ALIDE_RS16785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027372	Phytase-like domain		PF13449|PTHR41519|PTHR41519:SF1
ALIDE_RS16790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002625	Smr domain		PF01713|PTHR35562|PTHR35562:SF2|SM00463|SSF160443
ALIDE_RS16795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS16800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001030|IPR006251|IPR015931|IPR015932|IPR015937	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2|Aconitase/isopropylmalate dehydratase|Homoaconitase/3-isopropylmalate dehydratase, large subunit	GO:0008152|GO:0008652|GO:0016836|GO:0051539	G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PR00415|PTHR11670|SSF53732|TIGR01343
ALIDE_RS16805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000573|IPR011827|IPR015928|IPR015937	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/isopropylmalate dehydratase|Hydrolyase LeuD/HacB/DmdB	GO:0008152|GO:0016836	G3DSA:3.20.19.10|PF00694|PTHR11670|PTHR11670:SF41|SSF52016|TIGR02087
ALIDE_RS16810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015813|IPR018523	Isocitrate lyase/phosphorylmutase, conserved site|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824|GO:0008152	G3DSA:3.20.20.60|PF13714|PS00161|PTHR21631|PTHR21631:SF4|SSF51621
ALIDE_RS16815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR011663|IPR011991|IPR028978	Chorismate pyruvate-lyase/UbiC transcription regulator-associated  domain|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|PTHR11751|PTHR11751:SF432|SM00345|SM00866|SSF46785|SSF64288
ALIDE_RS16820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001486|IPR009050|IPR012292	Globin-like|Globin/Protoglobin|Truncated hemoglobin	GO:0019825|GO:0020037	G3DSA:1.10.490.10|PF01152|PTHR10681|SSF46458
ALIDE_RS16825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000962	Zinc finger, DksA/TraR C4-type	GO:0008270	PF01258|PTHR33823|SSF109635|SSF57716
ALIDE_RS16830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011009|IPR027417	P-loop containing nucleoside triphosphate hydrolase|Protein kinase-like domain		G3DSA:3.40.50.300|G3DSA:3.90.1200.10|PF13671|PTHR12083|PTHR12083:SF8|SSF52540|SSF56112
ALIDE_RS16840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003838	ABC transporter permease protein domain	GO:0016020	PF02687|PTHR30287
ALIDE_RS16845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003786|IPR016193	Cytidine deaminase-like|Protein FdhD	GO:0003824|GO:0016783	G3DSA:3.10.20.10|G3DSA:3.40.140.10|PF02634|PIRSF015626|PTHR30592|PTHR30592:SF2|SSF53927
ALIDE_RS16855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006471|IPR011577|IPR016174	Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane|Formate dehydrogenase, gamma subunit	GO:0008863|GO:0009055|GO:0009326|GO:0016020|GO:0016021|GO:0022904|GO:0045333	G3DSA:1.20.950.20|PF01292|PTHR30074|PTHR30074:SF2|SSF81342|TIGR01583
ALIDE_RS16865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000813|IPR017896|IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|7Fe ferredoxin	GO:0009055	G3DSA:3.30.70.20|PF13247|PR00354|PS00198|PTHR11938|PTHR11938:SF96|SSF54862
ALIDE_RS16870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006656|IPR006657|IPR006963|IPR009010|IPR027467	Aspartate decarboxylase-like domain|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, molybdopterin cofactor binding site	GO:0016491|GO:0030151|GO:0051539|GO:0055114	G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF04879|PS00551|PTHR11615|PTHR11615:SF140|SM00926|SSF50692|SSF53706
ALIDE_RS16875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014177	Putative formate dehydrogenase, TAT signal-containing		PIRSF036704|TIGR02811
ALIDE_RS16880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR020945	DMSO/Nitrate reductase chaperone		G3DSA:1.10.3480.10|PF02613|PTHR34227|PTHR34227:SF4|SSF89155
ALIDE_RS16885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017896|IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain		G3DSA:1.10.1060.10|G3DSA:3.30.70.20|PF00037|PF12838|PF13187|PS00198|PTHR24960|PTHR24960:SF43|SSF54862
ALIDE_RS16890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021735	Protein of unknown function DUF3306		PF11748
ALIDE_RS16895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021736	Protein of unknown function DUF3305		PF11749
ALIDE_RS16900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR006478|IPR006655|IPR006656|IPR006657|IPR006963|IPR009010|IPR012675|IPR017896|IPR017900	2Fe-2S ferredoxin-type iron-sulfur binding domain|4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Aspartate decarboxylase-like domain|Beta-grasp domain|Formate dehydrogenase, alpha subunit|Molybdopterin dinucleotide-binding domain|Molybdopterin oxidoreductase|Molybdopterin oxidoreductase, 4Fe-4S domain|Molybdopterin oxidoreductase, prokaryotic, conserved site	GO:0008863|GO:0009055|GO:0015942|GO:0016491|GO:0030151|GO:0051536|GO:0055114	G3DSA:2.20.25.90|G3DSA:2.40.40.20|G3DSA:3.10.20.30|G3DSA:3.30.70.20|G3DSA:3.40.228.10|G3DSA:3.40.50.740|PF00384|PF01568|PF04879|PF13187|PF13510|PIRSF036643|PS00198|PS00490|PTHR11615|PTHR11615:SF112|SM00926|SSF50692|SSF53706|SSF54292|SSF54862|TIGR01591
ALIDE_RS16905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001949|IPR011538|IPR012336|IPR019554|IPR019575	NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain|NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain|NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site|Soluble ligand binding domain|Thioredoxin-like fold	GO:0008137|GO:0010181|GO:0051539|GO:0055114	G3DSA:3.40.30.10|PF01257|PF01512|PF10531|PF10589|PS00644|PS00645|PTHR11780|PTHR11780:SF10|SM00928|SSF140490|SSF142019|SSF142984|SSF52833
ALIDE_RS16910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005000|IPR011206|IPR015813	Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824	G3DSA:3.20.20.60|PF03328|PIRSF015582|PTHR32308|SSF51621
ALIDE_RS16915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain	GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PTHR23527|PTHR23527:SF1|SSF103473
ALIDE_RS16920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR011663|IPR011991|IPR028978	Chorismate pyruvate-lyase/UbiC transcription regulator-associated  domain|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|PTHR11751|SM00345|SM00866|SSF46785|SSF64288
ALIDE_RS16925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS16930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PTHR10909|SSF47203|SSF56645
ALIDE_RS16935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS16940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS16945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR029069	HotDog domain|MaoC-like domain		G3DSA:3.10.129.10|PF01575|PTHR13078|SSF54637
ALIDE_RS16950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000808|IPR002744|IPR019591|IPR027417	Domain of unknown function DUF59|Mrp, conserved site|Mrp/NBP35 ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase	GO:0005524	G3DSA:3.40.50.300|MF_02040|PF01883|PF10609|PS01215|PTHR23264|PTHR23264:SF19|SSF117916|SSF52540
ALIDE_RS16955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004695	Voltage-dependent anion channel	GO:0016021|GO:0055085	PF03595
ALIDE_RS16960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004536|IPR010918|IPR016188|IPR023061	AIR synthase-related protein, C-terminal domain|PurM-like, N-terminal domain|Selenophosphate synthetase|Selenophosphate synthetase, class I	GO:0004756|GO:0005524|GO:0016260	G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_00625|PF00586|PF02769|PIRSF036407|PTHR10256|SSF55326|SSF56042|TIGR00476
ALIDE_RS16965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001763|IPR017582	Rhodanese-like domain|tRNA 2-selenouridine synthase	GO:0016785|GO:0043828|GO:0070329	G3DSA:3.40.250.10|PF00581|PTHR30401|PTHR30401:SF0|SM00450|SSF52821|TIGR03167
ALIDE_RS16970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007560|IPR011335|IPR011856	Restriction endonuclease  type II-like|Restriction endonuclease type IV,  Mrr|tRNA endonuclease-like domain	GO:0003676|GO:0003677|GO:0004518|GO:0004519|GO:0009307	G3DSA:3.40.1350.10|PF04471|SSF52980
ALIDE_RS16975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002641|IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase|Patatin/Phospholipase A2-related	GO:0006629|GO:0008152	G3DSA:3.40.1090.10|PF01734|PTHR14226|PTHR14226:SF34|SSF52151
ALIDE_RS16980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001412|IPR002547|IPR004495|IPR009080|IPR012340|IPR014729|IPR014758|IPR015413|IPR023458|IPR029038	Aminoacyl-tRNA synthetase, class 1a, anticodon-binding|Aminoacyl-tRNA synthetase, class I, conserved site|Methionine-tRNA ligase, type 1|Methionyl-tRNA synthetase|Methionyl-tRNA synthetase, Zn-domain|Methionyl-tRNA synthetase, beta subunit, C-terminal|Methionyl/Leucyl tRNA synthetase|Nucleic acid-binding, OB-fold|Rossmann-like alpha/beta/alpha sandwich fold|tRNA-binding domain	GO:0000049|GO:0000166|GO:0004812|GO:0004825|GO:0005524|GO:0005737|GO:0006418|GO:0006431	G3DSA:1.10.730.10|G3DSA:2.20.28.20|G3DSA:2.40.50.140|G3DSA:3.40.50.620|MF_00098|PF01588|PF09334|PR01041|PS00178|PTHR11946|PTHR11946:SF86|SSF47323|SSF50249|SSF52374|SSF57770|TIGR00398|TIGR00399
ALIDE_RS16990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR004839|IPR011991|IPR015421|IPR015424	Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170	G3DSA:1.10.10.10|G3DSA:3.40.640.10|PF00155|PF00392|PR00035|PTHR11751|PTHR11751:SF407|SM00345|SSF46785|SSF53383
ALIDE_RS16995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004711	Benzoate transporter	GO:0016021|GO:0042919|GO:0042925	PF03594|PTHR30199|PTHR30199:SF0|TIGR00843
ALIDE_RS17000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001608|IPR011078|IPR029066	Alanine racemase, N-terminal|PLP-binding barrel|Uncharacterised protein family UPF0001		G3DSA:3.20.20.10|PF01168|PIRSF004848|PTHR10146|SSF51419|TIGR00044
ALIDE_RS17005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017926|IPR029062	Class I glutamine amidotransferase-like|Glutamine amidotransferase		G3DSA:3.40.50.880|PF00117|PTHR11922|PTHR11922:SF11|SSF52317
ALIDE_RS17010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009057|IPR018060|IPR032687	DNA binding HTH domain, AraC-type|HTH-type transcriptional regulator AraC-type, N-terminal|Homeodomain-like	GO:0003677|GO:0003700|GO:0006355|GO:0043565	G3DSA:1.10.10.60|PF12625|PF12833|PTHR11019|PTHR11019:SF52|SM00342|SSF46689
ALIDE_RS17015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003953|IPR023753	FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF00890|PTHR11632|PTHR11632:SF38|SSF51905
ALIDE_RS17020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000262|IPR008259|IPR012133|IPR013785	Aldolase-type TIM barrel|Alpha-hydroxy acid dehydrogenase, FMN-dependent|FMN-dependent alpha-hydroxy acid dehydrogenase, active site|FMN-dependent dehydrogenase	GO:0003824|GO:0010181|GO:0016491|GO:0055114	G3DSA:3.20.20.70|PF01070|PIRSF000138|PS00557|PTHR10578|PTHR10578:SF65|SSF51395
ALIDE_RS17025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011766|IPR012001|IPR029035|IPR029061	DHS-like NAD/FAD-binding domain|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding|Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	GO:0003824|GO:0030976	G3DSA:3.40.50.970|PF02775|PF02776|PTHR18968|PTHR18968:SF86|SSF52467|SSF52518
ALIDE_RS17035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021853	Protein of unknown function DUF3460		PF11943
ALIDE_RS17040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003768	Segregation and condensation protein A		MF_01805|PF02616|PTHR33969|PTHR33969:SF2
ALIDE_RS17045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003779|IPR004675|IPR010195|IPR029032	AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like|Uncharacterised peroxidase-related	GO:0051920|GO:0055114	G3DSA:1.20.1290.10|G3DSA:1.20.5.810|PF02627|PTHR35446|SSF69118|TIGR00778|TIGR01926
ALIDE_RS17050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009057|IPR018060|IPR018062|IPR032783	AraC-type transcription regulator, ligand-binding domain|DNA binding HTH domain, AraC-type|HTH domain AraC-type, conserved site|Homeodomain-like	GO:0003677|GO:0003700|GO:0006355|GO:0043565	G3DSA:1.10.10.60|PF12833|PF12852|PS00041|PTHR11019|PTHR11019:SF77|SM00342|SSF46689
ALIDE_RS17055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003953|IPR005288|IPR015939|IPR023753|IPR027477	FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain|Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal|L-aspartate oxidase|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	GO:0005737|GO:0008734|GO:0009435|GO:0016491|GO:0055114	G3DSA:1.20.58.100|G3DSA:3.50.50.60|G3DSA:3.90.700.10|PF00890|PF02910|PR00368|PTHR11632|PTHR11632:SF27|SSF46977|SSF51905|SSF56425|TIGR00551
ALIDE_RS17060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004220|IPR014347	5-carboxymethyl-2-hydroxymuconate isomerase|Tautomerase/MIF superfamily	GO:0008704|GO:0019439	G3DSA:3.30.429.10|PF02962|PTHR37950|PTHR37950:SF1|SSF55331
ALIDE_RS17065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001544|IPR005801|IPR005802|IPR015890|IPR019999	ADC synthase|Aminotransferase class IV|Anthranilate synthase component I-like|Chorismate-utilising enzyme, C-terminal|Para-aminobenzoate synthase, component I	GO:0003824|GO:0008152|GO:0009058|GO:0009396	G3DSA:3.20.10.10|G3DSA:3.30.470.10|G3DSA:3.60.120.10|PF00425|PF01063|PR00095|PTHR11236|PTHR11236:SF18|SSF56322|SSF56752|TIGR00553
ALIDE_RS17070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003473	Quinolinate synthetase A	GO:0008987|GO:0009435|GO:0051539	PF02445|PTHR30573|SSF142754|TIGR00550
ALIDE_RS17075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002638|IPR004393|IPR013785|IPR022412|IPR027277	Aldolase-type TIM barrel|Nicotinate-nucleotide pyrophosphorylase|Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD|Quinolinate phosphoribosyl transferase, C-terminal|Quinolinate phosphoribosyl transferase, N-terminal	GO:0003824|GO:0004514|GO:0009435|GO:0016763|GO:0019363	G3DSA:3.20.20.70|G3DSA:3.90.1170.20|PF01729|PF02749|PIRSF006250|PTHR32179|SSF51690|SSF54675|TIGR00078
ALIDE_RS17080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003700|IPR015813	Ketopantoate hydroxymethyltransferase|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824|GO:0003864|GO:0015940	G3DSA:3.20.20.60|MF_00156|PF02548|PIRSF000388|PTHR20881|SSF51621|TIGR00222
ALIDE_RS17085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003721|IPR014729	Pantoate-beta-alanine ligase|Rossmann-like alpha/beta/alpha sandwich fold	GO:0004592|GO:0015940	G3DSA:3.30.1300.10|G3DSA:3.40.50.620|MF_00158|PF02569|PTHR21299|PTHR21299:SF1|SSF52374|TIGR00018
ALIDE_RS17090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|SSF46785|SSF53850
ALIDE_RS17095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS17100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009197|IPR010799|IPR015995	Microcystin LR degradation protein MlrC|Microcystin LR degradation protein MlrC, C-terminal|Microcystin LR degradation protein MlrC, N-terminal		PF07171|PF07364|PIRSF012702
ALIDE_RS17105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002781	Transmembrane protein TauE-like	GO:0016021	PF01925
ALIDE_RS17110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1
ALIDE_RS17115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016186|IPR016187	C-type lectin fold|C-type lectin-like		G3DSA:3.10.100.10|SSF56436
ALIDE_RS17120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006109|IPR006168|IPR008927|IPR011128|IPR013328|IPR016040	6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|Glycerol-3-phosphate dehydrogenase, NAD-dependent|Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal|Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal|NAD(P)-binding domain	GO:0004367|GO:0005975|GO:0006072|GO:0009331|GO:0016491|GO:0016616|GO:0046168|GO:0051287|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|MF_00394|PF01210|PF07479|PIRSF000114|PR00077|PS00957|PTHR11728|PTHR11728:SF1|SSF48179|SSF51735
ALIDE_RS17125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003708	Bacterial protein export chaperone SecB	GO:0015031|GO:0051082|GO:0051262	G3DSA:3.10.420.10|MF_00821|PF02556|PR01594|PTHR36918|PTHR36918:SF1|SSF54611|TIGR00809
ALIDE_RS17130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002109|IPR011767|IPR011900|IPR012336|IPR014025	Glutaredoxin|Glutaredoxin active site|Glutaredoxin subgroup|Glutaredoxin, GrxC|Thioredoxin-like fold	GO:0009055|GO:0015035|GO:0045454	G3DSA:3.40.30.10|PF00462|PR00160|PS00195|PTHR10168|SSF52833|TIGR02181
ALIDE_RS17135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001763	Rhodanese-like domain		G3DSA:3.40.250.10|PF00581|PTHR12231|PTHR12231:SF138|SM00450|SSF52821
ALIDE_RS17140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001345|IPR005952|IPR013078|IPR029033	Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1|Phosphoglycerate mutase 1|Phosphoglycerate/bisphosphoglycerate mutase, active site	GO:0003824|GO:0004619|GO:0006096|GO:0008152|GO:0016868	G3DSA:3.40.50.1240|MF_01039|PF00300|PS00175|PTHR11931|SM00855|SSF53254|TIGR01258
ALIDE_RS17145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001478|IPR004447|IPR005151|IPR029045	C-terminal-processing peptidase S41A|ClpP/crotonase-like domain|PDZ domain|Tail specific protease	GO:0005515|GO:0006508|GO:0008236	G3DSA:2.30.42.10|G3DSA:3.30.750.44|G3DSA:3.90.226.10|PF03572|PF13180|PTHR32060|SM00228|SM00245|SSF50156|SSF52096|TIGR00225
ALIDE_RS17150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000594|IPR016040	NAD(P)-binding domain|THIF-type NAD/FAD binding fold	GO:0008641	G3DSA:3.40.50.720|PF00899|PTHR10953|PTHR10953:SF158|SSF69572
ALIDE_RS17155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR011006	CheY-like superfamily|Signal transduction response regulator, receiver domain	GO:0000160	G3DSA:3.40.50.2300|PF00072|SM00448|SSF52172
ALIDE_RS17160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000792|IPR001789|IPR011006|IPR011991|IPR016032	CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|PTHR26402|PTHR26402:SF458|SM00421|SM00448|SSF46894|SSF52172
ALIDE_RS17165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR007891|IPR011712	CHASE3|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain	GO:0000155|GO:0000160|GO:0016021|GO:0046983	G3DSA:3.30.565.10|PF02518|PF05227|PF07730|PTHR24421|PTHR24421:SF1|SM00387|SSF55874
ALIDE_RS17180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007055|IPR014004	BON domain|Transport-associated and nodulation domain, bacteria		PF04972|PTHR34606|SM00749
ALIDE_RS17185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001980|IPR004821|IPR014729	Coenzyme A biosynthesis protein|Cytidyltransferase-like domain|Rossmann-like alpha/beta/alpha sandwich fold	GO:0003824|GO:0004595|GO:0009058|GO:0015937	G3DSA:3.40.50.620|MF_00151|PF01467|PR01020|PTHR21342|PTHR21342:SF1|SSF52374|TIGR00125|TIGR01510
ALIDE_RS17190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004398|IPR029063	RNA methyltransferase, RsmD|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008168|GO:0031167	G3DSA:3.40.50.150|PF03602|PIRSF004553|PTHR18895|PTHR18895:SF60|SSF53335|TIGR00095
ALIDE_RS17195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007863|IPR011237|IPR011249	Metalloenzyme, LuxS/M16 peptidase-like|Peptidase M16 domain|Peptidase M16, C-terminal	GO:0003824|GO:0046872	G3DSA:3.30.830.10|PF05193|PTHR11851|PTHR11851:SF140|SSF63411
ALIDE_RS17200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007863|IPR011237|IPR011249|IPR011765	Metalloenzyme, LuxS/M16 peptidase-like|Peptidase M16 domain|Peptidase M16, C-terminal|Peptidase M16, N-terminal	GO:0003824|GO:0046872	G3DSA:3.30.830.10|PF00675|PF05193|PTHR11851|PTHR11851:SF136|SSF63411
ALIDE_RS17205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000897|IPR003593|IPR004390|IPR013822|IPR027417	AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Signal recognition particle, SRP54 subunit, GTPase domain|Signal recognition particle, SRP54 subunit, helical bundle|Signal-recognition particle receptor FtsY	GO:0005525|GO:0006614	G3DSA:1.20.120.140|G3DSA:3.40.50.300|MF_00920|PF00448|PF02881|PS00300|PTHR11564|PTHR11564:SF16|SM00382|SM00962|SM00963|SSF47364|SSF52540|TIGR00064
ALIDE_RS17210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|PTHR30126:SF2|SSF46785|SSF53850
ALIDE_RS17215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002220|IPR013785	Aldolase-type TIM barrel|DapA-like	GO:0003824|GO:0008152|GO:0016829	G3DSA:3.20.20.70|PF00701|PIRSF001365|PTHR12128|SM01130|SSF51569
ALIDE_RS17220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS17225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PTHR24322|SSF51735
ALIDE_RS17230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001354|IPR013342|IPR029017|IPR029065	Enolase C-terminal domain-like|Enolase N-terminal domain-like|Mandelate racemase/muconate lactonizing enzyme, C-terminal|Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase	GO:0003824|GO:0008152	G3DSA:3.20.20.120|G3DSA:3.30.390.10|PF13378|PTHR13794|PTHR13794:SF58|SM00922|SSF51604|SSF54826
ALIDE_RS17235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004323|IPR011322	Divalent ion tolerance protein, CutA|Nitrogen regulatory PII-like, alpha/beta	GO:0010038	G3DSA:3.30.70.830|PF03091|PTHR23419|SSF54913
ALIDE_RS17240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS17245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS17250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000573|IPR001030|IPR006249|IPR015928|IPR015931|IPR015932|IPR015937|IPR018136	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase family, 4Fe-4S cluster binding site|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/Iron-responsive element-binding protein 2|Aconitase/isopropylmalate dehydratase	GO:0008152	G3DSA:3.20.19.10|G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PF00694|PR00415|PS00450|PS01244|PTHR11670|PTHR11670:SF1|SSF52016|SSF53732|TIGR01341
ALIDE_RS17255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS17260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001638	Solute-binding protein  family 3/N-terminal domain of MltF		G3DSA:3.40.190.10|PF00497|SM00062|SSF53850
ALIDE_RS17265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011048|IPR015943|IPR019405	Cytochrome cd1-nitrite reductase-like, haem d1 domain|Lactonase, 7-bladed beta propeller|WD40/YVTN repeat-like-containing domain	GO:0005515	G3DSA:2.130.10.10|PF10282|PTHR30344|PTHR30344:SF1|SSF51004
ALIDE_RS17270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR002328|IPR011032|IPR013149|IPR013154|IPR016040|IPR020843	Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-type, conserved site|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PS00059|PTHR11695|PTHR11695:SF553|SM00829|SSF50129|SSF51735
ALIDE_RS17275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011234	Fumarylacetoacetase, C-terminal-related	GO:0003824|GO:0008152	G3DSA:3.90.850.10|PTHR30143|SSF56529
ALIDE_RS17285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF316|SM00448|SM00862|SSF52172
ALIDE_RS17290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	GO:0000155|GO:0007165	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PTHR24423|PTHR24423:SF354|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS17295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008217	Ccc1 family		PF01988|PTHR31851
ALIDE_RS17300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011577|IPR016174	Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane	GO:0009055|GO:0016020|GO:0016021|GO:0022904	PF01292|PTHR30529|PTHR30529:SF3|SSF81342
ALIDE_RS17305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR032317	RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF16576|PTHR30469|SSF111369|TIGR01730
ALIDE_RS17310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR004763|IPR027463	Acriflavin resistance protein|Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0006812|GO:0008324|GO:0016020|GO:0016021	G3DSA:1.10.3850.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF24|SSF82693|SSF82714|SSF82866|TIGR00914
ALIDE_RS17315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011322|IPR015867|IPR021634	Nitrogen regulatory PII-like, alpha/beta|Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal|Protein of unknown function DUF3240		G3DSA:3.30.70.120|PF11582|SSF54913
ALIDE_RS17320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423	Outer membrane efflux protein	GO:0005215|GO:0006810	G3DSA:1.20.1600.10|PF02321|SSF56954
ALIDE_RS17330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000943|IPR007627|IPR007630|IPR009042|IPR011991|IPR012759|IPR013324|IPR013325|IPR014284	RNA polymerase sigma factor RpoH, proteobacteria|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 1.2|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 4|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987	G3DSA:1.10.10.10|G3DSA:1.10.601.10|MF_00961|PF00140|PF04542|PF04545|PR00046|PS00715|PS00716|PTHR30376|SSF88659|SSF88946|TIGR02392|TIGR02937
ALIDE_RS17335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32
ALIDE_RS17340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003782|IPR012336	Copper chaperone SCO1/SenC|Thioredoxin-like fold		G3DSA:3.40.30.10|PF02630|PTHR12151|SSF52833
ALIDE_RS17345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000537|IPR006369|IPR030470	Protohaem IX farnesyltransferase|UbiA prenyltransferase conserved site|UbiA prenyltransferase family	GO:0004659|GO:0008495|GO:0016021|GO:0048034	MF_00154|PF01040|PS00943|PTHR11048|TIGR01473
ALIDE_RS17350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003780	COX15/CtaA family	GO:0006784|GO:0016021|GO:0016627|GO:0055114	PF02628|PTHR35457|PTHR35457:SF1
ALIDE_RS17355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012336	Thioredoxin-like fold		G3DSA:3.40.30.10|SSF52833
ALIDE_RS17360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002994	Surfeit locus 1/Shy1	GO:0016020	PF02104
ALIDE_RS17365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021313	Protein of unknown function DUF2909		PF11137
ALIDE_RS17370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000298|IPR013833|IPR024791	Cytochrome c oxidase subunit III|Cytochrome c oxidase subunit III domain|Cytochrome c oxidase, subunit III, 4-helical bundle	GO:0004129|GO:0015002|GO:0016020|GO:0019646|GO:0022904	G3DSA:1.10.287.70|G3DSA:1.20.120.80|PF00510|PTHR11403|PTHR11403:SF0|SSF81452
ALIDE_RS17375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021344	Protein of unknown function DUF2970		PF11174
ALIDE_RS17380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007533|IPR023471	Cytochrome c oxidase assembly protein CtaG/Cox11|Cytochrome c oxidase assembly protein CtaG/Cox11, domain	GO:0005507	G3DSA:2.60.370.10|PF04442|PIRSF005413|PTHR21320|PTHR21320:SF3|SSF110111
ALIDE_RS17385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000883|IPR014241|IPR023615|IPR023616	Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I bacterial type|Cytochrome c oxidase, subunit I domain|Cytochrome c oxidase, subunit I, copper-binding site	GO:0004129|GO:0005506|GO:0005507|GO:0005886|GO:0006810|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0022900|GO:0055114	G3DSA:1.20.210.10|PF00115|PR01165|PS00077|PTHR10422|PTHR10422:SF27|SSF81442|TIGR02891
ALIDE_RS17390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001505|IPR002429|IPR008972|IPR009056|IPR011759|IPR014222	Copper centre Cu(A)|Cupredoxin|Cytochrome C oxidase subunit II, transmembrane domain|Cytochrome c oxidase subunit II C-terminal|Cytochrome c oxidase, subunit II|Cytochrome c-like domain	GO:0004129|GO:0005507|GO:0009055|GO:0016020|GO:0016021|GO:0016491|GO:0020037|GO:0022900	G3DSA:1.10.287.90|G3DSA:1.10.760.10|G3DSA:2.60.40.420|PF00116|PF02790|PF13442|PR01166|PS00078|PTHR22888|PTHR22888:SF2|SSF46626|SSF49503|SSF81464|TIGR02866
ALIDE_RS17395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PTHR13090|PTHR13090:SF3|SSF53335
ALIDE_RS17400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000836|IPR029057	Phosphoribosyltransferase domain|Phosphoribosyltransferase-like	GO:0009116	G3DSA:3.40.50.2020|PF00156|PTHR11907|PTHR11907:SF9|SSF53271
ALIDE_RS17405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001537|IPR016914|IPR029026|IPR029028	Alpha/beta knot methyltransferases|tRNA (cytidine/uridine-2'-O-)-methyltransferase|tRNA (guanine-N1-)-methyltransferase, N-terminal|tRNA/rRNA methyltransferase, SpoU type	GO:0001510|GO:0003723|GO:0006396|GO:0008168|GO:0008173	G3DSA:3.40.1280.10|MF_01885|PF00588|PIRSF029256|PTHR12029|PTHR12029:SF31|SSF75217
ALIDE_RS17410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF5|SSF46785|SSF53850
ALIDE_RS17415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025421	Protein of unknown function DUF4148		PF13663
ALIDE_RS17420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002586|IPR027417	CobQ/CobB/MinD/ParA nucleotide binding domain|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF01656|PIRSF009320|PTHR13696|SSF52540
ALIDE_RS17425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001123	Lysine-type exporter protein (LYSE/YGGA)	GO:0006865|GO:0016020	PF01810|PIRSF006324|PTHR30086|PTHR30086:SF14
ALIDE_RS17430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003148|IPR004771|IPR006153|IPR016040	Cation/H+ exchanger|K+/H+ exchanger|NAD(P)-binding domain|Regulator of K+ conductance, N-terminal	GO:0006812|GO:0006813|GO:0008324|GO:0015299|GO:0016021|GO:0055085	G3DSA:3.40.50.720|PF00999|PF02254|PTHR16254|PTHR16254:SF6|SSF51735|TIGR00932
ALIDE_RS17435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR011663|IPR011991|IPR028978	Chorismate pyruvate-lyase/UbiC transcription regulator-associated  domain|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|PTHR11751|SM00345|SM00866|SSF46785|SSF64288
ALIDE_RS17440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015813|IPR018523	Isocitrate lyase/phosphorylmutase, conserved site|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824|GO:0008152	G3DSA:3.20.20.60|PF13714|PS00161|PTHR21631|PTHR21631:SF12|SSF51621
ALIDE_RS17445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001030|IPR004430|IPR015931|IPR015932|IPR015937|IPR018136	3-isopropylmalate dehydratase, large subunit|Aconitase family, 4Fe-4S cluster binding site|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3|Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2|Aconitase/isopropylmalate dehydratase	GO:0003861|GO:0008152|GO:0009098|GO:0051539	G3DSA:3.30.499.10|G3DSA:3.40.1060.10|PF00330|PR00415|PS00450|PS01244|PTHR11670|PTHR11670:SF12|SSF53732|TIGR00170
ALIDE_RS17450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000573|IPR004431|IPR015928|IPR015937	3-isopropylmalate dehydratase, small subunit|Aconitase A/isopropylmalate dehydratase small subunit, swivel domain|Aconitase/3-isopropylmalate dehydratase, swivel|Aconitase/isopropylmalate dehydratase	GO:0003861|GO:0008152|GO:0009098|GO:0009316	G3DSA:3.20.19.10|PF00694|PTHR11670|PTHR11670:SF38|SSF52016|TIGR00171
ALIDE_RS17455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS17460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007400	PrpF protein		G3DSA:3.10.310.10|PF04303|PTHR30349|PTHR30349:SF21|SSF54506
ALIDE_RS17465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS17470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS17475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064|IPR019546	Bordetella uptake gene|Twin-arginine translocation pathway, signal sequence, bacterial/archaeal	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850|TIGR01409
ALIDE_RS17480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002933|IPR011650|IPR017439	Amidohydrolase|Peptidase M20|Peptidase M20, dimerisation domain	GO:0008152|GO:0016787	G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF005962|PTHR11014|PTHR11014:SF63|SSF53187|SSF55031|TIGR01891
ALIDE_RS17485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS17490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005119|IPR011991	LysR, substrate-binding|Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF03466|PTHR30118|PTHR30118:SF8|SSF53850
ALIDE_RS17495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS17500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24322|SSF51735
ALIDE_RS17505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR012793|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617	Beta-ketoadipyl CoA thiolase|Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747|GO:0019619	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|PTHR18919|PTHR18919:SF91|SSF53901|TIGR01930|TIGR02430
ALIDE_RS17510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004164|IPR004165|IPR012791	3-oxoacid CoA-transferase, subunit B|Coenzyme A transferase active site|Coenzyme A transferase family I	GO:0008152|GO:0008410	G3DSA:3.40.810.20|PF01144|PS01274|PTHR13707|SM00882|SSF100950|TIGR02428
ALIDE_RS17515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004163|IPR004165|IPR012792	3-oxoacid CoA-transferase, subunit A|Coenzyme A transferase binding site|Coenzyme A transferase family I	GO:0008152|GO:0008410	G3DSA:3.40.1080.10|PF01144|PS01273|PTHR13707|SM00882|SSF100950|TIGR02429
ALIDE_RS17520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR012794|IPR014757|IPR029016	Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR|GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355|GO:0045893|GO:0046278	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF10|SM00346|SSF46785|SSF55781|TIGR02431
ALIDE_RS17525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014993	Protein of unknown function DUF1841		PF08897
ALIDE_RS17530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006015|IPR006016|IPR014729	Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA	GO:0006950	G3DSA:3.40.50.620|PF00582|PR01438|PTHR31964|PTHR31964:SF42|SSF52402
ALIDE_RS17535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009056|IPR024167	Cytochrome c-like domain|Cytochrome c4	GO:0005506|GO:0009055|GO:0020037|GO:0042597	G3DSA:1.10.760.10|PF13442|PIRSF000005|PTHR33751|PTHR33751:SF3|SSF46626
ALIDE_RS17540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR003959|IPR027417	AAA+ ATPase domain|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase	GO:0005524	G3DSA:3.40.50.300|PF00004|PTHR22908|SM00382|SSF52540
ALIDE_RS17545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR016181	Acyl-CoA N-acyltransferase|GNAT domain	GO:0008080	G3DSA:3.40.630.30|PF13302|PTHR13256|PTHR13256:SF20|SSF55729
ALIDE_RS17550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS17555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR011663|IPR011991|IPR028978	Chorismate pyruvate-lyase/UbiC transcription regulator-associated  domain|Transcription regulator HTH, GntR|UbiC transcription regulator-associated|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.1410.10|PF00392|PF07702|PR00035|PTHR11751|SM00345|SM00866|SSF46785|SSF64288
ALIDE_RS17560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS17565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF285|SSF47203|SSF56645
ALIDE_RS17570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR014748|IPR018376|IPR029045	ClpP/crotonase-like domain|Crontonase, C-terminal|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|SSF52096
ALIDE_RS17575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005656	MmgE/PrpD	GO:0016829	G3DSA:3.30.1330.120|PF03972|PTHR16943|PTHR16943:SF8|SSF103378
ALIDE_RS17580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008912	Uncharacterised protein family CoxE-like		PF05762
ALIDE_RS17585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000184	Bacterial surface antigen (D15)	GO:0019867	G3DSA:2.40.160.50|PF01103|PTHR12815|PTHR12815:SF12
ALIDE_RS17590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007452	Translocation and assembly module TamB		PF04357|PTHR36985
ALIDE_RS17605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982	Lambda repressor-like, DNA-binding domain	GO:0003677	G3DSA:1.10.260.40|PF13560|SSF47413
ALIDE_RS17620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023346	Lysozyme-like domain		G3DSA:1.10.530.10|PTHR34408|SSF53955
ALIDE_RS17645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014766	Carboxypeptidase, regulatory domain		G3DSA:2.60.40.1120
ALIDE_RS17650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008979	Galactose-binding domain-like		G3DSA:2.60.120.260
ALIDE_RS17655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010090	Phage tail tape measure protein		PF10145|TIGR01760
ALIDE_RS17675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005564	Major capsid protein GpE	GO:0019028	PF03864
ALIDE_RS17680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004195	Head decoration protein D	GO:0019028	PF02924
ALIDE_RS17685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002142|IPR029045	ClpP/crotonase-like domain|Peptidase S49	GO:0006508|GO:0008233	G3DSA:3.90.226.10|PF01343|PTHR33209|PTHR33209:SF4|SSF52096
ALIDE_RS17690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006429	Phage portal protein, lambda family	GO:0005198|GO:0019068	PF05136|TIGR01539
ALIDE_RS17700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009057|IPR014875	Homeodomain-like|Mor transcription activator	GO:0003677	G3DSA:1.10.10.60|PF08765|SSF46689
ALIDE_RS17705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008866	Bacteriophage lambda, GpA		PF05876|PTHR34413|PTHR34413:SF2
ALIDE_RS17750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001845|IPR011991	HTH ArsR-type DNA-binding domain|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|PF01022|SSF46785
ALIDE_RS17765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982	Lambda repressor-like, DNA-binding domain	GO:0003677	G3DSA:1.10.260.40|SSF47413
ALIDE_RS17860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000477	Reverse transcriptase domain		PF00078|SSF56672
ALIDE_RS17865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011101	Protein of unknown function DUF5131		PF07505
ALIDE_RS17875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001525|IPR029063	C-5 cytosine methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008168	G3DSA:3.40.50.150|PF00145|PR00105|PTHR10629|PTHR10629:SF32|SSF53335
ALIDE_RS17885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762	DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.443.10|PF00589|PTHR30349|PTHR30349:SF20|SSF56349
ALIDE_RS17910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003780	COX15/CtaA family	GO:0006784|GO:0016021|GO:0016627|GO:0055114	PF02628|PTHR35457|PTHR35457:SF1
ALIDE_RS17915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008972	Cupredoxin		G3DSA:2.60.40.420|PTHR22888|PTHR22888:SF12|SSF49503
ALIDE_RS17920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000883|IPR023616	Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I domain	GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114	G3DSA:1.20.210.10|PF00115|PR01165|PTHR10422|PTHR10422:SF17|SSF81442
ALIDE_RS17925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000537|IPR006369	Protohaem IX farnesyltransferase|UbiA prenyltransferase family	GO:0004659|GO:0008495|GO:0016021|GO:0048034	MF_00154|PF01040|PTHR11048|TIGR01473
ALIDE_RS17930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003782|IPR012336	Copper chaperone SCO1/SenC|Thioredoxin-like fold		G3DSA:3.40.30.10|PF02630|PTHR12151|SSF52833
ALIDE_RS17935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003813|IPR016174|IPR017896|IPR017900|IPR027387	4Fe-4S ferredoxin, iron-sulphur binding, conserved site|4Fe-4S ferredoxin-type, iron-sulphur binding domain|Cytochrome b/b6-like domain|Di-haem cytochrome, transmembrane|Methyl-viologen-reducing hydrogenase, delta subunit	GO:0015948|GO:0016020|GO:0022904|GO:0055114	G3DSA:1.20.810.10|PF00033|PF02662|PF12838|PS00198|SSF54862|SSF81342
ALIDE_RS17945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000883|IPR023616	Cytochrome c oxidase subunit I|Cytochrome c oxidase, subunit I domain	GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114	G3DSA:1.20.210.10|PF00115|SSF81442
ALIDE_RS17950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001041|IPR001221|IPR001433|IPR006058|IPR008333|IPR012675|IPR016174|IPR017938|IPR027387	2Fe-2S ferredoxin, iron-sulphur binding site|2Fe-2S ferredoxin-type iron-sulfur binding domain|Beta-grasp domain|Cytochrome b/b6-like domain|Di-haem cytochrome, transmembrane|Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel	GO:0009055|GO:0016020|GO:0016491|GO:0022904|GO:0051536|GO:0051537|GO:0055114	G3DSA:1.20.810.10|G3DSA:2.40.30.10|G3DSA:3.10.20.30|G3DSA:3.40.50.80|PF00033|PF00111|PF00175|PF00970|PR00410|PS00197|PTHR19370|PTHR19370:SF68|SSF52343|SSF54292|SSF63380|SSF81342
ALIDE_RS17955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001736|IPR025202	Phospholipase D-like domain|Phospholipase D/Transphosphatidylase	GO:0003824	G3DSA:3.30.870.10|PF13091|PTHR21248|PTHR21248:SF9|SM00155|SSF56024
ALIDE_RS17960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR004358	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|PTHR24423|PTHR24423:SF474|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS17965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF279|SM00448|SM00862|SSF52172
ALIDE_RS17970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001478|IPR001940|IPR009003|IPR011782	PDZ domain|Peptidase S1, PA clan|Peptidase S1C|Peptidase S1C, Do	GO:0004252|GO:0005515|GO:0006508	G3DSA:2.30.42.10|G3DSA:2.40.10.10|PF13180|PF13365|PR00834|PTHR22939|PTHR22939:SF98|SM00228|SSF50156|SSF50494|TIGR02037
ALIDE_RS17975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006659|IPR006660|IPR012336	Arsenate reductase|Arsenate reductase-like|Thioredoxin-like fold	GO:0008794|GO:0055114	G3DSA:3.40.30.10|PF03960|PTHR30041|PTHR30041:SF4|SSF52833|TIGR00014
ALIDE_RS17980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30183|PTHR30183:SF2|SSF161098
ALIDE_RS17985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR008995|IPR013611|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Transport-associated OB, type 2	GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0016887|GO:0043190	G3DSA:3.40.50.300|PF00005|PF08402|PS00211|PTHR24220|PTHR24220:SF282|SM00382|SSF50331|SSF52540
ALIDE_RS17990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002123	Phospholipid/glycerol acyltransferase	GO:0008152|GO:0016746	G3DSA:3.40.1130.10|PF01553|PTHR10434|PTHR10434:SF8|SM00563|SSF69593
ALIDE_RS17995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004722|IPR011059|IPR013108|IPR032466	Amidohydrolase 3|Dihydroorotase|Metal-dependent hydrolase|Metal-dependent hydrolase, composite domain	GO:0004151|GO:0006221|GO:0016810|GO:0046872	G3DSA:2.30.40.10|G3DSA:3.20.20.140|PF07969|PTHR11647|PTHR11647:SF70|SSF51338|SSF51556|TIGR00857
ALIDE_RS18000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002082|IPR006130|IPR006131|IPR006132	Aspartate carbamoyltransferase|Aspartate/ornithine carbamoyltransferase|Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain|Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding	GO:0004070|GO:0006207|GO:0006520|GO:0016597|GO:0016743	G3DSA:3.40.50.1370|MF_00001|PF00185|PF02729|PR00100|PR00101|PS00097|PTHR11405|PTHR11405:SF16|SSF53671|TIGR00670
ALIDE_RS18005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000836|IPR029057	Phosphoribosyltransferase domain|Phosphoribosyltransferase-like	GO:0009116	G3DSA:3.40.50.2020|PF00156|PTHR11608|SSF53271
ALIDE_RS18010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005227|IPR006641|IPR012337	Putative pre-16S rRNA nuclease|Ribonuclease H-like domain|YqgF/RNase H-like domain	GO:0003676|GO:0006139|GO:0006364	G3DSA:3.30.420.140|MF_00651|PF03652|PTHR33317|SM00732|SSF53098|TIGR00250
ALIDE_RS18015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003774	Protein of unknown function UPF0301		G3DSA:3.30.70.1300|G3DSA:3.40.1740.10|MF_00758|PF02622|PTHR30327|PTHR30327:SF1|SSF143456
ALIDE_RS18020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR002545|IPR003594|IPR003661|IPR004105|IPR004358|IPR008207|IPR011006	CheW-like domain|CheY-like superfamily|Histidine kinase  CheA-like, homodimeric domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain	GO:0000155|GO:0000160|GO:0004673|GO:0004871|GO:0005737|GO:0006935|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.560|G3DSA:1.20.120.160|G3DSA:2.30.30.40|G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF01584|PF01627|PF02518|PF02895|PR00344|PTHR22617|PTHR22617:SF20|SM00073|SM00260|SM00387|SM00448|SM01231|SSF47226|SSF47384|SSF50341|SSF52172|SSF55874
ALIDE_RS18025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004089|IPR004090|IPR029095	Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain|NarX-like, N-terminal	GO:0004871|GO:0006935|GO:0007165|GO:0016020	G3DSA:1.10.287.950|PF00015|PF13675|PR00260|PTHR32089|PTHR32089:SF43|SM00283|SSF58104
ALIDE_RS18030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002545	CheW-like domain	GO:0004871|GO:0006935|GO:0007165	PF01584|SM00260|SSF50341
ALIDE_RS18035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR011006	CheY-like superfamily|Signal transduction response regulator, receiver domain	GO:0000160	G3DSA:3.40.50.2300|PF00072|PTHR26402|SM00448|SSF52172
ALIDE_RS18040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR011006	CheY-like superfamily|Signal transduction response regulator, receiver domain	GO:0000160	G3DSA:3.40.50.2300|PF00072|PTHR26402|PTHR26402:SF568|SM00448|SSF52172
ALIDE_RS18045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013749|IPR029056	Pyridoxamine kinase/Phosphomethylpyrimidine kinase|Ribokinase-like		G3DSA:3.40.1190.20|PF08543|PTHR20858|PTHR20858:SF17|SSF53613
ALIDE_RS18050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004639|IPR005814|IPR015421|IPR015422|IPR015424	Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2|Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase	GO:0003824|GO:0008483|GO:0030170|GO:0033014|GO:0042286	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_00375|PF00202|PTHR11986|PTHR11986:SF5|SSF53383|TIGR00713
ALIDE_RS18055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002695|IPR011607|IPR016193|IPR024051	AICAR transformylase domain|AICARFT/IMPCHase bienzyme|Cytidine deaminase-like|Methylglyoxal synthase-like domain	GO:0003824|GO:0003937|GO:0004643|GO:0006164	G3DSA:3.40.140.20|G3DSA:3.40.50.1380|MF_00139|PF01808|PF02142|PIRSF000414|PTHR11692|PTHR11692:SF2|SM00798|SM00851|SSF52335|SSF53927|TIGR00355
ALIDE_RS18060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002197|IPR005412|IPR009057	DNA binding HTH domain,  Fis-type|DNA-binding protein Fis|Homeodomain-like	GO:0003677|GO:0006355|GO:0043565	G3DSA:1.10.10.60|PF02954|PIRSF002097|PR01590|PTHR32071|SSF46689
ALIDE_RS18065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001269|IPR004652|IPR013785|IPR018517|IPR024036|IPR032887	Aldolase-type TIM barrel|tRNA-dihydrouridine synthase|tRNA-dihydrouridine synthase B|tRNA-dihydrouridine synthase, TIM-barrel, NifR3|tRNA-dihydrouridine synthase, conserved site|tRNA-dihydrouridine synthase, putative, C-terminal	GO:0002943|GO:0003824|GO:0008033|GO:0016491|GO:0017150|GO:0050660|GO:0055114	G3DSA:1.10.1200.80|G3DSA:3.20.20.70|MF_02042|PF01207|PIRSF006621|PS01136|PTHR11082|PTHR11082:SF25|SSF51395|TIGR00737
ALIDE_RS18070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR032818	DedA family		PTHR30353|PTHR30353:SF12
ALIDE_RS18075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30126|PTHR30126:SF3|SSF46785|SSF53850
ALIDE_RS18080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS18085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011650|IPR017145|IPR017439	Amidohydrolase|Aminobenzoyl-glutamate utilization protein B|Peptidase M20, dimerisation domain	GO:0016787	G3DSA:3.40.630.10|PF07687|PIRSF037227|PTHR30575|PTHR30575:SF5|SSF53187|SSF55031|TIGR01891
ALIDE_RS18090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002823	Protein of unknown function DUF112, transmembrane		PF01970|PTHR35342|PTHR35342:SF2
ALIDE_RS18095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009936	Protein of unknown function DUF1468		PF07331
ALIDE_RS18100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003660|IPR003661	HAMP domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	GO:0000155|GO:0004871|GO:0007165|GO:0016021	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00672|PF02518|PTHR24423|SM00304|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS18105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF578|SM00448|SM00862|SSF52172
ALIDE_RS18110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004396|IPR006073|IPR012675|IPR012676|IPR013029|IPR023192|IPR027417	Beta-grasp domain|Domain of unknown function DUF933|GTP binding domain|P-loop containing nucleoside triphosphate hydrolase|Ribosome-binding ATPase YchF/Obg-like ATPase 1|TGS-like|TGS-like domain	GO:0005525	G3DSA:1.10.150.300|G3DSA:3.10.20.30|G3DSA:3.40.50.300|MF_00944|PF01926|PF06071|PIRSF006641|PR00326|PTHR23305|PTHR23305:SF12|SSF52540|SSF81271|TIGR00092
ALIDE_RS18115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002938|IPR018168|IPR023753	FAD-binding domain|FAD/NAD(P)-binding domain|Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site	GO:0016491|GO:0016709|GO:0055114|GO:0071949	G3DSA:3.50.50.60|PF01494|PR00420|PS01304|PTHR13789|PTHR13789:SF5|SSF51905
ALIDE_RS18120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009094|IPR012336|IPR017937|IPR018950	Disulphide bond isomerase, DsbC, N-terminal|Disulphide bond isomerase, DsbC/G, N-terminal|Thioredoxin, conserved site|Thioredoxin-like fold	GO:0045454	G3DSA:3.10.450.70|G3DSA:3.40.30.10|PF10411|PF13098|PS00194|PTHR35272|SSF52833|SSF54423
ALIDE_RS18125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001478|IPR007963|IPR024191	PDZ domain|Peptidase M61|Peptidase M61, catalytic domain	GO:0005515	G3DSA:2.30.42.10|PF05299|PIRSF016493|SSF50156|SSF55486
ALIDE_RS18130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR018376|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|PTHR11941:SF54|SSF52096
ALIDE_RS18145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002792|IPR005839|IPR006463|IPR006638|IPR007197|IPR013848|IPR020612|IPR023404|IPR023970	Elongator protein 3/MiaB/NifB|Methylthiotransferase|Methylthiotransferase, N-terminal|Methylthiotransferase, conserved site|Methylthiotransferase/radical SAM-type protein|Radical SAM|Radical SAM, alpha/beta horseshoe|TRAM domain|tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB	GO:0003824|GO:0005737|GO:0006400|GO:0009451|GO:0016740|GO:0043412|GO:0051536|GO:0051539	G3DSA:3.80.30.20|MF_01864|PF00919|PF01938|PF04055|PS01278|PTHR11918|PTHR11918:SF43|SM00729|SSF102114|TIGR00089|TIGR01574
ALIDE_RS18150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000897|IPR003593|IPR004125|IPR004780|IPR013822|IPR022941|IPR027417	AAA+ ATPase domain|P-loop containing nucleoside triphosphate hydrolase|Signal recognition particle protein Ffh|Signal recognition particle, SRP54 subunit|Signal recognition particle, SRP54 subunit, GTPase domain|Signal recognition particle, SRP54 subunit, M-domain|Signal recognition particle, SRP54 subunit, helical bundle	GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500	G3DSA:1.10.260.30|G3DSA:1.20.120.140|G3DSA:3.40.50.300|MF_00306|PF00448|PF02881|PF02978|PS00300|PTHR11564|PTHR11564:SF7|SM00382|SM00962|SM00963|SSF47364|SSF47446|SSF52540|TIGR00959
ALIDE_RS18155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002541	Cytochrome c assembly protein	GO:0017004|GO:0020037	PF01578|PTHR38034
ALIDE_RS18165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR003594|IPR003661	Histidine kinase-like ATPase, C-terminal domain|PAS domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	GO:0000155|GO:0007165	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF13188|PTHR24423|SM00387|SM00388|SSF47384|SSF55785|SSF55874
ALIDE_RS18170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR002078|IPR002197|IPR003593|IPR009057|IPR011006|IPR025662|IPR027417	AAA+ ATPase domain|CheY-like superfamily|DNA binding HTH domain,  Fis-type|Homeodomain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Signal transduction response regulator, receiver domain	GO:0000160|GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.40.50.2300|G3DSA:3.40.50.300|PF00072|PF00158|PF02954|PR01590|PS00675|PTHR32071|PTHR32071:SF28|SM00382|SM00448|SSF46689|SSF52172|SSF52540
ALIDE_RS18175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002502	N-acetylmuramoyl-L-alanine amidase domain	GO:0008745|GO:0009253	G3DSA:3.40.80.10|PF01510|PTHR30417|PTHR30417:SF4|SM00644|SSF55846
ALIDE_RS18180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000788|IPR005144|IPR008926|IPR013346|IPR013509	ATP-cone domain|Ribonucleotide reductase R1 subunit, N-terminal|Ribonucleotide reductase large subunit, C-terminal|Ribonucleotide reductase large subunit, N-terminal|Ribonucleotide reductase, class I , alpha subunit	GO:0004748|GO:0005524|GO:0006260|GO:0055114	G3DSA:3.20.70.20|PF00317|PF02867|PF03477|PR01183|PS00089|PTHR11573|SSF48168|SSF51998|TIGR02506
ALIDE_RS18185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000358|IPR009078|IPR012348	Ferritin-like superfamily|Ribonucleotide reductase small subunit|Ribonucleotide reductase-related	GO:0009186|GO:0016491|GO:0055114	G3DSA:1.10.620.20|PF00268|PIRSF000355|PTHR23409|PTHR23409:SF18|SSF47240
ALIDE_RS18190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005819	Histone H5	GO:0000786|GO:0003677|GO:0006334	PR00624
ALIDE_RS18195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002173|IPR011611|IPR029056	Carbohydrate kinase PfkB|Carbohydrate/puine kinase, PfkB, conserved site|Ribokinase-like	GO:0016773	G3DSA:3.40.1190.20|PF00294|PS00583|PTHR10584|PTHR10584:SF15|SSF53613
ALIDE_RS18200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011723|IPR021834	Protein of unknown function DUF3426|Zinc finger/thioredoxin putative		PF11906|PF13719|TIGR02098
ALIDE_RS18205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004498|IPR029063	Ribosomal protein L11 methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase	GO:0006479|GO:0008276	G3DSA:3.40.50.150|MF_00735|PF06325|PIRSF000401|PTHR18895|PTHR18895:SF69|SSF53335|TIGR00406
ALIDE_RS18210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004549|IPR005479|IPR005481|IPR005482|IPR011054|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Acetyl-CoA carboxylase, biotin carboxylase|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain|Rudiment single hybrid motif	GO:0003824|GO:0005524|GO:0016874	G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF02785|PF02786|PS00866|PS00867|PTHR18866|SM00878|SSF51246|SSF52440|SSF56059|TIGR00514
ALIDE_RS18215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR001249|IPR011053	Acetyl-CoA biotin carboxyl carrier|Biotin/lipoyl attachment|Single hybrid motif	GO:0003989|GO:0006633|GO:0009317	G3DSA:2.40.50.100|PF00364|PR01071|PTHR23151|SSF51230|TIGR00531
ALIDE_RS18220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012336|IPR013740|IPR017937	Redoxin|Thioredoxin, conserved site|Thioredoxin-like fold	GO:0016491|GO:0045454	G3DSA:3.40.30.10|PF08534|PS00194|PTHR10681|PTHR10681:SF107|SSF52833
ALIDE_RS18230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000713|IPR004101|IPR005757|IPR013221|IPR016040	Mur ligase, C-terminal|Mur ligase, N-terminal catalytic domain|Mur ligase, central|Murein peptide ligase|NAD(P)-binding domain	GO:0005524|GO:0009058|GO:0009252|GO:0016874|GO:0016881|GO:0071555	G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_02020|PF01225|PF02875|PF08245|PTHR23135|PTHR23135:SF17|SSF51984|SSF53244|SSF53623|TIGR01081
ALIDE_RS18240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006218|IPR006219|IPR013785	Aldolase-type TIM barrel|DAHP synthetase I/KDSA|DHAP synthase, class 1	GO:0003824|GO:0003849|GO:0009058|GO:0009073	G3DSA:3.20.20.70|PF00793|PIRSF001361|PTHR21225|SSF51569|TIGR00034
ALIDE_RS18245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002510|IPR025502	Metalloprotease TldD/PmbA|TldD	GO:0006508|GO:0008237	PF01523|PIRSF004919|PTHR30624|PTHR30624:SF4|SSF111283
ALIDE_RS18250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001182|IPR011923|IPR018365	Cell cycle protein FtsW/RodA|Cell cycle, FtsW / RodA / SpoVE, conserved site|Rod shape-determining protein RodA	GO:0007049|GO:0008360|GO:0016021|GO:0051301	PF01098|PS00428|PTHR30474|PTHR30474:SF1|TIGR02210
ALIDE_RS18255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008886|IPR029058	Alpha/Beta hydrolase fold|Uncharacterised protein family UPF0227/Esterase YqiA		G3DSA:3.40.50.1820|PF05728|PTHR35602|PTHR35602:SF3|SSF53474
ALIDE_RS18260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007016|IPR021797|IPR031726	O-antigen ligase-related|Protein glycosylation ligase domain|Virulence factor membrane-bound polymerase, C-terminal		PF04932|PF11846|PF15864
ALIDE_RS18265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002327|IPR009056	Cytochrome c, class IA/ IB|Cytochrome c-like domain	GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF00034|PR00604|PTHR11961|PTHR11961:SF5|SSF46626
ALIDE_RS18270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009078|IPR012347	Ferritin-like superfamily|Ferritin-related		G3DSA:1.20.1260.10|PF13668|SSF47240
ALIDE_RS18275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007627|IPR011991|IPR013249|IPR013324|IPR013325|IPR014284	RNA polymerase sigma factor 70, region 4 type 2|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987	G3DSA:1.10.10.10|G3DSA:1.10.1740.10|PF04542|PF08281|PTHR30173|PTHR30173:SF24|SSF88659|SSF88946|TIGR02937
ALIDE_RS18280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012340	Nucleic acid-binding, OB-fold		PF00773|PTHR23355|PTHR23355:SF5|SM00955|SSF50249
ALIDE_RS18285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006260	TonB, C-terminal	GO:0006810	G3DSA:3.30.1150.10|PF13103|SSF74653|TIGR01352
ALIDE_RS18290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006151|IPR011342|IPR013708|IPR016040|IPR022893	NAD(P)-binding domain|Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase|Shikimate dehydrogenase|Shikimate dehydrogenase family|Shikimate dehydrogenase substrate binding, N-terminal	GO:0004764|GO:0019632|GO:0050661|GO:0055114	G3DSA:3.40.192.10|G3DSA:3.40.50.720|MF_00222|PF01488|PF08501|PTHR21089|PTHR21089:SF2|SSF51735|SSF53223|TIGR00507
ALIDE_RS18295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001264|IPR011812|IPR023346	Glycosyl transferase, family 51|Lysozyme-like domain|Monofunctional biosynthetic peptidoglycan transglycosylase	GO:0009252|GO:0009274|GO:0016021|GO:0016763	G3DSA:1.10.3810.10|MF_00766|PF00912|PTHR30400|PTHR30400:SF0|SSF53955|TIGR02070
ALIDE_RS18305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337	Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF13683|PTHR32552|PTHR32552:SF26|SSF53098
ALIDE_RS18310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33609|PTHR33609:SF1|SSF46689
ALIDE_RS18315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002176|IPR012337|IPR020563	Crossover junction endodeoxyribonuclease RuvC|Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site|Ribonuclease H-like domain	GO:0003676|GO:0004520|GO:0006281|GO:0006310|GO:0008821	G3DSA:3.30.420.10|MF_00034|PF02075|PR00696|PS01321|PTHR30194|SSF53098|TIGR00228
ALIDE_RS18320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002577|IPR003033|IPR011991	Helix-turn-helix, HxlR type|SCP2 sterol-binding domain|Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|PF01638|PTHR33204|PTHR33204:SF9|SSF46785|SSF55718
ALIDE_RS18325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013216|IPR029063	Methyltransferase type 11|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008152|GO:0008168	G3DSA:3.40.50.150|PF08241|PTHR10108|PTHR10108:SF889|SSF53335
ALIDE_RS18330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002817|IPR025747	Phosphomethylpyrimidine synthase|ThiC-associated domain	GO:0009228|GO:0051536	MF_00089|PF01964|PF13667|PTHR30557|PTHR30557:SF1|TIGR00190
ALIDE_RS18335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004463|IPR011334|IPR015870|IPR020568	Ribosomal protein S5 domain 2-type fold|UDP-3-O-acyl N-acetylglucosamine deacetylase|UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal|UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal	GO:0008759|GO:0009245	G3DSA:3.30.1700.10|G3DSA:3.30.230.20|MF_00388|PF03331|PTHR33694|PTHR33694:SF1|SSF54211|TIGR00325
ALIDE_RS18340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR029016	GAF domain-like|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF09339|PTHR30136|SM00346|SSF46785|SSF55781
ALIDE_RS18345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007325	Kynurenine formamidase	GO:0004061|GO:0019441	G3DSA:3.50.30.50|PF04199|PTHR34861|SSF102198
ALIDE_RS18350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR025110	AMP-binding enzyme C-terminal domain|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PTHR24096|SSF56801
ALIDE_RS18355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24322|SM00822|SSF51735
ALIDE_RS18360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|PTHR30483:SF17|SSF53822
ALIDE_RS18365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS18370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS18375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000158|IPR003008|IPR008280|IPR018316|IPR020805|IPR024757	Cell division protein FtsZ|Cell division protein FtsZ, C-terminal|Cell division protein FtsZ, conserved site|Tubulin/FtsZ, 2-layer sandwich domain|Tubulin/FtsZ, C-terminal|Tubulin/FtsZ, GTPase domain	GO:0003924|GO:0005525|GO:0005737	G3DSA:3.30.1330.20|G3DSA:3.40.50.1440|MF_00909|PF00091|PF12327|PR00423|PS01135|PTHR30314|PTHR30314:SF3|SM00864|SM00865|SSF52490|SSF55307|TIGR00065
ALIDE_RS18380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003494|IPR018181|IPR020823	Cell division protein FtsA|Heat shock protein 70, conserved site|SHS2 domain inserted in FtsA	GO:0005515|GO:0007049	G3DSA:3.30.1490.110|G3DSA:3.30.420.40|G3DSA:3.90.640.10|MF_02033|PF02491|PF14450|PIRSF003101|PS01036|PTHR32432|PTHR32432:SF4|SM00842|SSF53067|TIGR01174
ALIDE_RS18385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005548|IPR013685|IPR026579	Cell division protein FtsQ|Cell division protein FtsQ/DivIB|Polypeptide-transport-associated, FtsQ-type	GO:0000917	MF_00911|PF03799|PF08478|PTHR35851|PTHR35851:SF1
ALIDE_RS18390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000291|IPR005905|IPR011095|IPR011127|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|D-alanine--D-alanine ligase|D-alanine--D-alanine ligase, C-terminal|D-alanine--D-alanine ligase, N-terminal domain|D-alanine--D-alanine ligase/VANA/B/C, conserved site|Pre-ATP-grasp domain	GO:0003824|GO:0005524|GO:0005737|GO:0008716	G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00047|PF01820|PF07478|PS00843|PS00844|PTHR23132|SSF52440|SSF56059|TIGR01205
ALIDE_RS18395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000713|IPR004101|IPR005758|IPR013221|IPR016040	Mur ligase, C-terminal|Mur ligase, N-terminal catalytic domain|Mur ligase, central|NAD(P)-binding domain|UDP-N-acetylmuramate--L-alanine ligase	GO:0005524|GO:0008763|GO:0009058|GO:0009252|GO:0016874	G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_00046|PF01225|PF02875|PF08245|PTHR23135|PTHR23135:SF5|SSF51984|SSF53244|SSF53623|TIGR01082
ALIDE_RS18400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004276|IPR006009|IPR007235	Glycosyl transferase, family 28, C-terminal|Glycosyltransferase family 28, N-terminal domain|N-acetylglucosaminyltransferase, MurG	GO:0005975|GO:0009252|GO:0016758|GO:0030259|GO:0050511	G3DSA:3.40.50.2000|MF_00033|PF03033|PF04101|PTHR21015|PTHR21015:SF22|SSF53756|TIGR01133
ALIDE_RS18405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001182|IPR013437	Cell cycle protein FtsW/RodA|Cell division protein FtsW	GO:0009252|GO:0016021|GO:0051301	MF_00913|PF01098|PTHR30474|PTHR30474:SF2|TIGR02614
ALIDE_RS18410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004101|IPR005762|IPR013221|IPR016040	Mur ligase, C-terminal|Mur ligase, central|NAD(P)-binding domain|UDP-N-acetylmuramoylalanine-D-glutamate ligase	GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0009058|GO:0016874|GO:0051301	G3DSA:3.40.1190.10|G3DSA:3.40.50.720|G3DSA:3.90.190.20|MF_00639|PF02875|PF08245|PTHR23135|PTHR23135:SF2|SSF51984|SSF53244|SSF53623|TIGR01087
ALIDE_RS18415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000715|IPR003524|IPR018480	Glycosyl transferase, family 4|Phospho-N-acetylmuramoyl-pentapeptide transferase|Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site	GO:0008963|GO:0016020|GO:0016021	MF_00038|PF00953|PF10555|PS01347|PS01348|PTHR22926|PTHR22926:SF5|TIGR00445
ALIDE_RS18420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000713|IPR004101|IPR005863|IPR013221	Mur ligase, C-terminal|Mur ligase, N-terminal catalytic domain|Mur ligase, central|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	GO:0005524|GO:0005737|GO:0009058|GO:0016874|GO:0047480|GO:0071555	G3DSA:3.40.1190.10|G3DSA:3.40.1390.10|G3DSA:3.90.190.20|MF_02019|PF01225|PF02875|PF08245|PTHR23135|PTHR23135:SF3|SSF53244|SSF53623|SSF63418|TIGR01143
ALIDE_RS18425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000713|IPR004101|IPR005761|IPR013221	Mur ligase, C-terminal|Mur ligase, N-terminal catalytic domain|Mur ligase, central|UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase	GO:0005524|GO:0005737|GO:0008360|GO:0009058|GO:0016874|GO:0016881|GO:0051301	G3DSA:3.40.1190.10|G3DSA:3.40.1390.10|G3DSA:3.90.190.20|MF_00208|PF01225|PF02875|PF08245|PTHR23135|PTHR23135:SF4|SSF53244|SSF53623|SSF63418|TIGR01085
ALIDE_RS18430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001460|IPR005311|IPR012338	Beta-lactamase/transpeptidase-like|Penicillin-binding protein, dimerisation domain|Penicillin-binding protein, transpeptidase	GO:0008658	G3DSA:3.40.710.10|G3DSA:3.90.1310.10|PF00905|PF03717|PTHR30627|PTHR30627:SF1|SSF56519|SSF56601
ALIDE_RS18435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011922	Cell division protein FtsL	GO:0007049|GO:0016021|GO:0051301	MF_00910|PF04999|PTHR37479|PTHR37479:SF1|TIGR02209
ALIDE_RS18440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002903|IPR023397|IPR029063	Ribosomal RNA small subunit methyltransferase H|S-adenosyl-L-methionine-dependent methyltransferase|S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain	GO:0008168	G3DSA:1.10.150.170|G3DSA:3.40.50.150|MF_01007|PF01795|PIRSF004486|PTHR11265|PTHR11265:SF0|SSF53335|SSF81799|TIGR00006
ALIDE_RS18445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003444|IPR020603	MraZ domain|Transcriptional regulator MraZ	GO:0003700|GO:0006355	MF_01008|PD006745|PF02381|PTHR34701|SSF89447|TIGR00242
ALIDE_RS18450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR003959|IPR004491|IPR019489|IPR027417	AAA+ ATPase domain|ATPase, AAA-type, core|Clp ATPase, C-terminal|Heat shock protein HslU|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011	G3DSA:1.10.8.10|G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_00249|PF00004|PF07724|PF10431|PTHR11262|PTHR11262:SF3|SM00382|SM01086|SSF52540|TIGR00390
ALIDE_RS18455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001353|IPR022281|IPR029055	ATP-dependent protease, HslV subunit|Nucleophile aminohydrolases, N-terminal|Proteasome, subunit alpha/beta	GO:0004298|GO:0005839|GO:0006508|GO:0009376|GO:0051603	G3DSA:3.60.20.10|MF_00248|PF00227|PIRSF039093|PTHR32194|SSF56235|TIGR03692
ALIDE_RS18460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002645	STAS domain		PF13466
ALIDE_RS18465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000962|IPR012784|IPR020458	RNA polymerase-binding transcription factor DksA|Zinc finger, DksA/TraR C4-type|Zinc finger, DksA/TraR C4-type conserved site	GO:0008270	MF_00926|PF01258|PS01102|PTHR33823|PTHR33823:SF2|SSF109635|SSF57716|TIGR02420
ALIDE_RS18470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003495|IPR011629|IPR027417	CobW/HypB/UreG, nucleotide-binding domain|Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.30.1220.10|G3DSA:3.40.50.300|PF02492|PF07683|PTHR13748|PTHR13748:SF43|SM00833|SSF52540|SSF90002
ALIDE_RS18475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021111	Hexameric tyrosine-coordinated heme protein (HTHP)		PF11534
ALIDE_RS18485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR009061|IPR010093|IPR011006	CheY-like superfamily|Putative DNA-binding domain|Signal transduction response regulator, receiver domain|SinI-like, DNA-binding domain	GO:0000160|GO:0003677	G3DSA:3.40.50.2300|PF00072|PF12728|PTHR26402|SM00448|SSF46955|SSF52172|TIGR01764
ALIDE_RS18490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR011006	CheY-like superfamily|Signal transduction response regulator, receiver domain	GO:0000160	G3DSA:3.40.50.2300|PF00072|PTHR26402|SM00448|SSF52172
ALIDE_RS18500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR009061|IPR010093|IPR011006	CheY-like superfamily|Putative DNA-binding domain|Signal transduction response regulator, receiver domain|SinI-like, DNA-binding domain	GO:0000160|GO:0003677	G3DSA:3.40.50.2300|PF00072|PF12728|PTHR26402|PTHR26402:SF578|SM00448|SSF46955|SSF52172|TIGR01764
ALIDE_RS18505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR011006	CheY-like superfamily|Signal transduction response regulator, receiver domain	GO:0000160	G3DSA:3.40.50.2300|PF00072|PTHR26402|SM00448|SSF52172
ALIDE_RS18510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003607|IPR006674	HD domain|HD/PDEase domain		G3DSA:1.10.3210.10|PF13487|SM00471|SSF109604
ALIDE_RS18515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR003594|IPR003661|IPR004358|IPR013656	Histidine kinase-like ATPase, C-terminal domain|PAS domain|PAS fold-4|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF08448|PR00344|PTHR24423|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229
ALIDE_RS18520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR004358	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PR00344|PTHR24423|PTHR24423:SF382|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS18525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003660|IPR004089|IPR004090|IPR024478	4HB MCP domain|Chemotaxis methyl-accepting receptor|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain	GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021	G3DSA:1.10.287.950|PF00015|PF00672|PF12729|PR00260|PTHR32089|PTHR32089:SF63|SM00283|SM00304|SSF58104
ALIDE_RS18530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR004107|IPR011010|IPR013762|IPR023009|IPR023109	DNA breaking-rejoining enzyme, catalytic core|Integrase, SAM-like, N-terminal|Integrase, catalytic domain|Integrase-like, catalytic domain|Integrase/recombinase, N-terminal|Tyrosine recombinase XerC/XerD	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.150.130|G3DSA:1.10.443.10|MF_01808|PF00589|PF02899|PTHR30349|PTHR30349:SF17|SSF56349
ALIDE_RS18535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007435	Protein of unknown function DUF484		PF04340|PTHR38765
ALIDE_RS18540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001653|IPR018510	Diaminopimelate epimerase, DapF|Diaminopimelate epimerase, active site	GO:0005737|GO:0008837|GO:0009089	G3DSA:3.10.310.10|MF_00197|PF01678|PS01326|PTHR31689|PTHR31689:SF0|SSF54506|TIGR00652
ALIDE_RS18545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001279|IPR015797	Metallo-beta-lactamase|NUDIX hydrolase domain-like	GO:0016787	G3DSA:3.60.15.10|G3DSA:3.90.79.10|PF00753|PTHR23131|SM00849|SSF55811|SSF56281
ALIDE_RS18550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002942|IPR020103	Pseudouridine synthase, catalytic domain|RNA-binding S4 domain	GO:0001522|GO:0003723|GO:0009451|GO:0009982	G3DSA:3.10.290.10|PF01479|PTHR21600|PTHR21600:SF21|SM00363|SSF55120|SSF55174
ALIDE_RS18560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001216|IPR001926|IPR005856|IPR005859	Cysteine synthase|Cysteine synthase CysK|Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site|Tryptophan synthase beta subunit-like PLP-dependent enzyme	GO:0004124|GO:0006535	G3DSA:3.40.50.1100|PF00291|PS00901|PTHR10314|PTHR10314:SF110|SSF53686|TIGR01136|TIGR01139
ALIDE_RS18565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001623	DnaJ domain		G3DSA:1.10.287.110|SSF46565
ALIDE_RS18570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023753|IPR028348	FAD dependent protein|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PIRSF038984|PTHR10617|PTHR10617:SF52|SSF51905
ALIDE_RS18575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003779|IPR029032	AhpD-like|Carboxymuconolactone decarboxylase-like	GO:0051920|GO:0055114	G3DSA:1.20.1290.10|PF02627|PTHR33570|PTHR33570:SF2|SSF69118
ALIDE_RS18580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30126|SSF46785|SSF53850
ALIDE_RS18585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005000|IPR011206|IPR015813	Citrate lyase beta subunit-like|HpcH/HpaI aldolase/citrate lyase domain|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0003824	G3DSA:3.20.20.60|PF03328|PIRSF015582|PTHR32308|PTHR32308:SF0|SSF51621
ALIDE_RS18590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS18595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS18600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006680|IPR032466	Amidohydrolase-related|Metal-dependent hydrolase	GO:0016787	G3DSA:3.20.20.140|PF04909|PTHR35563|PTHR35563:SF1|SSF51556
ALIDE_RS18605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS18610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000835|IPR011991|IPR023187	MarR-type HTH domain|Transcriptional regulator MarR-type, conserved site|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|PF12802|PS01117|PTHR33164|SM00347|SSF46785
ALIDE_RS18615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR017619|IPR020904	2-hydroxycyclohexanecarboxyl-CoA dehydrogenase|NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24322|SM00822|SSF51735|TIGR03206
ALIDE_RS18620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR010198|IPR014748|IPR017623|IPR018376|IPR029045	1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB|2-ketocyclohexanecarboxyl-CoA hydrolase|ClpP/crotonase-like domain|Crontonase, C-terminal|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152|GO:0008935|GO:0009234	G3DSA:1.10.12.10|G3DSA:3.90.226.10|MF_01934|PF00378|PS00166|PTHR11941|PTHR11941:SF20|SSF52096|TIGR03210
ALIDE_RS18625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786|IPR017620	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain|Cyclohexanecarboxyl-CoA dehydrogenase	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645|TIGR03207
ALIDE_RS18630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR017621|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Cyclohexanecarboxylate-CoA ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801|TIGR03208
ALIDE_RS18635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001308|IPR014729|IPR014730|IPR014731|IPR018206|IPR029035	DHS-like NAD/FAD-binding domain|Electron transfer flavoprotein alpha subunit/FixB|Electron transfer flavoprotein subunit alpha, conserved site|Electron transfer flavoprotein, alpha subunit, C-terminal|Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Rossmann-like alpha/beta/alpha sandwich fold	GO:0009055|GO:0050660	G3DSA:3.40.50.1220|G3DSA:3.40.50.620|PF00766|PF01012|PIRSF000089|PS00696|PTHR10909|PTHR10909:SF294|SM00893|SSF52402|SSF52467
ALIDE_RS18640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000049|IPR012255|IPR014729|IPR014730	Electron transfer flavoprotein, alpha/beta-subunit, N-terminal|Electron transfer flavoprotein, beta subunit|Electron transfer flavoprotein, beta-subunit, conserved site|Rossmann-like alpha/beta/alpha sandwich fold	GO:0009055	G3DSA:3.40.50.620|PF01012|PIRSF000090|PS01065|PTHR21294|PTHR21294:SF8|SM00893|SSF52402
ALIDE_RS18645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004136|IPR013785	Aldolase-type TIM barrel|Nitronate monooxygenase	GO:0003824|GO:0018580|GO:0055114	G3DSA:3.20.20.70|PF03060|PTHR32332|PTHR32332:SF22|SSF51412
ALIDE_RS18650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS18655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS18660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003736|IPR006683|IPR029069	HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR12418|PTHR12418:SF30|SSF54637|TIGR00369
ALIDE_RS18665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|SSF52096
ALIDE_RS18670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF145|SSF47203|SSF56645
ALIDE_RS18675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PTHR10909|PTHR10909:SF229|SSF47203|SSF56645
ALIDE_RS18680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020610|IPR020613|IPR020615|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase, conserved site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PS00737|PTHR18919|PTHR18919:SF14|SSF53901|TIGR01930
ALIDE_RS18685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR006108|IPR006176|IPR008927|IPR013328|IPR016040|IPR018376|IPR029045	3-hydroxyacyl-CoA dehydrogenase, C-terminal|3-hydroxyacyl-CoA dehydrogenase, NAD binding|6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|ClpP/crotonase-like domain|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site|NAD(P)-binding domain	GO:0003824|GO:0003857|GO:0006631|GO:0008152|GO:0016491|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|G3DSA:3.90.226.10|PF00378|PF00725|PF02737|PS00166|PTHR23309|PTHR23309:SF9|SSF48179|SSF51735|SSF52096
ALIDE_RS18690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF5|SSF46785|SSF53850
ALIDE_RS18695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009534|IPR010921|IPR011991	Protein of unknown function DUF1153|Trp repressor/replication initiator|Winged helix-turn-helix DNA-binding domain	GO:0043565	G3DSA:1.10.10.10|PF06627|SSF48295
ALIDE_RS18710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33215|PTHR33215:SF3|SSF46689
ALIDE_RS18715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337|IPR025948	HTH-like domain|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF00665|PF13276|PTHR32552|SSF53098
ALIDE_RS18720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR012337	Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0015074	G3DSA:3.30.420.10|PF13683|PTHR32552|PTHR32552:SF26|SSF53098
ALIDE_RS18725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057	Homeodomain-like|Transposase IS3/IS911family	GO:0003677|GO:0004803|GO:0006313	G3DSA:1.10.10.60|PF01527|PTHR33609|PTHR33609:SF1|SSF46689
ALIDE_RS18730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004291|IPR024463|IPR024474	Transposase TnpC, homeodomain|Transposase, IS66|Zinc-finger binding domain of transposase IS66		PF03050|PF13005|PF13007|PF13817|PTHR33678|PTHR33678:SF1
ALIDE_RS18735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008878	Transposase IS66, Orf2		PF05717|PTHR36455
ALIDE_RS18740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002514|IPR009057|IPR010921	Homeodomain-like|Transposase IS3/IS911family|Trp repressor/replication initiator	GO:0003677|GO:0004803|GO:0006313|GO:0043565	G3DSA:1.10.10.60|PF01527|SSF48295
ALIDE_RS18750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001915|IPR022919	Peptidase M48|Peptidase M48, protease HtpX, putative	GO:0004222|GO:0006508	G3DSA:3.30.2010.10|MF_00188|PF01435|PTHR10120|PTHR10120:SF19
ALIDE_RS18755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021390	Protein of unknown function DUF3025		PF11227
ALIDE_RS18760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002195|IPR004721|IPR006680|IPR032466	Amidohydrolase-related|Dihydroorotase homodimeric type|Dihydroorotase, conserved site|Metal-dependent hydrolase	GO:0004151|GO:0016787|GO:0016812|GO:0019856	G3DSA:3.20.20.140|MF_00219|PF01979|PIRSF001237|PS00482|PS00483|PTHR11647|PTHR11647:SF59|SSF51556|TIGR00856
ALIDE_RS18770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007438	Protein of unknown function DUF488		PF04343|PTHR36849|PTHR36849:SF1
ALIDE_RS18775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003779|IPR004675|IPR029032	AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like	GO:0051920|GO:0055114	G3DSA:1.20.1290.10|PF02627|PTHR34846|PTHR34846:SF2|SSF69118|TIGR00778
ALIDE_RS18780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR004602|IPR013815|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ATP-grasp fold, subdomain 1|P-loop containing nucleoside triphosphate hydrolase|UvrABC system subunit A	GO:0003824|GO:0005524|GO:0006289|GO:0009380|GO:0009381|GO:0016887	G3DSA:1.10.8.280|G3DSA:1.20.1580.10|G3DSA:3.30.1490.20|G3DSA:3.40.50.300|PS00211|PTHR32282|PTHR32282:SF2|SM00382|SSF52540|TIGR00630
ALIDE_RS18785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000709|IPR028081|IPR028082	Leu/Ile/Val-binding protein|Leucine-binding protein domain|Periplasmic binding protein-like I	GO:0006865	G3DSA:3.40.50.2300|PF13458|PR00337|PTHR30483|SSF53822
ALIDE_RS18790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023614	Porin domain		G3DSA:2.40.160.10|PF13609|SSF56935
ALIDE_RS18795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005828|IPR005829|IPR020846	Major facilitator superfamily domain|Major facilitator,  sugar transporter-like|Sugar transporter, conserved site	GO:0005215|GO:0016021|GO:0022857|GO:0055085	G3DSA:1.20.1250.20|PF00083|PS00217|PTHR23508|PTHR23508:SF7|SSF103473
ALIDE_RS18800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007436	Protein of unknown function DUF485		PF04341|PTHR38598
ALIDE_RS18805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001734|IPR018212	Sodium/solute symporter|Sodium/solute symporter, conserved site	GO:0005215|GO:0006810|GO:0016020|GO:0055085	PF00474|PS00456|PTHR11819|PTHR11819:SF13|TIGR00813
ALIDE_RS18810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012337|IPR013520	Exonuclease, RNase T/DNA polymerase III|Ribonuclease H-like domain	GO:0003676	G3DSA:3.30.420.10|PF00929|PTHR30231|PTHR30231:SF7|SM00479|SSF53098
ALIDE_RS18815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644|IPR005105|IPR014710|IPR018490|IPR018821	CBS domain|Cyclic nucleotide-binding-like|Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding|Protein-PII uridylyltransferase, N-terminal|RmlC-like jelly roll fold	GO:0008773	G3DSA:2.60.120.10|G3DSA:3.10.580.10|PF00571|PF03445|PF10335|PTHR11911|SM00116|SSF51206|SSF54631
ALIDE_RS18820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001853|IPR012336|IPR014440	DSBA-like thioredoxin domain|HCCA isomerase/glutathione S-transferase kappa|Thioredoxin-like fold	GO:0015035	G3DSA:3.40.30.10|PF01323|PIRSF006386|PTHR13887|SSF52833
ALIDE_RS18825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010710	Protein of unknown function DUF1289		PF06945|PTHR35175|PTHR35175:SF2
ALIDE_RS18830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007214	YbaK/aminoacyl-tRNA synthetase-associated domain	GO:0002161	G3DSA:3.90.960.10|PF04073|PTHR30411|SSF55826
ALIDE_RS18835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000138|IPR000891|IPR013785	Aldolase-type TIM barrel|Hydroxymethylglutaryl-CoA lyase, active site|Pyruvate carboxyltransferase	GO:0003824|GO:0004419	G3DSA:3.20.20.70|PF00682|PS01062|PTHR10277|PTHR10277:SF40|SSF51569
ALIDE_RS18840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006140|IPR016040	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain|NAD(P)-binding domain	GO:0051287|GO:0055114	G3DSA:3.40.50.720|PF02826|PTHR10996|PTHR10996:SF114|SSF51735
ALIDE_RS18845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR001882|IPR005479|IPR005481|IPR005482|IPR011053|IPR011054|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Biotin-binding site|Biotin/lipoyl attachment|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain|Rudiment single hybrid motif|Single hybrid motif	GO:0003824|GO:0005524	G3DSA:2.40.50.100|G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF00364|PF02785|PF02786|PS00188|PS00866|PS00867|PTHR18866|SM00878|SSF51230|SSF51246|SSF52440|SSF56059
ALIDE_RS18850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025196	Domain of unknown function DUF4126		PF13548
ALIDE_RS18855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR014748|IPR029045	ClpP/crotonase-like domain|Crontonase, C-terminal|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PTHR11941|PTHR11941:SF86|SSF52096
ALIDE_RS18860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000022|IPR029045	Carboxyl transferase|ClpP/crotonase-like domain		G3DSA:3.90.226.10|PF01039|PTHR22855|PTHR22855:SF35|SSF52096
ALIDE_RS18865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24095|SSF56801
ALIDE_RS18870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009057|IPR018060|IPR032687	DNA binding HTH domain, AraC-type|HTH-type transcriptional regulator AraC-type, N-terminal|Homeodomain-like	GO:0003677|GO:0003700|GO:0006355|GO:0043565	G3DSA:1.10.10.60|PF12625|PF12833|PTHR11019|PTHR11019:SF52|SM00342|SSF46689
ALIDE_RS18875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR004046|IPR010987|IPR012336	Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold	GO:0005515	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13417|PF14497|PTHR11260|PTHR11260:SF253|SSF47616|SSF52833
ALIDE_RS18880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000172|IPR007867|IPR012132|IPR023753	FAD/NAD(P)-binding domain|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal	GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.50.50.60|PF00732|PF05199|PIRSF000137|PS00623|PS00624|PTHR11552|SSF51905|SSF54373
ALIDE_RS18885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|SSF53822
ALIDE_RS18890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF371
ALIDE_RS18895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851|IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter, permease|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005215|GO:0005524|GO:0006810|GO:0016020|GO:0016887	G3DSA:3.40.50.300|PF00005|PF02653|PF12399|PTHR24220|PTHR24220:SF358|SM00382|SSF52540
ALIDE_RS18900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR030660	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|High-affinity branched-chain amino acid transport ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0015658|GO:0015803|GO:0016887	G3DSA:3.40.50.300|PF00005|PIRSF039137|PS00211|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS18905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000172|IPR007867|IPR012132|IPR023753	FAD/NAD(P)-binding domain|Glucose-methanol-choline oxidoreductase|Glucose-methanol-choline oxidoreductase, C-terminal|Glucose-methanol-choline oxidoreductase, N-terminal	GO:0016491|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.50.50.60|PF00732|PF05199|PIRSF000137|PS00623|PS00624|PTHR11552|SSF51905|SSF54373
ALIDE_RS18910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS18915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR004839|IPR011991|IPR015421|IPR015424	Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170	G3DSA:1.10.10.10|G3DSA:3.40.640.10|PF00155|PF00392|PTHR11751|PTHR11751:SF386|SM00345|SSF46785|SSF53383
ALIDE_RS18920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002202|IPR004553|IPR009023|IPR009029|IPR023074|IPR023076	Hydroxymethylglutaryl-CoA reductase, bacterial-type|Hydroxymethylglutaryl-CoA reductase, class I/II|Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain|Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain|Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site|Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain	GO:0004420|GO:0015936|GO:0016616|GO:0050662|GO:0055114	G3DSA:3.30.70.420|G3DSA:3.90.770.10|PF00368|PR00071|PS00066|PS00318|PS01192|PTHR10572|PTHR10572:SF6|SSF55035|SSF56542|TIGR00532
ALIDE_RS18925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006439|IPR023198|IPR023214	HAD hydrolase, subfamily IA|HAD-like domain|Phosphoglycolate phosphatase, domain 2	GO:0008152|GO:0016787	G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|PTHR18901|PTHR18901:SF9|SSF56784|TIGR01509
ALIDE_RS18930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR013655|IPR029787	GGDEF domain|Nucleotide cyclase|PAS domain|PAS fold-3	GO:0005515	G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00990|PF08447|PTHR10799|PTHR10799:SF750|SM00267|SSF55073|SSF55785|TIGR00229|TIGR00254
ALIDE_RS18935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000914|IPR030678	Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain	GO:0043190|GO:0055085	G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|PTHR30290|PTHR30290:SF14|SSF53850
ALIDE_RS18940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016181	Acyl-CoA N-acyltransferase		G3DSA:3.40.630.30|SSF55729
ALIDE_RS18945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001633|IPR011623|IPR029787	7TM-DISM receptor, extracellular domain, type 1|EAL domain|GGDEF domain|Nucleotide cyclase|PAS domain		G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00990|PF07695|PTHR33121|PTHR33121:SF10|SM00052|SM00267|SSF141868|SSF55073|SSF55785|TIGR00254
ALIDE_RS18950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023006|IPR032710	NTF2-like domain|Uncharacterised protein family UPF0225		G3DSA:3.10.450.50|MF_00612|SSF54427
ALIDE_RS18955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025245	Protein of unknown function DUF4197		PF13852
ALIDE_RS18960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007353|IPR023090	Protein of unknown function DUF421|Uncharacterised domain UPF0702, alpha/beta domain		G3DSA:3.30.240.20|PF04239|PTHR34582|PTHR34582:SF6
ALIDE_RS18965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR029016	GAF domain-like|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF09339|PTHR30136|SSF46785|SSF55781
ALIDE_RS18970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005320|IPR029062	Class I glutamine amidotransferase-like|Peptidase S51	GO:0006508|GO:0008236	G3DSA:3.40.50.880|PF03575|PTHR20842|SSF52317
ALIDE_RS18975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009561	Protein of unknown function DUF1177		PF06675
ALIDE_RS18980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010843	Uncharacterised protein family AroM		PD037589|PF07302
ALIDE_RS18985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF30|SSF53850
ALIDE_RS18995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR020846	Major facilitator superfamily domain		G3DSA:1.20.1250.20|SSF103473
ALIDE_RS19000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00073|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS19005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF00106|PR00081|PTHR24322|PTHR24322:SF57|SSF51735
ALIDE_RS19010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020610|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00099|PTHR18919|PTHR18919:SF110|SSF53901|TIGR01930
ALIDE_RS19015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010452	Isocitrate dehydrogenase kinasephosphatase	GO:0005737|GO:0006006|GO:0008772|GO:0016791	MF_00747|PD043552|PF06315|PIRSF000719|PTHR39559
ALIDE_RS19020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001765|IPR015892	Carbonic anhydrase|Carbonic anhydrase, prokaryotic-like, conserved site	GO:0004089|GO:0008270|GO:0015976	G3DSA:3.40.1050.10|PF00484|PS00704|PS00705|PTHR11002|PTHR11002:SF20|SM00947|SSF53056
ALIDE_RS19025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PS00073|PTHR10909|PTHR10909:SF211|SSF47203|SSF56645
ALIDE_RS19030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000551|IPR009061	MerR-type HTH domain|Putative DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.1660.10|PF13411|PTHR30204|SM00422|SSF46955
ALIDE_RS19060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR032524|IPR032781	AAA+ ATPase domain|ABC transporter Uup, C-terminal|ABC transporter, conserved site|ABC transporter-like|ABC-transporter extension domain|P-loop containing nucleoside triphosphate hydrolase	GO:0003677|GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12848|PF16326|PS00211|PTHR19211|PTHR19211:SF45|SM00382|SSF52540
ALIDE_RS19065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000673|IPR001789|IPR008248|IPR011006	CheY-like superfamily|Signal transduction response regulator, chemotaxis, CheB|Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase|Signal transduction response regulator, receiver domain	GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984	G3DSA:3.40.50.180|G3DSA:3.40.50.2300|MF_00099|PF00072|PF01339|PIRSF000876|PTHR24421|PTHR24421:SF21|SM00448|SSF52172|SSF52738
ALIDE_RS19070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005659|IPR011324	Chemoreceptor glutamine deamidase CheD|Cytotoxic necrotizing factor-like, catalytic	GO:0006935|GO:0050568	MF_01440|PF03975|PTHR35147|PTHR35147:SF2|SSF64438
ALIDE_RS19075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000780|IPR022641|IPR022642|IPR026024|IPR029063	Chemotaxis protein methyltransferase CheR|Chemotaxis receptor methyltransferase CheR, N-terminal|MCP methyltransferase, CheR-type|MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal|S-adenosyl-L-methionine-dependent methyltransferase	GO:0008757	G3DSA:1.10.155.10|G3DSA:3.40.50.150|PF01739|PF03705|PIRSF000410|PR00996|PTHR24422|PTHR24422:SF13|SM00138|SSF47757|SSF53335
ALIDE_RS19080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002545	CheW-like domain	GO:0004871|GO:0006935|GO:0007165	G3DSA:2.30.30.40|G3DSA:2.40.50.180|PF01584|PTHR22617|SM00260|SSF50341
ALIDE_RS19085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002545|IPR003594|IPR003661|IPR004105|IPR004358|IPR008207	CheW-like domain|Histidine kinase  CheA-like, homodimeric domain|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase, phosphotransfer (Hpt) domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0000160|GO:0004673|GO:0004871|GO:0005737|GO:0006935|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.560|G3DSA:1.20.120.160|G3DSA:2.30.30.40|G3DSA:2.40.50.180|G3DSA:3.30.565.10|PF01584|PF01627|PF02518|PF02895|PR00344|PTHR22617|PTHR22617:SF20|SM00073|SM00260|SM00387|SM01231|SSF47226|SSF47384|SSF50341|SSF55874
ALIDE_RS19090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR011006	CheY-like superfamily|Signal transduction response regulator, receiver domain	GO:0000160	G3DSA:3.40.50.2300|PF00072|PTHR26402|SM00448|SSF52172
ALIDE_RS19100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR003594|IPR011006|IPR011712	CheY-like superfamily|Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain|Signal transduction response regulator, receiver domain	GO:0000155|GO:0000160|GO:0016021|GO:0046983	G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF02518|PF07730|PTHR24421|PTHR24421:SF1|SM00387|SM00448|SSF52172|SSF55874
ALIDE_RS19105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000792|IPR001789|IPR011006|IPR011991|IPR016032	CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PTHR26402|PTHR26402:SF151|SM00421|SM00448|SSF46894|SSF52172
ALIDE_RS19110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002010|IPR006303	Flagellar biosynthesis protein FliR|Type III secretion system inner membrane R protein	GO:0006605|GO:0016020|GO:0016021|GO:0044780	PF01311|PR00953|PTHR30065|PTHR30065:SF1|TIGR01400
ALIDE_RS19115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002191|IPR006305	Bacterial export protein family 3|Flagellar biosynthesis protein FliQ	GO:0009306|GO:0016020|GO:0016021|GO:0044780	PF01313|PIRSF004669|PR00952|PTHR34040|PTHR34040:SF2|TIGR01402
ALIDE_RS19120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005837|IPR005838	Flagellar transport protein FliP|Type III secretion system inner membrane P protein	GO:0009306|GO:0016020	PF00813|PR00951|PR01302|PS01060|PS01061|PTHR30587|PTHR30587:SF0|TIGR01103
ALIDE_RS19125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022781	Flagellar biosynthesis protein, FliO	GO:0016021|GO:0044781	PF04347
ALIDE_RS19130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001172|IPR001543|IPR012826	Flagellar motor switch FliN|Flagellar motor switch FliN/Type III secretion HrcQb|Surface presentation of antigen (SpoA)	GO:0003774|GO:0006935|GO:0009288|GO:0009425|GO:0016020|GO:0071973	G3DSA:2.30.330.10|PF01052|PR00956|PTHR22617|SSF101801|TIGR02480
ALIDE_RS19135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001543|IPR001689|IPR028976	CheC-like domain|Flagellar motor switch protein FliM|Surface presentation of antigen (SpoA)	GO:0003774|GO:0009425|GO:0071973	G3DSA:2.30.330.10|PF01052|PF02154|PIRSF002888|PR00955|PTHR30034|PTHR30034:SF0|SSF101801|SSF103039|TIGR01397
ALIDE_RS19140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005503	Flagellar basal body-associated protein FliL	GO:0006935|GO:0009425|GO:0071973	PF03748|PTHR35091|PTHR35091:SF1
ALIDE_RS19145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021136	Flagellar hook-length control protein-like, C-terminal		PF02120
ALIDE_RS19150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012823	Flagellar export FliJ	GO:0009288|GO:0071973	PF02050|PTHR38786|TIGR02473
ALIDE_RS19155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000194|IPR003593|IPR004100|IPR005714|IPR020003|IPR020005|IPR027417|IPR032463	AAA+ ATPase domain|ATPase, F1 complex alpha/beta subunit, N-terminal domain|ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain|ATPase, alpha/beta subunit, nucleotide-binding domain, active site|ATPase, type III secretion system, FliI|ATPase, type III secretion system, FliI/YscN|Flagellar export ATPase FliI, clade 1|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0005737|GO:0009058|GO:0015992|GO:0016887|GO:0030254|GO:0030257|GO:0044780|GO:0046034|GO:0071973	G3DSA:3.40.50.300|PF00006|PF02874|PS00152|PTHR15184|PTHR15184:SF9|SM00382|SSF52540|TIGR01026|TIGR03496
ALIDE_RS19160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018035	Flagellar assembly protein FliH/Type III secretion system HrpE		PF02108|PTHR34982
ALIDE_RS19165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000090|IPR011002|IPR023087|IPR028263|IPR032779	Flagellar motor switch protein FliG|Flagellar motor switch protein FliG, C-terminal|Flagellar motor switch protein FliG, N-terminal domain|Flagellar motor switch protein FliG, alpha-helical|Flagellar motor switch protein FliG, middle domain	GO:0003774|GO:0006935|GO:0009288|GO:0071973	G3DSA:1.10.220.30|PF01706|PF14841|PF14842|PIRSF003161|PR00954|PTHR30534|PTHR30534:SF0|SSF48029|TIGR00207
ALIDE_RS19170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000067|IPR006182|IPR013556	Flagellar M-ring C-terminal|Flagellar M-ring protein FliF|Secretory protein YscJ/FliF	GO:0003774|GO:0009431|GO:0071973	PF01514|PF08345|PIRSF004862|PR01009|PTHR30046|PTHR30046:SF0|TIGR00206
ALIDE_RS19175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001624	Flagellar hook-basal body complex protein FliE	GO:0003774|GO:0005198|GO:0009288|GO:0071973	MF_00724|PF02049|PR01006|PTHR34653|TIGR00205
ALIDE_RS19180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008622	Flagellar protein FliT		G3DSA:1.20.58.380|PF05400
ALIDE_RS19185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003713	Flagellar protein FliS	GO:0044780	G3DSA:1.20.120.340|PF02561|PIRSF039090|PTHR34773|SSF101116|TIGR00208
ALIDE_RS19190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003481|IPR010809|IPR010810	Flagellar hook-associated 2, C-terminal|Flagellar hook-associated protein 2, N-terminal|Flagellin hook, IN motif	GO:0006928|GO:0007155|GO:0009288|GO:0009424|GO:0044781	PF02465|PF07195|PF07196|PTHR30288|PTHR30288:SF0
ALIDE_RS19195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001029|IPR001492|IPR010810	Flagellin|Flagellin hook, IN motif|Flagellin, D0/D1 domain	GO:0005198|GO:0006928|GO:0009288|GO:0009420|GO:0044781|GO:0071973	G3DSA:1.20.1330.10|PF00669|PF00700|PF07196|PR00207|PTHR30244|PTHR30244:SF1|SSF64518
ALIDE_RS19200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001029|IPR001492|IPR010810	Flagellin|Flagellin hook, IN motif|Flagellin, D0/D1 domain	GO:0005198|GO:0006928|GO:0009288|GO:0009420|GO:0044781|GO:0071973	G3DSA:1.20.1330.10|PF00669|PF00700|PF07196|PR00207|PTHR30244|PTHR30244:SF1|SSF64518
ALIDE_RS19205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001173|IPR007833|IPR029044|IPR032719	Capsule polysaccharide biosynthesis|Glycosyltransferase 2-like|Glycosyltransferase WbsX|Nucleotide-diphospho-sugar transferases	GO:0000271|GO:0015774	G3DSA:3.90.550.10|PF00535|PF05159|PF14307|PTHR41244|PTHR41244:SF1|SSF53448|SSF53756
ALIDE_RS19210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000540|IPR002898|IPR022522	Flagellar motor protein MotA, conserved site|Flagellar motor stator, MotA|MotA/TolQ/ExbB proton channel	GO:0006810|GO:0008565|GO:0016020	PF01618|PS01307|PTHR30433|PTHR30433:SF4|TIGR03818
ALIDE_RS19215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006665|IPR025713	Motility protein B, N-terminal domain|OmpA-like domain		G3DSA:3.30.1330.60|PF00691|PF13677|PTHR30329|PTHR30329:SF2|SSF103088
ALIDE_RS19220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR011006	CheY-like superfamily|Signal transduction response regulator, receiver domain	GO:0000160	G3DSA:3.40.50.2300|PF00072|PTHR26402|SM00448|SSF52172
ALIDE_RS19225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007439	Chemotaxis phosphatase, CheZ	GO:0003824|GO:0009288|GO:0050920	G3DSA:1.10.287.500|PF04344|PIRSF002884|PTHR22617|PTHR22617:SF32|SSF75708
ALIDE_RS19230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006135|IPR029025	Type III secretion system substrate exporter|Type III secretion system substrate exporter, C-terminal	GO:0009306|GO:0016020	G3DSA:3.40.1690.10|PF01312|PR00950|PTHR30531|SSF160544
ALIDE_RS19235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001712|IPR006301	Flagellar biosynthesis protein FlhA|Type III secretion system FHIPEP	GO:0009306|GO:0016020|GO:0016021|GO:0044780	PF00771|PIRSF005419|PR00949|PTHR30161|PTHR30161:SF1|TIGR01398
ALIDE_RS19240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000897|IPR003593|IPR020006|IPR027417	AAA+ ATPase domain|Flagellar biosynthesis protein FlhF|P-loop containing nucleoside triphosphate hydrolase|Signal recognition particle, SRP54 subunit, GTPase domain	GO:0003924|GO:0005525|GO:0006614|GO:0044781	G3DSA:1.20.120.140|G3DSA:3.40.50.300|PF00448|PTHR11564|PTHR11564:SF3|SM00382|SM00962|SSF52540|TIGR03499
ALIDE_RS19250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000943|IPR007624|IPR007627|IPR007630|IPR011991|IPR012845|IPR013324|IPR013325|IPR014284|IPR016263|IPR028617	RNA polymerase sigma factor FliA|RNA polymerase sigma factor, FliA/WhiG|RNA polymerase sigma factor, region 2|RNA polymerase sigma factor, region 3/4|RNA polymerase sigma-70|RNA polymerase sigma-70 like domain|RNA polymerase sigma-70 region 2|RNA polymerase sigma-70 region 3|RNA polymerase sigma-70 region 4|RNA polymerase sporulation-specific sigma factor|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0003899|GO:0006351|GO:0006352|GO:0006355|GO:0016987|GO:0030435	G3DSA:1.10.10.10|G3DSA:1.10.601.10|MF_00962|PF04539|PF04542|PF04545|PIRSF000770|PR00046|PS00716|PTHR30385|PTHR30385:SF7|SSF88659|SSF88946|TIGR02479|TIGR02937
ALIDE_RS19260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007412|IPR031316	Anti-sigma-28 factor FlgM, C-terminal|Anti-sigma-28 factor, FlgM	GO:0045892	PF04316|SSF101498|TIGR03824
ALIDE_RS19265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013974|IPR017585	Flagella basal body P-ring formation protein FlgA, C-terminal|SAF domain		PF13144|PTHR36307|SM00858|TIGR03170
ALIDE_RS19270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001444|IPR006300|IPR019776	Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod protein FlgB	GO:0030694|GO:0071973	PF00460|PIRSF002889|PS00588|PTHR30435|PTHR30435:SF12|TIGR01396
ALIDE_RS19275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001444|IPR006299|IPR010930	Flagellar basal body rod protein, N-terminal|Flagellar basal-body rod protein FlgC|Flagellar basal-body/hook protein, C-terminal domain	GO:0030694|GO:0071973	PF00460|PF06429|PTHR30435|PTHR30435:SF2|TIGR01395
ALIDE_RS19280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005648|IPR025963|IPR025965	Flagellar hook capping protein|FlgD Ig-like domain|FlgD Tudor-like domain		PF03963|PF13860|PF13861|PTHR30435|PTHR30435:SF15
ALIDE_RS19285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001444|IPR010930|IPR011491|IPR020013	Fagellar hook-basal body protein, FlgE/F/G|Flagellar basal body rod protein, N-terminal|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook protein FlgE	GO:0071973	PF00460|PF06429|PF07559|PTHR30435|PTHR30435:SF1|SSF117143|TIGR03506
ALIDE_RS19290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001444|IPR010930|IPR012836|IPR019776|IPR020013	Fagellar hook-basal body protein, FlgE/F/G|Flagellar basal body rod protein, N-terminal|Flagellar basal body rod protein, conserved site|Flagellar basal-body rod FlgF|Flagellar basal-body/hook protein, C-terminal domain	GO:0030694|GO:0071973	PF00460|PF06429|PS00588|PTHR30435|PTHR30435:SF18|SSF117143|TIGR02490|TIGR03506
ALIDE_RS19295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001444|IPR010930|IPR012834|IPR020013	Fagellar hook-basal body protein, FlgE/F/G|Flagellar basal body rod protein, N-terminal|Flagellar basal-body rod FlgG|Flagellar basal-body/hook protein, C-terminal domain	GO:0009426|GO:0071973	PF00460|PF06429|PTHR30435|PTHR30435:SF19|SSF117143|TIGR02488|TIGR03506
ALIDE_RS19300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000527	Flagellar L-ring protein	GO:0003774|GO:0009427|GO:0071973	MF_00415|PF02107|PR01008|PTHR34933
ALIDE_RS19305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001782	Flagellar P-ring protein	GO:0005198|GO:0009428|GO:0030288|GO:0071973	MF_00416|PF02119|PR01010|PTHR30381|PTHR30381:SF1
ALIDE_RS19310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002901|IPR013377|IPR019301	Flagellar protein FlgJ, N-terminal|Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain|Peptidoglycan hydrolase FlgJ	GO:0004040|GO:0016798|GO:0044780	G3DSA:1.10.530.10|PF01832|PF10135|PR01002|PTHR33308|PTHR33308:SF3|SM00047|TIGR02541
ALIDE_RS19315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001444|IPR002371|IPR010930	Flagellar basal body rod protein, N-terminal|Flagellar basal-body/hook protein, C-terminal domain|Flagellar hook-associated protein 1	GO:0005198|GO:0009424|GO:0044780|GO:0071973	PF00460|PF06429|PR01005|PTHR30033|PTHR30033:SF1|SSF64518|TIGR02492
ALIDE_RS19320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001029|IPR013384	Flagellar hook-associated protein 3|Flagellin, D0/D1 domain	GO:0005198|GO:0009424|GO:0071973	G3DSA:1.20.1330.10|PF00669|PTHR30244|PTHR30244:SF5|SSF64518|TIGR02550
ALIDE_RS19325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013976	Metal-dependent hydrolase HDOD		G3DSA:1.10.3150.10|PF08668|PTHR33525|PTHR33525:SF4|SSF109604
ALIDE_RS19330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004136|IPR013785	Aldolase-type TIM barrel|Nitronate monooxygenase	GO:0003824|GO:0018580|GO:0055114	G3DSA:3.20.20.70|PF03060|PTHR32332|SSF51412
ALIDE_RS19335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR004839|IPR011991|IPR015421|IPR015424	Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0003824|GO:0006355|GO:0009058|GO:0030170	G3DSA:1.10.10.10|G3DSA:3.40.640.10|PF00155|PF00392|PTHR11751|PTHR11751:SF386|SM00345|SSF46785|SSF53383
ALIDE_RS19340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001123	Lysine-type exporter protein (LYSE/YGGA)	GO:0006865|GO:0016020	PF01810|PTHR30086|PTHR30086:SF12
ALIDE_RS19345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR12715|PTHR12715:SF9|SSF103481
ALIDE_RS19350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004839|IPR015421|IPR015422|IPR015424	Aminotransferase, class I/classII|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0009058|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00155|PTHR11751|PTHR11751:SF294|SSF53383
ALIDE_RS19355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003719	Phenazine biosynthesis PhzF protein	GO:0003824|GO:0009058	G3DSA:3.10.310.10|PF02567|PIRSF016184|PTHR13774|PTHR13774:SF18|SSF54506|TIGR00654
ALIDE_RS19360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000634|IPR001926	Serine/threonine dehydratase, pyridoxal-phosphate-binding site|Tryptophan synthase beta subunit-like PLP-dependent enzyme	GO:0006520|GO:0030170	G3DSA:3.40.50.1100|PF00291|PS00165|PTHR10314|PTHR10314:SF17|SSF53686
ALIDE_RS19365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007325	Kynurenine formamidase	GO:0004061|GO:0019441	G3DSA:3.50.30.50|PF04199|PTHR34861|PTHR34861:SF5|SSF102198
ALIDE_RS19370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|PTHR30483:SF17|SSF53822
ALIDE_RS19375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001509|IPR016040	NAD(P)-binding domain|NAD-dependent epimerase/dehydratase, N-terminal domain	GO:0003824|GO:0050662	G3DSA:3.40.50.720|PF01370|PTHR32487|PTHR32487:SF0|SSF51735
ALIDE_RS19380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013078|IPR029033	Histidine phosphatase superfamily|Histidine phosphatase superfamily, clade-1		G3DSA:3.40.50.1240|PF00300|PTHR20935|PTHR20935:SF1|SM00855|SSF53254
ALIDE_RS19385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR029787	GGDEF domain|Nucleotide cyclase		G3DSA:3.30.70.270|PF00990|PTHR10799|PTHR10799:SF750|SM00267|SSF55073|TIGR00254
ALIDE_RS19390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012533	GLE1, N-terminal, bacteria		PF07987
ALIDE_RS19395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR012910	TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain	GO:0004872|GO:0006810|GO:0016020	G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PTHR32552|PTHR32552:SF0|SSF56935
ALIDE_RS19405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003785|IPR024087	Creatininase-like domain|Creatininase/formamide hydrolase		G3DSA:3.40.50.10310|PF02633|PTHR35005|PTHR35005:SF1|SSF102215
ALIDE_RS19410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064|IPR019546	Bordetella uptake gene|Twin-arginine translocation pathway, signal sequence, bacterial/archaeal	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850|TIGR01409
ALIDE_RS19415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003834|IPR012336|IPR017937|IPR028250	Cytochrome C biogenesis protein, transmembrane domain|Thiol:disulfide interchange protein DsbD, N-terminal domain|Thioredoxin, conserved site|Thioredoxin-like fold	GO:0016020|GO:0017004|GO:0045454|GO:0055114	G3DSA:3.40.30.10|PF02683|PF11412|PF13899|PS00194|PTHR32234|PTHR32234:SF3|SSF52833
ALIDE_RS19425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002781	Transmembrane protein TauE-like	GO:0016021	PF01925|PTHR30269
ALIDE_RS19430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002477|IPR005490	L,D-transpeptidase catalytic domain|Peptidoglycan binding-like	GO:0016740	G3DSA:1.10.101.10|G3DSA:2.40.440.10|PF01471|PF03734|SSF141523|SSF47090
ALIDE_RS19435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000257|IPR006361	Uroporphyrinogen decarboxylase (URO-D)|Uroporphyrinogen decarboxylase HemE	GO:0004853|GO:0006779	G3DSA:3.20.20.210|MF_00218|PF01208|PS00906|PS00907|PTHR21091|PTHR21091:SF2|SSF51726|TIGR01464
ALIDE_RS19440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001650|IPR005259|IPR011545|IPR014001|IPR027417	DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase|Primosomal protein N'	GO:0003676|GO:0003677|GO:0004003|GO:0005524|GO:0006260|GO:0032508	G3DSA:3.40.50.300|MF_00983|PF00270|PF00271|PTHR30580|SM00487|SM00490|SSF52540|TIGR00595
ALIDE_RS19445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020610|IPR020615|IPR020616|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase, N-terminal|Thiolase, active site|Thiolase, acyl-enzyme intermediate active site|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PF02803|PIRSF000429|PS00098|PS00099|PTHR18919|PTHR18919:SF95|SSF53901|TIGR01930
ALIDE_RS19450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR014748|IPR018376|IPR029045	ClpP/crotonase-like domain|Crontonase, C-terminal|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152	G3DSA:1.10.12.10|G3DSA:3.90.226.10|PF00378|PS00166|PTHR11941|SSF52096
ALIDE_RS19455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845	AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PS00455|PTHR24096|PTHR24096:SF151|SSF56801
ALIDE_RS19460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002559|IPR008490	Transposase InsH, N-terminal|Transposase, IS4-like	GO:0003677|GO:0004803|GO:0006313	PF01609|PF05598
ALIDE_RS19465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873	AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:3.40.50.980|PF00501|PTHR24096|PTHR24096:SF151|SSF56801
ALIDE_RS19470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF458|SM00382|SSF52540
ALIDE_RS19475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|SSF53822
ALIDE_RS19480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482|PTHR30482:SF5
ALIDE_RS19485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF398
ALIDE_RS19490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PTHR24220|PTHR24220:SF519|SM00382|SSF52540
ALIDE_RS19495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR011075|IPR015893|IPR023772	DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal|Tetracycline transcriptional regulator, TetR-related, C-terminal	GO:0003677	G3DSA:1.10.10.60|G3DSA:1.10.357.10|PF00440|PR00455|PS01081|PTHR30055|SSF46689|SSF48498
ALIDE_RS19500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004776	Auxin efflux carrier	GO:0016021|GO:0055085	PF03547|PTHR36838|PTHR36838:SF1
ALIDE_RS19505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000212|IPR005752|IPR013986|IPR014016|IPR014017|IPR027417	ATP-dependent DNA helicase Rep|DExx box DNA helicase domain|DNA helicase, UvrD/REP type|P-loop containing nucleoside triphosphate hydrolase|UvrD-like DNA helicase, C-terminal|UvrD-like Helicase, ATP-binding domain	GO:0003677|GO:0004003|GO:0005524|GO:0006268|GO:0016787	G3DSA:1.10.10.160|G3DSA:1.10.486.10|G3DSA:3.40.50.300|MF_01920|PF00580|PF13361|PTHR11070|PTHR11070:SF19|SSF52540
ALIDE_RS19515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003187	Phospholipase A1	GO:0004620|GO:0006629|GO:0016020	G3DSA:2.40.230.10|PF02253|PR01486|PTHR40457|SSF56931
ALIDE_RS19520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005532|IPR016187	C-type lectin fold|Sulfatase-modifying factor enzyme		G3DSA:3.90.1580.10|PF03781|PTHR23150|SSF56436
ALIDE_RS19525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000917|IPR017849|IPR017850|IPR024607	Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|Sulfatase, N-terminal|Sulfatase, conserved site	GO:0003824|GO:0008152|GO:0008484	G3DSA:3.30.1120.10|G3DSA:3.40.720.10|PF00884|PS00149|PTHR10342|PTHR10342:SF198|SSF53649
ALIDE_RS19530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004360|IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain		G3DSA:3.10.180.10|PF00903|SSF54593
ALIDE_RS19535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002938|IPR023753	FAD-binding domain|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114|GO:0071949	G3DSA:3.50.50.60|PF01494|PR00420|PTHR13789|PTHR13789:SF226|SSF51905
ALIDE_RS19540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011234	Fumarylacetoacetase, C-terminal-related	GO:0003824|GO:0008152	G3DSA:3.90.850.10|PF01557|PTHR11820|PTHR11820:SF6|SSF56529
ALIDE_RS19545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002299|IPR023614	Porin domain|Porin, Neisseria sp. type	GO:0006810|GO:0015288|GO:0016020	G3DSA:2.40.160.10|PF13609|PR00184|SSF56935
ALIDE_RS19550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PTHR11751|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS19560	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006015|IPR006016|IPR014729	Rossmann-like alpha/beta/alpha sandwich fold|Universal stress protein A|UspA	GO:0006950	G3DSA:3.40.50.620|PF00582|PR01438|PTHR31964|SSF52402
ALIDE_RS19565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002616|IPR004803	Queuine tRNA-ribosyltransferase|tRNA-guanine(15) transglycosylase-like	GO:0006400|GO:0008033|GO:0008479|GO:0008616	G3DSA:3.20.20.105|MF_00168|PF01702|PTHR21148|PTHR21148:SF26|SSF51713|TIGR00430|TIGR00449
ALIDE_RS19575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR001610|IPR013767	PAC motif|PAS domain|PAS fold	GO:0006355	G3DSA:3.30.450.20|PF00989|SM00086|SM00091|SSF55785|TIGR00229
ALIDE_RS19580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006115|IPR008927|IPR013328|IPR016040	6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, NADP-binding|6-phosphogluconate dehydrogenase, domain 2|NAD(P)-binding domain	GO:0004616|GO:0016491|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF03446|PTHR22981|PTHR22981:SF63|SSF48179|SSF51735
ALIDE_RS19585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS19590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS19595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005493	Ribonuclease E inhibitor RraA/RraA-like protein		G3DSA:3.50.30.40|PF03737|PTHR33254|PTHR33254:SF5|SSF89562
ALIDE_RS19600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|PTHR11751|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS19605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002123|IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain|Phospholipid/glycerol acyltransferase	GO:0008152|GO:0016021|GO:0016746|GO:0055085	G3DSA:1.20.1250.20|G3DSA:3.40.1130.10|PF01553|PF07690|PTHR10434|PTHR10434:SF15|SM00563|SSF103473|SSF69593
ALIDE_RS19610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000642|IPR003593|IPR003959|IPR003960|IPR005936|IPR011546|IPR027417	AAA+ ATPase domain|ATPase, AAA-type, conserved site|ATPase, AAA-type, core|P-loop containing nucleoside triphosphate hydrolase|Peptidase M41|Peptidase M41, FtsH extracellular|Peptidase, FtsH	GO:0004222|GO:0005524|GO:0006508|GO:0008270|GO:0016020|GO:0016021	G3DSA:1.10.8.60|G3DSA:3.40.50.300|MF_01458|PF00004|PF01434|PF06480|PS00674|PTHR23076|PTHR23076:SF10|SM00382|SSF140990|SSF52540|TIGR01241
ALIDE_RS19615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000836|IPR029057	Phosphoribosyltransferase domain|Phosphoribosyltransferase-like	GO:0009116	G3DSA:3.40.50.2020|PF00156|PTHR11608|SSF53271
ALIDE_RS19620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000836|IPR029057	Phosphoribosyltransferase domain|Phosphoribosyltransferase-like	GO:0009116	G3DSA:3.40.50.2020|PF00156|PTHR31299|SSF53271
ALIDE_RS19625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029058	Alpha/Beta hydrolase fold		G3DSA:3.40.50.1820|SSF53474
ALIDE_RS19630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR011032|IPR013154|IPR014187|IPR016040	Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, N-terminal|Alcohol dehydrogenase, zinc-binding type 2|GroES-like|NAD(P)-binding domain	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF08240|PTHR11695|PTHR11695:SF403|SSF50129|SSF51735|TIGR02822
ALIDE_RS19635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS19640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023753|IPR025700	FAD/NAD(P)-binding domain|L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF13434|PR00368|PR00411|PTHR23023|PTHR23023:SF119|SSF51905
ALIDE_RS19645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003779|IPR004675|IPR010195|IPR029032	AhpD-like|Alkylhydroperoxidase AhpD core|Carboxymuconolactone decarboxylase-like|Uncharacterised peroxidase-related	GO:0051920|GO:0055114	G3DSA:1.20.1290.10|PF02627|PTHR35446|PTHR35446:SF2|SSF69118|TIGR00778|TIGR01926
ALIDE_RS19650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013702|IPR019494	FIST domain, N-terminal|FIST, C-domain		PF08495|PF10442|SM00897|SM01204
ALIDE_RS19660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000119|IPR010992	Histone-like DNA-binding protein|Integration host factor (IHF)-like DNA-binding domain	GO:0003677	G3DSA:4.10.520.10|PF00216|PTHR33175|PTHR33175:SF1|SM00411|SSF47729
ALIDE_RS19665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016130|IPR026893|IPR029021	Protein-tyrosine phosphatase, active site|Protein-tyrosine phosphatase-like|Tyrosine/serine-protein phosphatase IphP-type	GO:0004725|GO:0016311|GO:0016791	G3DSA:3.90.190.10|PF13350|PS00383|PTHR31126|PTHR31126:SF21|SSF52799
ALIDE_RS19675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000456	Ribosomal protein L17	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:3.90.1030.10|MF_01368|PF01196|PS01167|PTHR14413|SSF64263|TIGR00059
ALIDE_RS19680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009025|IPR011260|IPR011262|IPR011263|IPR011773	DNA-directed RNA polymerase, RBP11-like dimerisation domain|DNA-directed RNA polymerase, RpoA/D/Rpb3-type|DNA-directed RNA polymerase, alpha subunit|DNA-directed RNA polymerase, insert domain|RNA polymerase, alpha subunit, C-terminal	GO:0003677|GO:0003899|GO:0006351|GO:0046983	G3DSA:1.10.150.20|G3DSA:2.170.120.12|G3DSA:3.30.1360.10|MF_00059|PD001179|PF01000|PF01193|PF03118|PTHR32108|PTHR32108:SF0|SM00662|SSF47789|SSF55257|SSF56553|TIGR02027
ALIDE_RS19685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001912|IPR002942|IPR005709|IPR018079|IPR022801	RNA-binding S4 domain|Ribosomal protein S4, bacterial-type|Ribosomal protein S4, conserved site|Ribosomal protein S4/S9|Ribosomal protein S4/S9, N-terminal	GO:0003723|GO:0003735|GO:0005622|GO:0006412|GO:0015935|GO:0019843	G3DSA:1.10.1050.10|G3DSA:3.10.290.10|MF_01306_B|PF00163|PF01479|PS00632|PTHR11831|PTHR11831:SF4|SM00363|SM01390|SSF55174|TIGR01017
ALIDE_RS19690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001971|IPR018102|IPR019981	Ribosomal S11, conserved site|Ribosomal protein S11|Ribosomal protein S11, bacterial-type	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:3.30.420.80|MF_01310|PF00411|PIRSF002131|PS00054|PTHR11759|SSF53137|TIGR03632
ALIDE_RS19695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001892|IPR010979|IPR018269|IPR019980|IPR027437	30s ribosomal protein S13, C-terminal|Ribosomal protein S13|Ribosomal protein S13, bacterial-type|Ribosomal protein S13, conserved site|Ribosomal protein S13-like, H2TH	GO:0003676|GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:1.10.8.50|G3DSA:4.10.910.10|MF_01315|PF00416|PIRSF002134|PS00646|PTHR10871|SSF46946|TIGR03631
ALIDE_RS19700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000473	Ribosomal protein L36	GO:0003735|GO:0005622|GO:0005840|GO:0006412	MF_00251|PD002101|PF00444|PS00828|PTHR18804|SSF57840|TIGR01022
ALIDE_RS19705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002208|IPR023201|IPR026593|IPR030659	Protein translocase subunit SecY|SecY conserved site|SecY subunit domain|SecY/SEC61-alpha family	GO:0015031|GO:0016020	G3DSA:1.10.3370.10|MF_01465|PF00344|PIRSF004557|PR00303|PS00755|PS00756|PTHR10906|PTHR10906:SF2|SSF103491|TIGR00967
ALIDE_RS19710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005749|IPR021131|IPR030878	Ribosomal protein L15|Ribosomal protein L15, bacterial-type|Ribosomal protein L18e/L15P	GO:0003735|GO:0006412|GO:0015934	G3DSA:3.100.10.10|MF_01341|PF00828|PTHR12934|SSF52080|TIGR01071
ALIDE_RS19715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005996|IPR016082	Ribosomal protein L30, bacterial-type|Ribosomal protein L30, ferredoxin-like fold domain	GO:0003735|GO:0006412|GO:0015934	G3DSA:3.30.1390.20|MF_01371_B|PF00327|PIRSF002211|PTHR15892|SSF55129|TIGR01308
ALIDE_RS19720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000851|IPR005324|IPR005712|IPR013810|IPR014720|IPR014721|IPR018192|IPR020568	Double-stranded RNA-binding domain|Ribosomal protein S5|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup|Ribosomal protein S5, C-terminal|Ribosomal protein S5, N-terminal|Ribosomal protein S5, N-terminal, conserved site|Ribosomal protein S5, bacterial-type	GO:0003723|GO:0003735|GO:0005840|GO:0006412|GO:0015935	G3DSA:3.30.160.20|G3DSA:3.30.230.10|MF_01307_B|PF00333|PF03719|PS00585|PTHR13718|SSF54211|SSF54768|TIGR01021
ALIDE_RS19725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004389|IPR005484	Ribosomal protein L18|Ribosomal protein L18, bacterial-type	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:3.30.420.100|MF_01337_B|PF00861|PTHR12899|SSF53137|TIGR00060
ALIDE_RS19730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000702|IPR002358|IPR019906|IPR020040	Ribosomal protein L6|Ribosomal protein L6, alpha-beta domain|Ribosomal protein L6, bacterial-type|Ribosomal protein L6, conserved site	GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843	G3DSA:3.90.930.12|MF_01365_B|PF00347|PIRSF002162|PR00059|PS00525|PTHR11655|PTHR11655:SF14|SSF56053|TIGR03654
ALIDE_RS19735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000630	Ribosomal protein S8	GO:0003735|GO:0005840|GO:0006412	G3DSA:3.30.1370.30|G3DSA:3.30.1490.10|MF_01302_B|PF00410|PS00053|PTHR11758|SSF56047
ALIDE_RS19740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001209|IPR023036	Ribosomal protein S14|Ribosomal protein S14, bacterial/plastid	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:4.10.830.10|MF_00537|PF00253|PTHR19836|SSF57716
ALIDE_RS19745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002132|IPR020929|IPR020930|IPR022803|IPR031309|IPR031310	Ribosomal protein L5|Ribosomal protein L5 domain|Ribosomal protein L5, C-terminal|Ribosomal protein L5, N-terminal|Ribosomal protein L5, bacterial-type|Ribosomal protein L5, conserved site	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:3.30.1440.10|MF_01333_B|PF00281|PF00673|PIRSF002161|PS00358|PTHR11994|SSF55282
ALIDE_RS19750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003256|IPR005824|IPR005825|IPR008991|IPR014722	KOW|Ribosomal protein L2 domain 2|Ribosomal protein L24|Ribosomal protein L24/L26, conserved site|Translation protein SH3-like domain	GO:0003735|GO:0005622|GO:0005840|GO:0006412	G3DSA:2.30.30.30|MF_01326_B|PF00467|PF17136|PS01108|PTHR12903|SM00739|SSF50104|TIGR01079
ALIDE_RS19755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000218|IPR005745|IPR019972	Ribosomal protein L14P|Ribosomal protein L14P,  conserved site|Ribosomal protein L14P, bacterial-type	GO:0003735|GO:0005840|GO:0006412|GO:0015934	G3DSA:2.40.150.20|MF_01367|PF00238|PS00049|PTHR11761|PTHR11761:SF3|SM01374|SSF50193|TIGR01067
ALIDE_RS19760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000447|IPR006076|IPR023753|IPR031656	Alpha-glycerophosphate oxidase, C-terminal|FAD dependent oxidoreductase|FAD-dependent glycerol-3-phosphate dehydrogenase|FAD/NAD(P)-binding domain	GO:0004368|GO:0006072|GO:0009331|GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF01266|PF16901|PR01001|PS00978|PTHR11985|SSF51905
ALIDE_RS19765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001034|IPR011991|IPR012318|IPR014036|IPR018356	Crp-type HTH domain|DeoR C-terminal sensor domain|DeoR-type HTH domain|Transcription regulator, HTH DeoR-type, conserved site|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0005622|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.750.70|PF00455|PF08220|PR00037|PS00894|PTHR30363|PTHR30363:SF1|SM00419|SM00420|SM01134|SSF100950|SSF46785
ALIDE_RS19770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000577|IPR005999|IPR018483|IPR018484|IPR018485	Carbohydrate kinase, FGGY|Carbohydrate kinase, FGGY, C-terminal|Carbohydrate kinase, FGGY, N-terminal|Carbohydrate kinase, FGGY, conserved site|Glycerol kinase	GO:0004370|GO:0005975|GO:0006072|GO:0016773	G3DSA:3.30.420.40|MF_00186|PF00370|PF02782|PIRSF000538|PS00445|PS00933|PTHR10196|PTHR10196:SF44|SSF53067|TIGR01311
ALIDE_RS19775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000304|IPR008927|IPR016040|IPR028939|IPR029036	6-phosphogluconate dehydrogenase C-terminal domain-like|NAD(P)-binding domain|Pyrroline-5-carboxylate reductase|Pyrroline-5-carboxylate reductase, catalytic, N-terminal|Pyrroline-5-carboxylate reductase, dimerisation domain	GO:0004735|GO:0006561|GO:0055114	G3DSA:1.10.3730.10|G3DSA:3.40.50.720|MF_01925|PF03807|PF14748|PIRSF000193|PS00521|PTHR11645|PTHR11645:SF0|SSF48179|SSF51735|TIGR00112
ALIDE_RS19780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003961|IPR013783|IPR014867	Fibronectin type III|Immunoglobulin-like fold|Spore coat protein CotH	GO:0005515	G3DSA:2.60.40.10|PF08757|SSF49265
ALIDE_RS19785	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000537|IPR006370|IPR030470|IPR031103	4-hydroxybenzoate octaprenyltransferase|4-hydroxybenzoate polyprenyltransferase|UbiA prenyltransferase conserved site|UbiA prenyltransferase family	GO:0004659|GO:0006744|GO:0016021	MF_01635|PF01040|PS00943|PTHR11048|PTHR11048:SF7|TIGR01474
ALIDE_RS19790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002177|IPR008331|IPR009078|IPR012347|IPR023188	DNA-binding protein Dps|DNA-binding protein Dps, conserved site|Ferritin-like superfamily|Ferritin-related|Ferritin/DPS protein domain	GO:0006879|GO:0006950|GO:0008199|GO:0016722|GO:0055114	G3DSA:1.20.1260.10|PF00210|PIRSF005900|PR01346|PS00819|PTHR30295|PTHR30295:SF6|SSF47240
ALIDE_RS19795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|PTHR30346:SF15|SSF46785|SSF53850
ALIDE_RS19800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001650|IPR004609|IPR011545|IPR012340|IPR014001|IPR027417|IPR033454	ATP-dependent DNA helicase RecG|DEAD/DEAH box helicase domain|Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|Nucleic acid-binding, OB-fold|P-loop containing nucleoside triphosphate hydrolase|RecG, wedge domain	GO:0003676|GO:0004003|GO:0005524|GO:0006281|GO:0006310	G3DSA:2.40.50.140|G3DSA:3.40.50.300|PF00270|PF00271|PF17191|PTHR24031|PTHR24031:SF249|SM00487|SM00490|SSF50249|SSF52540|TIGR00643
ALIDE_RS19805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003607|IPR006674|IPR006675|IPR021812	HD domain|HD/PDEase domain|HDIG domain|Protein of unknown function DUF3391		G3DSA:1.10.3210.10|PF01966|PF11871|SM00471|SSF109604|TIGR00277
ALIDE_RS19810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003699	S-adenosylmethionine:tRNA ribosyltransferase-isomerase,  QueA	GO:0008616|GO:0016740|GO:0016853	G3DSA:2.40.10.240|G3DSA:3.40.1780.10|MF_00113|PF02547|PTHR30307|PTHR30307:SF0|SSF111337|TIGR00113
ALIDE_RS19815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR22911|PTHR22911:SF70|SSF103481
ALIDE_RS19820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000101|IPR029055	Gamma-glutamyltranspeptidase|Nucleophile aminohydrolases, N-terminal	GO:0003840|GO:0006749	PF01019|PR01210|PTHR11686|PTHR11686:SF8|SSF56235
ALIDE_RS19825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS19830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30419|PTHR30419:SF3|SSF46785|SSF53850
ALIDE_RS19835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002043|IPR005122|IPR018085	Uracil-DNA glycosylase|Uracil-DNA glycosylase, active site|Uracil-DNA glycosylase-like	GO:0004844|GO:0006281|GO:0006284|GO:0016799	G3DSA:3.40.470.10|MF_00148|PF03167|PS00130|PTHR11264|SM00986|SM00987|SSF52141|TIGR00628
ALIDE_RS19840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001468|IPR011060|IPR013785|IPR013798	Aldolase-type TIM barrel|Indole-3-glycerol phosphate synthase|Indole-3-glycerol phosphate synthase, conserved site|Ribulose-phosphate binding barrel	GO:0003824|GO:0004425|GO:0006568|GO:0008152	G3DSA:3.20.20.70|MF_00134_B|PF00218|PS00614|PTHR22854|PTHR22854:SF2|SSF51366
ALIDE_RS19845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000312|IPR005940|IPR017459	Anthranilate phosphoribosyl transferase|Glycosyl transferase family 3, N-terminal domain|Glycosyl transferase, family 3	GO:0000162|GO:0004048|GO:0008152|GO:0016757	G3DSA:1.20.970.10|G3DSA:3.40.1030.10|MF_00211|PF00591|PF02885|PTHR11922|PTHR11922:SF5|SSF47648|SSF52418|TIGR01245
ALIDE_RS19850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006221|IPR017926|IPR029062	Anthranilate synthase/para-aminobenzoate synthase like domain|Class I glutamine amidotransferase-like|Glutamine amidotransferase	GO:0008152	G3DSA:3.40.50.880|PF00117|PR00096|PR00097|PR00099|PTHR11922|PTHR11922:SF7|SSF52317|TIGR00566
ALIDE_RS19860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010260	Prophage CP4-57 regulatory protein (AlpA)		PF05930
ALIDE_RS19865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025669|IPR027417	AAA domain|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF13614|PTHR13696|SSF52540
ALIDE_RS19875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003115|IPR022304	Integrating conjugative element, PFGI-1, ParB|ParB/Sulfiredoxin		G3DSA:3.90.1530.10|SSF110849|TIGR03764
ALIDE_RS19880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021364	Protein of unknown function DUF2857		PF11198
ALIDE_RS19890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014996	Integrating conjugative element protein, PFL4669		PF08900|TIGR03761
ALIDE_RS19895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021502	Protein of unknown function DUF3158		PF11358
ALIDE_RS19900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000424|IPR011344|IPR012340	Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding|Single-stranded DNA-binding protein	GO:0003697|GO:0006260	G3DSA:2.40.50.140|PF00436|PIRSF002070|SSF50249
ALIDE_RS19905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000380|IPR003601|IPR006171|IPR013497|IPR013824|IPR013826|IPR023405|IPR023406	DNA topoisomerase, type IA|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 1|DNA topoisomerase, type IA, central region, subdomain 3|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|Toprim domain	GO:0003677|GO:0003916|GO:0003917|GO:0006265	G3DSA:1.10.290.10|G3DSA:1.10.460.10|G3DSA:3.40.50.140|PF01131|PF01751|PR00417|PS00396|PTHR11390|SM00436|SM00493|SSF56712
ALIDE_RS19910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002611|IPR003593|IPR027417|IPR028350	AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase	GO:0005524	G3DSA:3.40.50.300|PF01695|PIRSF003073|PTHR30050|PTHR30050:SF6|SM00382|SSF52540
ALIDE_RS19915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR009057|IPR012337	Homeodomain-like|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0003677|GO:0015074	G3DSA:1.10.10.60|G3DSA:3.30.420.10|PF00665|PTHR35004|PTHR35004:SF2
ALIDE_RS19925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002052|IPR029063	DNA methylase, N-6 adenine-specific, conserved site|S-adenosyl-L-methionine-dependent methyltransferase	GO:0003676|GO:0008168|GO:0032259	G3DSA:3.40.50.150|PR00507|PS00092|SSF53335
ALIDE_RS19940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001650|IPR014001|IPR027417	Helicase superfamily 1/2, ATP-binding domain|Helicase, C-terminal|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF00271|PTHR10799|PTHR10799:SF576|SM00487|SSF52540
ALIDE_RS19945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022260	Integrating conjugative element protein PilL, PFGI-1		TIGR03748
ALIDE_RS19955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022293	Integrating conjugative element protein, PFL4693		TIGR03759
ALIDE_RS19960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008258|IPR023346	Lysozyme-like domain|Transglycosylase SLT domain 1		G3DSA:1.10.530.10|PF01464|SSF53955
ALIDE_RS19965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021300	Integrating conjugative element protein, PFL4695		PF11072|TIGR03765
ALIDE_RS19970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022458|IPR022503|IPR027417|IPR032689	Conjugative coupling factor TraG/TraD|Conjugative coupling factor TraG/TraD, PFGI-1|P-loop containing nucleoside triphosphate hydrolase|TraD/TraG, TraM recognition site		G3DSA:3.40.50.300|PF12696|SSF52540|TIGR03743|TIGR03754
ALIDE_RS19975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022266	Integrating conjugative element protein, PFL4697-type		PF14348|TIGR03747
ALIDE_RS19980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR019110	Uncharacterised protein family, RAQPRD		PF09686|TIGR01690
ALIDE_RS19985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021676	Protein of unknown function DUF3262		PF11660|TIGR03758
ALIDE_RS19990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021356	Integrating conjugative element protein PFL4702		PF11190|TIGR03745
ALIDE_RS19995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021877	Protein of unknown function DUF3487		PF11990|TIGR03750
ALIDE_RS20000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021548	Protein of unknown function DUF2895		PF11444|TIGR03746
ALIDE_RS20005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021844	Integrating conjugative element protein, PFL4704		PF11920|TIGR03749
ALIDE_RS20010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021207	Integrating conjugative element protein, PFL4705		TIGR03752
ALIDE_RS20015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022262	Lipoprotein, putative		TIGR03751
ALIDE_RS20020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022303|IPR025955|IPR027417	Conjugative transfer ATPase|P-loop containing nucleoside triphosphate hydrolase|Type-IV secretion system protein TraC/Conjugative transfer ATPase		G3DSA:3.40.50.300|PF11130|SSF52540|TIGR03744
ALIDE_RS20025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012336	Thioredoxin-like fold		G3DSA:3.40.30.10|PF13462|SSF52833
ALIDE_RS20030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025657	RadC-like JAB domain		G3DSA:3.40.140.10|PF04002|PTHR30471|PTHR30471:SF5|SSF102712
ALIDE_RS20035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011090	Integrating conjugative element protein, PFL4709		PF07511|TIGR03757
ALIDE_RS20040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009649|IPR026331	Integrating conjugative element protein PFL_4710|TraU		PF06834|TIGR03756
ALIDE_RS20045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR021204	Integrating conjugative element protein, PFL4711		TIGR03755
ALIDE_RS20055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012931	TraG-like, N-terminal		PF07916
ALIDE_RS20060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR022213	Protein of unknown function DUF3742		PF12553
ALIDE_RS20065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014914	RES domain		PF08808|SM00953
ALIDE_RS20075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011093|IPR011119|IPR011991|IPR022391	Integrating conjugative element relaxase, PFGI-1 class|Putative conjugal transfer nickase/helicase TraI, C-terminal|Uncharacterised domain, helicase/relaxase, putative|Winged helix-turn-helix DNA-binding domain		G3DSA:2.40.10.200|PF07514|PF07515|SSF46785|TIGR03760
ALIDE_RS20080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027417	P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF13521|SSF52540
ALIDE_RS20090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1		G3DSA:3.40.50.1820|PF12697|SSF53474
ALIDE_RS20095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025178	Domain of unknown function DUF4105		PF13387
ALIDE_RS20100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001584|IPR009057|IPR012337	Homeodomain-like|Integrase, catalytic core|Ribonuclease H-like domain	GO:0003676|GO:0003677|GO:0015074	G3DSA:1.10.10.60|G3DSA:3.30.420.10|PF00665|PTHR35004|PTHR35004:SF2
ALIDE_RS20105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002611|IPR003593|IPR027417|IPR028350	AAA+ ATPase domain|DNA replication protein DnaC/insertion sequence putative ATP-binding protein|IstB-like ATP-binding protein|P-loop containing nucleoside triphosphate hydrolase	GO:0005524	G3DSA:3.40.50.300|PF01695|PIRSF003073|PTHR30050|PTHR30050:SF6|SM00382|SSF52540
ALIDE_RS20120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014914	RES domain		PF08808|SM00953
ALIDE_RS20125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR024467	Domain of unknown function DUF2384		PF09722
ALIDE_RS20130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002701|IPR020822	Chorismate mutase|Chorismate mutase, type II	GO:0046417	G3DSA:1.20.59.10|PF01817|SM00830|SSF48600
ALIDE_RS20135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005256|IPR005801|IPR006805|IPR015890|IPR019999	ADC synthase|Anthranilate synthase component I, N-terminal|Anthranilate synthase component I, PabB-like|Anthranilate synthase component I-like|Chorismate-utilising enzyme, C-terminal	GO:0000162|GO:0004049|GO:0009058|GO:0016833	G3DSA:3.60.120.10|PF00425|PF04715|PR00095|PTHR11236|PTHR11236:SF9|SSF56322|TIGR00564
ALIDE_RS20140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003660|IPR004089|IPR004090|IPR024478	4HB MCP domain|Chemotaxis methyl-accepting receptor|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain	GO:0004871|GO:0006935|GO:0007165|GO:0016020|GO:0016021	G3DSA:1.10.287.950|PF00015|PF00672|PF12729|PR00260|PTHR32089|PTHR32089:SF63|SM00283|SM00304|SSF58104
ALIDE_RS20145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001610|IPR001633|IPR003660|IPR013767|IPR029095|IPR029787	EAL domain|GGDEF domain|HAMP domain|NarX-like, N-terminal|Nucleotide cyclase|PAC motif|PAS domain|PAS fold	GO:0004871|GO:0006355|GO:0007165|GO:0016021	G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.70.270|PF00563|PF00672|PF00989|PF00990|PF13426|PF13675|PTHR10799|PTHR10799:SF774|SM00052|SM00086|SM00091|SM00267|SM00304|SSF141868|SSF158472|SSF55073|SSF55785|TIGR00229|TIGR00254
ALIDE_RS20150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006346|IPR006439|IPR023198|IPR023214	2-phosphoglycolate phosphatase, prokaryotic|HAD hydrolase, subfamily IA|HAD-like domain|Phosphoglycolate phosphatase, domain 2	GO:0008152|GO:0008967|GO:0016787|GO:0046295	G3DSA:1.10.150.240|G3DSA:3.40.50.1000|PF13419|PR00413|PTHR18901|PTHR18901:SF14|SSF56784|TIGR01449|TIGR01509|TIGR01549
ALIDE_RS20160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000056|IPR011060|IPR013785|IPR026019	Aldolase-type TIM barrel|Ribulose-phosphate 3-epimerase|Ribulose-phosphate 3-epimerase-like|Ribulose-phosphate binding barrel	GO:0003824|GO:0004750|GO:0005975|GO:0006098|GO:0008152|GO:0016857	G3DSA:3.20.20.70|PF00834|PIRSF001461|PS01085|PS01086|PTHR11749|PTHR11749:SF7|SSF51366|TIGR01163
ALIDE_RS20165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007474|IPR023065	ApaG domain|Uncharacterised protein family ApaG		G3DSA:2.60.40.1470|MF_00791|PF04379|PTHR14289|SSF110069
ALIDE_RS20170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011385	Site-specific recombinase Gcr		PF10136|PIRSF015380
ALIDE_RS20175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006153	Cation/H+ exchanger	GO:0006812|GO:0015299|GO:0016021|GO:0055085	PF00999
ALIDE_RS20180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006336|IPR011793	Glutamate--cysteine ligase, GCS2|Putative glutamate--cysteine ligase YbdK	GO:0004357|GO:0016879|GO:0042398	MF_01609|PF04107|PTHR36510|PTHR36510:SF1|SSF55931|TIGR02050
ALIDE_RS20185	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006283|IPR010918|IPR016188	AIR synthase-related protein, C-terminal domain|PurM-like, N-terminal domain|Thiamine-monophosphate kinase	GO:0009030|GO:0009228	G3DSA:3.30.1330.10|G3DSA:3.90.650.10|MF_02128|PF00586|PF02769|PIRSF005303|PTHR30270|PTHR30270:SF0|SSF55326|SSF56042|TIGR01379
ALIDE_RS20190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001647|IPR009057|IPR015893|IPR023772	DNA-binding HTH domain, TetR-type|DNA-binding HTH domain, TetR-type, conserved site|Homeodomain-like|Tetracycline transcriptional regulator, TetR-like, C-terminal	GO:0003677	G3DSA:1.10.357.10|PF00440|PR00455|PS01081|PTHR30055|SSF46689
ALIDE_RS20195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010941|IPR022211|IPR029058	Alpha/Beta hydrolase fold|Poly-beta-hydroxybutyrate polymerase N-terminal|Poly-beta-hydroxybutyrate polymerase, N-terminal domain	GO:0042619	G3DSA:3.40.50.1820|PF07167|PF12551|PTHR36837|PTHR36837:SF2|SSF53474
ALIDE_RS20200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003423|IPR010131	Outer membrane efflux protein|RND efflux system, outer membrane lipoprotein, NodT	GO:0005215|GO:0006810|GO:0008289|GO:0016020	G3DSA:1.20.1600.10|G3DSA:2.20.200.10|PF02321|PTHR30203|PTHR30203:SF15|SSF56954|TIGR01845
ALIDE_RS20205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				G3DSA:2.40.50.100|PF13437|PTHR30438|PTHR30438:SF1|SSF111369
ALIDE_RS20210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12698|PS00211|PTHR24220|PTHR24220:SF388|SM00382|SSF52540
ALIDE_RS20215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PF12698|PTHR30294|PTHR30294:SF22
ALIDE_RS20220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002505|IPR002539|IPR029069	HotDog domain|MaoC-like domain|Phosphate acetyl/butaryl transferase	GO:0008152|GO:0016746	G3DSA:3.10.129.10|G3DSA:3.40.50.10750|PF01515|PF01575|PTHR13078|SSF53659|SSF54637
ALIDE_RS20225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000890|IPR004372|IPR023865	Acetate/propionate kinase|Aliphatic acid kinase, short-chain|Aliphatic acid kinase, short-chain, conserved site	GO:0005622|GO:0006082|GO:0008152|GO:0016301|GO:0016310|GO:0016774	G3DSA:3.30.420.40|MF_00020|PF00871|PIRSF000722|PR00471|PS01075|PTHR21060|PTHR21060:SF11|SSF53067|TIGR00016
ALIDE_RS20230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007686|IPR026037	Phosphatidylglycerophosphatase A|YutG/PgpA domain	GO:0006629|GO:0008962	PF04608|PIRSF006162|PTHR36305|SSF101307
ALIDE_RS20235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008136	CinA, C-terminal		G3DSA:3.90.950.20|PF02464|PTHR13939|SSF142433|TIGR00199
ALIDE_RS20240	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003122|IPR003660|IPR004089|IPR004090	Chemotaxis methyl-accepting receptor|Chemotaxis methyl-accepting receptor, ligand-binding|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain	GO:0004871|GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021	G3DSA:1.10.287.950|PF00015|PF00672|PF02203|PR00260|PTHR32089|PTHR32089:SF63|SM00283|SM00304|SSF58104
ALIDE_RS20245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR001633|IPR003122|IPR003660|IPR029787	Chemotaxis methyl-accepting receptor, ligand-binding|EAL domain|GGDEF domain|HAMP domain|Nucleotide cyclase	GO:0004871|GO:0004888|GO:0006935|GO:0007165|GO:0016020|GO:0016021	G3DSA:3.20.20.450|G3DSA:3.30.70.270|PF00563|PF00672|PF00990|PF02203|PTHR33121|PTHR33121:SF13|SM00052|SM00267|SM00304|SSF141868|SSF158472|SSF55073|TIGR00254
ALIDE_RS20250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR005561|IPR008327|IPR011006|IPR011991	ANTAR domain|CheY-like superfamily|Signal transduction response regulator, antiterminator|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003723	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF03861|PIRSF036382|PTHR26402|SM00448|SM01012|SSF52172
ALIDE_RS20255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR003594|IPR011495	Histidine kinase-like ATPase, C-terminal domain|PAS domain|Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain		G3DSA:3.30.450.20|PF07568|PF13426|PTHR24423|PTHR24423:SF472|SSF55785|SSF55874|TIGR00229
ALIDE_RS20260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004027|IPR011978|IPR032710	NTF2-like domain|SEC-C motif|Uncharacterised protein family UPF0149		G3DSA:3.10.450.50|PF02810|PF03695|PTHR33747|PTHR33747:SF1|SSF101327|SSF103642
ALIDE_RS20265	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002716|IPR002850|IPR029060	PIN domain|PIN domain-like|PIN family, putative toxin-antitoxin system toxin component		G3DSA:3.40.50.1010|PF13470|PTHR34610|PTHR34610:SF3|SSF88723|TIGR00305
ALIDE_RS20270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000241|IPR004114|IPR029063	Putative RNA methylase domain|S-adenosyl-L-methionine-dependent methyltransferase|THUMP domain	GO:0003723	G3DSA:3.40.50.150|PF01170|PF02926|PTHR14911|PTHR14911:SF13|SM00981|SSF53335
ALIDE_RS20275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003660|IPR004089|IPR029151|IPR033479	Double Cache domain 1|HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain|Periplasmic sensor domain-like	GO:0004871|GO:0007165|GO:0016020|GO:0016021	G3DSA:1.10.287.950|G3DSA:3.30.450.20|PF00015|PF00672|PF02743|PTHR32089|PTHR32089:SF63|SM00283|SM00304|SSF103190|SSF58104
ALIDE_RS20280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029069	HotDog domain		G3DSA:3.10.129.10|PF13279|PTHR31793|SSF54637
ALIDE_RS20285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000394|IPR007046|IPR007634	RNA polymerase sigma factor 54|RNA polymerase sigma factor 54, DNA-binding|RNA polymerase sigma factor 54, core-binding	GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987	PF00309|PF04552|PF04963|PIRSF000774|PR00045|PS00717|PS00718|PTHR32248|PTHR32248:SF4|TIGR02395
ALIDE_RS20290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR030921|IPR032823	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|LPS export ABC transporter, ATP-binding protein LptB|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887|GO:0043190|GO:0055085	G3DSA:3.40.50.300|PF00005|PF12399|PS00211|PTHR24220|PTHR24220:SF497|SM00382|SSF52540|TIGR04406
ALIDE_RS20295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005653|IPR014340	Lipopolysaccharide export system protein LptA|Organic solvent tolerance-like, N-terminal	GO:0001530|GO:0015920|GO:0042597	G3DSA:2.60.450.10|MF_01914|PF03968|PTHR36504|TIGR03002
ALIDE_RS20300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001853|IPR012336|IPR023205	DSBA-like thioredoxin domain|Thiol:disulphide interchange protein DsbA/DsbL|Thioredoxin-like fold	GO:0015035	G3DSA:3.40.30.10|PF01323|PIRSF001488|PTHR35891|PTHR35891:SF2|SSF52833
ALIDE_RS20305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007730	Sporulation-related domain	GO:0042834	G3DSA:3.30.70.1070|PF05036|SSF110997
ALIDE_RS20310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001278|IPR001412|IPR005148|IPR008909|IPR009080|IPR014729	Aminoacyl-tRNA synthetase, class 1a, anticodon-binding|Aminoacyl-tRNA synthetase, class I, conserved site|Arginine-tRNA ligase|Arginyl tRNA synthetase N-terminal domain|DALR anticodon binding|Rossmann-like alpha/beta/alpha sandwich fold	GO:0000166|GO:0004812|GO:0004814|GO:0005524|GO:0005737|GO:0006418|GO:0006420	G3DSA:1.10.730.10|G3DSA:3.30.1360.70|G3DSA:3.40.50.620|MF_00123|PF00750|PF03485|PF05746|PR01038|PS00178|PTHR11956|PTHR11956:SF6|SM00836|SM01016|SSF47323|SSF52374|SSF55190|TIGR00456
ALIDE_RS20315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011690	Phosphate-starvation-induced PsiF repeat		PF07769
ALIDE_RS20320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018706	Protein of unknown function DUF2214, membrane		PF09980
ALIDE_RS20325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001991|IPR018107|IPR023954	C4-dicarboxylate transport protein|Sodium:dicarboxylate symporter|Sodium:dicarboxylate symporter, conserved site	GO:0006835|GO:0015293|GO:0016021	G3DSA:1.10.3860.10|MF_01300|PF00375|PR00173|PS00713|PS00714|PTHR11958|PTHR11958:SF49|SSF118215
ALIDE_RS20330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR001789|IPR003594|IPR003661|IPR004358|IPR011006|IPR029151|IPR033479	CheY-like superfamily|Double Cache domain 1|Histidine kinase-like ATPase, C-terminal domain|PAS domain|Periplasmic sensor domain-like|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal|Signal transduction response regulator, receiver domain	GO:0000155|GO:0000160|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|G3DSA:3.40.50.2300|PF00072|PF00512|PF02518|PF02743|PF12860|PR00344|PTHR24423|PTHR24423:SF479|SM00387|SM00388|SM00448|SSF103190|SSF47384|SSF52172|SSF55785|SSF55874
ALIDE_RS20335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000792|IPR001789|IPR011006|IPR011991|IPR016032	CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|PTHR26402|PTHR26402:SF474|SM00421|SM00448|SSF46894|SSF52172
ALIDE_RS20340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF5|SSF46785|SSF53850
ALIDE_RS20345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001465|IPR006253|IPR011076|IPR023310	Malate synthase|Malate synthase G|Malate synthase G, beta sub-domain|Malate synthase-like	GO:0003824|GO:0004474|GO:0006097	G3DSA:1.10.1860.10|G3DSA:1.20.1220.12|G3DSA:2.170.170.11|G3DSA:3.20.20.360|MF_00641|PF01274|PTHR21631|PTHR21631:SF7|SSF51645|TIGR01345
ALIDE_RS20350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004370|IPR014347|IPR018191	4-oxalocrotonate tautomerase|4-oxalocrotonate tautomerase, Pseudomonas-type|Tautomerase/MIF superfamily	GO:0006725|GO:0016853	G3DSA:3.30.429.20|PF01361|SSF55331|TIGR00013
ALIDE_RS20355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003748	Protein of unknown function DUF169		PF02596|PTHR37954|PTHR37954:SF1
ALIDE_RS20360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR026869|IPR029055	Nucleophile aminohydrolases, N-terminal|Putative glutamine amidotransferase type 2		G3DSA:3.60.20.10|PF13230|PTHR11907|PTHR11907:SF10|SSF56235
ALIDE_RS20390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004215|IPR004218|IPR006284|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Glutathione synthetase, prokaryotic|Pre-ATP-grasp domain|Prokaryotic glutathione synthetase, ATP-binding|Prokaryotic glutathione synthetase, N-terminal	GO:0003824|GO:0004363|GO:0005524|GO:0005829|GO:0006750	G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_00162|PF02951|PF02955|PTHR21621|PTHR21621:SF4|SSF52440|SSF56059|TIGR01380
ALIDE_RS20395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004711	Benzoate transporter	GO:0016021|GO:0042919|GO:0042925	PF03594|PTHR30199|PTHR30199:SF0|TIGR00843
ALIDE_RS20400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003855|IPR023051	Potassium transporter|Potassium uptake protein, low affinity, Kup	GO:0015079|GO:0016020|GO:0071805	MF_01522|PF02705|PTHR30540|PTHR30540:SF7
ALIDE_RS20405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011718	Glutamate--cysteine ligase GshA		PF08886|TIGR02049
ALIDE_RS20410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003445|IPR004772	Cation transporter|TrkH potassium transport family	GO:0006812|GO:0008324|GO:0016021|GO:0022820|GO:0055085|GO:0071805	PF02386|PIRSF006247|PTHR32024|PTHR32024:SF2
ALIDE_RS20415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003148|IPR006036|IPR006037|IPR016040	NAD(P)-binding domain|Potassium uptake protein TrkA|Regulator of K+ conductance, C-terminal|Regulator of K+ conductance, N-terminal	GO:0005886|GO:0006813|GO:0008324|GO:0015079	G3DSA:3.40.50.720|PF02080|PF02254|PR00335|PTHR13789|PTHR13789:SF225|SSF116726|SSF51735
ALIDE_RS20420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000965|IPR012134|IPR015590|IPR016161|IPR016162|IPR016163|IPR020593	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde/histidinol dehydrogenase|GPR domain|Gamma-glutamyl phosphate reductase GPR, conserved site|Glutamate-5-semialdehyde dehydrogenase	GO:0004350|GO:0006561|GO:0008152|GO:0016491|GO:0016620|GO:0050661|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|MF_00412|PF00171|PIRSF000151|PS01223|PTHR11063|PTHR11063:SF8|SSF53720|TIGR00407
ALIDE_RS20430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013816	ATP-grasp fold, subdomain 2	GO:0005524	G3DSA:3.30.470.20|SSF56059
ALIDE_RS20435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001506|IPR006026|IPR024079	Metallopeptidase, catalytic domain|Peptidase M12A, astacin|Peptidase, metallopeptidase	GO:0004222|GO:0006508|GO:0008237|GO:0008270	G3DSA:3.40.390.10|PF01400|PR00480|PTHR10127|SM00235|SSF55486
ALIDE_RS20445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005790|IPR008921|IPR010372|IPR027417	DNA polymerase III delta, N-terminal|DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal|DNA polymerase III, delta subunit|P-loop containing nucleoside triphosphate hydrolase	GO:0003677|GO:0003887|GO:0006260|GO:0009360	G3DSA:1.10.8.60|G3DSA:1.20.272.20|G3DSA:3.40.50.300|PF06144|PTHR34388|SSF48019|SSF52540|TIGR01128
ALIDE_RS20450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007485	LPS-assembly lipoprotein LptE	GO:0019867|GO:0043165	G3DSA:3.30.160.150|MF_01186|PF04390|PTHR38098|PTHR38098:SF1
ALIDE_RS20455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001412|IPR002300|IPR002302|IPR009008|IPR009080|IPR013155|IPR014729|IPR015413|IPR025709	Aminoacyl-tRNA synthetase, class 1a, anticodon-binding|Aminoacyl-tRNA synthetase, class I, conserved site|Aminoacyl-tRNA synthetase, class Ia|Leucine-tRNA ligase|Leucyl-tRNA synthetase, editing domain|Methionyl/Leucyl tRNA synthetase|Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding|Rossmann-like alpha/beta/alpha sandwich fold|Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	GO:0000166|GO:0002161|GO:0004812|GO:0004823|GO:0005524|GO:0006418|GO:0006429	G3DSA:1.10.730.10|G3DSA:3.40.50.620|G3DSA:3.90.740.10|MF_00049_B|PF00133|PF08264|PF09334|PF13603|PR00985|PS00178|PTHR11946|PTHR11946:SF7|SSF47323|SSF50677|SSF52374|TIGR00396
ALIDE_RS20460	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006685|IPR010920|IPR030192	LSM domain|Mechanosensitive ion channel MscS|Miniconductance mechanosensitive channel YbdG	GO:0008381|GO:0016020|GO:0016021|GO:0055085|GO:0071470	G3DSA:2.30.30.60|PF00924|PTHR30414|PTHR30414:SF0|SSF50182
ALIDE_RS20465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|PTHR11699|PTHR11699:SF97|SSF53720
ALIDE_RS20470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012910	TonB-dependent receptor, plug domain	GO:0004872|GO:0006810|GO:0016020	G3DSA:2.170.130.10|PF07715|PTHR32552|PTHR32552:SF13|SSF56935
ALIDE_RS20475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002078|IPR002197|IPR003018|IPR003593|IPR009057|IPR025662|IPR025943|IPR025944|IPR027417|IPR029016	AAA+ ATPase domain|DNA binding HTH domain,  Fis-type|GAF domain|GAF domain-like|Homeodomain-like|P-loop containing nucleoside triphosphate hydrolase|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2|Sigma-54 interaction domain, conserved site	GO:0003677|GO:0005515|GO:0005524|GO:0006355|GO:0008134|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.40|G3DSA:3.40.50.300|PF00158|PF01590|PF02954|PS00675|PS00676|PS00688|PTHR32071|PTHR32071:SF5|SM00382|SSF46689|SSF52540|SSF55781
ALIDE_RS20480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009056|IPR030991	Cytochrome c-550 PedF|Cytochrome c-like domain	GO:0009055|GO:0020037	G3DSA:1.10.760.10|PF13442|SSF46626|TIGR04494
ALIDE_RS20485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR000160|IPR001610|IPR001633|IPR003018|IPR013767|IPR029016|IPR029787	EAL domain|GAF domain|GAF domain-like|GGDEF domain|Nucleotide cyclase|PAC motif|PAS domain|PAS fold	GO:0005515|GO:0006355	G3DSA:3.20.20.450|G3DSA:3.30.450.20|G3DSA:3.30.450.40|G3DSA:3.30.70.270|PF00563|PF00989|PF00990|PF13185|PIRSF005925|PTHR10799|PTHR10799:SF774|SM00052|SM00065|SM00086|SM00091|SM00267|SSF141868|SSF55073|SSF55781|SSF55785|TIGR00229|TIGR00254
ALIDE_RS20490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003400	Biopolymer transport protein ExbD/TolR	GO:0005215|GO:0006810|GO:0016020	PF02472|PTHR30558
ALIDE_RS20495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002898	MotA/TolQ/ExbB proton channel	GO:0006810|GO:0008565|GO:0016020	PF01618|PTHR30625|PTHR30625:SF3
ALIDE_RS20500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000846|IPR016040|IPR022663|IPR022664|IPR023940	Dihydrodipicolinate reductase|Dihydrodipicolinate reductase, C-terminal|Dihydrodipicolinate reductase, N-terminal|Dihydrodipicolinate reductase, conserved site|NAD(P)-binding domain	GO:0008839|GO:0009089|GO:0055114	G3DSA:3.40.50.720|MF_00102|PF01113|PF05173|PIRSF000161|PS01298|PTHR20836|PTHR20836:SF0|SSF51735|SSF55347|TIGR00036
ALIDE_RS20505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007450|IPR026592	Lipoprotein SmpA/OmlA|Outer membrane protein assembly factor BamE	GO:0019867	MF_00925|PF04355|PTHR37482|PTHR37482:SF1
ALIDE_RS20510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002481|IPR011991	Ferric-uptake regulator|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|PF01475|PTHR33202|SSF46785
ALIDE_RS20515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003755|IPR011104|IPR011126|IPR027417|IPR028979	HPr kinase/phosphorylase, C-terminal|HPr(Ser)  kinase/phosphorylase|HPr(Ser) kinase/phosphorylase, N-terminal|HPr(Ser) kinase/phosphorylase, N-terminal domain-like|P-loop containing nucleoside triphosphate hydrolase	GO:0000155|GO:0000160|GO:0004672|GO:0005524|GO:0006109	G3DSA:3.40.1390.20|G3DSA:3.40.50.300|MF_01249|PF02603|PF07475|PTHR30305|PTHR30305:SF1|SSF53795|SSF75138|TIGR00679
ALIDE_RS20520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002178|IPR016152	PTS EIIA type-2 domain|Phosphotransferase/anion transporter	GO:0005215|GO:0006810	G3DSA:3.40.930.10|PF00359|PS00372|PTHR30505|PTHR30505:SF6|SSF55804
ALIDE_RS20525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	GO:0044238	G3DSA:3.30.160.100|PF02482|PTHR33231|SSF69754|TIGR00741
ALIDE_RS20530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001636|IPR013816|IPR018236|IPR028923	ATP-grasp fold, subdomain 2|Phosphoribosylaminoimidazole-succinocarboxamide synthase|SAICAR synthetase, conserved site|SAICAR synthetase/ADE2, N-terminal	GO:0004639|GO:0005524|GO:0006164	G3DSA:3.30.200.20|G3DSA:3.30.470.20|MF_00137|PF01259|PS01057|PS01058|PTHR11609|PTHR11609:SF6|SSF56104|TIGR00081
ALIDE_RS20535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005746|IPR011990|IPR012336|IPR013766|IPR017937	Tetratricopeptide-like helical domain|Thioredoxin|Thioredoxin domain|Thioredoxin, conserved site|Thioredoxin-like fold	GO:0005515|GO:0006662|GO:0015035|GO:0045454	G3DSA:1.25.40.10|G3DSA:3.40.30.10|PF00085|PF14559|PF14561|PR00421|PS00194|PTHR10438|PTHR10438:SF281|SSF48452|SSF52833|TIGR01068
ALIDE_RS20540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000031|IPR024694	N5-carboxyaminoimidazole ribonucleotide mutase PurE|Phosphoribosylaminoimidazole carboxylase PurE domain	GO:0006189|GO:0034023	G3DSA:3.40.50.7700|MF_01929|PF00731|PIRSF001338|PTHR23046|PTHR23046:SF2|SM01001|SSF52255|TIGR01162
ALIDE_RS20545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003135|IPR005875|IPR011054|IPR013815|IPR013816|IPR016185	ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type|ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Phosphoribosylaminoimidazole carboxylase, ATPase subunit|Pre-ATP-grasp domain|Rudiment single hybrid motif	GO:0003824|GO:0004638|GO:0005524|GO:0006189	G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|MF_01928|PF02222|PTHR11609|PTHR11609:SF5|SSF51246|SSF52440|SSF56059|TIGR01161
ALIDE_RS20550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005145|IPR006070|IPR010923|IPR017945	DHBP synthase RibB-like alpha/beta domain|Putative GTP-binding controlling metal-binding domain|YrdC-like domain|tRNA threonylcarbamoyladenosine biosynthesis protein SUA5	GO:0003725	G3DSA:3.90.870.10|PF01300|PF03481|PIRSF004930|PTHR17490|SSF55821|TIGR00057
ALIDE_RS20555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013830	SGNH hydrolase-type esterase domain		G3DSA:3.40.50.1110|PTHR22835|PTHR22835:SF222|SSF52266
ALIDE_RS20565	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004256|IPR027417	Domain of unknown function DUF234, DEXX-box ATPase C-terminal|P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.50.300|PF03008|PTHR34704|SSF52540
ALIDE_RS20575	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016634|IPR026881	Transcription regulator, DeoR type, predicted|WYL domain		PF13280|PIRSF015558
ALIDE_RS20580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982	Lambda repressor-like, DNA-binding domain	GO:0003677	G3DSA:1.10.260.40
ALIDE_RS20595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR024442|IPR024445	ISXO2-like transposase domain|Transposase, zinc-ribbon		PF12760|PF12762|SM01126
ALIDE_RS20600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002559|IPR008490	Transposase InsH, N-terminal|Transposase, IS4-like	GO:0003677|GO:0004803|GO:0006313	PF01609|PF05598
ALIDE_RS20615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005618|IPR011250	Outer membrane protein, OmpW|Outer membrane protein/outer membrane enzyme PagP,  beta-barrel	GO:0016021|GO:0019867	G3DSA:2.40.160.20|PF03922|PTHR36920|PTHR36920:SF1|SSF56925
ALIDE_RS20620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029058	Alpha/Beta hydrolase fold		G3DSA:3.40.50.1820|SSF53474
ALIDE_RS20625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000667|IPR012338	Beta-lactamase/transpeptidase-like|Peptidase S13, D-Ala-D-Ala carboxypeptidase C	GO:0004185|GO:0006508	G3DSA:3.40.710.10|PF02113|PR00922|PTHR30023|PTHR30023:SF0|SSF56601|TIGR00666
ALIDE_RS20630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000905|IPR022496	Gcp-like domain|tRNA threonylcarbamoyl adenosine modification protein YeaZ	GO:0002949	G3DSA:3.30.420.40|PF00814|PTHR11735|PTHR11735:SF11|SSF53067|TIGR03725
ALIDE_RS20635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000182|IPR006464|IPR016181	Acyl-CoA N-acyltransferase|GNAT domain|Ribosomal-protein-alanine acetyltransferase	GO:0006474|GO:0008080|GO:0016407	G3DSA:3.40.630.30|PF00583|PTHR23091|SSF55729|TIGR01575
ALIDE_RS20645	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002523|IPR004488	Magnesium/cobalt transport protein CorA|Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020|GO:0030001|GO:0046873|GO:0055085	G3DSA:1.20.58.340|PF01544|PTHR21535|PTHR21535:SF37|SSF143865|SSF144083|TIGR00383
ALIDE_RS20660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000845|IPR018017	Nucleoside phosphorylase|Nucleoside phosphorylase domain	GO:0003824|GO:0009116	G3DSA:3.40.50.1580|PF01048|PTHR21234|SSF53167
ALIDE_RS20665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PS00455|PTHR24096|SSF56801
ALIDE_RS20670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012136|IPR029035	DHS-like NAD/FAD-binding domain|NADP transhydrogenase, beta subunit	GO:0008750|GO:0016021|GO:0050661|GO:0055114	G3DSA:3.40.50.1220|PF02233|PIRSF000204|PTHR10160|SSF52467
ALIDE_RS20675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007698|IPR007886|IPR016040|IPR024605|IPR026255	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal|Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain|NAD(P) transhydrogenase, alpha subunit|NAD(P) transhydrogenase, alpha subunit, C-terminal|NAD(P)-binding domain	GO:0008746|GO:0015992|GO:0055114	G3DSA:3.40.50.1770|PF01262|PF05222|PF12769|PIRSF000203|PTHR10160|SM01002|SM01003|SSF51735|SSF52283|TIGR00561
ALIDE_RS20685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000771|IPR006412|IPR013785	Aldolase-type TIM barrel|Fructose-bisphosphate aldolase, class II, Calvin cycle subtype|Ketose-bisphosphate aldolase, class-II	GO:0003824|GO:0004332|GO:0005975|GO:0006096|GO:0008270|GO:0016832	G3DSA:3.20.20.70|PF01116|PIRSF001359|PS00602|PS00806|PTHR30304|SSF51569|TIGR00167|TIGR01521
ALIDE_RS20690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001697|IPR011037|IPR015793|IPR015794|IPR015795|IPR015806|IPR015813	Pyruvate kinase|Pyruvate kinase, C-terminal|Pyruvate kinase, alpha/beta|Pyruvate kinase, barrel|Pyruvate kinase, beta-barrel insert domain|Pyruvate kinase-like, insert domain|Pyruvate/Phosphoenolpyruvate kinase-like domain	GO:0000287|GO:0003824|GO:0004743|GO:0006096|GO:0030955	G3DSA:2.40.33.10|G3DSA:3.20.20.60|G3DSA:3.40.1380.20|PF00224|PF02887|PR01050|PTHR11817|PTHR11817:SF17|SSF50800|SSF51621|SSF52935|TIGR01064
ALIDE_RS20695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000994|IPR007865|IPR028980|IPR029149	Aminopeptidase P, N-terminal|Creatinase/Aminopeptidase P, N-terminal|Creatinase/Aminopeptidase P/Spt16, N-terminal|Peptidase M24, structural domain	GO:0004177|GO:0030145	G3DSA:3.40.350.10|G3DSA:3.90.230.10|PF00557|PF05195|PTHR10804|PTHR10804:SF17|SM01011|SSF53092|SSF55920
ALIDE_RS20700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR029045	ClpP/crotonase-like domain|Crotonase superfamily	GO:0003824|GO:0008152	G3DSA:3.90.226.10|PF00378|PTHR11941|PTHR11941:SF54|SSF52096
ALIDE_RS20705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS20710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS20715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020617	Thiolase|Thiolase, C-terminal|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF02803|PIRSF000429|PTHR18919|PTHR18919:SF108|SSF53901
ALIDE_RS20720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002878|IPR012340|IPR022002	Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold		PF01796|PF12172|PTHR34075|PTHR34075:SF2|SSF50249
ALIDE_RS20725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS20730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30419|PTHR30419:SF2|SSF46785|SSF53850
ALIDE_RS20735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025877|IPR029044	MobA-like NTP transferase|Nucleotide-diphospho-sugar transferases		G3DSA:3.90.550.10|PF12804|PTHR22572|SSF53448
ALIDE_RS20740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005474|IPR005475|IPR005478|IPR009014|IPR029061|IPR033247|IPR033248	Thiamin diphosphate-binding fold|Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II|Transketolase family|Transketolase, C-terminal domain|Transketolase, N-terminal|Transketolase, bacterial-like|Transketolase-like, pyrimidine-binding domain	GO:0003824|GO:0004802|GO:0008152	G3DSA:3.40.50.920|G3DSA:3.40.50.970|PF00456|PF02779|PF02780|PS00801|PTHR11624|PTHR11624:SF1|SM00861|SSF52518|SSF52922|TIGR00232
ALIDE_RS20745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006424|IPR016040|IPR020828|IPR020829|IPR020830|IPR020831	Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain|Glyceraldehyde 3-phosphate dehydrogenase, active site|Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain|Glyceraldehyde-3-phosphate dehydrogenase, type I|Glyceraldehyde/Erythrose phosphate dehydrogenase family|NAD(P)-binding domain	GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114	G3DSA:3.30.360.10|G3DSA:3.40.50.720|PF00044|PF02800|PIRSF000149|PR00078|PS00071|PTHR10836|PTHR10836:SF31|SM00846|SSF51735|SSF55347|TIGR01534
ALIDE_RS20750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	GO:0044238	G3DSA:3.30.160.100|PF02482|SSF69754
ALIDE_RS20755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011697|IPR029062	Class I glutamine amidotransferase-like|Peptidase C26	GO:0006541|GO:0016787	G3DSA:3.40.50.880|PF07722|PTHR11922|PTHR11922:SF18|SSF52317
ALIDE_RS20760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30293|SSF46785|SSF53850
ALIDE_RS20765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006680|IPR032466	Amidohydrolase-related|Metal-dependent hydrolase	GO:0016787	G3DSA:3.20.20.140|PF04909|PTHR35563|PTHR35563:SF1|SSF51556
ALIDE_RS20770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PTHR24321|PTHR24321:SF6|SSF51735
ALIDE_RS20775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS20780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003779|IPR029032	AhpD-like|Carboxymuconolactone decarboxylase-like	GO:0051920|GO:0055114	G3DSA:1.20.1290.10|PF02627|PTHR34846|PTHR34846:SF2|SSF69118
ALIDE_RS20790	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005625	PepSY-associated TM protein		PF03929|PTHR34219|PTHR34219:SF1
ALIDE_RS20795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR010105|IPR012910|IPR030149	TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain|TonB-dependent siderophore receptor|TonB-dependent siderophore receptor FcuA/FatA	GO:0004872|GO:0005506|GO:0006810|GO:0009279|GO:0015891|GO:0016020|GO:0016021	G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PTHR32552|PTHR32552:SF14|SSF56935|TIGR01783
ALIDE_RS20800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023566	Peptidyl-prolyl cis-trans isomerase, FKBP-type		G3DSA:3.10.50.40|PTHR10516|PTHR10516:SF316|SSF54534
ALIDE_RS20805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS20810	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic				PTHR13943|PTHR13943:SF48
ALIDE_RS20815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010839	Protein of unknown function DUF1446		PF07287|PTHR13943|PTHR13943:SF48
ALIDE_RS20820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30537|PTHR30537:SF5|SSF46785|SSF53850
ALIDE_RS20825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010499|IPR011256|IPR029442	Bacterial transcription activator, effector binding|GyrI-like small molecule binding domain|Regulatory factor, effector binding domain		G3DSA:3.20.80.10|PF06445|SM00871|SSF55136
ALIDE_RS20830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|PTHR24322|SSF51735
ALIDE_RS20840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005636	DTW		PF03942|PTHR21392|PTHR21392:SF1|SM01144
ALIDE_RS20845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|SM00346|SSF46785|SSF55781
ALIDE_RS20850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002155|IPR016039|IPR020616	Thiolase|Thiolase, N-terminal|Thiolase-like	GO:0003824|GO:0008152|GO:0016747	G3DSA:3.40.47.10|PF00108|PIRSF000429|PTHR18919|PTHR18919:SF108|SSF53901
ALIDE_RS20855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002878|IPR012340|IPR022002	Domain of unknown function DUF35, OB-fold, C-terminal|Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal|Nucleic acid-binding, OB-fold		PF01796|PF12172|PTHR34075|SSF50249
ALIDE_RS20860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS20865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003781|IPR013815|IPR016040|IPR016102|IPR032875	ATP-grasp fold, subdomain 1|CoA-binding|NAD(P)-binding domain|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain	GO:0003824|GO:0005524|GO:0048037	G3DSA:3.30.1490.20|G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|PTHR33303|PTHR33303:SF3|SM00881|SSF51735|SSF52210|SSF56059
ALIDE_RS20870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR004046|IPR010987|IPR012336	Glutathione S-transferase, C-terminal|Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold	GO:0005515	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF00043|PF02798|PTHR11260|PTHR11260:SF178|SSF47616|SSF52833
ALIDE_RS20875	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR		G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PTHR24322|SSF51735
ALIDE_RS20880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004360|IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase|Glyoxalase/fosfomycin resistance/dioxygenase domain		G3DSA:3.10.180.10|PF00903|PTHR35006|PTHR35006:SF1|SSF54593
ALIDE_RS20885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000380|IPR003121|IPR003601|IPR003602|IPR005738|IPR006171|IPR013497|IPR013824|IPR013825|IPR019835|IPR023405|IPR023406|IPR025589	DNA topoisomerase III|DNA topoisomerase, type IA|DNA topoisomerase, type IA, DNA-binding domain|DNA topoisomerase, type IA, active site|DNA topoisomerase, type IA, central|DNA topoisomerase, type IA, central region, subdomain 1|DNA topoisomerase, type IA, central region, subdomain 2|DNA topoisomerase, type IA, core domain|DNA topoisomerase, type IA, domain 2|SWIB domain|SWIB/MDM2 domain|Topoisomerase C-terminal repeat|Toprim domain	GO:0003677|GO:0003916|GO:0003917|GO:0005515|GO:0006265	G3DSA:1.10.245.10|G3DSA:1.10.460.10|G3DSA:2.70.20.10|G3DSA:3.40.50.140|PF01131|PF01751|PF02201|PF13342|PR00417|PS00396|PTHR11390|SM00151|SM00436|SM00437|SM00493|SSF47592|SSF56712|TIGR01056
ALIDE_RS20890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001214	SET domain	GO:0005515	G3DSA:2.170.270.10|PF00856|PTHR22884|PTHR22884:SF336|SM00317|SSF82199
ALIDE_RS20895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003142|IPR004143|IPR004408	Biotin protein ligase, C-terminal|Biotin--acetyl-CoA-carboxylase ligase|Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain	GO:0004077|GO:0006464	G3DSA:2.30.30.100|G3DSA:3.30.930.10|PF02237|PF03099|PTHR12835|SSF55681|TIGR00121
ALIDE_RS20900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007730	Sporulation-related domain	GO:0042834	SSF110997
ALIDE_RS20905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR011032|IPR013149|IPR013154|IPR016040|IPR020843	Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PTHR11695|PTHR11695:SF605|SM00829|SSF50129|SSF51735
ALIDE_RS20910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002539|IPR003965|IPR029069	Fatty acid synthase|HotDog domain|MaoC-like domain	GO:0004312|GO:0005835|GO:0006633|GO:0055114	G3DSA:3.10.129.10|PF01575|PR01483|PTHR13078|SSF54637
ALIDE_RS20915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016709|IPR029069	HotDog domain|Uncharacterised protein family UPF0336		G3DSA:3.10.129.10|PF13452|PIRSF018072|PTHR13078|PTHR13078:SF52|SSF54637
ALIDE_RS20920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|PTHR30483:SF17|SSF53822
ALIDE_RS20925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR020845|IPR025110|IPR032387	AMP-binding enzyme C-terminal domain|AMP-binding, conserved site|AMP-dependent synthetase/ligase|Acetyl-coenzyme A synthetase, N-terminal domain	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PF16177|PS00455|PTHR24095|PTHR24095:SF184|SSF56801
ALIDE_RS20930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000835|IPR011991|IPR023187	MarR-type HTH domain|Transcriptional regulator MarR-type, conserved site|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|PF12802|PS01117|PTHR33164|SM00347|SSF46785
ALIDE_RS20935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982|IPR024467	Domain of unknown function DUF2384|Lambda repressor-like, DNA-binding domain	GO:0003677	G3DSA:1.10.260.40|PF09722
ALIDE_RS20940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014914	RES domain		PF08808|SM00953
ALIDE_RS20945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003421|IPR008927|IPR013328|IPR013332|IPR016040	6-phosphogluconate dehydrogenase C-terminal domain-like|6-phosphogluconate dehydrogenase, domain 2|Ketopantoate reductase, N-terminal domain|NAD(P)-binding domain|Opine dehydrogenase	GO:0008677|GO:0016491|GO:0050662|GO:0055114	G3DSA:1.10.1040.10|G3DSA:3.40.50.720|PF02317|PF02558|SSF48179|SSF51735
ALIDE_RS20950	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS20955	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR003661|IPR004358|IPR013727	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal|Two-component sensor kinase, N-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.565.10|PF00512|PF02518|PF08521|PR00344|PTHR24423|PTHR24423:SF474|SM00387|SM00388|SSF47384|SSF55874
ALIDE_RS20960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF518|SM00448|SM00862|SSF52172
ALIDE_RS20965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000192|IPR012703|IPR015421|IPR015422|IPR015424|IPR024169	2-aminoethylphosphonate--pyruvate transaminase|Aminotransferase class V domain|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2|Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase	GO:0003824|GO:0019700|GO:0047304	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|MF_01376|PF00266|PIRSF000524|PTHR21152|PTHR21152:SF21|SSF53383|TIGR02326|TIGR03301
ALIDE_RS20970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR017664	2-aminoethylphosphonate ABC transport system, permease protein, putative|ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30193|PTHR30193:SF3|SSF161098|TIGR03262
ALIDE_RS20975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR008995|IPR017666|IPR017871|IPR027417	2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2|AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Molybdate/tungstate binding, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF150|SM00382|SSF50331|SSF52540|TIGR03265
ALIDE_RS20980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017663|IPR026045	ABC transport system, 1-aminoethylphosphonate-binding protein, putative|Ferric binding protein		G3DSA:3.40.190.10|PF13343|PIRSF002825|PTHR30006|PTHR30006:SF9|SSF53850|TIGR03261
ALIDE_RS20985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991|IPR017723	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Transcription regulator, 2-aminoethylphosphonate utilisation-associated|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|PTHR11751|SM00345|SM00895|SSF46785|SSF48008|TIGR03338
ALIDE_RS20990	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002591|IPR012710|IPR017849|IPR017850	Alkaline phosphatase-like, alpha/beta/alpha|Alkaline-phosphatase-like, core domain|Phosphonoacetate hydrolase|Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase	GO:0003824|GO:0008152|GO:0047400	G3DSA:3.40.720.10|PF01663|SSF53649|TIGR02335
ALIDE_RS20995	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR015590|IPR016160|IPR016161|IPR016162|IPR016163|IPR017656|IPR029510	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde dehydrogenase, cysteine active site|Aldehyde dehydrogenase, glutamic acid active site|Aldehyde/histidinol dehydrogenase|Putative phosphonoacetaldehyde dehydrogenase	GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PS00070|PS00687|PTHR11699|SSF53720|TIGR03250
ALIDE_RS21000	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR017670	Phosphonate degradation operon associated HDIG domain protein		PTHR40202|PTHR40202:SF1|SSF109604|TIGR03276
ALIDE_RS21005	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR017715|IPR023753	FAD dependent oxidoreductase|FAD/NAD(P)-binding domain|Putative aminophosphonate oxidoreductase	GO:0016491|GO:0055114	G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|PTHR13847|PTHR13847:SF208|SSF51905|TIGR03329
ALIDE_RS21010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000821|IPR001608|IPR009006|IPR011079|IPR020622|IPR029066	Alanine racemase|Alanine racemase, C-terminal|Alanine racemase, N-terminal|Alanine racemase, pyridoxal-phosphate attachment site|Alanine racemase/group IV decarboxylase, C-terminal|PLP-binding barrel	GO:0003824|GO:0006522|GO:0008784	G3DSA:2.40.37.10|G3DSA:3.20.20.10|MF_01201|PF00842|PF01168|PR00992|PS00395|PTHR30511|PTHR30511:SF0|SM01005|SSF50621|SSF51419|TIGR00492
ALIDE_RS21015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR023080|IPR023753	D-amino acid dehydrogenase DadA|FAD dependent oxidoreductase|FAD/NAD(P)-binding domain	GO:0008718|GO:0016491|GO:0019478|GO:0055114	G3DSA:3.30.9.10|G3DSA:3.50.50.60|MF_01202|PF01266|PTHR13847|PTHR13847:SF148|SSF51905|SSF54373
ALIDE_RS21020	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000485|IPR011008|IPR011991|IPR019885|IPR019887|IPR019888	AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator HTH, AsnC-type, conserved site|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0005622|GO:0006355|GO:0043565	G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|PS00519|PTHR30154|PTHR30154:SF0|SM00344|SSF46785|SSF54909
ALIDE_RS21025	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000835|IPR011991	MarR-type HTH domain|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|PF13463|PTHR39515|PTHR39515:SF1|SSF46785
ALIDE_RS21030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003593|IPR013765|IPR020584|IPR023400|IPR027417	AAA+ ATPase domain|DNA recombination and repair protein RecA|DNA recombination and repair protein RecA, C-terminal|DNA recombination/repair protein RecA, conserved site|P-loop containing nucleoside triphosphate hydrolase	GO:0003677|GO:0003697|GO:0005524|GO:0006259|GO:0006281|GO:0008094	G3DSA:3.30.250.10|G3DSA:3.40.50.300|MF_00268|PF00154|PR00142|PS00321|PTHR22942|PTHR22942:SF1|SM00382|SSF52540|SSF54752|TIGR02012
ALIDE_RS21035	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003783|IPR011991	Regulatory protein RecX|Winged helix-turn-helix DNA-binding domain	GO:0006282	G3DSA:1.10.10.10|MF_01114|PF02631|PTHR33602|PTHR33602:SF1
ALIDE_RS21040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012434	Protein of unknown function DUF1631		PF07793
ALIDE_RS21045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005665|IPR022645|IPR022646|IPR022813	Protein-export membrane protein SecD/SecF, archaeal and bacterial|Protein-export membrane protein SecD/SecF, bacterial|Protein-export membrane protein SecD/SecF/SecDF, conserved site|Protein-export membrane protein SecF, bacterial	GO:0006886|GO:0015450	G3DSA:1.20.1640.10|MF_01464_B|PF02355|PF07549|PR01755|PTHR30081|SSF82866|TIGR00916|TIGR00966
ALIDE_RS21050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005791|IPR022645|IPR022646|IPR022813|IPR027398	Protein translocase subunit SecD|Protein-export membrane protein SecD/SecF, archaeal and bacterial|Protein-export membrane protein SecD/SecF, bacterial|Protein-export membrane protein SecD/SecF/SecDF, conserved site|SecD export protein N-terminal TM domain	GO:0006886|GO:0015450	G3DSA:1.20.1640.10|MF_01463_B|PF02355|PF07549|PF13721|PTHR30081|PTHR30081:SF1|SSF82866|TIGR00916|TIGR01129
ALIDE_RS21055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003849	Preprotein translocase YajC		PF02699|PR01853|PTHR33909|PTHR33909:SF1|SM01323|TIGR00739
ALIDE_RS21060	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002869|IPR011766|IPR019752|IPR029061	Pyruvate-flavodoxin oxidoreductase, central domain|Pyruvate/ketoisovalerate oxidoreductase, catalytic domain|Thiamin diphosphate-binding fold|Thiamine pyrophosphate enzyme, C-terminal TPP-binding	GO:0003824|GO:0016491|GO:0016903|GO:0030976|GO:0055114	G3DSA:3.40.50.970|G3DSA:3.40.920.10|PF01558|PF02775|PTHR18968|PTHR18968:SF134|SSF52518|SSF53323
ALIDE_RS21065	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000485|IPR011008|IPR011991|IPR019885|IPR019887|IPR019888	AsnC-type HTH domain|Dimeric alpha-beta barrel|Transcription regulator AsnC-type|Transcription regulator AsnC/Lrp, ligand binding domain|Transcription regulator HTH, AsnC-type, conserved site|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0005622|GO:0006355|GO:0043565	G3DSA:1.10.10.10|G3DSA:3.30.70.920|PF01037|PF13412|PR00033|PS00519|PTHR30154|PTHR30154:SF28|SM00344|SSF46785|SSF54909
ALIDE_RS21070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010290|IPR020846	Major facilitator superfamily domain|Transmembrane secretion effector		G3DSA:1.20.1250.20|PF05977|PTHR23513|PTHR23513:SF7|SSF103473
ALIDE_RS21075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005300|IPR009009|IPR010611|IPR026044	3D domain|Lytic transglycosylase MltA|Membrane-bound lytic murein transglycosylase A|RlpA-like protein, double-psi beta-barrel domain	GO:0004553|GO:0009254|GO:0019867	G3DSA:2.40.40.10|PF03562|PF06725|PIRSF019422|PTHR30124|PTHR30124:SF0|SM00925|SSF50685
ALIDE_RS21080	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006664|IPR006665	OmpA-like domain|Outer membrane protein, bacterial	GO:0009279|GO:0016021	G3DSA:3.30.1330.60|PF00691|PF13488|PR01021|PR01023|PTHR30128|SSF103088
ALIDE_RS21085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000792|IPR001789|IPR011006|IPR011991|IPR016032	CheY-like superfamily|Signal transduction response regulator, C-terminal effector|Signal transduction response regulator, receiver domain|Transcription regulator LuxR, C-terminal|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00196|PR00038|PS00622|PTHR26402|PTHR26402:SF613|SM00421|SM00448|SSF46894|SSF52172
ALIDE_RS21090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR001610|IPR003594|IPR003661|IPR004358|IPR013767	Histidine kinase-like ATPase, C-terminal domain|PAC motif|PAS domain|PAS fold|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0006355|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00989|PF02518|PR00344|PTHR24423|SM00086|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229
ALIDE_RS21095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001110|IPR003010	Carbon-nitrogen hydrolase|Uncharacterised protein family UPF0012, conserved site	GO:0006807|GO:0016810	G3DSA:3.60.110.10|PF00795|PS01227|PTHR23088|PTHR23088:SF27|SSF56317
ALIDE_RS21100	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011836|IPR025263|IPR032712	AsmA-like, C-terminal|Conserved hypothetical protein CHP02099|Domain of unknown function DUF3971		PF13116|PF13502|PTHR38690|TIGR02099
ALIDE_RS21105	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005190|IPR013546|IPR023057	Glutamate-ammonia ligase adenylyltransferase, repeated domain|Glutamate-ammonia-ligase adenylyltransferase|PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase	GO:0008882|GO:0016779	G3DSA:3.30.460.10|MF_00802|PF03710|PF08335|PTHR30621|SSF81301|SSF81593
ALIDE_RS21110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006143|IPR032317	RND efflux pump, membrane fusion protein|RND efflux pump, membrane fusion protein, barrel-sandwich domain	GO:0016020|GO:0055085	G3DSA:2.40.50.100|PF16576|PTHR30469|PTHR30469:SF15|SSF111369|TIGR01730
ALIDE_RS21115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001036|IPR027463	Acriflavin resistance protein|Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains	GO:0005215|GO:0006810|GO:0016020	G3DSA:1.10.3850.10|G3DSA:1.20.1640.10|G3DSA:3.30.2090.10|G3DSA:3.30.70.1320|G3DSA:3.30.70.1430|PF00873|PR00702|PTHR32063|PTHR32063:SF20|SSF82693|SSF82714|SSF82866
ALIDE_RS21120	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004045|IPR010987|IPR012336	Glutathione S-transferase, C-terminal-like|Glutathione S-transferase, N-terminal|Thioredoxin-like fold	GO:0005515	G3DSA:1.20.1050.10|G3DSA:3.40.30.10|PF13410|PF13417|PTHR11260|PTHR11260:SF256|SSF47616|SSF52833
ALIDE_RS21125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000362|IPR004769|IPR008948|IPR013539|IPR020557|IPR022761|IPR024083	Adenylosuccinate lyase|Adenylosuccinate lyase PurB, C-terminal|Fumarase/histidase, N-terminal|Fumarate lyase family|Fumarate lyase, N-terminal|Fumarate lyase, conserved site|L-Aspartase-like	GO:0003824|GO:0004018|GO:0006188|GO:0009152	G3DSA:1.10.275.10|G3DSA:1.10.40.30|G3DSA:1.20.200.10|PF00206|PF08328|PR00149|PS00163|PTHR11444|PTHR11444:SF17|SSF48557|TIGR00928
ALIDE_RS21130	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009822|IPR011335	Restriction endonuclease  type II-like|YaeQ		G3DSA:3.10.640.10|PF07152|PIRSF011484|PTHR38784|PTHR38784:SF1|SM01322|SSF52980
ALIDE_RS21135	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007864|IPR018551	Domain of unknown function DUF2007|Urease accessory protein UreE, C-terminal domain	GO:0006461|GO:0016151|GO:0019627	G3DSA:3.30.70.790|PF09413
ALIDE_RS21140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010710|IPR022191	Protein of unknown function DUF1289|Protein of unknown function DUF3717		PF06945|PF12512|PTHR35175|PTHR35175:SF2
ALIDE_RS21145	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005496|IPR022301	Integral membrane protein TerC|Integral membrane protein YjbE	GO:0016021	PF03741|PTHR30060|TIGR03717
ALIDE_RS21150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold		G3DSA:3.40.50.620|SSF52402
ALIDE_RS21155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|PTHR30346:SF0|SSF46785|SSF53850
ALIDE_RS21160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PTHR30349|PTHR30349:SF1
ALIDE_RS21170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007165	Mycobacterial 4 TMS phage holin, superfamily IV		PF04020|PTHR37309|PTHR37309:SF1
ALIDE_RS21175	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001915|IPR011990|IPR030873	Beta-barrel assembly-enhancing protease|Peptidase M48|Tetratricopeptide-like helical domain	GO:0004222|GO:0005515|GO:0006508|GO:0008237|GO:0016020|GO:0061077	G3DSA:1.25.40.10|G3DSA:3.30.2010.10|MF_00997|PF01435|PTHR22726|PTHR22726:SF10
ALIDE_RS21180	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002820|IPR023045|IPR023046	Molybdenum cofactor biosynthesis C|Molybdenum cofactor biosynthesis C, bacterial-type|Molybdopterin cofactor biosynthesis C (MoaC) domain	GO:0006777	G3DSA:3.30.70.640|MF_01224_B|PF01967|PTHR22960|SSF55040|TIGR00581
ALIDE_RS21190	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000396|IPR001279	Cyclic-AMP phosphodiesterase, class-II|Metallo-beta-lactamase	GO:0004115|GO:0006198	G3DSA:3.60.15.10|PF12706|PR00388|PTHR12553|SM00849|SSF56281
ALIDE_RS21195	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000253|IPR008984	Forkhead-associated (FHA) domain|SMAD/FHA domain	GO:0005515	G3DSA:2.60.200.20|PF00498|PTHR15715|SM00240|SSF49879
ALIDE_RS21200	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001932|IPR015655	PPM-type phosphatase domain|Protein phosphatase 2C family	GO:0003824|GO:0004722|GO:0006470	G3DSA:3.60.40.10|PF13672|PTHR13832|PTHR13832:SF278|SM00331|SM00332|SSF81606
ALIDE_RS21205	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005496|IPR022301	Integral membrane protein TerC|Integral membrane protein YjbE	GO:0016021	PF03741|PTHR30060|TIGR03717
ALIDE_RS21210	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003781|IPR005810|IPR005811|IPR016040|IPR016102|IPR017440	ATP-citrate lyase/succinyl-CoA ligase|ATP-citrate lyase/succinyl-CoA ligase, active site|CoA-binding|NAD(P)-binding domain|Succinyl-CoA ligase, alpha subunit|Succinyl-CoA synthetase-like	GO:0003824|GO:0008152|GO:0048037	G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF00549|PF02629|PIRSF001553|PR01798|PS00399|PS01216|PTHR11117|SM00881|SSF51735|SSF52210|TIGR01019
ALIDE_RS21215	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005809|IPR005811|IPR013650|IPR013815|IPR013816|IPR016102|IPR017866	ATP-citrate lyase/succinyl-CoA ligase|ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|ATP-grasp fold, succinyl-CoA synthetase-type|Succinyl-CoA synthetase, beta subunit|Succinyl-CoA synthetase, beta subunit, conserved site|Succinyl-CoA synthetase-like	GO:0003824|GO:0005524|GO:0008152	G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.261|MF_00558|PF00549|PF08442|PIRSF001554|PS01217|PTHR11815|PTHR11815:SF1|SSF52210|SSF56059|TIGR01016
ALIDE_RS21220	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000534|IPR010136|IPR016040|IPR023013	N-acetyl-gamma-glutamyl-phosphate reductase, active site|N-acetyl-gamma-glutamyl-phosphate reductase, type 2|NAD(P)-binding domain|Semialdehyde dehydrogenase, NAD-binding	GO:0003942|GO:0005737|GO:0006526|GO:0016620|GO:0051287|GO:0055114	G3DSA:3.30.360.10|G3DSA:3.40.50.720|MF_01110|PF01118|PS01224|PTHR32338|PTHR32338:SF9|SM00859|SSF51735|SSF55347|TIGR01851
ALIDE_RS21225	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003488|IPR011991	DNA recombination-mediator protein A|Winged helix-turn-helix DNA-binding domain	GO:0009294	G3DSA:1.10.10.10|G3DSA:3.40.50.450|PF02481|PTHR32039|PTHR32039:SF8|SSF102405|TIGR00732
ALIDE_RS21230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018392	LysM domain		G3DSA:3.10.350.10|PF01476|PTHR34700|PTHR34700:SF2|SM00257|SSF54106
ALIDE_RS21235	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000181|IPR023635	Formylmethionine deformylase|Peptide deformylase	GO:0005506|GO:0042586	G3DSA:3.90.45.10|MF_00163|PF01327|PIRSF004749|PR01576|PTHR10458|PTHR10458:SF10|SSF56420|TIGR00079
ALIDE_RS21245	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001555|IPR002376|IPR005793|IPR005794|IPR011034	Formyl transferase, C-terminal|Formyl transferase, C-terminal-like|Formyl transferase, N-terminal|Methionyl-tRNA formyltransferase|Phosphoribosylglycinamide formyltransferase, active site	GO:0003824|GO:0004479|GO:0009058|GO:0016742|GO:0071951	G3DSA:3.10.25.10|G3DSA:3.40.50.170|MF_00182|PF00551|PF02911|PS00373|PTHR11138|SSF50486|SSF53328
ALIDE_RS21250	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011606	Branched-chain amino acid transport, permease		PF03591|PTHR34979
ALIDE_RS21255	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR008407	Branched-chain amino acid transport, AzlD		PF05437
ALIDE_RS21260	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001576|IPR015824|IPR015901|IPR015911	Phosphoglycerate kinase|Phosphoglycerate kinase, C-terminal|Phosphoglycerate kinase, N-terminal|Phosphoglycerate kinase, conserved site	GO:0004618|GO:0006096	G3DSA:3.40.50.1260|G3DSA:3.40.50.1270|MF_00145|PF00162|PIRSF000724|PR00477|PS00111|PTHR11406|SSF53748
ALIDE_RS21270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014549	Flagellar protein FlgO		PIRSF028688
ALIDE_RS21275	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000620	EamA domain	GO:0016020|GO:0016021	PF00892|PTHR32322|PTHR32322:SF9|SSF103481
ALIDE_RS21280	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001754|IPR011060|IPR011995|IPR013785|IPR018089	Aldolase-type TIM barrel|Orotidine 5'-phosphate decarboxylase domain|Orotidine 5'-phosphate decarboxylase, active site|Orotidine 5'-phosphate decarboxylase, type 2|Ribulose-phosphate binding barrel	GO:0003824|GO:0004590|GO:0006207|GO:0006221|GO:0008152	G3DSA:3.20.20.70|MF_01215|PF00215|PS00156|PTHR19278|PTHR19278:SF1|SM00934|SSF51366|TIGR02127
ALIDE_RS21285	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30126|PTHR30126:SF2|SSF46785|SSF53850
ALIDE_RS21290	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS21295	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007036	Succinylglutamate desuccinylase/aspartoacylase	GO:0008152|GO:0016788	G3DSA:3.40.630.10|PF04952|SSF53187
ALIDE_RS21300	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003660|IPR004089|IPR013587	HAMP domain|Methyl-accepting chemotaxis protein (MCP) signalling domain|Nitrate/nitrite sensing protein	GO:0004871|GO:0007165|GO:0016020|GO:0016021	G3DSA:1.10.287.950|PF00015|PF00672|PF08376|PTHR32089|PTHR32089:SF63|SM00283|SM00304|SSF58104
ALIDE_RS21305	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR004602|IPR013815|IPR017871|IPR027417	ABC transporter, conserved site|ABC transporter-like|ATP-grasp fold, subdomain 1|P-loop containing nucleoside triphosphate hydrolase|UvrABC system subunit A	GO:0003824|GO:0005524|GO:0006289|GO:0009380|GO:0009381|GO:0016887	G3DSA:1.10.8.280|G3DSA:1.20.1580.10|G3DSA:3.30.1490.20|G3DSA:3.40.50.300|MF_00205|PF00005|PS00211|PTHR32282|PTHR32282:SF2|SSF52540|TIGR00630
ALIDE_RS21310	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005829|IPR011701|IPR020846	Major facilitator superfamily|Major facilitator superfamily domain|Sugar transporter, conserved site	GO:0005215|GO:0016021|GO:0055085	G3DSA:1.20.1250.20|PF07690|PS00216|PTHR23504|PTHR23504:SF37|SSF103473
ALIDE_RS21315	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000424|IPR011344|IPR012340	Nucleic acid-binding, OB-fold|Primosome PriB/single-strand DNA-binding|Single-stranded DNA-binding protein	GO:0003697|GO:0006260	G3DSA:2.40.50.140|MF_00984|PF00436|PTHR10302|PTHR10302:SF0|SSF50249|TIGR00621
ALIDE_RS21320	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|SM00346|SSF46785|SSF55781
ALIDE_RS21325	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF591|SSF89796
ALIDE_RS21330	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS21335	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003736|IPR006683|IPR029069	HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR12418|SSF54637|TIGR00369
ALIDE_RS21340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS21345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF13561|PR00080|PR00081|PS00061|PTHR24322|SM00822|SSF51735
ALIDE_RS21350	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029069	HotDog domain		G3DSA:3.10.129.10|PF13452|PTHR13078|SSF54637
ALIDE_RS21355	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PIRSF016578|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS21360	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS21365	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001753|IPR010198|IPR014748|IPR017623|IPR018376|IPR029045	1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB|2-ketocyclohexanecarboxyl-CoA hydrolase|ClpP/crotonase-like domain|Crontonase, C-terminal|Crotonase superfamily|Enoyl-CoA hydratase/isomerase, conserved site	GO:0003824|GO:0008152|GO:0008935|GO:0009234	G3DSA:1.10.12.10|G3DSA:3.90.226.10|MF_01934|PF00378|PS00166|PTHR11941|PTHR11941:SF20|SSF52096|TIGR03210
ALIDE_RS21370	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003804	L-lactate permease	GO:0005887|GO:0015129|GO:0015727	PF02652|PTHR30003|PTHR30003:SF0|TIGR00795
ALIDE_RS21375	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004506|IPR014729|IPR023382	Adenine nucleotide alpha hydrolase-like domains|Rossmann-like alpha/beta/alpha sandwich fold|tRNA-specific 2-thiouridylase	GO:0008033|GO:0016740|GO:0016783	G3DSA:2.30.30.280|G3DSA:2.40.30.10|G3DSA:3.40.50.620|MF_00144|PF03054|PTHR11933|PTHR11933:SF10|SSF52402|TIGR00420
ALIDE_RS21380	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30419|PTHR30419:SF0|SSF46785|SSF53850
ALIDE_RS21385	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007400	PrpF protein		G3DSA:3.10.310.10|PF04303|PTHR30349|PTHR30349:SF39|SSF54506
ALIDE_RS21390	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS21395	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR023614	Porin domain		G3DSA:2.40.160.10|PF13609|SSF56935
ALIDE_RS21400	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30293|PTHR30293:SF0|SSF46785|SSF53850
ALIDE_RS21405	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003953|IPR012831|IPR023753|IPR027477	FAD-dependent oxidoreductase 2, FAD binding domain|FAD/NAD(P)-binding domain|Precorrin 3B synthase CobZ|Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain	GO:0016491|GO:0055114	G3DSA:3.50.50.60|G3DSA:3.90.700.10|PF00890|PTHR11632|PTHR11632:SF47|SSF51905|SSF56425|TIGR02485
ALIDE_RS21410	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR012830|IPR023234	Citrate utilization protein B|NarG-like domain		G3DSA:3.30.70.20|SSF103501|SSF54862|TIGR02484
ALIDE_RS21415	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS21420	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR002078|IPR002197|IPR003593|IPR009057|IPR025662|IPR025943|IPR027417	AAA+ ATPase domain|DNA binding HTH domain,  Fis-type|Homeodomain-like|P-loop containing nucleoside triphosphate hydrolase|PAS domain|RNA polymerase sigma factor 54 interaction domain|Sigma-54 interaction domain, ATP-binding site 1|Sigma-54 interaction domain, ATP-binding site 2	GO:0003677|GO:0005524|GO:0006355|GO:0008134|GO:0043565	G3DSA:1.10.10.60|G3DSA:1.10.8.60|G3DSA:3.30.450.20|G3DSA:3.40.50.300|PF00158|PF02954|PS00675|PS00676|PTHR32071|SM00382|SSF46689|SSF52540|SSF55785
ALIDE_RS21425	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000022|IPR029045	Carboxyl transferase|ClpP/crotonase-like domain		G3DSA:3.90.226.10|PF01039|PTHR22855|PTHR22855:SF40|SSF52096
ALIDE_RS21430	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS21435	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003781|IPR016040|IPR016102|IPR032875	CoA-binding|NAD(P)-binding domain|Succinyl-CoA synthetase-like|Succinyl-CoA synthetase-like, flavodoxin domain	GO:0048037	G3DSA:3.40.50.261|G3DSA:3.40.50.720|PF13380|PF13549|PF13607|PTHR33303|PTHR33303:SF3|SM00881|SSF51735|SSF52210|SSF56059
ALIDE_RS21440	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005479|IPR005481|IPR005482|IPR011054|IPR013815|IPR013816|IPR016185	ATP-grasp fold, subdomain 1|ATP-grasp fold, subdomain 2|Biotin carboxylase, C-terminal|Biotin carboxylase-like, N-terminal domain|Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain|Pre-ATP-grasp domain|Rudiment single hybrid motif	GO:0003824|GO:0005524	G3DSA:3.30.1490.20|G3DSA:3.30.470.20|G3DSA:3.40.50.20|PF00289|PF02785|PF02786|PS00866|PS00867|PTHR18866|SM00878|SSF51246|SSF52440|SSF56059
ALIDE_RS21445	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000089|IPR011053	Biotin/lipoyl attachment|Single hybrid motif		G3DSA:2.40.50.100|PF00364|SSF51230
ALIDE_RS21450	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003736|IPR006683|IPR029069	HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR12418|SSF54637|TIGR00369
ALIDE_RS21455	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000086|IPR015797	NUDIX hydrolase domain|NUDIX hydrolase domain-like	GO:0016787	G3DSA:3.90.79.10|PF00293|PTHR22769|SSF55811
ALIDE_RS21465	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000531|IPR010100|IPR012910	TonB-dependent copper receptor|TonB-dependent receptor, beta-barrel|TonB-dependent receptor, plug domain	GO:0004872|GO:0006810|GO:0016020	G3DSA:2.170.130.10|G3DSA:2.40.170.20|PF00593|PF07715|PTHR32552|PTHR32552:SF12|SSF56935|TIGR01778
ALIDE_RS21470	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003736|IPR006683|IPR029069	HotDog domain|Phenylacetic acid degradation-related domain|Thioesterase domain		G3DSA:3.10.129.10|PF03061|PTHR12418|SSF54637|TIGR00369
ALIDE_RS21475	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|SM00346|SSF46785|SSF55781
ALIDE_RS21480	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF1|SSF53850
ALIDE_RS21485	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS21490	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR029069	HotDog domain		G3DSA:3.10.129.10|PF13452|SSF54637
ALIDE_RS21495	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000873|IPR025110	AMP-binding enzyme C-terminal domain|AMP-dependent synthetase/ligase	GO:0003824|GO:0008152	G3DSA:2.30.38.10|G3DSA:3.30.300.30|G3DSA:3.40.50.980|PF00501|PF13193|PTHR24095|SSF56801
ALIDE_RS21500	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001783|IPR017938|IPR023366|IPR026017	ATP synthase subunit alpha-like domain|Lumazine-binding domain|Lumazine-binding protein|Riboflavin synthase-like beta-barrel	GO:0016491|GO:0055114	G3DSA:2.40.30.20|PF00677|PIRSF000498|PTHR21098|PTHR21098:SF4|SSF63380|TIGR00187
ALIDE_RS21505	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001123	Lysine-type exporter protein (LYSE/YGGA)	GO:0006865|GO:0016020	PF01810|PIRSF006324|PTHR30086|PTHR30086:SF14
ALIDE_RS21510	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003594|IPR004358	Histidine kinase-like ATPase, C-terminal domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0016310|GO:0016772	G3DSA:3.30.565.10|PF02518|PR00344|PTHR24423|PTHR24423:SF496|SM00387|SSF55874
ALIDE_RS21515	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001789|IPR001867|IPR011006|IPR011991	CheY-like superfamily|OmpR/PhoB-type DNA-binding domain|Signal transduction response regulator, receiver domain|Winged helix-turn-helix DNA-binding domain	GO:0000160|GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.50.2300|PF00072|PF00486|PTHR26402|PTHR26402:SF316|SM00448|SM00862|SSF52172
ALIDE_RS21520	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025711	PepSY domain		PF03413
ALIDE_RS21525	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025711	PepSY domain		PF13670
ALIDE_RS21530	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001221|IPR013112|IPR013130|IPR017938	FAD-binding 8|Ferric reductase transmembrane component-like domain|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel	GO:0016491|GO:0055114	G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF01794|PF08022|PR00410|PTHR11972|PTHR11972:SF23|SSF52343|SSF63380
ALIDE_RS21535	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011577|IPR016174	Cytochrome b561, bacterial/Ni-hydrogenase|Di-haem cytochrome, transmembrane	GO:0009055|GO:0016020|GO:0016021|GO:0022904	PF01292|PTHR30529|PTHR30529:SF3|SSF81342
ALIDE_RS21540	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025711	PepSY domain		PF13670
ALIDE_RS21545	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR014469	Protein of unknown function DUF2271		PF10029
ALIDE_RS21550	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001433|IPR001709|IPR005625|IPR008254|IPR008333|IPR017938|IPR029039	Flavodoxin/nitric oxide synthase|Flavoprotein pyridine nucleotide cytochrome reductase|Flavoprotein-like domain|Oxidoreductase FAD/NAD(P)-binding|Oxidoreductase, FAD-binding domain|PepSY-associated TM protein|Riboflavin synthase-like beta-barrel	GO:0010181|GO:0016491|GO:0055114	G3DSA:2.40.30.10|G3DSA:3.40.50.360|G3DSA:3.40.50.80|PF00175|PF00258|PF00970|PF03929|PR00371|PTHR19384|PTHR19384:SF76|SSF52218|SSF52343|SSF63380
ALIDE_RS21555	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003374|IPR024932	ApbE-like domain|Flavin transferase ApbE	GO:0017013	PF02424|PIRSF006268|PTHR30040|PTHR30040:SF3|SSF143631
ALIDE_RS21570	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001757|IPR004014|IPR006068|IPR008250|IPR018303|IPR023214|IPR023298|IPR023299	Cation-transporting P-type ATPase, C-terminal|Cation-transporting P-type ATPase, N-terminal|HAD-like domain|P-type ATPase|P-type ATPase,  transmembrane domain|P-type ATPase, A  domain|P-type ATPase, cytoplasmic domain N|P-type ATPase, phosphorylation site	GO:0000166|GO:0016021|GO:0046872	G3DSA:1.20.1110.10|G3DSA:2.70.150.10|G3DSA:3.40.1110.10|G3DSA:3.40.50.1000|PF00122|PF00689|PF00690|PF00702|PR00119|PR00120|PS00154|PTHR24093|PTHR24093:SF268|SM00831|SSF56784|SSF81653|SSF81665|TIGR01494
ALIDE_RS21580	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001295|IPR004136|IPR013785	Aldolase-type TIM barrel|Dihydroorotate dehydrogenase, conserved site|Nitronate monooxygenase	GO:0003824|GO:0004152|GO:0006207|GO:0018580|GO:0055114	G3DSA:3.20.20.70|PF03060|PS00912|PTHR10982|PTHR10982:SF10|SSF51412
ALIDE_RS21585	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF16|SSF53850
ALIDE_RS21590	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PS00073|PTHR10909|SSF47203|SSF56645
ALIDE_RS21595	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF4|SM00346|SSF46785|SSF55781
ALIDE_RS21600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS21605	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002085|IPR011032|IPR013149|IPR013154|IPR014188|IPR016040|IPR020843	Acrylyl-CoA reductase AcuI|Alcohol dehydrogenase superfamily, zinc-type|Alcohol dehydrogenase, C-terminal|Alcohol dehydrogenase, N-terminal|GroES-like|NAD(P)-binding domain|Polyketide synthase, enoylreductase domain	GO:0008270|GO:0016491|GO:0055114	G3DSA:3.40.50.720|G3DSA:3.90.180.10|PF00107|PF08240|PTHR11695|PTHR11695:SF13|SM00829|SSF50129|SSF51735|TIGR02823
ALIDE_RS21610	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006089|IPR006091|IPR009075|IPR009100|IPR013786	Acyl-CoA dehydrogenase, conserved site|Acyl-CoA dehydrogenase/oxidase C-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain|Acyl-CoA oxidase/dehydrogenase, central domain	GO:0003995|GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|G3DSA:1.20.140.10|G3DSA:2.40.110.10|PF00441|PF02770|PF02771|PS00072|PS00073|PTHR10909|PTHR10909:SF305|SSF47203|SSF56645
ALIDE_RS21615	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	G3DSA:3.40.190.10|PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS21620	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005471|IPR011991|IPR014757|IPR029016	GAF domain-like|Transcription regulator IclR, C-terminal|Transcription regulator IclR, N-terminal|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.30.450.40|PF01614|PF09339|PTHR30136|PTHR30136:SF4|SM00346|SSF46785|SSF55781
ALIDE_RS21625	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|PTHR24023|PTHR24023:SF593|SSF89796
ALIDE_RS21630	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PR00039|PTHR30346|SSF46785|SSF53850
ALIDE_RS21635	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005064	Bordetella uptake gene	GO:0030288	PF03401|PIRSF017082|PTHR30349|PTHR30349:SF32|SSF53850
ALIDE_RS21640	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000101|IPR029055	Gamma-glutamyltranspeptidase|Nucleophile aminohydrolases, N-terminal	GO:0003840|GO:0006749	PF01019|PR01210|PTHR11686|SSF56235|TIGR00066
ALIDE_RS21650	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002937|IPR023753	Amine oxidase|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.50.50.60|PF01593|PTHR10742|PTHR10742:SF224|SSF51905
ALIDE_RS21655	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001045|IPR029063|IPR030373	Polyamine biosynthesis domain, conserved site|S-adenosyl-L-methionine-dependent methyltransferase|Spermidine/spermine synthases	GO:0003824	G3DSA:3.40.50.150|MF_00198|PF01564|PS01330|PTHR11558|PTHR11558:SF26|SSF53335
ALIDE_RS21660	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007140	Protein of unknown function DUF350		PF03994
ALIDE_RS21665	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR025235	Domain of unknown function DUF4178		PF13785
ALIDE_RS21670	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001107|IPR018649	Band 7 domain|SHOCT domain		PF09851|PF13421|PTHR37826|PTHR37826:SF2|SSF117892
ALIDE_RS21675	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018638	Domain of unknown function DUF2061, membrane		PF09834
ALIDE_RS21680	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001444|IPR010930	Flagellar basal body rod protein, N-terminal|Flagellar basal-body/hook protein, C-terminal domain	GO:0071973	PF00460|PF06429
ALIDE_RS21685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30126|PTHR30126:SF16|SSF46785|SSF53850
ALIDE_RS21690	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005814|IPR015421|IPR015422|IPR015424	Aminotransferase class-III|Pyridoxal phosphate-dependent transferase|Pyridoxal phosphate-dependent transferase, major region, subdomain 1|Pyridoxal phosphate-dependent transferase, major region, subdomain 2	GO:0003824|GO:0008483|GO:0030170	G3DSA:3.40.640.10|G3DSA:3.90.1150.10|PF00202|PS00600|PTHR11986|PTHR11986:SF80|SSF53383
ALIDE_RS21695	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010061|IPR015590|IPR016161|IPR016162|IPR016163	Aldehyde dehydrogenase N-terminal domain|Aldehyde dehydrogenase domain|Aldehyde dehydrogenase, C-terminal|Aldehyde/histidinol dehydrogenase|Methylmalonate-semialdehyde dehydrogenase	GO:0004491|GO:0008152|GO:0016491|GO:0016620|GO:0055114	G3DSA:3.40.309.10|G3DSA:3.40.605.10|PF00171|PTHR11699|PTHR11699:SF188|SSF53720|TIGR01722
ALIDE_RS21700	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR007894|IPR029787	GGDEF domain|MASE2|Nucleotide cyclase		G3DSA:3.30.70.270|PF00990|PF05230|PTHR10799|PTHR10799:SF750|SM00267|SSF55073|TIGR00254
ALIDE_RS21705	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000524|IPR008920|IPR011711|IPR011991	GntR, C-terminal|Transcription regulator FadR/GntR, C-terminal|Transcription regulator HTH, GntR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:1.20.120.530|PF00392|PF07729|PR00035|PTHR11751|SM00345|SM00895|SSF46785|SSF48008
ALIDE_RS21710	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR028081|IPR028082	Leucine-binding protein domain|Periplasmic binding protein-like I		G3DSA:3.40.50.2300|PF13458|PTHR30483|SSF53822
ALIDE_RS21715	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR11795|PTHR11795:SF379
ALIDE_RS21720	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001851	ABC transporter, permease	GO:0005215|GO:0006810|GO:0016020	PF02653|PTHR30482
ALIDE_RS21725	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417|IPR032823	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Branched-chain amino acid ATP-binding cassette transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PF12399|PS00211|PTHR24220|PTHR24220:SF358|SM00382|SSF52540
ALIDE_RS21730	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|P-loop containing nucleoside triphosphate hydrolase	GO:0005524|GO:0016887	G3DSA:3.40.50.300|PF00005|PS00211|PTHR24220|PTHR24220:SF568|SM00382|SSF52540
ALIDE_RS21735	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002933|IPR010158|IPR011650	Amidase, hydantoinase/carbamoylase|Peptidase M20|Peptidase M20, dimerisation domain	GO:0008152|GO:0016787|GO:0016813	G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PIRSF001235|PTHR32494|PTHR32494:SF6|SSF53187|SSF55031|TIGR01879
ALIDE_RS21740	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009197|IPR010799|IPR015995	Microcystin LR degradation protein MlrC|Microcystin LR degradation protein MlrC, C-terminal|Microcystin LR degradation protein MlrC, N-terminal		PF07171|PF07364|PIRSF012702
ALIDE_RS21745	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002505|IPR012188|IPR012301|IPR012302|IPR016040|IPR032683	Malate dehydrogenase enzyme, N-terminal|Malic enzyme, N-terminal domain|Malic enzyme, NAD-binding|Malic enzyme, phosphate acetyl/butaryl transferase|NAD(P)-binding domain|Phosphate acetyl/butaryl transferase	GO:0004471|GO:0004473|GO:0005829|GO:0006108|GO:0008152|GO:0016616|GO:0016746|GO:0030145|GO:0046872|GO:0051287|GO:0055114	G3DSA:3.40.50.10380|G3DSA:3.40.50.10750|G3DSA:3.40.50.720|PF00390|PF01515|PF03949|PF12434|PIRSF036684|PTHR23406|SM00919|SM01274|SSF51735|SSF53223|SSF53659
ALIDE_RS21750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000026|IPR016191	Guanine-specific ribonuclease N1/T1/U2|Ribonuclease/ribotoxin	GO:0003723|GO:0004521|GO:0004540	G3DSA:3.10.450.30|PF00545|SSF53933
ALIDE_RS21755	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000468	Barstar (barnase inhibitor)		G3DSA:3.30.370.10|PF01337|SSF52038
ALIDE_RS21760	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001737|IPR011530|IPR020596|IPR020598|IPR023165|IPR029063	Ribosomal RNA adenine dimethylase|Ribosomal RNA adenine methylase transferase, N-terminal|Ribosomal RNA adenine methylase transferase, conserved site|Ribosomal RNA adenine methyltransferase KsgA/Erm|S-adenosyl-L-methionine-dependent methyltransferase|rRNA adenine dimethylase-like	GO:0000154|GO:0000179|GO:0006364|GO:0008649	G3DSA:1.10.8.100|G3DSA:3.40.50.150|MF_00607|PF00398|PS01131|PTHR11727|SM00650|SSF53335|TIGR00755
ALIDE_RS21765	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000297|IPR015391|IPR023034|IPR023058|IPR027304	Peptidyl-prolyl cis-trans isomerase, PpiC-type|Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site|Peptidyl-prolyl isomerase SurA|SurA N-terminal|Trigger factor/SurA domain	GO:0003755|GO:0006457|GO:0016853|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274	G3DSA:3.10.50.40|MF_01183|PF00639|PF09312|PS01096|PTHR10657|PTHR10657:SF16|SSF109998|SSF54534
ALIDE_RS21770	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007543|IPR020889	LPS-assembly protein LptD|Organic solvent tolerance protein, C-terminal	GO:0009279|GO:0010033|GO:0015920|GO:0019867|GO:0043165|GO:0061024	G3DSA:2.60.450.10|MF_01411|PF04453|PTHR30189
ALIDE_RS21775	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002575|IPR011009	Aminoglycoside phosphotransferase|Protein kinase-like domain		G3DSA:3.30.200.20|G3DSA:3.90.1200.10|PF01636|PTHR33540|PTHR33540:SF1|SSF56112
ALIDE_RS21780	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006700|IPR015947|IPR029026|IPR029028	Alpha/beta knot methyltransferases|PUA-like domain|Ribosomal RNA small subunit methyltransferase E|tRNA (guanine-N1-)-methyltransferase, N-terminal	GO:0006364|GO:0008168	G3DSA:2.40.240.20|G3DSA:3.40.1280.10|PF04452|PIRSF015601|PTHR30027|PTHR30027:SF3|SSF75217|SSF88697|TIGR00046
ALIDE_RS21795	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR027417	P-loop containing nucleoside triphosphate hydrolase		G3DSA:3.40.1140.10|G3DSA:3.40.50.300|PF13555|SSF52540
ALIDE_RS21800	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002933|IPR011650	Peptidase M20|Peptidase M20, dimerisation domain	GO:0008152|GO:0016787	G3DSA:3.30.70.360|G3DSA:3.40.630.10|PF01546|PF07687|PTHR11014|PTHR11014:SF88|SSF53187
ALIDE_RS21805	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000160|IPR029787	GGDEF domain|Nucleotide cyclase		G3DSA:3.30.70.270|PF00990|PTHR10799|PTHR10799:SF750|SM00267|SSF55073|TIGR00254
ALIDE_RS21815	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR018874	Bacteriophage Mx8, p63, C-terminal		PF10546
ALIDE_RS21820	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010743|IPR029063	Methionine biosynthesis MetW|S-adenosyl-L-methionine-dependent methyltransferase		G3DSA:3.40.50.150|PF07021|PTHR10108|PTHR10108:SF831|SSF53335|TIGR02081
ALIDE_RS21825	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000073|IPR008220|IPR029058	Alpha/Beta hydrolase fold|Alpha/beta hydrolase fold-1|Homoserine acetyltransferase	GO:0004414|GO:0005737|GO:0009086	G3DSA:3.40.50.1820|MF_00296|PF00561|PIRSF000443|PTHR32268|PTHR32268:SF11|SSF53474|TIGR01392
ALIDE_RS21830	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001727	Uncharacterised protein family UPF0016	GO:0016020	PF01169|PTHR12608
ALIDE_RS21835	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000504|IPR012677	Nucleotide-binding alpha-beta plait domain|RNA recognition motif domain	GO:0000166|GO:0003676	G3DSA:3.30.70.330|PF00076|PTHR24012|SM00360|SSF54928
ALIDE_RS21840	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000504|IPR012677	Nucleotide-binding alpha-beta plait domain|RNA recognition motif domain	GO:0000166|GO:0003676	G3DSA:3.30.70.330|PF00076|PTHR24012|SM00360|SSF54928
ALIDE_RS21845	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002347|IPR016040|IPR020904	NAD(P)-binding domain|Short-chain dehydrogenase/reductase SDR|Short-chain dehydrogenase/reductase, conserved site	GO:0016491	G3DSA:3.40.50.720|PF00106|PR00080|PR00081|PS00061|PTHR24322|PTHR24322:SF631|SM00822|SSF51735
ALIDE_RS21850	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010664|IPR026265	Lipopolysaccharide assembly, LptC-related|Lipopolysaccharide export system protein LptC	GO:0005887|GO:0015221|GO:0015920	PF06835|TIGR04409
ALIDE_RS21855	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010023|IPR023214	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase|HAD-like domain	GO:0019143	G3DSA:3.40.50.1000|PF08282|PIRSF006118|PTHR21485|SSF56784|TIGR01670
ALIDE_RS21860	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000644|IPR001347|IPR004800	CBS domain|Phosphosugar isomerase, KdsD/KpsF-type|Sugar isomerase (SIS)	GO:0005975|GO:0016853|GO:0030246	G3DSA:3.10.580.10|G3DSA:3.40.50.10490|PF00571|PF01380|PIRSF004692|PTHR38418|PTHR38418:SF1|SM00116|SSF53697|TIGR00393
ALIDE_RS21865	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003148|IPR004771|IPR006037|IPR006153|IPR016040	Cation/H+ exchanger|K+/H+ exchanger|NAD(P)-binding domain|Regulator of K+ conductance, C-terminal|Regulator of K+ conductance, N-terminal	GO:0006812|GO:0006813|GO:0008324|GO:0015299|GO:0016021|GO:0055085	G3DSA:3.30.70.1450|G3DSA:3.40.50.720|PF00999|PF02080|PF02254|PTHR16254|PTHR16254:SF6|SSF116726|SSF51735|TIGR00932
ALIDE_RS21870	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000836|IPR005764|IPR029057	Adenine phosphoribosyl transferase|Phosphoribosyltransferase domain|Phosphoribosyltransferase-like	GO:0003999|GO:0005737|GO:0006168|GO:0009116	G3DSA:3.40.50.2020|MF_00004|PF00156|PTHR32315|SSF53271|TIGR01090
ALIDE_RS21880	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000595|IPR014710|IPR018490	Cyclic nucleotide-binding domain|Cyclic nucleotide-binding-like|RmlC-like jelly roll fold		G3DSA:2.60.120.10|PF00027|PTHR24567|PTHR24567:SF30|SM00100|SSF51206
ALIDE_RS21885	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004520|IPR005225|IPR006073|IPR018948|IPR025867|IPR027266|IPR027368|IPR027417	GTP binding domain|GTP-binding protein TrmE, N-terminal|GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1|MnmE, helical domain|P-loop containing nucleoside triphosphate hydrolase|Small GTP-binding protein domain|tRNA modification GTPase MnmE|tRNA modification GTPase MnmE domain 2	GO:0003924|GO:0005515|GO:0005525|GO:0005622|GO:0006400	G3DSA:1.20.120.430|G3DSA:3.30.1360.120|G3DSA:3.40.50.300|MF_00379|PF01926|PF10396|PF12631|PR00326|PTHR11649|PTHR11649:SF56|SSF116878|SSF52540|TIGR00231|TIGR00450
ALIDE_RS21890	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001638	Solute-binding protein  family 3/N-terminal domain of MltF		G3DSA:3.40.190.10|PF00497|PTHR30085|PTHR30085:SF2|SM00062|SSF53850
ALIDE_RS21895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006076|IPR023753	FAD dependent oxidoreductase|FAD/NAD(P)-binding domain	GO:0016491|GO:0055114	G3DSA:3.30.9.10|G3DSA:3.50.50.60|PF01266|PTHR13847|PTHR13847:SF148|SSF51905|SSF54373
ALIDE_RS21900	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR005119|IPR011991	LysR, substrate-binding|Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PF03466|PTHR30427|PTHR30427:SF1|SSF46785|SSF53850
ALIDE_RS21905	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001920|IPR004380|IPR015942|IPR018187	Asp/Glu racemase|Asp/Glu racemase, active site 1|Asp/Glu/hydantoin racemase|Aspartate racemase	GO:0006520|GO:0006807|GO:0008152|GO:0016855|GO:0036361	G3DSA:3.40.50.1860|PF01177|PS00923|PTHR21198|PTHR21198:SF6|SSF53681|TIGR00035
ALIDE_RS21910	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007035|IPR027476	D-aminopeptidase, N-terminal|Peptidase M55, D-aminopeptidase		G3DSA:3.40.50.10780|PF04951|PIRSF015853|SSF63992
ALIDE_RS21915	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR005321|IPR016117	ArgJ-like domain|Peptidase S58, DmpA		G3DSA:3.60.70.12|PF03576|PTHR36512|PTHR36512:SF1|SSF56266
ALIDE_RS21920	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515|IPR025966	ABC transporter type 1, transmembrane domain MetI-like|Oligopeptide transport permease C-like, N-terminal domain	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PF12911|PTHR30465|PTHR30465:SF57|SSF161098
ALIDE_RS21925	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000515	ABC transporter type 1, transmembrane domain MetI-like	GO:0006810|GO:0016020	G3DSA:1.10.3720.10|PF00528|PTHR30465|PTHR30465:SF59|SSF161098
ALIDE_RS21930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000914|IPR030678	Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain	GO:0043190|GO:0055085	G3DSA:3.10.105.10|G3DSA:3.40.190.10|PF00496|PIRSF002741|PTHR30290|PTHR30290:SF32|SSF53850
ALIDE_RS21935	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003439|IPR003593|IPR013563|IPR017871|IPR027417	AAA+ ATPase domain|ABC transporter, conserved site|ABC transporter-like|Oligopeptide/dipeptide ABC transporter, C-terminal|P-loop containing nucleoside triphosphate hydrolase	GO:0000166|GO:0005524|GO:0015833|GO:0016887	G3DSA:3.40.50.300|PF00005|PF08352|PS00211|PTHR24220|PTHR24220:SF442|SM00382|SSF52540|TIGR01727
ALIDE_RS21940	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000246|IPR029055	Nucleophile aminohydrolases, N-terminal|Peptidase T2, asparaginase 2	GO:0016787	PF01112|PTHR10188|PTHR10188:SF24|SSF56235
ALIDE_RS21945	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000281|IPR001347|IPR009057|IPR011991	Helix-turn-helix protein RpiR|Homeodomain-like|Sugar isomerase (SIS)|Winged helix-turn-helix DNA-binding domain	GO:0003677|GO:0003700|GO:0005975|GO:0006355|GO:0030246	G3DSA:1.10.10.10|G3DSA:3.40.50.10490|PF01380|PF01418|PTHR30514|PTHR30514:SF3|SSF46689|SSF53697
ALIDE_RS21960	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000914|IPR030678	Peptide/nickel binding protein, MppA-type|Solute-binding protein family 5 domain	GO:0043190|GO:0055085	G3DSA:3.10.105.10|G3DSA:3.40.190.10|G3DSA:3.90.76.10|PF00496|PIRSF002741|PTHR30290|PTHR30290:SF24|SSF53850
ALIDE_RS21965	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001708|IPR019998|IPR028053|IPR028055	Membrane insertase OXA1/ALB3/YidC|Membrane insertase YidC|Membrane insertase YidC, N-terminal|Membrane insertase YidC/Oxa1, C-terminal	GO:0016021|GO:0051205	MF_01810|PF02096|PF14849|PR00701|PR01900|PTHR12428|PTHR12428:SF14|TIGR03592|TIGR03593
ALIDE_RS21970	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002696	Putative membrane protein insertion efficiency factor		MF_00386|PD004225|PF01809|PTHR33383|SM01234|TIGR00278
ALIDE_RS21975	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000100|IPR014721|IPR020568	Ribonuclease P|Ribosomal protein S5 domain 2-type fold|Ribosomal protein S5 domain 2-type fold, subgroup	GO:0000049|GO:0004526|GO:0008033	G3DSA:3.30.230.10|PF00825|SSF54211
ALIDE_RS21980	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000271|IPR020939	Ribosomal protein L34|Ribosomal protein L34, conserved site	GO:0003735|GO:0005622|GO:0005840|GO:0006412	MF_00391|PD003101|PF00468|PS00784|PTHR14503|TIGR01030
ALIDE_RS22015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002288|IPR013759|IPR013760	DNA gyrase B subunit, C-terminal|DNA topoisomerase, type IIA, central domain|DNA topoisomerase, type IIA-like domain	GO:0003677|GO:0003918|GO:0005524|GO:0006265	G3DSA:3.40.50.670|PF00986|SSF56719
ALIDE_RS22030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000847|IPR011991	Transcription regulator HTH, LysR|Winged helix-turn-helix DNA-binding domain	GO:0003700|GO:0006355	G3DSA:1.10.10.10|G3DSA:3.40.190.10|PF00126|PR00039|PTHR30579|PTHR30579:SF0|SSF46785
ALIDE_RS22170	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004089|IPR004090	Chemotaxis methyl-accepting receptor|Methyl-accepting chemotaxis protein (MCP) signalling domain	GO:0004871|GO:0006935|GO:0007165|GO:0016020	G3DSA:1.10.287.950|PF00015|PR00260|PTHR32089|PTHR32089:SF63|SSF58104
ALIDE_RS22230	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR013727	Two-component sensor kinase, N-terminal		PF08521
ALIDE_RS22270	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002218|IPR020595|IPR023753|IPR026904	FAD/NAD(P)-binding domain|GidA associated domain 3|MnmG-related, conserved site|tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related	GO:0008033|GO:0016491|GO:0050660|GO:0055114	G3DSA:3.50.50.60|PF01134|PF13932|PS01281|PTHR11806|PTHR11806:SF0|SSF51905
ALIDE_RS22340	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR004113|IPR016164	FAD-linked oxidase, C-terminal|FAD-linked oxidase-like, C-terminal	GO:0003824|GO:0050660	PF02913|PTHR11748|PTHR11748:SF97|SSF55103
ALIDE_RS22345	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR016166|IPR016169	CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2|FAD-binding, type 2	GO:0003824|GO:0016614|GO:0050660|GO:0055114	G3DSA:3.30.465.10|PTHR11748|PTHR11748:SF35|SSF56176
ALIDE_RS22600	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000022|IPR029045	Carboxyl transferase|ClpP/crotonase-like domain		G3DSA:3.90.226.10|PF01039|PTHR22855|PTHR22855:SF29|SSF52096
ALIDE_RS22685	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009100|IPR013786	Acyl-CoA dehydrogenase/oxidase, N-terminal|Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain	GO:0008152|GO:0016627|GO:0050660|GO:0055114	G3DSA:1.10.540.10|PF02771|SSF56645
ALIDE_RS22750	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000551|IPR009061	MerR-type HTH domain|Putative DNA-binding domain	GO:0003677|GO:0006355	G3DSA:1.10.1660.10|PF13411|PR00040|PS00552|PTHR30204|PTHR30204:SF16|SM00422|SSF46955
ALIDE_RS22895	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006685|IPR010920|IPR011014	LSM domain|Mechanosensitive ion channel MscS|Mechanosensitive ion channel MscS, transmembrane-2	GO:0016020|GO:0055085	G3DSA:2.30.30.60|PF00924|PTHR30221|PTHR30221:SF3|SSF50182|SSF82861
ALIDE_RS22930	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006528	Phage head morphogenesis domain		PF04233
ALIDE_RS22985	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001343|IPR010566|IPR011049|IPR018511|IPR024442	Haemolysin-type calcium binding-related|Haemolysin-type calcium-binding repeat|Hemolysin-type calcium-binding conserved site|Serralysin-like metalloprotease, C-terminal|Transposase, zinc-ribbon	GO:0005509	G3DSA:2.150.10.10|PF00353|PF06594|PF12760|PR00313|PS00330|SSF51120
ALIDE_RS23010	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR007499	Essential recombination function protein		PF04404
ALIDE_RS23015	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010982|IPR015927|IPR019759|IPR028360	Lambda repressor-like, DNA-binding domain|Peptidase S24/S26, beta-ribbon domain|Peptidase S24/S26A/S26B|Peptidase S24/S26A/S26B/S26C	GO:0003677	G3DSA:1.10.260.40|G3DSA:2.10.109.10|PF00717|PTHR33516|PTHR33516:SF3|SSF51306
ALIDE_RS23030	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002104|IPR011010|IPR013762	DNA breaking-rejoining enzyme, catalytic core|Integrase, catalytic domain|Integrase-like, catalytic domain	GO:0003677|GO:0006310|GO:0015074	G3DSA:1.10.443.10|PF00589|PTHR30349|PTHR30349:SF28|SSF56349
ALIDE_RS23040	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006171	Toprim domain		G3DSA:3.40.1360.10|PF13362
ALIDE_RS23045	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009363	Bacteriophage Mu, Gp16		PF06252
ALIDE_RS23050	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010744	Bacteriophage CI repressor	GO:0003677|GO:0045892	PF07022
ALIDE_RS23055	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009628	Bacteriophage lambda, GpH, tail tape measure, N-terminal		PF06791
ALIDE_RS23070	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011041	Soluble quinoprotein glucose/sorbosone dehydrogenase	GO:0003824	SSF50952
ALIDE_RS23075	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR010906|IPR011991	Bacteriophage lambda, Nu1, terminase small subunit|Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|PF07471
ALIDE_RS23085	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR011991	Winged helix-turn-helix DNA-binding domain		G3DSA:1.10.10.10|SSF46785
ALIDE_RS23090	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003115	ParB/Sulfiredoxin		G3DSA:3.90.1530.10|PF02195|SM00470|SSF110849
ALIDE_RS23095	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR009679	Bacteriophage 186, CII		PF06892
ALIDE_RS23110	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR019276	Protein of unkown function DUF2303		PF10065
ALIDE_RS23115	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR006674	HD domain		G3DSA:1.10.3210.10|SSF109604
ALIDE_RS23125	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR002052|IPR012263|IPR012327|IPR023095|IPR029063	Adenine modification methylase, M.EcoRV-type|Adenine-specific methyltransferase, domain 2|D12 class N6 adenine-specific DNA methyltransferase|DNA methylase, N-6 adenine-specific, conserved site|S-adenosyl-L-methionine-dependent methyltransferase	GO:0003676|GO:0008168|GO:0009007|GO:0032259|GO:0032775	G3DSA:1.10.1020.10|G3DSA:3.40.50.150|PF02086|PIRSF000398|PR00505|PS00092|PTHR30481|SSF53335|TIGR00571
ALIDE_RS23140	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR003594|IPR003661|IPR004358|IPR013656	Histidine kinase-like ATPase, C-terminal domain|PAS domain|PAS fold-4|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain|Signal transduction histidine kinase-related protein, C-terminal	GO:0000155|GO:0007165|GO:0016310|GO:0016772	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF02518|PF08448|PR00344|PTHR24423|SM00091|SM00387|SM00388|SSF47384|SSF55785|SSF55874|TIGR00229
ALIDE_RS23150	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.30.1540.10|G3DSA:3.40.50.10540|PF02515|SSF89796
ALIDE_RS23155	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR003673|IPR023606	CoA-transferase family III|CoA-transferase family III domain	GO:0003824	G3DSA:3.40.50.10540|PF02515|SSF89796
ALIDE_RS23160	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR001221|IPR001433|IPR017938	Oxidoreductase FAD/NAD(P)-binding|Phenol hydroxylase reductase|Riboflavin synthase-like beta-barrel	GO:0016491|GO:0055114	G3DSA:2.40.30.10|G3DSA:3.40.50.80|PF00175|PR00410|PTHR19370|SSF52343|SSF63380
ALIDE_RS23165	/var/genomes/g2d_mirror/Alicycliphilus_denitrificans_BC/ASM17901v2_genomic	IPR000014|IPR001610|IPR003594|IPR003661|IPR013656	Histidine kinase-like ATPase, C-terminal domain|PAC motif|PAS domain|PAS fold-4|Signal transduction histidine kinase, dimerisation/phosphoacceptor domain	GO:0000155|GO:0007165	G3DSA:1.10.287.130|G3DSA:3.30.450.20|G3DSA:3.30.565.10|PF00512|PF08448|PTHR24423|PTHR24423:SF522|SM00086|SM00091|SM00388|SSF47384|SSF55785|TIGR00229