locus-tag class description VF_0001 PF00258 Flavodoxin VF_0002 PF12631 MnmE helical domain VF_0002 PF01926 50S ribosome-binding GTPase VF_0002 PF10396 GTP-binding protein TrmE N-terminus VF_0003 PF14849 YidC periplasmic domain VF_0003 PF02096 60Kd inner membrane protein VF_0004 PF00825 Ribonuclease P VF_0005 PF00468 Ribosomal protein L34 VF_0006 PF00005 ABC transporter VF_0007 PF00528 Binding-protein-dependent transport system inner membrane component VF_0008 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_0009 PF11638 DnaA N-terminal domain VF_0009 PF08299 Bacterial dnaA protein helix-turn-helix VF_0009 PF00308 Bacterial dnaA protein VF_0010 PF02768 DNA polymerase III beta subunit, C-terminal domain VF_0010 PF00712 DNA polymerase III beta subunit, N-terminal domain VF_0010 PF02767 DNA polymerase III beta subunit, central domain VF_0011 PF02463 RecF/RecN/SMC N terminal domain VF_0012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0012 PF18053 DNA gyrase B subunit insert domain VF_0012 PF00986 DNA gyrase B subunit, carboxyl terminus VF_0012 PF00204 DNA gyrase B VF_0012 PF01751 Toprim domain VF_0013 PF00011 Hsp20/alpha crystallin family VF_0014 PF00155 Aminotransferase class I and II VF_0015 PF02091 Glycyl-tRNA synthetase alpha subunit VF_0016 PF05746 DALR anticodon binding domain VF_0016 PF02092 Glycyl-tRNA synthetase beta subunit VF_0017 PF00128 Alpha amylase, catalytic domain VF_0019 PF01206 Sulfurtransferase TusA VF_0021 PF03466 LysR substrate binding domain VF_0021 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0022 PF05360 yiaA/B two helix domain VF_0023 PF00107 Zinc-binding dehydrogenase VF_0023 PF08240 Alcohol dehydrogenase GroES-like domain VF_0024 PF00108 Thiolase, N-terminal domain VF_0024 PF02803 Thiolase, C-terminal domain VF_0025 PF00378 Enoyl-CoA hydratase/isomerase VF_0025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VF_0025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VF_0026 PF09186 Domain of unknown function (DUF1949) VF_0026 PF01205 Uncharacterized protein family UPF0029 VF_0027 PF02386 Cation transport protein VF_0028 PF12724 Flavodoxin domain VF_0029 PF00675 Insulinase (Peptidase family M16) VF_0029 PF05193 Peptidase M16 inactive domain VF_0031 PF00654 Voltage gated chloride channel VF_0032 PF13667 ThiC-associated domain VF_0032 PF01964 Radical SAM ThiC family VF_0033 PF02581 Thiamine monophosphate synthase VF_0034 PF00899 ThiF family VF_0035 PF05690 Thiazole biosynthesis protein ThiG VF_0036 PF04055 Radical SAM superfamily VF_0036 PF06968 Biotin and Thiamin Synthesis associated domain VF_0037 PF02838 Glycosyl hydrolase family 20, domain 2 VF_0037 PF07691 PA14 domain VF_0037 PF00728 Glycosyl hydrolase family 20, catalytic domain VF_0038 PF00557 Metallopeptidase family M24 VF_0038 PF01321 Creatinase/Prolidase N-terminal domain VF_0038 PF00557 Metallopeptidase family M24 VF_0038 PF01321 Creatinase/Prolidase N-terminal domain VF_0040 PF03466 LysR substrate binding domain VF_0040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0041 PF07690 Major Facilitator Superfamily VF_0044 PF02646 RmuC family VF_0046 PF01209 ubiE/COQ5 methyltransferase family VF_0047 PF02036 SCP-2 sterol transfer family VF_0048 PF03109 ABC1 family VF_0049 PF02416 mttA/Hcf106 family VF_0050 PF02416 mttA/Hcf106 family VF_0051 PF00902 Sec-independent protein translocase protein (TatC) VF_0052 PF01026 TatD related DNase VF_0053 PF00490 Delta-aminolevulinic acid dehydratase VF_0054 PF02541 Ppx/GppA phosphatase family VF_0056 PF00270 DEAD/DEAH box helicase VF_0056 PF00271 Helicase conserved C-terminal domain VF_0057 PF00085 Thioredoxin VF_0058 PF07498 Rho termination factor, N-terminal domain VF_0058 PF07497 Rho termination factor, RNA-binding domain VF_0058 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VF_0060 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VF_0061 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_0061 PF00970 Oxidoreductase FAD-binding domain VF_0061 PF00175 Oxidoreductase NAD-binding domain VF_0062 PF00970 Oxidoreductase FAD-binding domain VF_0062 PF00175 Oxidoreductase NAD-binding domain VF_0063 PF07219 HemY protein N-terminus VF_0063 PF07719 Tetratricopeptide repeat VF_0064 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VF_0065 PF02602 Uroporphyrinogen-III synthase HemD VF_0066 PF03900 Porphobilinogen deaminase, C-terminal domain VF_0066 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VF_0067 PF01295 Adenylate cyclase, class-I VF_0067 PF12633 Adenylate cyclase NT domain VF_0068 PF00580 UvrD/REP helicase N-terminal domain VF_0068 PF13361 UvrD-like helicase C-terminal domain VF_0069 PF00892 EamA-like transporter family VF_0070 PF00570 HRDC domain VF_0070 PF16124 RecQ zinc-binding VF_0070 PF09382 RQC domain VF_0070 PF00271 Helicase conserved C-terminal domain VF_0070 PF00270 DEAD/DEAH box helicase VF_0072 PF07690 Major Facilitator Superfamily VF_0073 PF02592 Putative vitamin uptake transporter VF_0074 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VF_0074 PF00476 DNA polymerase family A VF_0074 PF01612 3'-5' exonuclease VF_0074 PF01367 5'-3' exonuclease, C-terminal SAM fold VF_0075 PF01926 50S ribosome-binding GTPase VF_0076 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VF_0078 PF04220 Der GTPase activator (YihI) VF_0079 PF10675 Protein of unknown function (DUF2489) VF_0080 PF06969 HemN C-terminal domain VF_0080 PF04055 Radical SAM superfamily VF_0081 PF01037 Lrp/AsnC ligand binding domain VF_0082 PF04445 Putative SAM-dependent methyltransferase VF_0083 PF00582 Universal stress protein family VF_0084 PF00210 Ferritin-like domain VF_0085 PF10625 Universal stress protein B (UspB) VF_0087 PF08495 FIST N domain VF_0087 PF10442 FIST C domain VF_0087 PF00563 EAL domain VF_0087 PF00990 Diguanylate cyclase, GGDEF domain VF_0088 PF03942 DTW domain VF_0090 PF01081 KDPG and KHG aldolase VF_0091 PF00563 EAL domain VF_0091 PF00990 Diguanylate cyclase, GGDEF domain VF_0091 PF08447 PAS fold VF_0091 PF08448 PAS fold VF_0093 PF00962 Adenosine/AMP deaminase VF_0094 PF01590 GAF domain VF_0094 PF00990 Diguanylate cyclase, GGDEF domain VF_0094 PF00360 Phytochrome region VF_0094 PF00563 EAL domain VF_0095 PF00158 Sigma-54 interaction domain VF_0095 PF00072 Response regulator receiver domain VF_0095 PF02954 Bacterial regulatory protein, Fis family VF_0096 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0096 PF00512 His Kinase A (phospho-acceptor) domain VF_0096 PF00989 PAS fold VF_0098 PF00120 Glutamine synthetase, catalytic domain VF_0098 PF03951 Glutamine synthetase, beta-Grasp domain VF_0099 PF03144 Elongation factor Tu domain 2 VF_0099 PF00009 Elongation factor Tu GTP binding domain VF_0099 PF00679 Elongation factor G C-terminus VF_0100 PF03631 Virulence factor BrkB VF_0101 PF02580 D-Tyr-tRNA(Tyr) deacylase VF_0102 PF00583 Acetyltransferase (GNAT) family VF_0102 PF09500 Putative thioesterase (yiiD_Cterm) VF_0103 PF12105 SpoU, rRNA methylase, C-terminal VF_0103 PF00588 SpoU rRNA Methylase family VF_0104 PF04607 Region found in RelA / SpoT proteins VF_0104 PF02824 TGS domain VF_0104 PF13291 ACT domain VF_0105 PF01192 RNA polymerase Rpb6 VF_0106 PF00625 Guanylate kinase VF_0109 PF00892 EamA-like transporter family VF_0110 PF03755 YicC-like family, N-terminal region VF_0110 PF08340 Domain of unknown function (DUF1732) VF_0111 PF03725 3' exoribonuclease family, domain 2 VF_0111 PF01138 3' exoribonuclease family, domain 1 VF_0112 PF00156 Phosphoribosyl transferase domain VF_0114 PF00072 Response regulator receiver domain VF_0114 PF00486 Transcriptional regulatory protein, C terminal VF_0115 PF00672 HAMP domain VF_0115 PF00512 His Kinase A (phospho-acceptor) domain VF_0115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0116 PF00860 Permease family VF_0117 PF00156 Phosphoribosyl transferase domain VF_0118 PF00561 alpha/beta hydrolase fold VF_0120 PF09371 Tex-like protein N-terminal domain VF_0120 PF00575 S1 RNA binding domain VF_0120 PF17674 HHH domain VF_0120 PF16921 Tex protein YqgF-like domain VF_0121 PF03449 Transcription elongation factor, N-terminal VF_0121 PF01272 Transcription elongation factor, GreA/GreB, C-term VF_0122 PF03279 Bacterial lipid A biosynthesis acyltransferase VF_0124 PF00440 Bacterial regulatory proteins, tetR family VF_0125 PF04127 DNA / pantothenate metabolism flavoprotein VF_0125 PF02441 Flavoprotein VF_0126 PF04002 RadC-like JAB domain VF_0127 PF00830 Ribosomal L28 family VF_0128 PF00471 Ribosomal protein L33 VF_0130 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VF_0130 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VF_0130 PF06827 Zinc finger found in FPG and IleRS VF_0131 PF00884 Sulfatase VF_0132 PF01467 Cytidylyltransferase-like VF_0133 PF00534 Glycosyl transferases group 1 VF_0133 PF13439 Glycosyltransferase Family 4 VF_0134 PF00535 Glycosyl transferase family 2 VF_0135 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VF_0137 PF00884 Sulfatase VF_0137 PF11893 Domain of unknown function (DUF3413) VF_0138 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VF_0139 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VF_0140 PF02719 Polysaccharide biosynthesis protein VF_0141 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VF_0142 PF02350 UDP-N-acetylglucosamine 2-epimerase VF_0143 PF03102 NeuB family VF_0143 PF08666 SAF domain VF_0145 PF00483 Nucleotidyl transferase VF_0147 PF02348 Cytidylyltransferase VF_0149 PF13439 Glycosyltransferase Family 4 VF_0149 PF00534 Glycosyl transferases group 1 VF_0152 PF01370 NAD dependent epimerase/dehydratase family VF_0153 PF10996 Beta-Casp domain VF_0153 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VF_0153 PF00753 Metallo-beta-lactamase superfamily VF_0155 PF00440 Bacterial regulatory proteins, tetR family VF_0155 PF08360 QacR-like protein, C-terminal region VF_0157 PF06082 Exopolysaccharide biosynthesis protein YbjH VF_0160 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VF_0162 PF02563 Polysaccharide biosynthesis/export protein VF_0162 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VF_0162 PF10531 SLBB domain VF_0164 PF01451 Low molecular weight phosphotyrosine protein phosphatase VF_0165 PF02706 Chain length determinant protein VF_0165 PF13807 G-rich domain on putative tyrosine kinase VF_0165 PF13614 AAA domain VF_0166 PF16363 GDP-mannose 4,6 dehydratase VF_0167 PF00483 Nucleotidyl transferase VF_0168 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VF_0170 PF01943 Polysaccharide biosynthesis protein VF_0174 PF00535 Glycosyl transferase family 2 VF_0175 PF00535 Glycosyl transferase family 2 VF_0176 PF00793 DAHP synthetase I family VF_0178 PF02348 Cytidylyltransferase VF_0179 PF01380 SIS domain VF_0179 PF00571 CBS domain VF_0180 PF00953 Glycosyl transferase family 4 VF_0181 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_0181 PF00970 Oxidoreductase FAD-binding domain VF_0181 PF00175 Oxidoreductase NAD-binding domain VF_0182 PF00483 Nucleotidyl transferase VF_0183 PF16363 GDP-mannose 4,6 dehydratase VF_0184 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VF_0185 PF00205 Thiamine pyrophosphate enzyme, central domain VF_0185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VF_0185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VF_0191 PF02719 Polysaccharide biosynthesis protein VF_0191 PF08485 Polysaccharide biosynthesis protein C-terminal VF_0192 PF01370 NAD dependent epimerase/dehydratase family VF_0193 PF02350 UDP-N-acetylglucosamine 2-epimerase VF_0194 PF13579 Glycosyl transferase 4-like domain VF_0195 PF01370 NAD dependent epimerase/dehydratase family VF_0196 PF02397 Bacterial sugar transferase VF_0197 PF02719 Polysaccharide biosynthesis protein VF_0201 PF16363 GDP-mannose 4,6 dehydratase VF_0202 PF01676 Metalloenzyme superfamily VF_0202 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VF_0203 PF01554 MatE VF_0204 PF00166 Chaperonin 10 Kd subunit VF_0205 PF00118 TCP-1/cpn60 chaperonin family VF_0206 PF00121 Triosephosphate isomerase VF_0209 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VF_0210 PF06005 Cell division protein ZapB VF_0211 PF03737 Aldolase/RraA VF_0212 PF01040 UbiA prenyltransferase family VF_0214 PF00485 Phosphoribulokinase / Uridine kinase family VF_0215 PF06794 Uncharacterised protein family (UPF0270) VF_0216 PF00561 alpha/beta hydrolase fold VF_0218 PF00005 ABC transporter VF_0218 PF12848 ABC transporter VF_0219 PF02525 Flavodoxin-like fold VF_0220 PF00999 Sodium/hydrogen exchanger family VF_0220 PF02254 TrkA-N domain VF_0223 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_0224 PF04102 SlyX VF_0226 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VF_0226 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_0227 PF08348 YheO-like PAS domain VF_0227 PF13309 HTH domain VF_0228 PF02635 DsrE/DsrF-like family VF_0229 PF02635 DsrE/DsrF-like family VF_0230 PF00164 Ribosomal protein S12/S23 VF_0231 PF00177 Ribosomal protein S7p/S5e VF_0232 PF03764 Elongation factor G, domain IV VF_0232 PF03144 Elongation factor Tu domain 2 VF_0232 PF00009 Elongation factor Tu GTP binding domain VF_0232 PF00679 Elongation factor G C-terminus VF_0232 PF14492 Elongation Factor G, domain II VF_0233 PF00009 Elongation factor Tu GTP binding domain VF_0233 PF03143 Elongation factor Tu C-terminal domain VF_0233 PF03144 Elongation factor Tu domain 2 VF_0234 PF00338 Ribosomal protein S10p/S20e VF_0235 PF00297 Ribosomal protein L3 VF_0237 PF00573 Ribosomal protein L4/L1 family VF_0238 PF00276 Ribosomal protein L23 VF_0239 PF00181 Ribosomal Proteins L2, RNA binding domain VF_0239 PF03947 Ribosomal Proteins L2, C-terminal domain VF_0240 PF00203 Ribosomal protein S19 VF_0241 PF00237 Ribosomal protein L22p/L17e VF_0242 PF00189 Ribosomal protein S3, C-terminal domain VF_0242 PF07650 KH domain VF_0243 PF00252 Ribosomal protein L16p/L10e VF_0244 PF00831 Ribosomal L29 protein VF_0245 PF00366 Ribosomal protein S17 VF_0246 PF00238 Ribosomal protein L14p/L23e VF_0248 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VF_0249 PF00281 Ribosomal protein L5 VF_0249 PF00673 ribosomal L5P family C-terminus VF_0250 PF00253 Ribosomal protein S14p/S29e VF_0251 PF00410 Ribosomal protein S8 VF_0252 PF00347 Ribosomal protein L6 VF_0253 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VF_0254 PF03719 Ribosomal protein S5, C-terminal domain VF_0254 PF00333 Ribosomal protein S5, N-terminal domain VF_0255 PF00327 Ribosomal protein L30p/L7e VF_0256 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VF_0257 PF00344 SecY translocase VF_0258 PF00444 Ribosomal protein L36 VF_0259 PF00416 Ribosomal protein S13/S18 VF_0260 PF00411 Ribosomal protein S11 VF_0261 PF01479 S4 domain VF_0261 PF00163 Ribosomal protein S4/S9 N-terminal domain VF_0262 PF01000 RNA polymerase Rpb3/RpoA insert domain VF_0262 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VF_0262 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VF_0263 PF01196 Ribosomal protein L17 VF_0264 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VF_0265 PF01225 Mur ligase family, catalytic domain VF_0265 PF02875 Mur ligase family, glutamate ligase domain VF_0265 PF08245 Mur ligase middle domain VF_0266 PF02441 Flavoprotein VF_0268 PF00528 Binding-protein-dependent transport system inner membrane component VF_0269 PF00005 ABC transporter VF_0270 PF00176 SNF2 family N-terminal domain VF_0270 PF18339 RapA N-terminal Tudor like domain 1 VF_0270 PF12137 RNA polymerase recycling family C-terminal VF_0270 PF00271 Helicase conserved C-terminal domain VF_0270 PF18337 RapA N-terminal Tudor like domain VF_0271 PF00849 RNA pseudouridylate synthase VF_0272 PF00582 Universal stress protein family VF_0275 PF02863 Arginine repressor, C-terminal domain VF_0275 PF01316 Arginine repressor, DNA binding domain VF_0276 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VF_0276 PF00056 lactate/malate dehydrogenase, NAD binding domain VF_0277 PF00348 Polyprenyl synthetase VF_0278 PF00829 Ribosomal prokaryotic L21 protein VF_0279 PF01016 Ribosomal L27 protein VF_0280 PF01018 GTP1/OBG VF_0280 PF01926 50S ribosome-binding GTPase VF_0281 PF06738 Putative threonine/serine exporter VF_0283 PF12821 Threonine/Serine exporter, ThrE VF_0284 PF00186 Dihydrofolate reductase VF_0285 PF00149 Calcineurin-like phosphoesterase VF_0286 PF00398 Ribosomal RNA adenine dimethylase VF_0287 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VF_0288 PF09312 SurA N-terminal domain VF_0289 PF04453 LPS transport system D VF_0289 PF03968 OstA-like protein VF_0290 PF00226 DnaJ domain VF_0290 PF05099 Tellurite resistance protein TerB VF_0292 PF00694 Aconitase C-terminal domain VF_0293 PF00330 Aconitase family (aconitate hydratase) VF_0294 PF00180 Isocitrate/isopropylmalate dehydrogenase VF_0295 PF00682 HMGL-like VF_0295 PF08502 LeuA allosteric (dimerisation) domain VF_0298 PF00873 AcrB/AcrD/AcrF family VF_0301 PF00772 DnaB-like helicase N terminal domain VF_0301 PF03796 DnaB-like helicase C terminal domain VF_0302 PF00842 Alanine racemase, C-terminal domain VF_0302 PF01168 Alanine racemase, N-terminal domain VF_0304 PF00342 Phosphoglucose isomerase VF_0306 PF01475 Ferric uptake regulator family VF_0307 PF01207 Dihydrouridine synthase (Dus) VF_0310 PF00258 Flavodoxin VF_0310 PF00175 Oxidoreductase NAD-binding domain VF_0310 PF00667 FAD binding domain VF_0311 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VF_0311 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VF_0312 PF01507 Phosphoadenosine phosphosulfate reductase family VF_0314 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VF_0314 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_0315 PF08525 Opacity-associated protein A N-terminal motif VF_0315 PF04225 Opacity-associated protein A LysM-like domain VF_0317 PF13673 Acetyltransferase (GNAT) domain VF_0319 PF02872 5'-nucleotidase, C-terminal domain VF_0319 PF00149 Calcineurin-like phosphoesterase VF_0320 PF01507 Phosphoadenosine phosphosulfate reductase family VF_0321 PF00009 Elongation factor Tu GTP binding domain VF_0322 PF02080 TrkA-C domain VF_0322 PF03600 Citrate transporter VF_0326 PF12704 MacB-like periplasmic core domain VF_0326 PF02687 FtsX-like permease family VF_0327 PF00005 ABC transporter VF_0329 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VF_0330 PF06526 Protein of unknown function (DUF1107) VF_0331 PF01625 Peptide methionine sulfoxide reductase VF_0332 PF01103 Surface antigen VF_0332 PF07244 Surface antigen variable number repeat VF_0332 PF17243 POTRA domain TamA domain 1 VF_0333 PF04357 TamB, inner membrane protein subunit of TAM complex VF_0336 PF00999 Sodium/hydrogen exchanger family VF_0337 PF02607 B12 binding domain VF_0337 PF02965 Vitamin B12 dependent methionine synthase, activation domain VF_0337 PF02310 B12 binding domain VF_0337 PF02574 Homocysteine S-methyltransferase VF_0337 PF00809 Pterin binding enzyme VF_0338 PF00696 Amino acid kinase family VF_0338 PF01842 ACT domain VF_0339 PF00266 Aminotransferase class-V VF_0341 PF00005 ABC transporter VF_0341 PF17755 UvrA DNA-binding domain VF_0341 PF17760 UvrA interaction domain VF_0342 PF00483 Nucleotidyl transferase VF_0344 PF13439 Glycosyltransferase Family 4 VF_0344 PF00534 Glycosyl transferases group 1 VF_0345 PF00534 Glycosyl transferases group 1 VF_0350 PF02563 Polysaccharide biosynthesis/export protein VF_0350 PF10531 SLBB domain VF_0350 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VF_0352 PF02397 Bacterial sugar transferase VF_0353 PF00436 Single-strand binding protein family VF_0355 PF00990 Diguanylate cyclase, GGDEF domain VF_0355 PF17157 Gammaproteobacterial periplasmic sensor domain VF_0355 PF00563 EAL domain VF_0359 PF03958 Bacterial type II/III secretion system short domain VF_0359 PF00263 Bacterial type II and III secretion system protein VF_0360 PF01471 Putative peptidoglycan binding domain VF_0360 PF13401 AAA domain VF_0362 PF00437 Type II/IV secretion system protein VF_0362 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VF_0363 PF00482 Type II secretion system (T2SS), protein F VF_0365 PF07963 Prokaryotic N-terminal methylation motif VF_0366 PF00114 Pilin (bacterial filament) VF_0366 PF07963 Prokaryotic N-terminal methylation motif VF_0373 PF04085 rod shape-determining protein MreC VF_0374 PF04093 rod shape-determining protein MreD VF_0375 PF02545 Maf-like protein VF_0376 PF00575 S1 RNA binding domain VF_0376 PF10150 Ribonuclease E/G family VF_0377 PF13116 Protein of unknown function VF_0377 PF13502 AsmA-like C-terminal region VF_0378 PF00795 Carbon-nitrogen hydrolase VF_0379 PF01523 Putative modulator of DNA gyrase VF_0380 PF04751 Protein of unknown function (DUF615) VF_0381 PF01523 Putative modulator of DNA gyrase VF_0382 PF00571 CBS domain VF_0382 PF01769 Divalent cation transporter VF_0382 PF03448 MgtE intracellular N domain VF_0383 PF00381 PTS HPr component phosphorylation site VF_0384 PF03668 P-loop ATPase protein family VF_0385 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VF_0386 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VF_0387 PF04552 Sigma-54, DNA binding domain VF_0387 PF04963 Sigma-54 factor, core binding domain VF_0387 PF00309 Sigma-54 factor, Activator interacting domain (AID) VF_0388 PF12399 Branched-chain amino acid ATP-binding cassette transporter VF_0388 PF00005 ABC transporter VF_0389 PF03968 OstA-like protein VF_0392 PF00571 CBS domain VF_0392 PF01380 SIS domain VF_0393 PF01699 Sodium/calcium exchanger protein VF_0394 PF00005 ABC transporter VF_0395 PF02405 Permease MlaE VF_0396 PF02470 MlaD protein VF_0397 PF05494 MlaC protein VF_0400 PF01722 BolA-like protein VF_0401 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VF_0402 PF01553 Acyltransferase VF_0403 PF00293 NUDIX domain VF_0404 PF01042 Endoribonuclease L-PSP VF_0405 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VF_0405 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VF_0406 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VF_0406 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VF_0407 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VF_0407 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VF_0409 PF06877 Regulator of ribonuclease activity B VF_0411 PF00133 tRNA synthetases class I (I, L, M and V) VF_0411 PF08264 Anticodon-binding domain of tRNA VF_0411 PF10458 Valyl tRNA synthetase tRNA binding arm VF_0412 PF04364 DNA polymerase III chi subunit, HolC VF_0413 PF02789 Cytosol aminopeptidase family, N-terminal domain VF_0413 PF00883 Cytosol aminopeptidase family, catalytic domain VF_0414 PF03739 Lipopolysaccharide export system permease LptF/LptG VF_0415 PF03739 Lipopolysaccharide export system permease LptF/LptG VF_0418 PF01219 Prokaryotic diacylglycerol kinase VF_0420 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VF_0420 PF01464 Transglycosylase SLT domain VF_0421 PF04362 Bacterial Fe(2+) trafficking VF_0422 PF00633 Helix-hairpin-helix motif VF_0422 PF10576 Iron-sulfur binding domain of endonuclease III VF_0422 PF00730 HhH-GPD superfamily base excision DNA repair protein VF_0422 PF14815 NUDIX domain VF_0423 PF04960 Glutaminase VF_0424 PF06969 HemN C-terminal domain VF_0424 PF04055 Radical SAM superfamily VF_0425 PF01725 Ham1 family VF_0427 PF02594 Uncharacterised ACR, YggU family COG1872 VF_0428 PF02325 YGGT family VF_0429 PF14748 Pyrroline-5-carboxylate reductase dimerisation VF_0429 PF03807 NADP oxidoreductase coenzyme F420-dependent VF_0430 PF01168 Alanine racemase, N-terminal domain VF_0431 PF00437 Type II/IV secretion system protein VF_0432 PF00437 Type II/IV secretion system protein VF_0433 PF03652 Holliday junction resolvase VF_0434 PF02622 Uncharacterized ACR, COG1678 VF_0435 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VF_0435 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VF_0436 PF04452 RNA methyltransferase VF_0437 PF04231 Endonuclease I VF_0438 PF10263 SprT-like family VF_0438 PF17283 SprT-like zinc ribbon domain VF_0439 PF00438 S-adenosylmethionine synthetase, N-terminal domain VF_0439 PF02772 S-adenosylmethionine synthetase, central domain VF_0439 PF02773 S-adenosylmethionine synthetase, C-terminal domain VF_0440 PF02780 Transketolase, C-terminal domain VF_0440 PF02779 Transketolase, pyrimidine binding domain VF_0440 PF00456 Transketolase, thiamine diphosphate binding domain VF_0441 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VF_0441 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VF_0442 PF00162 Phosphoglycerate kinase VF_0443 PF01116 Fructose-bisphosphate aldolase class-II VF_0444 PF00271 Helicase conserved C-terminal domain VF_0444 PF00270 DEAD/DEAH box helicase VF_0445 PF05175 Methyltransferase small domain VF_0446 PF05525 Branched-chain amino acid transport protein VF_0447 PF00258 Flavodoxin VF_0448 PF02899 Phage integrase, N-terminal SAM-like domain VF_0448 PF00589 Phage integrase family VF_0449 PF10411 Disulfide bond isomerase protein N-terminus VF_0449 PF13098 Thioredoxin-like domain VF_0450 PF02272 DHHA1 domain VF_0450 PF17768 RecJ OB domain VF_0450 PF01368 DHH family VF_0453 PF00152 tRNA synthetases class II (D, K and N) VF_0454 PF02954 Bacterial regulatory protein, Fis family VF_0454 PF00158 Sigma-54 interaction domain VF_0454 PF00072 Response regulator receiver domain VF_0455 PF02976 DNA mismatch repair enzyme MutH VF_0456 PF00293 NUDIX domain VF_0457 PF00391 PEP-utilising enzyme, mobile domain VF_0457 PF05524 PEP-utilising enzyme, N-terminal VF_0457 PF02896 PEP-utilising enzyme, TIM barrel domain VF_0457 PF01590 GAF domain VF_0458 PF01925 Sulfite exporter TauE/SafE VF_0459 PF01790 Prolipoprotein diacylglyceryl transferase VF_0460 PF00303 Thymidylate synthase VF_0461 PF02690 Na+/Pi-cotransporter VF_0462 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0462 PF03466 LysR substrate binding domain VF_0463 PF01022 Bacterial regulatory protein, arsR family VF_0464 PF01649 Ribosomal protein S20 VF_0465 PF03023 Lipid II flippase MurJ VF_0466 PF06574 FAD synthetase VF_0466 PF01687 Riboflavin kinase VF_0467 PF08264 Anticodon-binding domain of tRNA VF_0467 PF00133 tRNA synthetases class I (I, L, M and V) VF_0467 PF06827 Zinc finger found in FPG and IleRS VF_0468 PF01252 Signal peptidase (SPase) II VF_0469 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_0470 PF02401 LytB protein VF_0471 PF01113 Dihydrodipicolinate reductase, N-terminus VF_0471 PF05173 Dihydrodipicolinate reductase, C-terminus VF_0472 PF00117 Glutamine amidotransferase class-I VF_0472 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VF_0473 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VF_0473 PF02142 MGS-like domain VF_0473 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VF_0474 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VF_0475 PF13609 Gram-negative porin VF_0476 PF03449 Transcription elongation factor, N-terminal VF_0476 PF01272 Transcription elongation factor, GreA/GreB, C-term VF_0477 PF01985 CRS1 / YhbY (CRM) domain VF_0478 PF01728 FtsJ-like methyltransferase VF_0479 PF00004 ATPase family associated with various cellular activities (AAA) VF_0479 PF17862 AAA+ lid domain VF_0479 PF06480 FtsH Extracellular VF_0479 PF01434 Peptidase family M41 VF_0480 PF00809 Pterin binding enzyme VF_0481 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VF_0481 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VF_0481 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VF_0481 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VF_0483 PF03840 Preprotein translocase SecG subunit VF_0484 PF02576 RimP N-terminal domain VF_0484 PF17384 RimP C-terminal SH3 domain VF_0485 PF13184 NusA-like KH domain VF_0485 PF00575 S1 RNA binding domain VF_0485 PF08529 NusA N-terminal domain VF_0486 PF04760 Translation initiation factor IF-2, N-terminal region VF_0486 PF00009 Elongation factor Tu GTP binding domain VF_0486 PF08364 Bacterial translation initiation factor IF-2 associated region VF_0486 PF11987 Translation-initiation factor 2 VF_0487 PF02033 Ribosome-binding factor A VF_0488 PF16198 tRNA pseudouridylate synthase B C-terminal domain VF_0488 PF09157 Pseudouridine synthase II TruB, C-terminal VF_0488 PF01509 TruB family pseudouridylate synthase (N terminal domain) VF_0489 PF00312 Ribosomal protein S15 VF_0490 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VF_0490 PF00575 S1 RNA binding domain VF_0490 PF00013 KH domain VF_0490 PF01138 3' exoribonuclease family, domain 1 VF_0490 PF03725 3' exoribonuclease family, domain 2 VF_0491 PF07719 Tetratricopeptide repeat VF_0491 PF13181 Tetratricopeptide repeat VF_0492 PF01136 Peptidase family U32 VF_0493 PF01136 Peptidase family U32 VF_0494 PF03707 Bacterial signalling protein N terminal repeat VF_0494 PF00990 Diguanylate cyclase, GGDEF domain VF_0494 PF00563 EAL domain VF_0495 PF02036 SCP-2 sterol transfer family VF_0496 PF13508 Acetyltransferase (GNAT) domain VF_0499 PF00583 Acetyltransferase (GNAT) family VF_0500 PF16658 Class II release factor RF3, C-terminal domain VF_0500 PF00009 Elongation factor Tu GTP binding domain VF_0500 PF03144 Elongation factor Tu domain 2 VF_0501 PF01026 TatD related DNase VF_0502 PF07662 Na+ dependent nucleoside transporter C-terminus VF_0502 PF01773 Na+ dependent nucleoside transporter N-terminus VF_0502 PF07670 Nucleoside recognition VF_0504 PF01791 DeoC/LacD family aldolase VF_0505 PF02885 Glycosyl transferase family, helical bundle domain VF_0505 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VF_0505 PF00591 Glycosyl transferase family, a/b domain VF_0506 PF01676 Metalloenzyme superfamily VF_0507 PF01048 Phosphorylase superfamily VF_0509 PF18429 Domain of unknown function (DUF5609) VF_0513 PF00263 Bacterial type II and III secretion system protein VF_0513 PF13629 Pilus formation protein N terminal region VF_0513 PF04972 BON domain VF_0516 PF00437 Type II/IV secretion system protein VF_0523 PF00691 OmpA family VF_0524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0526 PF00486 Transcriptional regulatory protein, C terminal VF_0526 PF00072 Response regulator receiver domain VF_0528 PF18073 Rubredoxin metal binding domain VF_0529 PF00679 Elongation factor G C-terminus VF_0529 PF03764 Elongation factor G, domain IV VF_0529 PF00009 Elongation factor Tu GTP binding domain VF_0529 PF14492 Elongation Factor G, domain II VF_0529 PF03144 Elongation factor Tu domain 2 VF_0530 PF09905 DNA-binding protein VF530 VF_0531 PF07969 Amidohydrolase family VF_0532 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VF_0533 PF00501 AMP-binding enzyme VF_0534 PF00488 MutS domain V VF_0534 PF05190 MutS family domain IV VF_0534 PF01624 MutS domain I VF_0534 PF05192 MutS domain III VF_0534 PF05188 MutS domain II VF_0535 PF00154 recA bacterial DNA recombination protein VF_0536 PF01411 tRNA synthetases class II (A) VF_0536 PF02272 DHHA1 domain VF_0536 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VF_0537 PF00696 Amino acid kinase family VF_0537 PF01842 ACT domain VF_0537 PF13840 ACT domain VF_0538 PF02599 Global regulator protein family VF_0539 PF02436 Conserved carboxylase domain VF_0539 PF00364 Biotin-requiring enzyme VF_0539 PF00682 HMGL-like VF_0540 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VF_0541 PF09335 SNARE associated Golgi protein VF_0542 PF00675 Insulinase (Peptidase family M16) VF_0542 PF05193 Peptidase M16 inactive domain VF_0543 PF04262 Glutamate-cysteine ligase VF_0545 PF02664 S-Ribosylhomocysteinase (LuxS) VF_0546 PF03471 Transporter associated domain VF_0546 PF01595 Cyclin M transmembrane N-terminal domain VF_0546 PF00571 CBS domain VF_0547 PF01578 Cytochrome C assembly protein VF_0548 PF00448 SRP54-type protein, GTPase domain VF_0548 PF02978 Signal peptide binding domain VF_0548 PF02881 SRP54-type protein, helical bundle domain VF_0549 PF00886 Ribosomal protein S16 VF_0550 PF01782 RimM N-terminal domain VF_0550 PF05239 PRC-barrel domain VF_0551 PF01746 tRNA (Guanine-1)-methyltransferase VF_0552 PF01245 Ribosomal protein L19 VF_0553 PF00793 DAHP synthetase I family VF_0554 PF01817 Chorismate mutase type II VF_0554 PF02153 Prephenate dehydrogenase VF_0555 PF04225 Opacity-associated protein A LysM-like domain VF_0555 PF01551 Peptidase family M23 VF_0556 PF07238 PilZ domain VF_0557 PF12848 ABC transporter VF_0557 PF00005 ABC transporter VF_0558 PF01464 Transglycosylase SLT domain VF_0558 PF14718 Soluble lytic murein transglycosylase L domain VF_0559 PF01371 Trp repressor protein VF_0560 PF01931 Protein of unknown function DUF84 VF_0561 PF01817 Chorismate mutase type II VF_0561 PF00800 Prephenate dehydratase VF_0562 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VF_0563 PF13525 Outer membrane lipoprotein VF_0564 PF00849 RNA pseudouridylate synthase VF_0564 PF01479 S4 domain VF_0565 PF02578 Multi-copper polyphenol oxidoreductase laccase VF_0566 PF07724 AAA domain (Cdc48 subfamily) VF_0566 PF17871 AAA lid domain VF_0566 PF00004 ATPase family associated with various cellular activities (AAA) VF_0566 PF02861 Clp amino terminal domain, pathogenicity island component VF_0566 PF10431 C-terminal, D2-small domain, of ClpB protein VF_0572 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor VF_0572 PF07963 Prokaryotic N-terminal methylation motif VF_0573 PF02417 Chromate transporter VF_0574 PF03466 LysR substrate binding domain VF_0574 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0576 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VF_0576 PF14602 Hexapeptide repeat of succinyl-transferase VF_0577 PF07130 YebG protein VF_0579 PF03466 LysR substrate binding domain VF_0579 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0581 PF17946 RecC C-terminal domain VF_0582 PF00580 UvrD/REP helicase N-terminal domain VF_0582 PF13361 UvrD-like helicase C-terminal domain VF_0582 PF12705 PD-(D/E)XK nuclease superfamily VF_0583 PF13538 UvrD-like helicase C-terminal domain VF_0584 PF00893 Small Multidrug Resistance protein VF_0585 PF00696 Amino acid kinase family VF_0585 PF00583 Acetyltransferase (GNAT) family VF_0587 PF06725 3D domain VF_0587 PF03562 MltA specific insert domain VF_0588 PF00899 ThiF family VF_0589 PF02657 Fe-S metabolism associated domain VF_0590 PF00266 Aminotransferase class-V VF_0591 PF03466 LysR substrate binding domain VF_0591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0592 PF04241 Protein of unknown function (DUF423) VF_0593 PF18125 RlmM ferredoxin-like domain VF_0593 PF01728 FtsJ-like methyltransferase VF_0594 PF01367 5'-3' exonuclease, C-terminal SAM fold VF_0594 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VF_0595 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VF_0595 PF11892 Domain of unknown function (DUF3412) VF_0595 PF03641 Possible lysine decarboxylase VF_0596 PF00990 Diguanylate cyclase, GGDEF domain VF_0598 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VF_0598 PF14489 QueF-like protein VF_0599 PF07348 Syd protein (SUKH-2) VF_0600 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VF_0601 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VF_0603 PF02378 Phosphotransferase system, EIIC VF_0604 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VF_0605 PF00232 Glycosyl hydrolase family 1 VF_0606 PF00480 ROK family VF_0607 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VF_0608 PF00356 Bacterial regulatory proteins, lacI family VF_0612 PF04287 tRNA pseudouridine synthase C VF_0613 PF00849 RNA pseudouridylate synthase VF_0614 PF00459 Inositol monophosphatase family VF_0615 PF00588 SpoU rRNA Methylase family VF_0616 PF02082 Transcriptional regulator VF_0617 PF00266 Aminotransferase class-V VF_0618 PF01592 NifU-like N terminal domain VF_0619 PF01521 Iron-sulphur cluster biosynthesis VF_0620 PF07743 HSCB C-terminal oligomerisation domain VF_0621 PF00012 Hsp70 protein VF_0622 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_0623 PF04384 Iron-sulphur cluster assembly VF_0624 PF12404 Peptidase VF_0624 PF00883 Cytosol aminopeptidase family, catalytic domain VF_0625 PF00334 Nucleoside diphosphate kinase VF_0626 PF04055 Radical SAM superfamily VF_0628 PF13464 Domain of unknown function (DUF4115) VF_0629 PF04551 GcpE protein VF_0630 PF03129 Anticodon binding domain VF_0630 PF13393 Histidyl-tRNA synthetase VF_0631 PF09976 Tetratricopeptide repeat-like domain VF_0632 PF13360 PQQ-like domain VF_0633 PF01926 50S ribosome-binding GTPase VF_0633 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VF_0636 PF02601 Exonuclease VII, large subunit VF_0636 PF13742 OB-fold nucleic acid binding domain VF_0637 PF00478 IMP dehydrogenase / GMP reductase domain VF_0637 PF00571 CBS domain VF_0638 PF00958 GMP synthase C terminal domain VF_0638 PF00117 Glutamine amidotransferase class-I VF_0638 PF02540 NAD synthase VF_0639 PF03806 AbgT putative transporter family VF_0640 PF13309 HTH domain VF_0640 PF08348 YheO-like PAS domain VF_0641 PF03313 Serine dehydratase alpha chain VF_0642 PF01042 Endoribonuclease L-PSP VF_0644 PF00756 Putative esterase VF_0645 PF08240 Alcohol dehydrogenase GroES-like domain VF_0645 PF00107 Zinc-binding dehydrogenase VF_0646 PF01323 DSBA-like thioredoxin domain VF_0647 PF00375 Sodium:dicarboxylate symporter family VF_0648 PF08240 Alcohol dehydrogenase GroES-like domain VF_0648 PF00107 Zinc-binding dehydrogenase VF_0649 PF03466 LysR substrate binding domain VF_0649 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0650 PF14437 MafB19-like deaminase VF_0651 PF01464 Transglycosylase SLT domain VF_0651 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_0652 PF02769 AIR synthase related protein, C-terminal domain VF_0652 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VF_0652 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VF_0655 PF00704 Glycosyl hydrolases family 18 VF_0656 PF01272 Transcription elongation factor, GreA/GreB, C-term VF_0656 PF03449 Transcription elongation factor, N-terminal VF_0658 PF08443 RimK-like ATP-grasp domain VF_0658 PF18030 RimK PreATP-grasp domain VF_0659 PF18030 RimK PreATP-grasp domain VF_0659 PF08443 RimK-like ATP-grasp domain VF_0660 PF00209 Sodium:neurotransmitter symporter family VF_0662 PF06786 Uncharacterised protein family (UPF0253) VF_0663 PF00701 Dihydrodipicolinate synthetase family VF_0664 PF01380 SIS domain VF_0664 PF01418 Helix-turn-helix domain, rpiR family VF_0665 PF01979 Amidohydrolase family VF_0666 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VF_0667 PF00480 ROK family VF_0668 PF00474 Sodium:solute symporter family VF_0669 PF04074 YhcH/YjgK/YiaL VF_0670 PF02492 CobW/HypB/UreG, nucleotide-binding domain VF_0671 PF01730 UreF VF_0672 PF02814 UreE urease accessory protein, N-terminal domain VF_0672 PF05194 UreE urease accessory protein, C-terminal domain VF_0673 PF01979 Amidohydrolase family VF_0673 PF00449 Urease alpha-subunit, N-terminal domain VF_0674 PF00699 Urease beta subunit VF_0675 PF00547 Urease, gamma subunit VF_0676 PF01774 UreD urease accessory protein VF_0677 PF00005 ABC transporter VF_0678 PF00005 ABC transporter VF_0678 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_0679 PF12911 N-terminal TM domain of oligopeptide transport permease C VF_0679 PF00528 Binding-protein-dependent transport system inner membrane component VF_0680 PF00528 Binding-protein-dependent transport system inner membrane component VF_0681 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_0682 PF03129 Anticodon binding domain VF_0682 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VF_0682 PF04073 Aminoacyl-tRNA editing domain VF_0683 PF01980 tRNA-methyltransferase O VF_0683 PF18389 TrmO C-terminal domain VF_0684 PF03180 NLPA lipoprotein VF_0685 PF00528 Binding-protein-dependent transport system inner membrane component VF_0686 PF09383 NIL domain VF_0686 PF00005 ABC transporter VF_0688 PF00528 Binding-protein-dependent transport system inner membrane component VF_0689 PF00528 Binding-protein-dependent transport system inner membrane component VF_0689 PF12911 N-terminal TM domain of oligopeptide transport permease C VF_0690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_0691 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_0691 PF00005 ABC transporter VF_0692 PF00005 ABC transporter VF_0692 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_0695 PF00464 Serine hydroxymethyltransferase VF_0696 PF13322 Domain of unknown function (DUF4092) VF_0696 PF17291 N-terminal domain of M60-like peptidases VF_0696 PF13402 Peptidase M60, enhancin and enhancin-like VF_0698 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_0698 PF00672 HAMP domain VF_0698 PF02743 Cache domain VF_0699 PF03477 ATP cone domain VF_0700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VF_0700 PF01872 RibD C-terminal domain VF_0701 PF00677 Lumazine binding domain VF_0702 PF00925 GTP cyclohydrolase II VF_0702 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VF_0703 PF00885 6,7-dimethyl-8-ribityllumazine synthase VF_0704 PF01029 NusB family VF_0705 PF02769 AIR synthase related protein, C-terminal domain VF_0705 PF00586 AIR synthase related protein, N-terminal domain VF_0706 PF04608 Phosphatidylglycerophosphatase A VF_0707 PF13407 Periplasmic binding protein domain VF_0708 PF09308 LuxQ, periplasmic VF_0708 PF00072 Response regulator receiver domain VF_0708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0708 PF00512 His Kinase A (phospho-acceptor) domain VF_0711 PF02779 Transketolase, pyrimidine binding domain VF_0711 PF02780 Transketolase, C-terminal domain VF_0711 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VF_0712 PF00348 Polyprenyl synthetase VF_0713 PF02609 Exonuclease VII small subunit VF_0714 PF01618 MotA/TolQ/ExbB proton channel family VF_0715 PF13677 Membrane MotB of proton-channel complex MotA/MotB VF_0715 PF00691 OmpA family VF_0715 PF00691 OmpA family VF_0715 PF13677 Membrane MotB of proton-channel complex MotA/MotB VF_0716 PF02568 Thiamine biosynthesis protein (ThiI) VF_0716 PF02926 THUMP domain VF_0717 PF01965 DJ-1/PfpI family VF_0718 PF08546 Ketopantoate reductase PanE/ApbA C terminal VF_0718 PF02558 Ketopantoate reductase PanE/ApbA VF_0719 PF03502 Nucleoside-specific channel-forming protein, Tsx VF_0720 PF07690 Major Facilitator Superfamily VF_0721 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VF_0723 PF05175 Methyltransferase small domain VF_0724 PF01722 BolA-like protein VF_0725 PF11973 NQRA C-terminal domain VF_0725 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VF_0726 PF03116 NQR2, RnfD, RnfE family VF_0727 PF04205 FMN-binding domain VF_0728 PF02508 Rnf-Nqr subunit, membrane protein VF_0729 PF02508 Rnf-Nqr subunit, membrane protein VF_0731 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_0731 PF00970 Oxidoreductase FAD-binding domain VF_0731 PF00175 Oxidoreductase NAD-binding domain VF_0732 PF02424 ApbE family VF_0734 PF00817 impB/mucB/samB family VF_0734 PF11799 impB/mucB/samB family C-terminal domain VF_0735 PF01168 Alanine racemase, N-terminal domain VF_0735 PF00842 Alanine racemase, C-terminal domain VF_0736 PF07687 Peptidase dimerisation domain VF_0736 PF01546 Peptidase family M20/M25/M40 VF_0737 PF00860 Permease family VF_0738 PF00156 Phosphoribosyl transferase domain VF_0739 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VF_0740 PF01472 PUA domain VF_0740 PF00696 Amino acid kinase family VF_0741 PF00171 Aldehyde dehydrogenase family VF_0742 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VF_0742 PF04055 Radical SAM superfamily VF_0743 PF03099 Biotin/lipoate A/B protein ligase family VF_0744 PF04359 Protein of unknown function (DUF493) VF_0745 PF07943 Penicillin-binding protein 5, C-terminal domain VF_0745 PF00768 D-alanyl-D-alanine carboxypeptidase VF_0746 PF03330 Lytic transglycolase VF_0746 PF05036 Sporulation related domain VF_0747 PF01098 Cell cycle protein VF_0748 PF03717 Penicillin-binding Protein dimerisation domain VF_0748 PF00905 Penicillin binding protein transpeptidase domain VF_0749 PF02590 Predicted SPOUT methyltransferase VF_0751 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VF_0751 PF06144 DNA polymerase III, delta subunit VF_0752 PF04390 Lipopolysaccharide-assembly VF_0753 PF00133 tRNA synthetases class I (I, L, M and V) VF_0753 PF08264 Anticodon-binding domain of tRNA VF_0753 PF13603 Leucyl-tRNA synthetase, Domain 2 VF_0754 PF07295 Zinc-ribbon containing domain VF_0755 PF00795 Carbon-nitrogen hydrolase VF_0756 PF03471 Transporter associated domain VF_0756 PF00571 CBS domain VF_0757 PF02130 Uncharacterized protein family UPF0054 VF_0758 PF02562 PhoH-like protein VF_0759 PF04055 Radical SAM superfamily VF_0759 PF01938 TRAM domain VF_0759 PF00919 Uncharacterized protein family UPF0004 VF_0760 PF01494 FAD binding domain VF_0762 PF06071 Protein of unknown function (DUF933) VF_0762 PF01926 50S ribosome-binding GTPase VF_0763 PF01195 Peptidyl-tRNA hydrolase VF_0764 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VF_0764 PF14572 Phosphoribosyl synthetase-associated domain VF_0765 PF00288 GHMP kinases N terminal domain VF_0765 PF08544 GHMP kinases C terminal VF_0766 PF03550 Outer membrane lipoprotein LolB VF_0767 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VF_0767 PF01488 Shikimate / quinate 5-dehydrogenase VF_0767 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VF_0768 PF00472 RF-1 domain VF_0768 PF03462 PCRF domain VF_0769 PF17827 PrmC N-terminal domain VF_0769 PF13847 Methyltransferase domain VF_0771 PF13369 Transglutaminase-like superfamily VF_0772 PF00793 DAHP synthetase I family VF_0773 PF10414 Sirohaem synthase dimerisation region VF_0773 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VF_0773 PF14824 Sirohaem biosynthesis protein central VF_0775 PF13806 Rieske-like [2Fe-2S] domain VF_0776 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VF_0776 PF18267 Rubredoxin NAD+ reductase C-terminal domain VF_0776 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_0776 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VF_0776 PF04324 BFD-like [2Fe-2S] binding domain VF_0777 PF00672 HAMP domain VF_0777 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_0777 PF17200 Single Cache domain 2 VF_0778 PF00149 Calcineurin-like phosphoesterase VF_0778 PF02872 5'-nucleotidase, C-terminal domain VF_0779 PF01713 Smr domain VF_0781 PF00403 Heavy-metal-associated domain VF_0782 PF13411 MerR HTH family regulatory protein VF_0783 PF00085 Thioredoxin VF_0784 PF00106 short chain dehydrogenase VF_0785 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VF_0786 PF00528 Binding-protein-dependent transport system inner membrane component VF_0787 PF00571 CBS domain VF_0787 PF00005 ABC transporter VF_0788 PF01370 NAD dependent epimerase/dehydratase family VF_0788 PF08338 Domain of unknown function (DUF1731) VF_0789 PF12850 Calcineurin-like phosphoesterase superfamily domain VF_0790 PF17323 Trans-membrane regulatory protein ToxS VF_0791 PF00486 Transcriptional regulatory protein, C terminal VF_0792 PF00183 Hsp90 protein VF_0793 PF05191 Adenylate kinase, active site lid VF_0794 PF00762 Ferrochelatase VF_0795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_0795 PF05697 Bacterial trigger factor protein (TF) VF_0795 PF05698 Bacterial trigger factor protein (TF) C-terminus VF_0796 PF00574 Clp protease VF_0797 PF07724 AAA domain (Cdc48 subfamily) VF_0797 PF10431 C-terminal, D2-small domain, of ClpB protein VF_0797 PF06689 ClpX C4-type zinc finger VF_0798 PF02190 ATP-dependent protease La (LON) substrate-binding domain VF_0798 PF05362 Lon protease (S16) C-terminal proteolytic domain VF_0798 PF00004 ATPase family associated with various cellular activities (AAA) VF_0799 PF00216 Bacterial DNA-binding protein VF_0800 PF13145 PPIC-type PPIASE domain VF_0801 PF10531 SLBB domain VF_0802 PF00854 POT family VF_0803 PF02357 Transcription termination factor nusG VF_0804 PF13537 Glutamine amidotransferase domain VF_0804 PF00733 Asparagine synthase VF_0805 PF02254 TrkA-N domain VF_0805 PF00999 Sodium/hydrogen exchanger family VF_0806 PF01047 MarR family VF_0806 PF00480 ROK family VF_0807 PF01979 Amidohydrolase family VF_0808 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VF_0808 PF00367 phosphotransferase system, EIIB VF_0808 PF02378 Phosphotransferase system, EIIC VF_0809 PF00749 tRNA synthetases class I (E and Q), catalytic domain VF_0809 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VF_0810 PF01475 Ferric uptake regulator family VF_0812 PF00258 Flavodoxin VF_0814 PF00561 alpha/beta hydrolase fold VF_0815 PF17206 SeqA protein N-terminal domain VF_0815 PF03925 SeqA protein C-terminal domain VF_0816 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VF_0816 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VF_0816 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VF_0816 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VF_0817 PF01784 NIF3 (NGG1p interacting factor 3) VF_0818 PF00285 Citrate synthase, C-terminal domain VF_0819 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VF_0820 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VF_0821 PF00890 FAD binding domain VF_0821 PF02910 Fumarate reductase flavoprotein C-term VF_0822 PF13085 2Fe-2S iron-sulfur cluster binding domain VF_0823 PF02779 Transketolase, pyrimidine binding domain VF_0823 PF16870 2-oxoglutarate dehydrogenase C-terminal VF_0823 PF00676 Dehydrogenase E1 component VF_0823 PF16078 2-oxoglutarate dehydrogenase N-terminus VF_0824 PF00364 Biotin-requiring enzyme VF_0824 PF02817 e3 binding domain VF_0824 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VF_0825 PF08442 ATP-grasp domain VF_0825 PF00549 CoA-ligase VF_0826 PF02629 CoA binding domain VF_0826 PF00549 CoA-ligase VF_0827 PF00672 HAMP domain VF_0827 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_0827 PF17200 Single Cache domain 2 VF_0828 PF00950 ABC 3 transport family VF_0829 PF00005 ABC transporter VF_0830 PF01297 Zinc-uptake complex component A periplasmic VF_0831 PF01551 Peptidase family M23 VF_0831 PF01476 LysM domain VF_0831 PF08525 Opacity-associated protein A N-terminal motif VF_0834 PF07670 Nucleoside recognition VF_0834 PF02421 Ferrous iron transport protein B VF_0834 PF07664 Ferrous iron transport protein B C terminus VF_0836 PF01515 Phosphate acetyl/butaryl transferase VF_0836 PF07085 DRTGG domain VF_0837 PF00871 Acetokinase family VF_0838 PF04217 Protein of unknown function, DUF412 VF_0839 PF05746 DALR anticodon binding domain VF_0839 PF00750 tRNA synthetases class I (R) VF_0839 PF03485 Arginyl tRNA synthetase N terminal domain VF_0840 PF06185 YecM protein VF_0841 PF04820 Tryptophan halogenase VF_0846 PF00550 Phosphopantetheine attachment site VF_0847 PF00550 Phosphopantetheine attachment site VF_0849 PF00501 AMP-binding enzyme VF_0849 PF13193 AMP-binding enzyme C-terminal domain VF_0850 PF07977 FabA-like domain VF_0851 PF00535 Glycosyl transferase family 2 VF_0852 PF00221 Aromatic amino acid lyase VF_0857 PF02801 Beta-ketoacyl synthase, C-terminal domain VF_0857 PF00109 Beta-ketoacyl synthase, N-terminal domain VF_0860 PF02801 Beta-ketoacyl synthase, C-terminal domain VF_0860 PF00109 Beta-ketoacyl synthase, N-terminal domain VF_0862 PF01386 Ribosomal L25p family VF_0864 PF04851 Type III restriction enzyme, res subunit VF_0864 PF00271 Helicase conserved C-terminal domain VF_0865 PF13091 PLD-like domain VF_0869 PF09857 Putative toxin of bacterial toxin-antitoxin pair VF_0871 PF00440 Bacterial regulatory proteins, tetR family VF_0872 PF12729 Four helix bundle sensory module for signal transduction VF_0872 PF00672 HAMP domain VF_0872 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_0874 PF02355 Protein export membrane protein VF_0874 PF07549 SecD/SecF GG Motif VF_0875 PF07549 SecD/SecF GG Motif VF_0875 PF02355 Protein export membrane protein VF_0875 PF13721 SecD export protein N-terminal TM region VF_0877 PF03466 LysR substrate binding domain VF_0877 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0878 PF13533 Biotin-lipoyl like VF_0879 PF07690 Major Facilitator Superfamily VF_0880 PF00849 RNA pseudouridylate synthase VF_0880 PF01479 S4 domain VF_0881 PF07690 Major Facilitator Superfamily VF_0883 PF13460 NAD(P)H-binding VF_0883 PF11066 Protein of unknown function (DUF2867) VF_0884 PF00005 ABC transporter VF_0887 PF06965 Na+/H+ antiporter 1 VF_0888 PF07055 Enoyl reductase FAD binding domain VF_0888 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VF_0888 PF12241 Trans-2-enoyl-CoA reductase catalytic region VF_0889 PF02080 TrkA-C domain VF_0889 PF06826 Predicted Permease Membrane Region VF_0890 PF00462 Glutaredoxin VF_0891 PF01380 SIS domain VF_0891 PF01418 Helix-turn-helix domain, rpiR family VF_0892 PF00282 Pyridoxal-dependent decarboxylase conserved domain VF_0894 PF03956 Lysine exporter LysO VF_0896 PF04993 TfoX N-terminal domain VF_0896 PF04994 TfoX C-terminal domain VF_0899 PF00266 Aminotransferase class-V VF_0900 PF00664 ABC transporter transmembrane region VF_0900 PF00005 ABC transporter VF_0901 PF00664 ABC transporter transmembrane region VF_0901 PF00005 ABC transporter VF_0902 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_0903 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VF_0903 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VF_0904 PF01037 Lrp/AsnC ligand binding domain VF_0905 PF17854 FtsK alpha domain VF_0905 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VF_0905 PF09397 Ftsk gamma domain VF_0905 PF01580 FtsK/SpoIIIE family VF_0906 PF03548 Outer membrane lipoprotein carrier protein LolA VF_0907 PF12002 MgsA AAA+ ATPase C terminal VF_0907 PF16193 AAA C-terminal domain VF_0907 PF00004 ATPase family associated with various cellular activities (AAA) VF_0908 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VF_0908 PF02403 Seryl-tRNA synthetase N-terminal domain VF_0909 PF00085 Thioredoxin VF_0910 PF04269 Protein of unknown function, DUF440 VF_0911 PF00294 pfkB family carbohydrate kinase VF_0912 PF01263 Aldose 1-epimerase VF_0913 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VF_0913 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VF_0914 PF01641 SelR domain VF_0916 PF07023 Protein of unknown function (DUF1315) VF_0917 PF00520 Ion transport protein VF_0917 PF00027 Cyclic nucleotide-binding domain VF_0918 PF00465 Iron-containing alcohol dehydrogenase VF_0918 PF00171 Aldehyde dehydrogenase family VF_0921 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VF_0921 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VF_0922 PF00462 Glutaredoxin VF_0924 PF03553 Na+/H+ antiporter family VF_0924 PF13726 Na+-H+ antiporter family VF_0925 PF00929 Exonuclease VF_0926 PF00691 OmpA family VF_0926 PF18393 MotY N-terminal domain VF_0927 PF10952 Protein of unknown function (DUF2753) VF_0928 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VF_0929 PF00730 HhH-GPD superfamily base excision DNA repair protein VF_0929 PF10576 Iron-sulfur binding domain of endonuclease III VF_0929 PF00633 Helix-hairpin-helix motif VF_0930 PF02508 Rnf-Nqr subunit, membrane protein VF_0931 PF04205 FMN-binding domain VF_0932 PF03116 NQR2, RnfD, RnfE family VF_0933 PF12838 4Fe-4S dicluster domain VF_0933 PF10531 SLBB domain VF_0933 PF13375 RnfC Barrel sandwich hybrid domain VF_0933 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VF_0934 PF04060 Putative Fe-S cluster VF_0935 PF02508 Rnf-Nqr subunit, membrane protein VF_0936 PF02151 UvrB/uvrC motif VF_0936 PF17757 UvrB interaction domain VF_0936 PF12344 Ultra-violet resistance protein B VF_0936 PF00271 Helicase conserved C-terminal domain VF_0936 PF04851 Type III restriction enzyme, res subunit VF_0937 PF02954 Bacterial regulatory protein, Fis family VF_0937 PF00158 Sigma-54 interaction domain VF_0937 PF00072 Response regulator receiver domain VF_0938 PF01627 Hpt domain VF_0939 PF01933 Uncharacterised protein family UPF0052 VF_0940 PF04055 Radical SAM superfamily VF_0940 PF06463 Molybdenum Cofactor Synthesis C VF_0941 PF01967 MoaC family VF_0942 PF02597 ThiS family VF_0943 PF02391 MoaE protein VF_0944 PF08443 RimK-like ATP-grasp domain VF_0944 PF18030 RimK PreATP-grasp domain VF_0946 PF18030 RimK PreATP-grasp domain VF_0946 PF08443 RimK-like ATP-grasp domain VF_0947 PF08003 Protein of unknown function (DUF1698) VF_0948 PF13649 Methyltransferase domain VF_0949 PF01336 OB-fold nucleic acid binding domain VF_0949 PF02938 GAD domain VF_0949 PF00152 tRNA synthetases class II (D, K and N) VF_0950 PF02075 Crossover junction endodeoxyribonuclease RuvC VF_0951 PF01330 RuvA N terminal domain VF_0951 PF07499 RuvA, C-terminal domain VF_0952 PF05496 Holliday junction DNA helicase RuvB P-loop domain VF_0952 PF05491 RuvB C-terminal winged helix domain VF_0952 PF17864 RuvB AAA lid domain VF_0953 PF01654 Cytochrome bd terminal oxidase subunit I VF_0954 PF02322 Cytochrome bd terminal oxidase subunit II VF_0955 PF08173 Membrane bound YbgT-like protein VF_0957 PF03061 Thioesterase superfamily VF_0958 PF01618 MotA/TolQ/ExbB proton channel family VF_0959 PF02472 Biopolymer transport protein ExbD/TolR VF_0962 PF04052 TolB amino-terminal domain VF_0962 PF07676 WD40-like Beta Propeller Repeat VF_0963 PF00691 OmpA family VF_0964 PF13174 Tetratricopeptide repeat VF_0964 PF16331 TolA binding protein trimerisation VF_0965 PF02445 Quinolinate synthetase A protein VF_0967 PF06610 L-alanine exporter VF_0968 PF00144 Beta-lactamase VF_0971 PF13167 GTP-binding GTPase N-terminal VF_0971 PF16360 GTP-binding GTPase Middle Region VF_0971 PF01926 50S ribosome-binding GTPase VF_0972 PF04542 Sigma-70 region 2 VF_0972 PF08281 Sigma-70, region 4 VF_0973 PF04262 Glutamate-cysteine ligase VF_0974 PF00664 ABC transporter transmembrane region VF_0974 PF00005 ABC transporter VF_0975 PF00005 ABC transporter VF_0975 PF00664 ABC transporter transmembrane region VF_0978 PF08240 Alcohol dehydrogenase GroES-like domain VF_0978 PF00107 Zinc-binding dehydrogenase VF_0980 PF07690 Major Facilitator Superfamily VF_0982 PF00892 EamA-like transporter family VF_0985 PF00563 EAL domain VF_0985 PF00990 Diguanylate cyclase, GGDEF domain VF_0985 PF03707 Bacterial signalling protein N terminal repeat VF_0986 PF06483 Chitinase C VF_0986 PF00704 Glycosyl hydrolases family 18 VF_0987 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_0987 PF12729 Four helix bundle sensory module for signal transduction VF_0987 PF00672 HAMP domain VF_0989 PF00990 Diguanylate cyclase, GGDEF domain VF_0990 PF00069 Protein kinase domain VF_0990 PF03793 PASTA domain VF_0993 PF06761 Intracellular multiplication and human macrophage-killing VF_0993 PF06744 Type VI secretion protein IcmF C-terminal VF_0993 PF14331 ImcF-related N-terminal domain VF_0995 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE VF_0998 PF00158 Sigma-54 interaction domain VF_0998 PF02954 Bacterial regulatory protein, Fis family VF_0999 PF07724 AAA domain (Cdc48 subfamily) VF_0999 PF10431 C-terminal, D2-small domain, of ClpB protein VF_0999 PF00004 ATPase family associated with various cellular activities (AAA) VF_0999 PF17871 AAA lid domain VF_1003 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath VF_1006 PF10689 Protein of unknown function (DUF2496) VF_1007 PF07445 Primosomal replication protein priC VF_1008 PF01925 Sulfite exporter TauE/SafE VF_1009 PF06733 DEAD_2 VF_1009 PF13307 Helicase C-terminal domain VF_1012 PF08029 HisG, C-terminal domain VF_1012 PF01634 ATP phosphoribosyltransferase VF_1013 PF00815 Histidinol dehydrogenase VF_1014 PF00155 Aminotransferase class I and II VF_1015 PF08645 Polynucleotide kinase 3 phosphatase VF_1015 PF00475 Imidazoleglycerol-phosphate dehydratase VF_1016 PF00117 Glutamine amidotransferase class-I VF_1017 PF00977 Histidine biosynthesis protein VF_1018 PF00977 Histidine biosynthesis protein VF_1019 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VF_1019 PF01502 Phosphoribosyl-AMP cyclohydrolase VF_1020 PF00849 RNA pseudouridylate synthase VF_1021 PF02926 THUMP domain VF_1021 PF10672 S-adenosylmethionine-dependent methyltransferase VF_1021 PF01170 Putative RNA methylase family UPF0020 VF_1023 PF03795 YCII-related domain VF_1024 PF03061 Thioesterase superfamily VF_1025 PF04279 Intracellular septation protein A VF_1026 PF00375 Sodium:dicarboxylate symporter family VF_1027 PF00290 Tryptophan synthase alpha chain VF_1028 PF00291 Pyridoxal-phosphate dependent enzyme VF_1029 PF00218 Indole-3-glycerol phosphate synthase VF_1029 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VF_1031 PF02885 Glycosyl transferase family, helical bundle domain VF_1031 PF00591 Glycosyl transferase family, a/b domain VF_1032 PF00117 Glutamine amidotransferase class-I VF_1033 PF00425 chorismate binding enzyme VF_1033 PF04715 Anthranilate synthase component I, N terminal region VF_1034 PF02811 PHP domain VF_1035 PF01300 Telomere recombination VF_1036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1036 PF00072 Response regulator receiver domain VF_1038 PF00849 RNA pseudouridylate synthase VF_1038 PF01479 S4 domain VF_1039 PF00106 short chain dehydrogenase VF_1040 PF08496 Peptidase family S49 N-terminal VF_1040 PF01343 Peptidase family S49 VF_1049 PF01555 DNA methylase VF_1050 PF10692 Protein of unknown function (DUF2498) VF_1051 PF01131 DNA topoisomerase VF_1051 PF01751 Toprim domain VF_1051 PF01396 Topoisomerase DNA binding C4 zinc finger VF_1051 PF08272 Topoisomerase I zinc-ribbon-like VF_1052 PF00939 Sodium:sulfate symporter transmembrane region VF_1053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1053 PF00512 His Kinase A (phospho-acceptor) domain VF_1053 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_1054 PF00072 Response regulator receiver domain VF_1054 PF02954 Bacterial regulatory protein, Fis family VF_1054 PF00158 Sigma-54 interaction domain VF_1055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VF_1055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VF_1056 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VF_1056 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VF_1056 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VF_1056 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VF_1057 PF01810 LysE type translocator VF_1058 PF01557 Fumarylacetoacetate (FAA) hydrolase family VF_1060 PF01546 Peptidase family M20/M25/M40 VF_1060 PF07687 Peptidase dimerisation domain VF_1061 PF03606 C4-dicarboxylate anaerobic carrier VF_1062 PF00709 Adenylosuccinate synthetase VF_1064 PF00282 Pyridoxal-dependent decarboxylase conserved domain VF_1065 PF06826 Predicted Permease Membrane Region VF_1066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1066 PF03466 LysR substrate binding domain VF_1067 PF07681 DoxX VF_1068 PF05726 Pirin C-terminal cupin domain VF_1068 PF02678 Pirin VF_1072 PF03466 LysR substrate binding domain VF_1072 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1074 PF02311 AraC-like ligand binding domain VF_1074 PF12833 Helix-turn-helix domain VF_1075 PF01810 LysE type translocator VF_1077 PF00069 Protein kinase domain VF_1077 PF03781 Sulfatase-modifying factor enzyme 1 VF_1081 PF00440 Bacterial regulatory proteins, tetR family VF_1082 PF02798 Glutathione S-transferase, N-terminal domain VF_1082 PF00043 Glutathione S-transferase, C-terminal domain VF_1083 PF02798 Glutathione S-transferase, N-terminal domain VF_1084 PF05525 Branched-chain amino acid transport protein VF_1086 PF00072 Response regulator receiver domain VF_1086 PF00486 Transcriptional regulatory protein, C terminal VF_1088 PF03605 Anaerobic c4-dicarboxylate membrane transporter VF_1089 PF16868 NMT1-like family VF_1091 PF00672 HAMP domain VF_1091 PF12729 Four helix bundle sensory module for signal transduction VF_1091 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1092 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1094 PF08241 Methyltransferase domain VF_1095 PF03466 LysR substrate binding domain VF_1095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1096 PF07662 Na+ dependent nucleoside transporter C-terminus VF_1096 PF07670 Nucleoside recognition VF_1096 PF01773 Na+ dependent nucleoside transporter N-terminus VF_1098 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VF_1101 PF01844 HNH endonuclease VF_1103 PF04191 Phospholipid methyltransferase VF_1106 PF00005 ABC transporter VF_1106 PF12704 MacB-like periplasmic core domain VF_1106 PF02687 FtsX-like permease family VF_1107 PF00005 ABC transporter VF_1108 PF00226 DnaJ domain VF_1108 PF01556 DnaJ C terminal domain VF_1108 PF00684 DnaJ central domain VF_1111 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1111 PF03466 LysR substrate binding domain VF_1113 PF01380 SIS domain VF_1113 PF01418 Helix-turn-helix domain, rpiR family VF_1114 PF13580 SIS domain VF_1115 PF02378 Phosphotransferase system, EIIC VF_1115 PF00367 phosphotransferase system, EIIB VF_1117 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1121 PF02028 BCCT, betaine/carnitine/choline family transporter VF_1122 PF00326 Prolyl oligopeptidase family VF_1122 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VF_1124 PF00854 POT family VF_1128 PF02463 RecF/RecN/SMC N terminal domain VF_1132 PF00128 Alpha amylase, catalytic domain VF_1133 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1133 PF12729 Four helix bundle sensory module for signal transduction VF_1133 PF00672 HAMP domain VF_1134 PF01230 HIT domain VF_1137 PF13036 Peptidoglycan-synthase activator LpoB VF_1137 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VF_1138 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1140 PF01209 ubiE/COQ5 methyltransferase family VF_1142 PF05728 Uncharacterised protein family (UPF0227) VF_1143 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_1144 PF00271 Helicase conserved C-terminal domain VF_1144 PF00270 DEAD/DEAH box helicase VF_1147 PF02554 Carbon starvation protein CstA VF_1148 PF00072 Response regulator receiver domain VF_1148 PF04397 LytTr DNA-binding domain VF_1149 PF07694 5TMR of 5TMR-LYT VF_1149 PF06580 Histidine kinase VF_1150 PF01184 GPR1/FUN34/yaaH family VF_1152 PF01435 Peptidase family M48 VF_1155 PF00375 Sodium:dicarboxylate symporter family VF_1156 PF01979 Amidohydrolase family VF_1157 PF01471 Putative peptidoglycan binding domain VF_1157 PF03734 L,D-transpeptidase catalytic domain VF_1158 PF05951 Bacterial protein of unknown function (DUF882) VF_1159 PF00152 tRNA synthetases class II (D, K and N) VF_1159 PF01336 OB-fold nucleic acid binding domain VF_1160 PF01242 6-pyruvoyl tetrahydropterin synthase VF_1163 PF12704 MacB-like periplasmic core domain VF_1163 PF00005 ABC transporter VF_1163 PF02687 FtsX-like permease family VF_1164 PF00005 ABC transporter VF_1164 PF12704 MacB-like periplasmic core domain VF_1164 PF02687 FtsX-like permease family VF_1165 PF12704 MacB-like periplasmic core domain VF_1165 PF02687 FtsX-like permease family VF_1165 PF00005 ABC transporter VF_1167 PF00149 Calcineurin-like phosphoesterase VF_1167 PF12320 Type 5 capsule protein repressor C-terminal domain VF_1168 PF13476 AAA domain VF_1171 PF03222 Tryptophan/tyrosine permease family VF_1172 PF03222 Tryptophan/tyrosine permease family VF_1176 PF03315 Serine dehydratase beta chain VF_1176 PF03313 Serine dehydratase alpha chain VF_1177 PF03222 Tryptophan/tyrosine permease family VF_1178 PF00293 NUDIX domain VF_1179 PF00425 chorismate binding enzyme VF_1179 PF04715 Anthranilate synthase component I, N terminal region VF_1182 PF13533 Biotin-lipoyl like VF_1183 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_1184 PF00873 AcrB/AcrD/AcrF family VF_1186 PF01053 Cys/Met metabolism PLP-dependent enzyme VF_1188 PF00465 Iron-containing alcohol dehydrogenase VF_1189 PF00925 GTP cyclohydrolase II VF_1194 PF00753 Metallo-beta-lactamase superfamily VF_1197 PF03222 Tryptophan/tyrosine permease family VF_1198 PF00994 Probable molybdopterin binding domain VF_1200 PF00990 Diguanylate cyclase, GGDEF domain VF_1201 PF00268 Ribonucleotide reductase, small chain VF_1202 PF03477 ATP cone domain VF_1202 PF02867 Ribonucleotide reductase, barrel domain VF_1202 PF00317 Ribonucleotide reductase, all-alpha domain VF_1204 PF00521 DNA gyrase/topoisomerase IV, subunit A VF_1204 PF03989 DNA gyrase C-terminal domain, beta-propeller VF_1207 PF00012 Hsp70 protein VF_1208 PF04266 ASCH domain VF_1210 PF07070 SpoOM protein VF_1212 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VF_1214 PF03129 Anticodon binding domain VF_1214 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VF_1214 PF02824 TGS domain VF_1214 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VF_1216 PF05198 Translation initiation factor IF-3, N-terminal domain VF_1216 PF00707 Translation initiation factor IF-3, C-terminal domain VF_1217 PF01632 Ribosomal protein L35 VF_1218 PF00453 Ribosomal protein L20 VF_1220 PF00005 ABC transporter VF_1221 PF01032 FecCD transport family VF_1222 PF01497 Periplasmic binding protein VF_1223 PF02472 Biopolymer transport protein ExbD/TolR VF_1224 PF01618 MotA/TolQ/ExbB proton channel family VF_1225 PF03544 Gram-negative bacterial TonB protein C-terminal VF_1226 PF04055 Radical SAM superfamily VF_1227 PF06228 Haem utilisation ChuX/HutX VF_1228 PF01243 Pyridoxamine 5'-phosphate oxidase VF_1229 PF04717 Type VI secretion system, phage-baseplate injector VF_1230 PF13503 Domain of unknown function (DUF4123) VF_1234 PF07715 TonB-dependent Receptor Plug Domain VF_1234 PF00593 TonB dependent receptor VF_1235 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VF_1235 PF01409 tRNA synthetases class II core domain (F) VF_1236 PF01588 Putative tRNA binding domain VF_1236 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VF_1236 PF03147 Ferredoxin-fold anticodon binding domain VF_1236 PF03484 tRNA synthetase B5 domain VF_1236 PF03483 B3/4 domain VF_1237 PF00216 Bacterial DNA-binding protein VF_1238 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VF_1240 PF04461 Protein of unknown function (DUF520) VF_1241 PF00793 DAHP synthetase I family VF_1242 PF00391 PEP-utilising enzyme, mobile domain VF_1242 PF02896 PEP-utilising enzyme, TIM barrel domain VF_1242 PF05524 PEP-utilising enzyme, N-terminal VF_1245 PF00990 Diguanylate cyclase, GGDEF domain VF_1245 PF17158 Membrane-associated sensor, integral membrane domain VF_1246 PF01278 Omptin family VF_1250 PF03606 C4-dicarboxylate anaerobic carrier VF_1252 PF02615 Malate/L-lactate dehydrogenase VF_1253 PF00155 Aminotransferase class I and II VF_1254 PF03553 Na+/H+ antiporter family VF_1255 PF00356 Bacterial regulatory proteins, lacI family VF_1256 PF02112 cAMP phosphodiesterases class-II VF_1258 PF03061 Thioesterase superfamily VF_1260 PF00440 Bacterial regulatory proteins, tetR family VF_1261 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VF_1262 PF00462 Glutaredoxin VF_1264 PF01979 Amidohydrolase family VF_1266 PF01554 MatE VF_1269 PF01726 LexA DNA binding domain VF_1269 PF00717 Peptidase S24-like VF_1270 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_1272 PF08207 Elongation factor P (EF-P) KOW-like domain VF_1272 PF09285 Elongation factor P, C-terminal VF_1272 PF01132 Elongation factor P (EF-P) OB domain VF_1274 PF01189 16S rRNA methyltransferase RsmB/F VF_1274 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VF_1274 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VF_1275 PF02470 MlaD protein VF_1276 PF04403 Paraquat-inducible protein A VF_1277 PF00005 ABC transporter VF_1277 PF00664 ABC transporter transmembrane region VF_1278 PF13185 GAF domain VF_1279 PF04352 ProQ/FINO family VF_1279 PF17516 ProQ C-terminal domain VF_1280 PF17804 Tail specific protease N-terminal domain VF_1280 PF11818 C-terminal domain of tail specific protease (DUF3340) VF_1280 PF00595 PDZ domain VF_1280 PF03572 Peptidase family S41 VF_1282 PF11940 Domain of unknown function (DUF3458) Ig-like fold VF_1282 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VF_1282 PF01433 Peptidase family M1 domain VF_1284 PF05088 Bacterial NAD-glutamate dehydrogenase VF_1285 PF01180 Dihydroorotate dehydrogenase VF_1286 PF07126 Cell-division protein ZapC VF_1287 PF10672 S-adenosylmethionine-dependent methyltransferase VF_1287 PF02926 THUMP domain VF_1287 PF01170 Putative RNA methylase family UPF0020 VF_1289 PF00005 ABC transporter VF_1289 PF16326 ABC transporter C-terminal domain VF_1289 PF12848 ABC transporter VF_1291 PF04957 Ribosome modulation factor VF_1292 PF07977 FabA-like domain VF_1293 PF05362 Lon protease (S16) C-terminal proteolytic domain VF_1293 PF13654 AAA domain VF_1294 PF06303 MatP N-terminal domain VF_1294 PF17414 MatP C-terminal ribbon-helix-helix domain VF_1296 PF09308 LuxQ, periplasmic VF_1296 PF00072 Response regulator receiver domain VF_1296 PF00512 His Kinase A (phospho-acceptor) domain VF_1296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1299 PF00115 Cytochrome C and Quinol oxidase polypeptide I VF_1302 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VF_1302 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VF_1304 PF00403 Heavy-metal-associated domain VF_1308 PF00027 Cyclic nucleotide-binding domain VF_1308 PF13545 Crp-like helix-turn-helix domain VF_1310 PF00582 Universal stress protein family VF_1311 PF01171 PP-loop family VF_1315 PF00005 ABC transporter VF_1315 PF08402 TOBE domain VF_1316 PF00528 Binding-protein-dependent transport system inner membrane component VF_1317 PF00528 Binding-protein-dependent transport system inner membrane component VF_1318 PF13416 Bacterial extracellular solute-binding protein VF_1319 PF13416 Bacterial extracellular solute-binding protein VF_1320 PF02146 Sir2 family VF_1321 PF03466 LysR substrate binding domain VF_1321 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1322 PF07670 Nucleoside recognition VF_1322 PF07662 Na+ dependent nucleoside transporter C-terminus VF_1322 PF01773 Na+ dependent nucleoside transporter N-terminus VF_1324 PF13599 Pentapeptide repeats (9 copies) VF_1326 PF00132 Bacterial transferase hexapeptide (six repeats) VF_1326 PF12464 Maltose acetyltransferase VF_1329 PF01464 Transglycosylase SLT domain VF_1329 PF14718 Soluble lytic murein transglycosylase L domain VF_1332 PF01554 MatE VF_1333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1333 PF03466 LysR substrate binding domain VF_1335 PF01966 HD domain VF_1337 PF00132 Bacterial transferase hexapeptide (six repeats) VF_1337 PF12464 Maltose acetyltransferase VF_1338 PF01810 LysE type translocator VF_1341 PF04794 YdjC-like protein VF_1344 PF13673 Acetyltransferase (GNAT) domain VF_1345 PF13302 Acetyltransferase (GNAT) domain VF_1347 PF03831 PhnA domain VF_1347 PF08274 PhnA Zinc-Ribbon VF_1349 PF00082 Subtilase family VF_1349 PF05922 Peptidase inhibitor I9 VF_1350 PF00990 Diguanylate cyclase, GGDEF domain VF_1352 PF13344 Haloacid dehalogenase-like hydrolase VF_1352 PF00293 NUDIX domain VF_1353 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VF_1359 PF13247 4Fe-4S dicluster domain VF_1360 PF00384 Molybdopterin oxidoreductase VF_1360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VF_1360 PF01568 Molydopterin dinucleotide binding domain VF_1366 PF02634 FdhD/NarQ family VF_1367 PF11849 Domain of unknown function (DUF3369) VF_1368 PF01464 Transglycosylase SLT domain VF_1368 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VF_1369 PF00672 HAMP domain VF_1369 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1369 PF02743 Cache domain VF_1370 PF01470 Pyroglutamyl peptidase VF_1373 PF01566 Natural resistance-associated macrophage protein VF_1374 PF02626 Carboxyltransferase domain, subdomain A and B VF_1375 PF02682 Carboxyltransferase domain, subdomain C and D VF_1376 PF03746 LamB/YcsF family VF_1377 PF07286 Protein of unknown function (DUF1445) VF_1378 PF03466 LysR substrate binding domain VF_1378 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1380 PF11954 Domain of unknown function (DUF3471) VF_1380 PF00144 Beta-lactamase VF_1383 PF01136 Peptidase family U32 VF_1383 PF12392 Collagenase VF_1387 PF00581 Rhodanese-like domain VF_1390 PF06483 Chitinase C VF_1390 PF00704 Glycosyl hydrolases family 18 VF_1394 PF02028 BCCT, betaine/carnitine/choline family transporter VF_1396 PF00486 Transcriptional regulatory protein, C terminal VF_1396 PF00072 Response regulator receiver domain VF_1397 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1399 PF00535 Glycosyl transferase family 2 VF_1400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1400 PF00512 His Kinase A (phospho-acceptor) domain VF_1400 PF00989 PAS fold VF_1401 PF02954 Bacterial regulatory protein, Fis family VF_1401 PF00072 Response regulator receiver domain VF_1401 PF00158 Sigma-54 interaction domain VF_1402 PF12849 PBP superfamily domain VF_1403 PF00528 Binding-protein-dependent transport system inner membrane component VF_1404 PF08402 TOBE domain VF_1404 PF00005 ABC transporter VF_1405 PF12804 MobA-like NTP transferase domain VF_1406 PF03454 MoeA C-terminal region (domain IV) VF_1406 PF00994 Probable molybdopterin binding domain VF_1406 PF03453 MoeA N-terminal region (domain I and II) VF_1407 PF07516 SecA Wing and Scaffold domain VF_1407 PF01043 SecA preprotein cross-linking domain VF_1407 PF07517 SecA DEAD-like domain VF_1407 PF02810 SEC-C motif VF_1408 PF00480 ROK family VF_1409 PF03942 DTW domain VF_1410 PF03806 AbgT putative transporter family VF_1411 PF00877 NlpC/P60 family VF_1413 PF03881 Fructosamine kinase VF_1414 PF00677 Lumazine binding domain VF_1415 PF01554 MatE VF_1417 PF13186 Iron-sulfur cluster-binding domain VF_1417 PF04055 Radical SAM superfamily VF_1418 PF03781 Sulfatase-modifying factor enzyme 1 VF_1419 PF03466 LysR substrate binding domain VF_1419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1425 PF17863 AAA lid domain VF_1425 PF07726 ATPase family associated with various cellular activities (AAA) VF_1427 PF00884 Sulfatase VF_1428 PF00884 Sulfatase VF_1430 PF00884 Sulfatase VF_1432 PF02001 Protein of unknown function DUF134 VF_1439 PF00270 DEAD/DEAH box helicase VF_1439 PF00271 Helicase conserved C-terminal domain VF_1444 PF05025 RbsD / FucU transport protein family VF_1445 PF00005 ABC transporter VF_1446 PF02653 Branched-chain amino acid transport system / permease component VF_1447 PF13407 Periplasmic binding protein domain VF_1448 PF00294 pfkB family carbohydrate kinase VF_1449 PF00356 Bacterial regulatory proteins, lacI family VF_1450 PF01068 ATP dependent DNA ligase domain VF_1450 PF14743 DNA ligase OB-like domain VF_1452 PF01554 MatE VF_1454 PF01235 Sodium:alanine symporter family VF_1455 PF00924 Mechanosensitive ion channel VF_1455 PF05552 Conserved TM helix VF_1456 PF01810 LysE type translocator VF_1457 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VF_1458 PF00291 Pyridoxal-phosphate dependent enzyme VF_1459 PF01042 Endoribonuclease L-PSP VF_1460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1460 PF03466 LysR substrate binding domain VF_1464 PF13361 UvrD-like helicase C-terminal domain VF_1464 PF00580 UvrD/REP helicase N-terminal domain VF_1464 PF12462 DNA helicase IV / RNA helicase N terminal VF_1465 PF13361 UvrD-like helicase C-terminal domain VF_1465 PF00580 UvrD/REP helicase N-terminal domain VF_1465 PF12462 DNA helicase IV / RNA helicase N terminal VF_1466 PF00011 Hsp20/alpha crystallin family VF_1467 PF00012 Hsp70 protein VF_1469 PF01381 Helix-turn-helix VF_1470 PF13657 HipA N-terminal domain VF_1470 PF07804 HipA-like C-terminal domain VF_1471 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VF_1476 PF07969 Amidohydrolase family VF_1477 PF00226 DnaJ domain VF_1477 PF01556 DnaJ C terminal domain VF_1477 PF00684 DnaJ central domain VF_1479 PF00230 Major intrinsic protein VF_1481 PF03717 Penicillin-binding Protein dimerisation domain VF_1481 PF00905 Penicillin binding protein transpeptidase domain VF_1482 PF00929 Exonuclease VF_1482 PF08411 Exonuclease C-terminal VF_1483 PF03788 LrgA family VF_1484 PF04172 LrgB-like family VF_1485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VF_1485 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VF_1486 PF01425 Amidase VF_1487 PF02222 ATP-grasp domain VF_1487 PF01370 NAD dependent epimerase/dehydratase family VF_1488 PF00155 Aminotransferase class I and II VF_1490 PF03466 LysR substrate binding domain VF_1490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1492 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VF_1496 PF00462 Glutaredoxin VF_1498 PF01259 SAICAR synthetase VF_1500 PF00271 Helicase conserved C-terminal domain VF_1500 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VF_1500 PF00270 DEAD/DEAH box helicase VF_1500 PF11898 Domain of unknown function (DUF3418) VF_1500 PF04408 Helicase associated domain (HA2) VF_1501 PF04358 DsrC like protein VF_1502 PF00708 Acylphosphatase VF_1503 PF00672 HAMP domain VF_1503 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1504 PF12729 Four helix bundle sensory module for signal transduction VF_1504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1504 PF00672 HAMP domain VF_1505 PF17785 PUA-like domain VF_1505 PF10672 S-adenosylmethionine-dependent methyltransferase VF_1508 PF03606 C4-dicarboxylate anaerobic carrier VF_1509 PF01979 Amidohydrolase family VF_1511 PF02872 5'-nucleotidase, C-terminal domain VF_1511 PF00149 Calcineurin-like phosphoesterase VF_1512 PF05724 Thiopurine S-methyltransferase (TPMT) VF_1513 PF00375 Sodium:dicarboxylate symporter family VF_1515 PF00990 Diguanylate cyclase, GGDEF domain VF_1517 PF00012 Hsp70 protein VF_1518 PF00012 Hsp70 protein VF_1521 PF01048 Phosphorylase superfamily VF_1522 PF00403 Heavy-metal-associated domain VF_1523 PF00571 CBS domain VF_1523 PF01368 DHH family VF_1523 PF02272 DHHA1 domain VF_1523 PF01743 Poly A polymerase head domain VF_1525 PF13183 4Fe-4S dicluster domain VF_1525 PF01565 FAD binding domain VF_1525 PF02913 FAD linked oxidases, C-terminal domain VF_1527 PF17763 Glutaminase/Asparaginase C-terminal domain VF_1527 PF00710 Asparaginase, N-terminal VF_1530 PF00392 Bacterial regulatory proteins, gntR family VF_1530 PF07702 UTRA domain VF_1531 PF14824 Sirohaem biosynthesis protein central VF_1531 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VF_1531 PF10414 Sirohaem synthase dimerisation region VF_1532 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_1533 PF00528 Binding-protein-dependent transport system inner membrane component VF_1534 PF00528 Binding-protein-dependent transport system inner membrane component VF_1535 PF00005 ABC transporter VF_1536 PF01027 Inhibitor of apoptosis-promoting Bax1 VF_1543 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VF_1544 PF01569 PAP2 superfamily VF_1545 PF03466 LysR substrate binding domain VF_1545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1546 PF03605 Anaerobic c4-dicarboxylate membrane transporter VF_1547 PF01177 Asp/Glu/Hydantoin racemase VF_1548 PF03918 Cytochrome C biogenesis protein VF_1549 PF08534 Redoxin VF_1550 PF01578 Cytochrome C assembly protein VF_1550 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VF_1551 PF03916 Polysulphide reductase, NrfD VF_1552 PF13247 4Fe-4S dicluster domain VF_1554 PF02335 Cytochrome c552 VF_1556 PF02253 Phospholipase A1 VF_1557 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VF_1557 PF00271 Helicase conserved C-terminal domain VF_1557 PF04408 Helicase associated domain (HA2) VF_1557 PF00270 DEAD/DEAH box helicase VF_1557 PF11898 Domain of unknown function (DUF3418) VF_1558 PF00390 Malic enzyme, N-terminal domain VF_1558 PF03949 Malic enzyme, NAD binding domain VF_1560 PF02698 DUF218 domain VF_1561 PF08448 PAS fold VF_1561 PF00990 Diguanylate cyclase, GGDEF domain VF_1565 PF12558 ATP-binding cassette cobalt transporter VF_1565 PF00005 ABC transporter VF_1566 PF07155 ECF-type riboflavin transporter, S component VF_1568 PF01479 S4 domain VF_1568 PF00849 RNA pseudouridylate synthase VF_1570 PF00486 Transcriptional regulatory protein, C terminal VF_1570 PF00072 Response regulator receiver domain VF_1571 PF02613 Nitrate reductase delta subunit VF_1572 PF00356 Bacterial regulatory proteins, lacI family VF_1573 PF04994 TfoX C-terminal domain VF_1573 PF04993 TfoX N-terminal domain VF_1575 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VF_1576 PF09619 Type III secretion system lipoprotein chaperone (YscW) VF_1578 PF13404 AsnC-type helix-turn-helix domain VF_1578 PF01037 Lrp/AsnC ligand binding domain VF_1579 PF00291 Pyridoxal-phosphate dependent enzyme VF_1580 PF06508 Queuosine biosynthesis protein QueC VF_1581 PF00873 AcrB/AcrD/AcrF family VF_1582 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_1583 PF03372 Endonuclease/Exonuclease/phosphatase family VF_1584 PF13417 Glutathione S-transferase, N-terminal domain VF_1584 PF04399 Glutaredoxin 2, C terminal domain VF_1585 PF00528 Binding-protein-dependent transport system inner membrane component VF_1586 PF00528 Binding-protein-dependent transport system inner membrane component VF_1587 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_1588 PF00005 ABC transporter VF_1590 PF01228 Glycine radical VF_1590 PF02901 Pyruvate formate lyase-like VF_1591 PF04055 Radical SAM superfamily VF_1592 PF08007 Cupin superfamily protein VF_1593 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_1593 PF00005 ABC transporter VF_1594 PF00005 ABC transporter VF_1594 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_1595 PF00528 Binding-protein-dependent transport system inner membrane component VF_1595 PF12911 N-terminal TM domain of oligopeptide transport permease C VF_1596 PF00528 Binding-protein-dependent transport system inner membrane component VF_1597 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_1598 PF08329 Chitinase A, N-terminal domain VF_1598 PF00704 Glycosyl hydrolases family 18 VF_1599 PF00265 Thymidine kinase VF_1600 PF01406 tRNA synthetases class I (C) catalytic domain VF_1600 PF09190 DALR domain VF_1601 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VF_1602 PF00149 Calcineurin-like phosphoesterase VF_1603 PF00563 EAL domain VF_1603 PF08668 HDOD domain VF_1604 PF02810 SEC-C motif VF_1605 PF00209 Sodium:neurotransmitter symporter family VF_1606 PF13396 Phospholipase_D-nuclease N-terminal VF_1606 PF13091 PLD-like domain VF_1607 PF01227 GTP cyclohydrolase I VF_1608 PF03454 MoeA C-terminal region (domain IV) VF_1608 PF00994 Probable molybdopterin binding domain VF_1608 PF03453 MoeA N-terminal region (domain I and II) VF_1609 PF00899 ThiF family VF_1610 PF12849 PBP superfamily domain VF_1611 PF00528 Binding-protein-dependent transport system inner membrane component VF_1612 PF00528 Binding-protein-dependent transport system inner membrane component VF_1613 PF00005 ABC transporter VF_1616 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VF_1618 PF12729 Four helix bundle sensory module for signal transduction VF_1618 PF00672 HAMP domain VF_1618 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1619 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1619 PF01627 Hpt domain VF_1619 PF00989 PAS fold VF_1619 PF00072 Response regulator receiver domain VF_1619 PF18415 Histidine kinase receptor ArcB trans-membrane domain VF_1619 PF00512 His Kinase A (phospho-acceptor) domain VF_1620 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VF_1621 PF02142 MGS-like domain VF_1622 PF12462 DNA helicase IV / RNA helicase N terminal VF_1622 PF00580 UvrD/REP helicase N-terminal domain VF_1622 PF13361 UvrD-like helicase C-terminal domain VF_1623 PF12805 FUSC-like inner membrane protein yccS VF_1625 PF01066 CDP-alcohol phosphatidyltransferase VF_1626 PF01541 GIY-YIG catalytic domain VF_1626 PF08459 UvrC Helix-hairpin-helix N-terminal VF_1626 PF02151 UvrB/uvrC motif VF_1627 PF00196 Bacterial regulatory proteins, luxR family VF_1627 PF00072 Response regulator receiver domain VF_1628 PF00136 DNA polymerase family B VF_1628 PF03104 DNA polymerase family B, exonuclease domain VF_1630 PF03553 Na+/H+ antiporter family VF_1631 PF00816 H-NS histone family VF_1632 PF06629 MltA-interacting protein MipA VF_1633 PF07840 FadR C-terminal domain VF_1633 PF00392 Bacterial regulatory proteins, gntR family VF_1634 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VF_1635 PF02600 Disulfide bond formation protein DsbB VF_1636 PF07516 SecA Wing and Scaffold domain VF_1636 PF02810 SEC-C motif VF_1636 PF01043 SecA preprotein cross-linking domain VF_1636 PF07517 SecA DEAD-like domain VF_1638 PF01207 Dihydrouridine synthase (Dus) VF_1639 PF00990 Diguanylate cyclase, GGDEF domain VF_1639 PF05230 MASE2 domain VF_1641 PF01131 DNA topoisomerase VF_1641 PF01751 Toprim domain VF_1642 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VF_1642 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_1643 PF01343 Peptidase family S49 VF_1644 PF17763 Glutaminase/Asparaginase C-terminal domain VF_1644 PF00710 Asparaginase, N-terminal VF_1645 PF01118 Semialdehyde dehydrogenase, NAD binding domain VF_1645 PF02774 Semialdehyde dehydrogenase, dimerisation domain VF_1646 PF03553 Na+/H+ antiporter family VF_1648 PF04245 37-kD nucleoid-associated bacterial protein VF_1649 PF07208 Protein of unknown function (DUF1414) VF_1650 PF00884 Sulfatase VF_1650 PF11893 Domain of unknown function (DUF3413) VF_1651 PF00194 Eukaryotic-type carbonic anhydrase VF_1652 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1653 PF01048 Phosphorylase superfamily VF_1658 PF00106 short chain dehydrogenase VF_1660 PF03692 Putative zinc- or iron-chelating domain VF_1661 PF03692 Putative zinc- or iron-chelating domain VF_1666 PF00501 AMP-binding enzyme VF_1666 PF13193 AMP-binding enzyme C-terminal domain VF_1667 PF13378 Enolase C-terminal domain-like VF_1669 PF00378 Enoyl-CoA hydratase/isomerase VF_1670 PF12697 Alpha/beta hydrolase family VF_1671 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VF_1671 PF16582 Middle domain of thiamine pyrophosphate VF_1671 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VF_1672 PF00425 chorismate binding enzyme VF_1673 PF00155 Aminotransferase class I and II VF_1674 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_1674 PF12793 Sugar transport-related sRNA regulator N-term VF_1675 PF01872 RibD C-terminal domain VF_1677 PF12833 Helix-turn-helix domain VF_1677 PF06719 AraC-type transcriptional regulator N-terminus VF_1678 PF00465 Iron-containing alcohol dehydrogenase VF_1680 PF00892 EamA-like transporter family VF_1681 PF00171 Aldehyde dehydrogenase family VF_1682 PF13286 Phosphohydrolase-associated domain VF_1682 PF01966 HD domain VF_1685 PF02132 RecR protein VF_1685 PF13662 Toprim domain VF_1686 PF02575 YbaB/EbfC DNA-binding family VF_1687 PF12170 DNA polymerase III tau subunit V interacting with alpha VF_1687 PF12169 DNA polymerase III subunits gamma and tau domain III VF_1688 PF00156 Phosphoribosyl transferase domain VF_1689 PF00072 Response regulator receiver domain VF_1690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1690 PF03466 LysR substrate binding domain VF_1691 PF00156 Phosphoribosyl transferase domain VF_1692 PF02674 Colicin V production protein VF_1693 PF05036 Sporulation related domain VF_1694 PF02875 Mur ligase family, glutamate ligase domain VF_1694 PF08245 Mur ligase middle domain VF_1695 PF17848 Acetyl-coA carboxylase zinc finger domain VF_1695 PF01039 Carboxyl transferase domain VF_1696 PF01416 tRNA pseudouridine synthase VF_1698 PF01118 Semialdehyde dehydrogenase, NAD binding domain VF_1698 PF02774 Semialdehyde dehydrogenase, dimerisation domain VF_1699 PF11890 Domain of unknown function (DUF3410) VF_1699 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VF_1699 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VF_1700 PF02801 Beta-ketoacyl synthase, C-terminal domain VF_1700 PF00109 Beta-ketoacyl synthase, N-terminal domain VF_1701 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VF_1701 PF01266 FAD dependent oxidoreductase VF_1702 PF13406 Transglycosylase SLT domain VF_1703 PF05166 YcgL domain VF_1704 PF03775 Septum formation inhibitor MinC, C-terminal domain VF_1704 PF05209 Septum formation inhibitor MinC, N-terminal domain VF_1705 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VF_1706 PF03776 Septum formation topological specificity factor MinE VF_1707 PF01612 3'-5' exonuclease VF_1707 PF00570 HRDC domain VF_1708 PF00501 AMP-binding enzyme VF_1708 PF13193 AMP-binding enzyme C-terminal domain VF_1709 PF00561 alpha/beta hydrolase fold VF_1710 PF03843 Outer membrane lipoprotein Slp family VF_1712 PF00814 Glycoprotease family VF_1713 PF13307 Helicase C-terminal domain VF_1713 PF04851 Type III restriction enzyme, res subunit VF_1714 PF01842 ACT domain VF_1714 PF00551 Formyl transferase VF_1715 PF00561 alpha/beta hydrolase fold VF_1716 PF12833 Helix-turn-helix domain VF_1716 PF02311 AraC-like ligand binding domain VF_1717 PF00892 EamA-like transporter family VF_1718 PF00155 Aminotransferase class I and II VF_1719 PF00367 phosphotransferase system, EIIB VF_1719 PF02378 Phosphotransferase system, EIIC VF_1720 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VF_1720 PF00356 Bacterial regulatory proteins, lacI family VF_1721 PF08267 Cobalamin-independent synthase, N-terminal domain VF_1721 PF01717 Cobalamin-independent synthase, Catalytic domain VF_1722 PF03466 LysR substrate binding domain VF_1722 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1724 PF03606 C4-dicarboxylate anaerobic carrier VF_1725 PF00561 alpha/beta hydrolase fold VF_1726 PF04055 Radical SAM superfamily VF_1726 PF08497 Radical SAM N-terminal VF_1726 PF11842 Domain of unknown function (DUF3362) VF_1727 PF00579 tRNA synthetases class I (W and Y) VF_1730 PF00209 Sodium:neurotransmitter symporter family VF_1732 PF00367 phosphotransferase system, EIIB VF_1732 PF02378 Phosphotransferase system, EIIC VF_1733 PF01026 TatD related DNase VF_1734 PF09115 DNA polymerase III, delta subunit, C terminal VF_1735 PF02223 Thymidylate kinase VF_1736 PF02618 YceG-like family VF_1737 PF01063 Amino-transferase class IV VF_1738 PF02801 Beta-ketoacyl synthase, C-terminal domain VF_1738 PF00109 Beta-ketoacyl synthase, N-terminal domain VF_1739 PF00550 Phosphopantetheine attachment site VF_1741 PF00698 Acyl transferase domain VF_1742 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VF_1742 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VF_1743 PF02504 Fatty acid synthesis protein VF_1744 PF01783 Ribosomal L32p protein family VF_1745 PF02620 Large ribosomal RNA subunit accumulation protein YceD VF_1746 PF02545 Maf-like protein VF_1747 PF01479 S4 domain VF_1747 PF00849 RNA pseudouridylate synthase VF_1748 PF00575 S1 RNA binding domain VF_1748 PF10150 Ribonuclease E/G family VF_1748 PF12111 Polyribonucleotide phosphorylase C terminal VF_1749 PF01740 STAS domain VF_1749 PF00916 Sulfate permease family VF_1750 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VF_1750 PF12557 Cob(I)alamin adenosyltransferase N terminal VF_1752 PF00485 Phosphoribulokinase / Uridine kinase family VF_1753 PF10609 NUBPL iron-transfer P-loop NTPase VF_1754 PF01588 Putative tRNA binding domain VF_1754 PF09334 tRNA synthetases class I (M) VF_1755 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VF_1756 PF18073 Rubredoxin metal binding domain VF_1757 PF06305 Lipopolysaccharide assembly protein A domain VF_1758 PF00216 Bacterial DNA-binding protein VF_1759 PF00575 S1 RNA binding domain VF_1760 PF02224 Cytidylate kinase VF_1761 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VF_1762 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VF_1763 PF04377 Arginine-tRNA-protein transferase, C terminus VF_1763 PF04376 Arginine-tRNA-protein transferase, N terminus VF_1764 PF01176 Translation initiation factor 1A / IF-1 VF_1765 PF00004 ATPase family associated with various cellular activities (AAA) VF_1765 PF07724 AAA domain (Cdc48 subfamily) VF_1765 PF17871 AAA lid domain VF_1765 PF10431 C-terminal, D2-small domain, of ClpB protein VF_1765 PF02861 Clp amino terminal domain, pathogenicity island component VF_1766 PF02617 ATP-dependent Clp protease adaptor protein ClpS VF_1767 PF00313 'Cold-shock' DNA-binding domain VF_1769 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VF_1770 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VF_1770 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VF_1771 PF08298 PrkA AAA domain VF_1771 PF06798 PrkA serine protein kinase C-terminal domain VF_1773 PF04285 Protein of unknown function (DUF444) VF_1774 PF04293 SpoVR like protein VF_1775 PF03971 Monomeric isocitrate dehydrogenase VF_1776 PF00849 RNA pseudouridylate synthase VF_1778 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1780 PF00175 Oxidoreductase NAD-binding domain VF_1780 PF00970 Oxidoreductase FAD-binding domain VF_1781 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_1781 PF18113 Rubredoxin binding C-terminal domain VF_1782 PF00301 Rubredoxin VF_1782 PF00753 Metallo-beta-lactamase superfamily VF_1782 PF00258 Flavodoxin VF_1783 PF00158 Sigma-54 interaction domain VF_1783 PF01590 GAF domain VF_1785 PF04356 Protein of unknown function (DUF489) VF_1786 PF08328 Adenylosuccinate lyase C-terminal VF_1786 PF00206 Lyase VF_1787 PF12833 Helix-turn-helix domain VF_1787 PF02311 AraC-like ligand binding domain VF_1789 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1789 PF00672 HAMP domain VF_1789 PF02743 Cache domain VF_1790 PF00270 DEAD/DEAH box helicase VF_1790 PF00271 Helicase conserved C-terminal domain VF_1791 PF01734 Patatin-like phospholipase VF_1792 PF04073 Aminoacyl-tRNA editing domain VF_1793 PF01268 Formate--tetrahydrofolate ligase VF_1794 PF03887 YfbU domain VF_1795 PF00267 Gram-negative porin VF_1796 PF13847 Methyltransferase domain VF_1798 PF00654 Voltage gated chloride channel VF_1799 PF03279 Bacterial lipid A biosynthesis acyltransferase VF_1801 PF08891 YfcL protein VF_1802 PF04315 Elongation factor P hydroxylase VF_1803 PF02308 MgtC family VF_1804 PF03458 UPF0126 domain VF_1805 PF01264 Chorismate synthase VF_1806 PF05175 Methyltransferase small domain VF_1807 PF01713 Smr domain VF_1808 PF00300 Histidine phosphatase superfamily (branch 1) VF_1809 PF00675 Insulinase (Peptidase family M16) VF_1809 PF05193 Peptidase M16 inactive domain VF_1809 PF16187 Middle or third domain of peptidase_M16 VF_1810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VF_1810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VF_1810 PF00378 Enoyl-CoA hydratase/isomerase VF_1811 PF02803 Thiolase, C-terminal domain VF_1811 PF00108 Thiolase, N-terminal domain VF_1812 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VF_1813 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VF_1815 PF04333 MlaA lipoprotein VF_1816 PF03918 Cytochrome C biogenesis protein VF_1817 PF03918 Cytochrome C biogenesis protein VF_1818 PF08534 Redoxin VF_1819 PF01578 Cytochrome C assembly protein VF_1819 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VF_1820 PF03100 CcmE VF_1822 PF01578 Cytochrome C assembly protein VF_1823 PF03379 CcmB protein VF_1824 PF00005 ABC transporter VF_1826 PF01584 CheW-like domain VF_1829 PF13614 AAA domain VF_1830 PF01339 CheB methylesterase VF_1830 PF00072 Response regulator receiver domain VF_1831 PF02895 Signal transducing histidine kinase, homodimeric domain VF_1831 PF01584 CheW-like domain VF_1831 PF01627 Hpt domain VF_1831 PF00072 Response regulator receiver domain VF_1831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1832 PF04344 Chemotaxis phosphatase, CheZ VF_1833 PF00072 Response regulator receiver domain VF_1834 PF04542 Sigma-70 region 2 VF_1834 PF04539 Sigma-70 region 3 VF_1834 PF04545 Sigma-70, region 4 VF_1835 PF10609 NUBPL iron-transfer P-loop NTPase VF_1836 PF00448 SRP54-type protein, GTPase domain VF_1837 PF00771 FHIPEP family VF_1839 PF01312 FlhB HrpN YscU SpaS Family VF_1840 PF01311 Bacterial export proteins, family 1 VF_1841 PF01313 Bacterial export proteins, family 3 VF_1842 PF00813 FliP family VF_1843 PF04347 Flagellar biosynthesis protein, FliO VF_1844 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VF_1845 PF02154 Flagellar motor switch protein FliM VF_1845 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VF_1849 PF18269 T3SS EscN ATPase C-terminal domain VF_1849 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VF_1851 PF14841 FliG middle domain VF_1851 PF14842 FliG N-terminal domain VF_1851 PF01706 FliG C-terminal domain VF_1852 PF08345 Flagellar M-ring protein C-terminal VF_1852 PF01514 Secretory protein of YscJ/FliF family VF_1853 PF02049 Flagellar hook-basal body complex protein FliE VF_1854 PF00158 Sigma-54 interaction domain VF_1854 PF00072 Response regulator receiver domain VF_1854 PF02954 Bacterial regulatory protein, Fis family VF_1855 PF13188 PAS domain VF_1855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1855 PF00512 His Kinase A (phospho-acceptor) domain VF_1856 PF02954 Bacterial regulatory protein, Fis family VF_1856 PF00158 Sigma-54 interaction domain VF_1856 PF06490 Flagellar regulatory protein FleQ VF_1858 PF02561 Flagellar protein FliS VF_1860 PF02465 Flagellar hook-associated protein 2 N-terminus VF_1860 PF07195 Flagellar hook-associated protein 2 C-terminus VF_1860 PF07196 Flagellin hook IN motif VF_1861 PF03646 FlaG protein VF_1863 PF07196 Flagellin hook IN motif VF_1863 PF00700 Bacterial flagellin C-terminal helical region VF_1863 PF00669 Bacterial flagellin N-terminal helical region VF_1864 PF07196 Flagellin hook IN motif VF_1864 PF00700 Bacterial flagellin C-terminal helical region VF_1864 PF00669 Bacterial flagellin N-terminal helical region VF_1865 PF00700 Bacterial flagellin C-terminal helical region VF_1865 PF07196 Flagellin hook IN motif VF_1865 PF00669 Bacterial flagellin N-terminal helical region VF_1866 PF00669 Bacterial flagellin N-terminal helical region VF_1866 PF07196 Flagellin hook IN motif VF_1866 PF00700 Bacterial flagellin C-terminal helical region VF_1868 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VF_1868 PF07196 Flagellin hook IN motif VF_1869 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VF_1869 PF10135 Rod binding protein VF_1870 PF02119 Flagellar P-ring protein VF_1871 PF02107 Flagellar L-ring protein VF_1872 PF00460 Flagella basal body rod protein VF_1872 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VF_1873 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VF_1873 PF00460 Flagella basal body rod protein VF_1874 PF00460 Flagella basal body rod protein VF_1874 PF07559 Flagellar basal body protein FlaE VF_1874 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VF_1875 PF03963 Flagellar hook capping protein - N-terminal region VF_1875 PF13860 FlgD Ig-like domain VF_1875 PF13861 FlgD Tudor-like domain VF_1876 PF00460 Flagella basal body rod protein VF_1876 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VF_1877 PF00460 Flagella basal body rod protein VF_1878 PF01739 CheR methyltransferase, SAM binding domain VF_1878 PF03705 CheR methyltransferase, all-alpha domain VF_1879 PF00072 Response regulator receiver domain VF_1879 PF01584 CheW-like domain VF_1881 PF04316 Anti-sigma-28 factor, FlgM VF_1887 PF00749 tRNA synthetases class I (E and Q), catalytic domain VF_1889 PF13609 Gram-negative porin VF_1890 PF00533 BRCA1 C Terminus (BRCT) domain VF_1890 PF01653 NAD-dependent DNA ligase adenylation domain VF_1890 PF03120 NAD-dependent DNA ligase OB-fold domain VF_1890 PF12826 Helix-hairpin-helix motif VF_1890 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VF_1891 PF04354 ZipA, C-terminal FtsZ-binding domain VF_1893 PF00291 Pyridoxal-phosphate dependent enzyme VF_1894 PF00381 PTS HPr component phosphorylation site VF_1895 PF05524 PEP-utilising enzyme, N-terminal VF_1895 PF00391 PEP-utilising enzyme, mobile domain VF_1895 PF02896 PEP-utilising enzyme, TIM barrel domain VF_1897 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VF_1898 PF04261 Dyp-type peroxidase family VF_1900 PF11143 Protein of unknown function (DUF2919) VF_1903 PF03264 NapC/NirT cytochrome c family, N-terminal region VF_1904 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VF_1905 PF01568 Molydopterin dinucleotide binding domain VF_1905 PF00384 Molybdopterin oxidoreductase VF_1905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VF_1907 PF13187 4Fe-4S dicluster domain VF_1907 PF12838 4Fe-4S dicluster domain VF_1908 PF00672 HAMP domain VF_1908 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1908 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VF_1908 PF07730 Histidine kinase VF_1909 PF00072 Response regulator receiver domain VF_1909 PF00196 Bacterial regulatory proteins, luxR family VF_1913 PF03960 ArsC family VF_1914 PF07687 Peptidase dimerisation domain VF_1914 PF01546 Peptidase family M20/M25/M40 VF_1915 PF02557 D-alanyl-D-alanine carboxypeptidase VF_1917 PF06804 NlpB/DapX lipoprotein VF_1918 PF00701 Dihydrodipicolinate synthetase family VF_1919 PF01842 ACT domain VF_1920 PF00578 AhpC/TSA family VF_1921 PF01594 AI-2E family transporter VF_1922 PF01435 Peptidase family M48 VF_1922 PF13181 Tetratricopeptide repeat VF_1923 PF03960 ArsC family VF_1926 PF00860 Permease family VF_1928 PF00586 AIR synthase related protein, N-terminal domain VF_1928 PF02769 AIR synthase related protein, C-terminal domain VF_1929 PF00551 Formyl transferase VF_1930 PF13230 Glutamine amidotransferases class-II VF_1931 PF13580 SIS domain VF_1932 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VF_1932 PF09317 Domain of unknown function (DUF1974) VF_1932 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VF_1932 PF02770 Acyl-CoA dehydrogenase, middle domain VF_1935 PF00929 Exonuclease VF_1936 PF00075 RNase H VF_1937 PF08241 Methyltransferase domain VF_1938 PF00753 Metallo-beta-lactamase superfamily VF_1938 PF16123 Hydroxyacylglutathione hydrolase C-terminus VF_1939 PF01476 LysM domain VF_1939 PF01464 Transglycosylase SLT domain VF_1942 PF00543 Nitrogen regulatory protein P-II VF_1943 PF00034 Cytochrome c VF_1945 PF01171 PP-loop family VF_1945 PF09179 TilS substrate binding domain VF_1945 PF11734 TilS substrate C-terminal domain VF_1946 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VF_1947 PF07733 Bacterial DNA polymerase III alpha NTPase domain VF_1947 PF02811 PHP domain VF_1947 PF01336 OB-fold nucleic acid binding domain VF_1947 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VF_1947 PF14579 Helix-hairpin-helix motif VF_1948 PF01351 Ribonuclease HII VF_1949 PF02684 Lipid-A-disaccharide synthetase VF_1950 PF00132 Bacterial transferase hexapeptide (six repeats) VF_1950 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VF_1951 PF07977 FabA-like domain VF_1952 PF00132 Bacterial transferase hexapeptide (six repeats) VF_1952 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VF_1953 PF03938 Outer membrane protein (OmpH-like) VF_1954 PF01103 Surface antigen VF_1954 PF07244 Surface antigen variable number repeat VF_1955 PF02163 Peptidase family M50 VF_1955 PF17820 PDZ domain VF_1956 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VF_1956 PF13288 DXP reductoisomerase C-terminal domain VF_1956 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VF_1958 PF01255 Putative undecaprenyl diphosphate synthase VF_1959 PF01765 Ribosome recycling factor VF_1960 PF00696 Amino acid kinase family VF_1961 PF00889 Elongation factor TS VF_1962 PF00318 Ribosomal protein S2 VF_1963 PF00557 Metallopeptidase family M24 VF_1964 PF01842 ACT domain VF_1964 PF08335 GlnD PII-uridylyltransferase VF_1964 PF01909 Nucleotidyltransferase domain VF_1964 PF01966 HD domain VF_1965 PF11944 Protein of unknown function (DUF3461) VF_1966 PF02355 Protein export membrane protein VF_1966 PF07549 SecD/SecF GG Motif VF_1967 PF02355 Protein export membrane protein VF_1967 PF13721 SecD export protein N-terminal TM region VF_1967 PF07549 SecD/SecF GG Motif VF_1968 PF02699 Preprotein translocase subunit VF_1969 PF01702 Queuine tRNA-ribosyltransferase VF_1970 PF02547 Queuosine biosynthesis protein VF_1971 PF00571 CBS domain VF_1972 PF00463 Isocitrate lyase family VF_1973 PF01274 Malate synthase VF_1974 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1974 PF03466 LysR substrate binding domain VF_1975 PF00578 AhpC/TSA family VF_1975 PF10417 C-terminal domain of 1-Cys peroxiredoxin VF_1976 PF03932 CutC family VF_1977 PF04076 Bacterial OB fold (BOF) protein VF_1979 PF03466 LysR substrate binding domain VF_1979 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1982 PF01895 PhoU domain VF_1983 PF00005 ABC transporter VF_1984 PF00528 Binding-protein-dependent transport system inner membrane component VF_1985 PF00528 Binding-protein-dependent transport system inner membrane component VF_1986 PF12849 PBP superfamily domain VF_1987 PF00512 His Kinase A (phospho-acceptor) domain VF_1987 PF11808 Phosphate regulon sensor protein PhoR VF_1987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1987 PF00989 PAS fold VF_1988 PF00072 Response regulator receiver domain VF_1988 PF00486 Transcriptional regulatory protein, C terminal VF_1989 PF04381 Putative exonuclease, RdgC VF_1990 PF16325 Peptidase family U32 C-terminal domain VF_1990 PF01136 Peptidase family U32 VF_1991 PF12838 4Fe-4S dicluster domain VF_1993 PF00226 DnaJ domain VF_1993 PF00684 DnaJ central domain VF_1993 PF01556 DnaJ C terminal domain VF_1994 PF00012 Hsp70 protein VF_1996 PF01025 GrpE VF_1997 PF01513 ATP-NAD kinase VF_1998 PF02463 RecF/RecN/SMC N terminal domain VF_1999 PF04355 SmpA / OmlA family VF_2000 PF03658 RnfH family Ubiquitin VF_2001 PF03364 Polyketide cyclase / dehydrase and lipid transport VF_2002 PF01668 SmpB protein VF_2008 PF17482 Phage tail sheath C-terminal domain VF_2008 PF04984 Phage tail sheath protein subtilisin-like domain VF_2037 PF00717 Peptidase S24-like VF_2037 PF01381 Helix-turn-helix VF_2041 PF00589 Phage integrase family VF_2041 PF02899 Phage integrase, N-terminal SAM-like domain VF_2042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_2042 PF00672 HAMP domain VF_2044 PF00528 Binding-protein-dependent transport system inner membrane component VF_2045 PF00528 Binding-protein-dependent transport system inner membrane component VF_2046 PF03459 TOBE domain VF_2046 PF17912 MalK OB fold domain VF_2046 PF00005 ABC transporter VF_2049 PF16657 Maltogenic Amylase, C-terminal domain VF_2049 PF02903 Alpha amylase, N-terminal ig-like domain VF_2049 PF00128 Alpha amylase, catalytic domain VF_2051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_2051 PF03466 LysR substrate binding domain VF_2052 PF01769 Divalent cation transporter VF_2052 PF03448 MgtE intracellular N domain VF_2052 PF00571 CBS domain VF_2055 PF03150 Di-haem cytochrome c peroxidase VF_2055 PF00034 Cytochrome c VF_2055 PF14376 Haem-binding domain VF_2056 PF08543 Phosphomethylpyrimidine kinase VF_2057 PF01276 Orn/Lys/Arg decarboxylase, major domain VF_2057 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VF_2057 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VF_2058 PF13520 Amino acid permease VF_2059 PF01235 Sodium:alanine symporter family VF_2060 PF00486 Transcriptional regulatory protein, C terminal VF_2060 PF18500 CadC C-terminal domain 1 VF_2062 PF04143 Sulphur transport VF_2063 PF04204 Homoserine O-succinyltransferase VF_2064 PF03605 Anaerobic c4-dicarboxylate membrane transporter VF_2065 PF07670 Nucleoside recognition VF_2065 PF07662 Na+ dependent nucleoside transporter C-terminus VF_2065 PF01773 Na+ dependent nucleoside transporter N-terminus VF_2066 PF10063 Uncharacterized integral membrane protein (DUF2301) VF_2067 PF04539 Sigma-70 region 3 VF_2067 PF04542 Sigma-70 region 2 VF_2067 PF00140 Sigma-70 factor, region 1.2 VF_2067 PF04545 Sigma-70, region 4 VF_2068 PF01551 Peptidase family M23 VF_2068 PF01476 LysM domain VF_2070 PF01975 Survival protein SurE VF_2071 PF01142 tRNA pseudouridine synthase D (TruD) VF_2072 PF02542 YgbB family VF_2073 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VF_2074 PF04977 Septum formation initiator VF_2075 PF00113 Enolase, C-terminal TIM barrel domain VF_2075 PF03952 Enolase, N-terminal domain VF_2076 PF00117 Glutamine amidotransferase class-I VF_2076 PF06418 CTP synthase N-terminus VF_2078 PF03819 MazG nucleotide pyrophosphohydrolase domain VF_2079 PF00669 Bacterial flagellin N-terminal helical region VF_2079 PF00700 Bacterial flagellin C-terminal helical region VF_2079 PF07196 Flagellin hook IN motif VF_2080 PF02824 TGS domain VF_2080 PF04607 Region found in RelA / SpoT proteins VF_2080 PF13291 ACT domain VF_2081 PF05958 tRNA (Uracil-5-)-methyltransferase VF_2082 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VF_2082 PF01627 Hpt domain VF_2082 PF00512 His Kinase A (phospho-acceptor) domain VF_2082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2082 PF00072 Response regulator receiver domain VF_2082 PF00672 HAMP domain VF_2083 PF01648 4'-phosphopantetheinyl transferase superfamily VF_2084 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VF_2085 PF11967 Recombination protein O N terminal VF_2085 PF02565 Recombination protein O C terminal VF_2086 PF01926 50S ribosome-binding GTPase VF_2086 PF07650 KH domain VF_2087 PF14622 Ribonuclease-III-like VF_2087 PF00035 Double-stranded RNA binding motif VF_2088 PF10502 Signal peptidase, peptidase S26 VF_2089 PF00679 Elongation factor G C-terminus VF_2089 PF03144 Elongation factor Tu domain 2 VF_2089 PF00009 Elongation factor Tu GTP binding domain VF_2089 PF06421 GTP-binding protein LepA C-terminus VF_2091 PF17188 MucB/RseB C-terminal domain VF_2091 PF03888 MucB/RseB N-terminal domain VF_2092 PF03873 Anti sigma-E protein RseA, C-terminal domain VF_2092 PF03872 Anti sigma-E protein RseA, N-terminal domain VF_2093 PF08281 Sigma-70, region 4 VF_2093 PF04542 Sigma-70 region 2 VF_2094 PF02910 Fumarate reductase flavoprotein C-term VF_2094 PF00890 FAD binding domain VF_2096 PF03937 Flavinator of succinate dehydrogenase VF_2098 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VF_2098 PF04073 Aminoacyl-tRNA editing domain VF_2098 PF03129 Anticodon binding domain VF_2100 PF01494 FAD binding domain VF_2101 PF01494 FAD binding domain VF_2102 PF03695 Uncharacterised protein family (UPF0149) VF_2103 PF05164 Cell division protein ZapA VF_2104 PF01812 5-formyltetrahydrofolate cyclo-ligase family VF_2105 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VF_2106 PF01842 ACT domain VF_2106 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VF_2106 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VF_2108 PF00924 Mechanosensitive ion channel VF_2108 PF05552 Conserved TM helix VF_2109 PF03883 Peroxide stress protein YaaA VF_2110 PF01235 Sodium:alanine symporter family VF_2113 PF03167 Uracil DNA glycosylase superfamily VF_2114 PF01261 Xylose isomerase-like TIM barrel VF_2115 PF01228 Glycine radical VF_2116 PF14821 Threonine synthase N terminus VF_2116 PF00291 Pyridoxal-phosphate dependent enzyme VF_2117 PF00288 GHMP kinases N terminal domain VF_2117 PF08544 GHMP kinases C terminal VF_2118 PF00696 Amino acid kinase family VF_2118 PF13840 ACT domain VF_2118 PF01842 ACT domain VF_2118 PF00742 Homoserine dehydrogenase VF_2118 PF03447 Homoserine dehydrogenase, NAD binding domain VF_2119 PF03737 Aldolase/RraA VF_2120 PF00486 Transcriptional regulatory protein, C terminal VF_2120 PF00072 Response regulator receiver domain VF_2122 PF00512 His Kinase A (phospho-acceptor) domain VF_2122 PF00989 PAS fold VF_2122 PF00072 Response regulator receiver domain VF_2122 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2122 PF18415 Histidine kinase receptor ArcB trans-membrane domain VF_2122 PF01627 Hpt domain VF_2123 PF04055 Radical SAM superfamily VF_2123 PF16199 Radical_SAM C-terminal domain VF_2124 PF04898 Glutamate synthase central domain VF_2124 PF00310 Glutamine amidotransferases class-II VF_2124 PF01645 Conserved region in glutamate synthase VF_2124 PF01493 GXGXG motif VF_2125 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VF_2125 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2128 PF01048 Phosphorylase superfamily VF_2130 PF03458 UPF0126 domain VF_2131 PF01551 Peptidase family M23 VF_2131 PF04225 Opacity-associated protein A LysM-like domain VF_2132 PF00873 AcrB/AcrD/AcrF family VF_2133 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_2134 PF01521 Iron-sulphur cluster biosynthesis VF_2135 PF00202 Aminotransferase class-III VF_2136 PF01594 AI-2E family transporter VF_2137 PF05175 Methyltransferase small domain VF_2137 PF08468 Methyltransferase small domain N-terminal VF_2138 PF00512 His Kinase A (phospho-acceptor) domain VF_2138 PF09308 LuxQ, periplasmic VF_2138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2138 PF00072 Response regulator receiver domain VF_2139 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_2140 PF00528 Binding-protein-dependent transport system inner membrane component VF_2141 PF12911 N-terminal TM domain of oligopeptide transport permease C VF_2141 PF00528 Binding-protein-dependent transport system inner membrane component VF_2142 PF00005 ABC transporter VF_2142 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_2143 PF00005 ABC transporter VF_2143 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_2145 PF01869 BadF/BadG/BcrA/BcrD ATPase family VF_2146 PF02838 Glycosyl hydrolase family 20, domain 2 VF_2146 PF00728 Glycosyl hydrolase family 20, catalytic domain VF_2147 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VF_2147 PF06165 Glycosyltransferase family 36 VF_2148 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VF_2148 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VF_2148 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VF_2148 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VF_2149 PF00005 ABC transporter VF_2149 PF08402 TOBE domain VF_2151 PF13416 Bacterial extracellular solute-binding protein VF_2152 PF00909 Ammonium Transporter Family VF_2153 PF00543 Nitrogen regulatory protein P-II VF_2154 PF06062 Uncharacterised protein family (UPF0231) VF_2155 PF17853 GGDEF-like domain VF_2155 PF13556 PucR C-terminal helix-turn-helix domain VF_2155 PF05651 Putative sugar diacid recognition VF_2156 PF02447 GntP family permease VF_2157 PF02595 Glycerate kinase family VF_2158 PF11791 Aconitate B N-terminal domain VF_2158 PF06434 Aconitate hydratase 2 N-terminus VF_2158 PF00330 Aconitase family (aconitate hydratase) VF_2159 PF01734 Patatin-like phospholipase VF_2161 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_2161 PF12729 Four helix bundle sensory module for signal transduction VF_2161 PF00672 HAMP domain VF_2162 PF00912 Transglycosylase VF_2162 PF14814 Bifunctional transglycosylase second domain VF_2162 PF00905 Penicillin binding protein transpeptidase domain VF_2163 PF04408 Helicase associated domain (HA2) VF_2163 PF00271 Helicase conserved C-terminal domain VF_2163 PF08482 ATP-dependent helicase C-terminal VF_2163 PF00270 DEAD/DEAH box helicase VF_2164 PF03749 Sugar fermentation stimulation protein RE domain VF_2164 PF17746 SfsA N-terminal OB domain VF_2165 PF01258 Prokaryotic dksA/traR C4-type zinc finger VF_2166 PF12627 Probable RNA and SrmB- binding site of polymerase A VF_2166 PF12626 Polymerase A arginine-rich C-terminus VF_2166 PF01743 Poly A polymerase head domain VF_2168 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VF_2169 PF02548 Ketopantoate hydroxymethyltransferase VF_2170 PF02569 Pantoate-beta-alanine ligase VF_2171 PF01061 ABC-2 type transporter VF_2172 PF00005 ABC transporter VF_2173 PF00916 Sulfate permease family VF_2173 PF01740 STAS domain VF_2174 PF00484 Carbonic anhydrase VF_2176 PF00156 Phosphoribosyl transferase domain VF_2177 PF00440 Bacterial regulatory proteins, tetR family VF_2178 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2178 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VF_2179 PF02817 e3 binding domain VF_2179 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VF_2179 PF00364 Biotin-requiring enzyme VF_2181 PF00456 Transketolase, thiamine diphosphate binding domain VF_2181 PF17831 Pyruvate dehydrogenase E1 component middle domain VF_2182 PF00392 Bacterial regulatory proteins, gntR family VF_2182 PF07729 FCD domain VF_2183 PF01510 N-acetylmuramoyl-L-alanine amidase VF_2184 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VF_2184 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VF_2185 PF07963 Prokaryotic N-terminal methylation motif VF_2185 PF00114 Pilin (bacterial filament) VF_2186 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VF_2186 PF00437 Type II/IV secretion system protein VF_2187 PF00482 Type II secretion system (T2SS), protein F VF_2188 PF06750 Bacterial Peptidase A24 N-terminal domain VF_2188 PF01478 Type IV leader peptidase family VF_2189 PF01121 Dephospho-CoA kinase VF_2190 PF07072 Cell division protein VF_2191 PF03884 DNA gyrase inhibitor YacG VF_2192 PF00293 NUDIX domain VF_2193 PF02810 SEC-C motif VF_2193 PF07517 SecA DEAD-like domain VF_2193 PF01043 SecA preprotein cross-linking domain VF_2193 PF07516 SecA Wing and Scaffold domain VF_2195 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VF_2196 PF00091 Tubulin/FtsZ family, GTPase domain VF_2196 PF12327 FtsZ family, C-terminal domain VF_2197 PF02491 SHS2 domain inserted in FTSA VF_2199 PF03799 Cell division protein FtsQ VF_2199 PF08478 POTRA domain, FtsQ-type VF_2200 PF01225 Mur ligase family, catalytic domain VF_2200 PF08245 Mur ligase middle domain VF_2200 PF02875 Mur ligase family, glutamate ligase domain VF_2201 PF03033 Glycosyltransferase family 28 N-terminal domain VF_2201 PF04101 Glycosyltransferase family 28 C-terminal domain VF_2202 PF01098 Cell cycle protein VF_2203 PF02875 Mur ligase family, glutamate ligase domain VF_2203 PF08245 Mur ligase middle domain VF_2204 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VF_2204 PF00953 Glycosyl transferase family 4 VF_2205 PF08245 Mur ligase middle domain VF_2205 PF02875 Mur ligase family, glutamate ligase domain VF_2205 PF01225 Mur ligase family, catalytic domain VF_2206 PF02875 Mur ligase family, glutamate ligase domain VF_2206 PF01225 Mur ligase family, catalytic domain VF_2206 PF08245 Mur ligase middle domain VF_2207 PF03717 Penicillin-binding Protein dimerisation domain VF_2207 PF00905 Penicillin binding protein transpeptidase domain VF_2208 PF04999 Cell division protein FtsL VF_2209 PF01795 MraW methylase family VF_2210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VF_2211 PF04348 LppC putative lipoprotein VF_2212 PF02021 Uncharacterised protein family UPF0102 VF_2213 PF13580 SIS domain VF_2214 PF04972 BON domain VF_2215 PF04386 Stringent starvation protein B VF_2216 PF02798 Glutathione S-transferase, N-terminal domain VF_2216 PF00043 Glutathione S-transferase, C-terminal domain VF_2217 PF02167 Cytochrome C1 family VF_2218 PF00032 Cytochrome b(C-terminal)/b6/petD VF_2218 PF00033 Cytochrome b/b6/petB VF_2220 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VF_2220 PF00355 Rieske [2Fe-2S] domain VF_2221 PF00380 Ribosomal protein S9/S16 VF_2222 PF00572 Ribosomal protein L13 VF_2223 PF03969 AFG1-like ATPase VF_2224 PF06295 Protein of unknown function (DUF1043) VF_2225 PF00595 PDZ domain VF_2226 PF13180 PDZ domain VF_2227 PF03989 DNA gyrase C-terminal domain, beta-propeller VF_2227 PF00521 DNA gyrase/topoisomerase IV, subunit A VF_2228 PF00986 DNA gyrase B subunit, carboxyl terminus VF_2228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2228 PF00204 DNA gyrase B VF_2228 PF01751 Toprim domain VF_2229 PF05728 Uncharacterised protein family (UPF0227) VF_2230 PF00149 Calcineurin-like phosphoesterase VF_2231 PF06853 Protein of unknown function (DUF1249) VF_2232 PF00293 NUDIX domain VF_2233 PF02321 Outer membrane efflux protein VF_2234 PF00294 pfkB family carbohydrate kinase VF_2234 PF01467 Cytidylyltransferase-like VF_2235 PF03710 Glutamate-ammonia ligase adenylyltransferase VF_2235 PF08335 GlnD PII-uridylyltransferase VF_2236 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_2236 PF12729 Four helix bundle sensory module for signal transduction VF_2236 PF00672 HAMP domain VF_2237 PF00027 Cyclic nucleotide-binding domain VF_2237 PF07885 Ion channel VF_2238 PF01928 CYTH domain VF_2239 PF01865 Protein of unknown function DUF47 VF_2240 PF01384 Phosphate transporter family VF_2241 PF08239 Bacterial SH3 domain VF_2243 PF01471 Putative peptidoglycan binding domain VF_2243 PF13401 AAA domain VF_2244 PF01966 HD domain VF_2244 PF01743 Poly A polymerase head domain VF_2244 PF12627 Probable RNA and SrmB- binding site of polymerase A VF_2245 PF02673 Bacitracin resistance protein BacA VF_2246 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VF_2247 PF02152 Dihydroneopterin aldolase VF_2248 PF02660 Glycerol-3-phosphate acyltransferase VF_2249 PF00814 Glycoprotease family VF_2250 PF01165 Ribosomal protein S21 VF_2251 PF09424 Yqey-like protein VF_2252 PF01807 CHC2 zinc finger VF_2252 PF10410 DnaB-helicase binding domain of primase VF_2252 PF08275 DNA primase catalytic core, N-terminal domain VF_2252 PF08278 DNA primase DnaG DnaB-binding VF_2254 PF03979 Sigma-70 factor, region 1.1 VF_2254 PF04539 Sigma-70 region 3 VF_2254 PF04542 Sigma-70 region 2 VF_2254 PF04545 Sigma-70, region 4 VF_2254 PF04546 Sigma-70, non-essential region VF_2254 PF00140 Sigma-70 factor, region 1.2 VF_2256 PF13193 AMP-binding enzyme C-terminal domain VF_2256 PF00501 AMP-binding enzyme VF_2258 PF02887 Pyruvate kinase, alpha/beta domain VF_2258 PF00224 Pyruvate kinase, barrel domain VF_2261 PF08448 PAS fold VF_2261 PF13426 PAS domain VF_2261 PF08447 PAS fold VF_2261 PF00563 EAL domain VF_2261 PF05231 MASE1 VF_2261 PF00990 Diguanylate cyclase, GGDEF domain VF_2262 PF10369 Small subunit of acetolactate synthase VF_2263 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VF_2263 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VF_2263 PF00205 Thiamine pyrophosphate enzyme, central domain VF_2264 PF00501 AMP-binding enzyme VF_2265 PF03466 LysR substrate binding domain VF_2265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_2266 PF03447 Homoserine dehydrogenase, NAD binding domain VF_2266 PF00742 Homoserine dehydrogenase VF_2266 PF00696 Amino acid kinase family VF_2267 PF01053 Cys/Met metabolism PLP-dependent enzyme VF_2268 PF01340 Met Apo-repressor, MetJ VF_2269 PF00128 Alpha amylase, catalytic domain VF_2269 PF02903 Alpha amylase, N-terminal ig-like domain VF_2272 PF00390 Malic enzyme, N-terminal domain VF_2272 PF03949 Malic enzyme, NAD binding domain VF_2273 PF01197 Ribosomal protein L31 VF_2274 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VF_2274 PF17764 3′ DNA-binding domain (3′BD) VF_2274 PF00270 DEAD/DEAH box helicase VF_2274 PF18074 Primosomal protein N C-terminal domain VF_2274 PF00271 Helicase conserved C-terminal domain VF_2275 PF00356 Bacterial regulatory proteins, lacI family VF_2277 PF00227 Proteasome subunit VF_2278 PF10431 C-terminal, D2-small domain, of ClpB protein VF_2278 PF07724 AAA domain (Cdc48 subfamily) VF_2278 PF00004 ATPase family associated with various cellular activities (AAA) VF_2279 PF02566 OsmC-like protein VF_2280 PF13545 Crp-like helix-turn-helix domain VF_2280 PF00027 Cyclic nucleotide-binding domain VF_2282 PF00171 Aldehyde dehydrogenase family VF_2283 PF04958 Arginine N-succinyltransferase beta subunit VF_2284 PF00202 Aminotransferase class-III VF_2285 PF00117 Glutamine amidotransferase class-I VF_2286 PF00579 tRNA synthetases class I (W and Y) VF_2287 PF13419 Haloacid dehalogenase-like hydrolase VF_2288 PF00834 Ribulose-phosphate 3 epimerase family VF_2289 PF02086 D12 class N6 adenine-specific DNA methyltransferase VF_2291 PF01761 3-dehydroquinate synthase VF_2292 PF01202 Shikimate kinase VF_2293 PF11741 AMIN domain VF_2293 PF07660 Secretin and TonB N terminus short domain VF_2293 PF03958 Bacterial type II/III secretion system short domain VF_2293 PF00263 Bacterial type II and III secretion system protein VF_2298 PF17092 Penicillin-binding protein OB-like domain VF_2298 PF00912 Transglycosylase VF_2298 PF00905 Penicillin binding protein transpeptidase domain VF_2299 PF03466 LysR substrate binding domain VF_2299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_2300 PF08534 Redoxin VF_2300 PF00462 Glutaredoxin VF_2301 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2301 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VF_2303 PF00583 Acetyltransferase (GNAT) family VF_2303 PF14698 Argininosuccinate lyase C-terminal VF_2303 PF00206 Lyase VF_2304 PF00764 Arginosuccinate synthase VF_2305 PF00696 Amino acid kinase family VF_2306 PF02774 Semialdehyde dehydrogenase, dimerisation domain VF_2306 PF01118 Semialdehyde dehydrogenase, NAD binding domain VF_2307 PF01546 Peptidase family M20/M25/M40 VF_2307 PF07687 Peptidase dimerisation domain VF_2308 PF00311 Phosphoenolpyruvate carboxylase VF_2309 PF02219 Methylenetetrahydrofolate reductase VF_2310 PF01281 Ribosomal protein L9, N-terminal domain VF_2310 PF03948 Ribosomal protein L9, C-terminal domain VF_2311 PF01084 Ribosomal protein S18 VF_2312 PF01250 Ribosomal protein S6 VF_2313 PF00588 SpoU rRNA Methylase family VF_2313 PF08032 RNA 2'-O ribose methyltransferase substrate binding VF_2314 PF08206 Ribonuclease B OB domain VF_2314 PF08461 Ribonuclease R winged-helix domain VF_2314 PF00773 RNB domain VF_2314 PF17876 Cold shock domain VF_2314 PF00575 S1 RNA binding domain VF_2315 PF02082 Transcriptional regulator VF_2316 PF00042 Globin VF_2316 PF00970 Oxidoreductase FAD-binding domain VF_2316 PF00175 Oxidoreductase NAD-binding domain VF_2317 PF08238 Sel1 repeat VF_2318 PF00709 Adenylosuccinate synthetase VF_2319 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VF_2320 PF01145 SPFH domain / Band 7 family VF_2321 PF12221 Bacterial membrane protein N terminal VF_2321 PF01145 SPFH domain / Band 7 family VF_2322 PF01926 50S ribosome-binding GTPase VF_2322 PF13167 GTP-binding GTPase N-terminal VF_2322 PF16360 GTP-binding GTPase Middle Region VF_2323 PF17209 Hfq protein VF_2325 PF08676 MutL C terminal dimerisation domain VF_2325 PF01119 DNA mismatch repair protein, C-terminal domain VF_2326 PF01520 N-acetylmuramoyl-L-alanine amidase VF_2327 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VF_2328 PF08331 Domain of unknown function (DUF1730) VF_2329 PF00929 Exonuclease VF_2330 PF03193 RsgA GTPase VF_2331 PF02666 Phosphatidylserine decarboxylase VF_2333 PF00152 tRNA synthetases class II (D, K and N) VF_2334 PF00890 FAD binding domain VF_2334 PF02910 Fumarate reductase flavoprotein C-term VF_2335 PF13085 2Fe-2S iron-sulfur cluster binding domain VF_2335 PF13183 4Fe-4S dicluster domain VF_2336 PF02300 Fumarate reductase subunit C VF_2337 PF02313 Fumarate reductase subunit D VF_2338 PF08207 Elongation factor P (EF-P) KOW-like domain VF_2338 PF09285 Elongation factor P, C-terminal VF_2338 PF01132 Elongation factor P (EF-P) OB domain VF_2339 PF04055 Radical SAM superfamily VF_2340 PF00365 Phosphofructokinase VF_2341 PF16916 Dimerisation domain of Zinc Transporter VF_2341 PF01545 Cation efflux family VF_2343 PF00072 Response regulator receiver domain VF_2343 PF00486 Transcriptional regulatory protein, C terminal VF_2344 PF16527 Two-component sensor protein CpxA, periplasmic domain VF_2344 PF00512 His Kinase A (phospho-acceptor) domain VF_2344 PF00672 HAMP domain VF_2344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2345 PF00588 SpoU rRNA Methylase family VF_2347 PF06426 Serine acetyltransferase, N-terminal VF_2347 PF00132 Bacterial transferase hexapeptide (six repeats) VF_2348 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VF_2348 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VF_2349 PF02556 Preprotein translocase subunit SecB VF_2350 PF00581 Rhodanese-like domain VF_2351 PF01551 Peptidase family M23 VF_2352 PF04186 FxsA cytoplasmic membrane protein VF_2353 PF00206 Lyase VF_2353 PF10415 Fumarase C C-terminus VF_2354 PF03605 Anaerobic c4-dicarboxylate membrane transporter VF_2355 PF00582 Universal stress protein family VF_2356 PF11412 Disulphide bond corrector protein DsbC VF_2356 PF02683 Cytochrome C biogenesis protein transmembrane region VF_2357 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VF_2360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VF_2360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VF_2361 PF01022 Bacterial regulatory protein, arsR family VF_2362 PF00990 Diguanylate cyclase, GGDEF domain VF_2364 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2366 PF01297 Zinc-uptake complex component A periplasmic VF_2367 PF00005 ABC transporter VF_2368 PF00950 ABC 3 transport family VF_2369 PF00132 Bacterial transferase hexapeptide (six repeats) VF_2370 PF02492 CobW/HypB/UreG, nucleotide-binding domain VF_2370 PF07683 Cobalamin synthesis protein cobW C-terminal domain VF_2372 PF01380 SIS domain VF_2373 PF00455 DeoR C terminal sensor domain VF_2373 PF08220 DeoR-like helix-turn-helix domain VF_2374 PF00196 Bacterial regulatory proteins, luxR family VF_2374 PF00072 Response regulator receiver domain VF_2375 PF01914 MarC family integral membrane protein VF_2377 PF00474 Sodium:solute symporter family VF_2379 PF13493 Domain of unknown function (DUF4118) VF_2379 PF02702 Osmosensitive K+ channel His kinase sensor domain VF_2379 PF00512 His Kinase A (phospho-acceptor) domain VF_2379 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2379 PF13492 GAF domain VF_2380 PF12832 MFS_1 like family VF_2382 PF14579 Helix-hairpin-helix motif VF_2382 PF11490 DNA polymerase III polC-type N-terminus II VF_2382 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VF_2382 PF02811 PHP domain VF_2382 PF00929 Exonuclease VF_2382 PF07733 Bacterial DNA polymerase III alpha NTPase domain VF_2382 PF01336 OB-fold nucleic acid binding domain VF_2382 PF14480 DNA polymerase III polC-type N-terminus I VF_2383 PF13193 AMP-binding enzyme C-terminal domain VF_2383 PF00501 AMP-binding enzyme VF_2383 PF16177 Acetyl-coenzyme A synthetase N-terminus VF_2385 PF01220 Dehydroquinase class II VF_2386 PF00364 Biotin-requiring enzyme VF_2387 PF00289 Biotin carboxylase, N-terminal domain VF_2387 PF02785 Biotin carboxylase C-terminal domain VF_2387 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VF_2389 PF01207 Dihydrouridine synthase (Dus) VF_2391 PF02954 Bacterial regulatory protein, Fis family VF_2393 PF09278 MerR, DNA binding VF_2393 PF00376 MerR family regulatory protein VF_2394 PF02142 MGS-like domain VF_2394 PF01808 AICARFT/IMPCHase bienzyme VF_2395 PF02844 Phosphoribosylglycinamide synthetase, N domain VF_2395 PF02843 Phosphoribosylglycinamide synthetase, C domain VF_2395 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VF_2397 PF00216 Bacterial DNA-binding protein VF_2398 PF00571 CBS domain VF_2398 PF01595 Cyclin M transmembrane N-terminal domain VF_2399 PF04222 Protein of unknown function (DUF416) VF_2400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VF_2402 PF01208 Uroporphyrinogen decarboxylase (URO-D) VF_2403 PF00293 NUDIX domain VF_2403 PF09297 NADH pyrophosphatase zinc ribbon domain VF_2404 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VF_2405 PF03783 Curli production assembly/transport component CsgG VF_2408 PF00196 Bacterial regulatory proteins, luxR family VF_2412 PF04997 RNA polymerase Rpb1, domain 1 VF_2412 PF00623 RNA polymerase Rpb1, domain 2 VF_2412 PF04983 RNA polymerase Rpb1, domain 3 VF_2412 PF04998 RNA polymerase Rpb1, domain 5 VF_2412 PF05000 RNA polymerase Rpb1, domain 4 VF_2414 PF04560 RNA polymerase Rpb2, domain 7 VF_2414 PF10385 RNA polymerase beta subunit external 1 domain VF_2414 PF04563 RNA polymerase beta subunit VF_2414 PF04561 RNA polymerase Rpb2, domain 2 VF_2414 PF04565 RNA polymerase Rpb2, domain 3 VF_2414 PF00562 RNA polymerase Rpb2, domain 6 VF_2415 PF00542 Ribosomal protein L7/L12 C-terminal domain VF_2415 PF16320 Ribosomal protein L7/L12 dimerisation domain VF_2416 PF00466 Ribosomal protein L10 VF_2418 PF00687 Ribosomal protein L1p/L10e family VF_2419 PF00298 Ribosomal protein L11, RNA binding domain VF_2419 PF03946 Ribosomal protein L11, N-terminal domain VF_2421 PF00467 KOW motif VF_2421 PF02357 Transcription termination factor nusG VF_2422 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VF_2423 PF00009 Elongation factor Tu GTP binding domain VF_2423 PF03144 Elongation factor Tu domain 2 VF_2423 PF03143 Elongation factor Tu C-terminal domain VF_2424 PF00485 Phosphoribulokinase / Uridine kinase family VF_2425 PF02237 Biotin protein ligase C terminal domain VF_2425 PF03099 Biotin/lipoate A/B protein ligase family VF_2425 PF08279 HTH domain VF_2426 PF01565 FAD binding domain VF_2426 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VF_2428 PF13091 PLD-like domain VF_2433 PF01177 Asp/Glu/Hydantoin racemase VF_2435 PF07715 TonB-dependent Receptor Plug Domain VF_2435 PF00593 TonB dependent receptor VF_2436 PF05958 tRNA (Uracil-5-)-methyltransferase VF_2438 PF00440 Bacterial regulatory proteins, tetR family VF_2439 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2439 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VF_2440 PF01554 MatE VF_2442 PF01726 LexA DNA binding domain VF_2442 PF00717 Peptidase S24-like VF_2443 PF01553 Acyltransferase VF_2444 PF01040 UbiA prenyltransferase family VF_2445 PF04345 Chorismate lyase VF_2446 PF03748 Flagellar basal body-associated protein FliL VF_2447 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VF_2447 PF01694 Rhomboid family VF_2448 PF00581 Rhodanese-like domain VF_2450 PF04545 Sigma-70, region 4 VF_2450 PF04542 Sigma-70 region 2 VF_2450 PF00140 Sigma-70 factor, region 1.2 VF_2451 PF18075 FtsX extracellular domain VF_2452 PF00005 ABC transporter VF_2453 PF02881 SRP54-type protein, helical bundle domain VF_2453 PF00448 SRP54-type protein, GTPase domain VF_2456 PF01914 MarC family integral membrane protein VF_2457 PF10678 Protein of unknown function (DUF2492) VF_2460 PF17191 RecG wedge domain VF_2460 PF00271 Helicase conserved C-terminal domain VF_2460 PF00270 DEAD/DEAH box helicase VF_2461 PF01521 Iron-sulphur cluster biosynthesis VF_2461 PF01106 NifU-like domain VF_2462 PF00459 Inositol monophosphatase family VF_2463 PF00293 NUDIX domain VF_2464 PF01203 Type II secretion system (T2SS), protein N VF_2465 PF04612 Type II secretion system (T2SS), protein M VF_2466 PF12693 GspL periplasmic domain VF_2466 PF05134 Type II secretion system (T2SS), protein L VF_2467 PF03934 Type II secretion system (T2SS), protein K VF_2468 PF07963 Prokaryotic N-terminal methylation motif VF_2468 PF11612 Type II secretion system (T2SS), protein J VF_2469 PF02501 Type II secretion system (T2SS), protein I VF_2469 PF07963 Prokaryotic N-terminal methylation motif VF_2470 PF12019 Type II transport protein GspH VF_2471 PF07963 Prokaryotic N-terminal methylation motif VF_2471 PF08334 Type II secretion system (T2SS), protein G VF_2472 PF00482 Type II secretion system (T2SS), protein F VF_2473 PF00437 Type II/IV secretion system protein VF_2474 PF00263 Bacterial type II and III secretion system protein VF_2474 PF03958 Bacterial type II/III secretion system short domain VF_2475 PF11356 Type II secretion system protein C VF_2476 PF01479 S4 domain VF_2477 PF01430 Hsp33 protein VF_2478 PF01293 Phosphoenolpyruvate carboxykinase VF_2480 PF00563 EAL domain VF_2480 PF08668 HDOD domain VF_2481 PF12146 Serine aminopeptidase, S33 VF_2483 PF00589 Phage integrase family VF_2483 PF02899 Phage integrase, N-terminal SAM-like domain VF_2484 PF01678 Diaminopimelate epimerase VF_2485 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VF_2485 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VF_2486 PF01491 Frataxin-like domain VF_2487 PF01432 Peptidase family M3 VF_2488 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VF_2489 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VF_2489 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2493 PF00578 AhpC/TSA family VF_2494 PF11412 Disulphide bond corrector protein DsbC VF_2494 PF02683 Cytochrome C biogenesis protein transmembrane region VF_2496 PF00069 Protein kinase domain VF_2507 PF01979 Amidohydrolase family VF_2508 PF03841 L-seryl-tRNA selenium transferase VF_2509 PF07071 KDGP aldolase VF_2510 PF00874 PRD domain VF_2510 PF05043 Mga helix-turn-helix domain VF_2510 PF08279 HTH domain VF_2510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VF_2513 PF00571 CBS domain VF_2515 PF02028 BCCT, betaine/carnitine/choline family transporter VF_2516 PF12911 N-terminal TM domain of oligopeptide transport permease C VF_2516 PF00528 Binding-protein-dependent transport system inner membrane component VF_2517 PF00528 Binding-protein-dependent transport system inner membrane component VF_2518 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_2519 PF00005 ABC transporter VF_2519 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_2520 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VF_2521 PF13361 UvrD-like helicase C-terminal domain VF_2521 PF00580 UvrD/REP helicase N-terminal domain VF_2522 PF00440 Bacterial regulatory proteins, tetR family VF_2522 PF16295 Tetracyclin repressor-like, C-terminal domain VF_2523 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_2524 PF00873 AcrB/AcrD/AcrF family VF_2525 PF04380 Membrane fusogenic activity VF_2528 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VF_2528 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VF_2529 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_2529 PF03466 LysR substrate binding domain VF_2533 PF00132 Bacterial transferase hexapeptide (six repeats) VF_2535 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VF_2535 PF08501 Shikimate dehydrogenase substrate binding domain VF_2535 PF01488 Shikimate / quinate 5-dehydrogenase VF_2536 PF01300 Telomere recombination VF_2537 PF00731 AIR carboxylase VF_2538 PF02222 ATP-grasp domain VF_2538 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VF_2539 PF01396 Topoisomerase DNA binding C4 zinc finger VF_2540 PF04361 Protein of unknown function (DUF494) VF_2541 PF17782 DprA winged helix domain VF_2541 PF02481 DNA recombination-mediator protein A VF_2542 PF01476 LysM domain VF_2543 PF01327 Polypeptide deformylase VF_2544 PF00551 Formyl transferase VF_2544 PF02911 Formyl transferase, C-terminal domain VF_2545 PF01189 16S rRNA methyltransferase RsmB/F VF_2545 PF01029 NusB family VF_2546 PF02254 TrkA-N domain VF_2546 PF02080 TrkA-C domain VF_2547 PF02386 Cation transport protein VF_2548 PF03006 Haemolysin-III related VF_2550 PF06288 Protein of unknown function (DUF1040) VF_2551 PF13746 4Fe-4S dicluster domain VF_2551 PF12801 4Fe-4S binding domain VF_2551 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VF_2552 PF01636 Phosphotransferase enzyme family VF_2553 PF01323 DSBA-like thioredoxin domain VF_2554 PF01553 Acyltransferase VF_2555 PF13335 Magnesium chelatase, subunit ChlI C-terminal VF_2555 PF01078 Magnesium chelatase, subunit ChlI VF_2556 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VF_2556 PF00205 Thiamine pyrophosphate enzyme, central domain VF_2556 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VF_2558 PF01063 Amino-transferase class IV VF_2559 PF00920 Dehydratase family VF_2560 PF00291 Pyridoxal-phosphate dependent enzyme VF_2560 PF00585 C-terminal regulatory domain of Threonine dehydratase VF_2561 PF00313 'Cold-shock' DNA-binding domain VF_2562 PF14602 Hexapeptide repeat of succinyl-transferase VF_2562 PF00132 Bacterial transferase hexapeptide (six repeats) VF_2562 PF12804 MobA-like NTP transferase domain VF_2563 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VF_2563 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VF_2564 PF02874 ATP synthase alpha/beta family, beta-barrel domain VF_2564 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VF_2565 PF00231 ATP synthase VF_2566 PF02874 ATP synthase alpha/beta family, beta-barrel domain VF_2566 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VF_2566 PF00306 ATP synthase alpha/beta chain, C terminal domain VF_2567 PF00213 ATP synthase delta (OSCP) subunit VF_2568 PF00430 ATP synthase B/B' CF(0) VF_2569 PF00137 ATP synthase subunit C VF_2570 PF00119 ATP synthase A chain VF_2571 PF03899 ATP synthase I chain VF_2572 PF02195 ParB-like nuclease domain VF_2572 PF17762 HTH domain found in ParB protein VF_2573 PF13614 AAA domain VF_2574 PF02527 rRNA small subunit methyltransferase G VF_2575 PF13932 GidA associated domain VF_2575 PF01134 Glucose inhibited division protein A VF_2589 PF02390 Putative methyltransferase VF_2591 PF02464 Competence-damaged protein VF_2592 PF04277 Oxaloacetate decarboxylase, gamma chain VF_2602 PF04715 Anthranilate synthase component I, N terminal region VF_2602 PF00425 chorismate binding enzyme VF_2629 PF01679 Proteolipid membrane potential modulator VF_2653 PF00749 tRNA synthetases class I (E and Q), catalytic domain VF_2656 PF00436 Single-strand binding protein family VF_A0002 PF01042 Endoribonuclease L-PSP VF_A0004 PF01546 Peptidase family M20/M25/M40 VF_A0004 PF07687 Peptidase dimerisation domain VF_A0005 PF01625 Peptide methionine sulfoxide reductase VF_A0005 PF01641 SelR domain VF_A0007 PF04828 Glutathione-dependent formaldehyde-activating enzyme VF_A0008 PF01734 Patatin-like phospholipase VF_A0009 PF00199 Catalase VF_A0009 PF06628 Catalase-related immune-responsive VF_A0015 PF00005 ABC transporter VF_A0015 PF12848 ABC transporter VF_A0016 PF11490 DNA polymerase III polC-type N-terminus II VF_A0016 PF02811 PHP domain VF_A0016 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VF_A0016 PF14579 Helix-hairpin-helix motif VF_A0016 PF07733 Bacterial DNA polymerase III alpha NTPase domain VF_A0016 PF14480 DNA polymerase III polC-type N-terminus I VF_A0016 PF00929 Exonuclease VF_A0018 PF03193 RsgA GTPase VF_A0019 PF00156 Phosphoribosyl transferase domain VF_A0021 PF00854 POT family VF_A0024 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0024 PF03466 LysR substrate binding domain VF_A0027 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_A0027 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VF_A0028 PF07690 Major Facilitator Superfamily VF_A0030 PF00892 EamA-like transporter family VF_A0031 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0031 PF03466 LysR substrate binding domain VF_A0034 PF03466 LysR substrate binding domain VF_A0034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0035 PF14863 Alkyl sulfatase dimerisation VF_A0035 PF00753 Metallo-beta-lactamase superfamily VF_A0035 PF14864 Alkyl sulfatase C-terminal VF_A0038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0039 PF07690 Major Facilitator Superfamily VF_A0040 PF05231 MASE1 VF_A0040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0040 PF07730 Histidine kinase VF_A0041 PF00196 Bacterial regulatory proteins, luxR family VF_A0041 PF00072 Response regulator receiver domain VF_A0042 PF07690 Major Facilitator Superfamily VF_A0046 PF00873 AcrB/AcrD/AcrF family VF_A0050 PF03773 Predicted permease VF_A0051 PF09905 DNA-binding protein VF530 VF_A0052 PF00106 short chain dehydrogenase VF_A0053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0053 PF03466 LysR substrate binding domain VF_A0054 PF13443 Cro/C1-type HTH DNA-binding domain VF_A0056 PF00990 Diguanylate cyclase, GGDEF domain VF_A0056 PF00563 EAL domain VF_A0056 PF03707 Bacterial signalling protein N terminal repeat VF_A0057 PF03707 Bacterial signalling protein N terminal repeat VF_A0057 PF00563 EAL domain VF_A0057 PF00990 Diguanylate cyclase, GGDEF domain VF_A0059 PF07715 TonB-dependent Receptor Plug Domain VF_A0059 PF00593 TonB dependent receptor VF_A0060 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VF_A0061 PF02378 Phosphotransferase system, EIIC VF_A0061 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VF_A0062 PF08240 Alcohol dehydrogenase GroES-like domain VF_A0062 PF00107 Zinc-binding dehydrogenase VF_A0072 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0072 PF00512 His Kinase A (phospho-acceptor) domain VF_A0072 PF09308 LuxQ, periplasmic VF_A0072 PF00072 Response regulator receiver domain VF_A0073 PF00854 POT family VF_A0080 PF04976 DMSO reductase anchor subunit (DmsC) VF_A0081 PF12800 4Fe-4S binding domain VF_A0081 PF13247 4Fe-4S dicluster domain VF_A0082 PF01568 Molydopterin dinucleotide binding domain VF_A0082 PF00384 Molybdopterin oxidoreductase VF_A0082 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VF_A0083 PF02613 Nitrate reductase delta subunit VF_A0092 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0092 PF08447 PAS fold VF_A0093 PF00860 Permease family VF_A0094 PF01066 CDP-alcohol phosphatidyltransferase VF_A0095 PF00005 ABC transporter VF_A0096 PF00528 Binding-protein-dependent transport system inner membrane component VF_A0097 PF13416 Bacterial extracellular solute-binding protein VF_A0098 PF09335 SNARE associated Golgi protein VF_A0100 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_A0100 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VF_A0101 PF00581 Rhodanese-like domain VF_A0102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0102 PF00512 His Kinase A (phospho-acceptor) domain VF_A0103 PF00072 Response regulator receiver domain VF_A0103 PF00196 Bacterial regulatory proteins, luxR family VF_A0105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0105 PF03466 LysR substrate binding domain VF_A0106 PF00703 Glycosyl hydrolases family 2 VF_A0106 PF02837 Glycosyl hydrolases family 2, sugar binding domain VF_A0106 PF16355 Domain of unknown function (DUF4982) VF_A0106 PF13287 Fn3 associated VF_A0106 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VF_A0107 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0107 PF00672 HAMP domain VF_A0107 PF02743 Cache domain VF_A0111 PF00005 ABC transporter VF_A0113 PF00881 Nitroreductase family VF_A0114 PF08241 Methyltransferase domain VF_A0116 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VF_A0118 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VF_A0119 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VF_A0122 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VF_A0122 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_A0123 PF00854 POT family VF_A0124 PF00854 POT family VF_A0125 PF00581 Rhodanese-like domain VF_A0128 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VF_A0129 PF03611 PTS system sugar-specific permease component VF_A0130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VF_A0137 PF03848 Tellurite resistance protein TehB VF_A0137 PF09313 Domain of unknown function (DUF1971) VF_A0142 PF02901 Pyruvate formate lyase-like VF_A0142 PF01228 Glycine radical VF_A0143 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VF_A0143 PF18416 N-acetylglucosamine binding protein domain 2 VF_A0145 PF01863 Protein of unknown function DUF45 VF_A0150 PF01709 Transcriptional regulator VF_A0151 PF00271 Helicase conserved C-terminal domain VF_A0151 PF00270 DEAD/DEAH box helicase VF_A0152 PF00072 Response regulator receiver domain VF_A0152 PF00990 Diguanylate cyclase, GGDEF domain VF_A0153 PF07690 Major Facilitator Superfamily VF_A0154 PF03880 DbpA RNA binding domain VF_A0154 PF00270 DEAD/DEAH box helicase VF_A0154 PF00271 Helicase conserved C-terminal domain VF_A0155 PF07694 5TMR of 5TMR-LYT VF_A0155 PF00990 Diguanylate cyclase, GGDEF domain VF_A0158 PF00005 ABC transporter VF_A0159 PF01497 Periplasmic binding protein VF_A0160 PF01032 FecCD transport family VF_A0161 PF06276 Ferric iron reductase FhuF-like transporter VF_A0161 PF04183 IucA / IucC family VF_A0163 PF04183 IucA / IucC family VF_A0163 PF06276 Ferric iron reductase FhuF-like transporter VF_A0164 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) VF_A0165 PF00593 TonB dependent receptor VF_A0165 PF07715 TonB-dependent Receptor Plug Domain VF_A0166 PF16200 C-terminal region of band_7 VF_A0166 PF01145 SPFH domain / Band 7 family VF_A0169 PF00672 HAMP domain VF_A0169 PF17200 Single Cache domain 2 VF_A0169 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0170 PF17200 Single Cache domain 2 VF_A0170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0170 PF00672 HAMP domain VF_A0173 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VF_A0173 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VF_A0177 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VF_A0177 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VF_A0178 PF00672 HAMP domain VF_A0178 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0178 PF00512 His Kinase A (phospho-acceptor) domain VF_A0179 PF00486 Transcriptional regulatory protein, C terminal VF_A0179 PF00072 Response regulator receiver domain VF_A0181 PF00072 Response regulator receiver domain VF_A0181 PF00486 Transcriptional regulatory protein, C terminal VF_A0182 PF16527 Two-component sensor protein CpxA, periplasmic domain VF_A0182 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0182 PF00672 HAMP domain VF_A0182 PF00512 His Kinase A (phospho-acceptor) domain VF_A0186 PF01618 MotA/TolQ/ExbB proton channel family VF_A0187 PF13677 Membrane MotB of proton-channel complex MotA/MotB VF_A0187 PF00691 OmpA family VF_A0188 PF00384 Molybdopterin oxidoreductase VF_A0188 PF18364 Molybdopterin oxidoreductase N-terminal domain VF_A0188 PF01568 Molydopterin dinucleotide binding domain VF_A0189 PF03264 NapC/NirT cytochrome c family, N-terminal region VF_A0191 PF07715 TonB-dependent Receptor Plug Domain VF_A0191 PF00593 TonB dependent receptor VF_A0193 PF01618 MotA/TolQ/ExbB proton channel family VF_A0194 PF01618 MotA/TolQ/ExbB proton channel family VF_A0195 PF02472 Biopolymer transport protein ExbD/TolR VF_A0199 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_A0199 PF00005 ABC transporter VF_A0200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_A0200 PF00005 ABC transporter VF_A0205 PF03601 Conserved hypothetical protein 698 VF_A0206 PF07690 Major Facilitator Superfamily VF_A0208 PF13186 Iron-sulfur cluster-binding domain VF_A0208 PF04055 Radical SAM superfamily VF_A0210 PF08019 Phosphoethanolamine transferase EptA/EptB VF_A0210 PF00884 Sulfatase VF_A0211 PF00072 Response regulator receiver domain VF_A0211 PF00486 Transcriptional regulatory protein, C terminal VF_A0212 PF00672 HAMP domain VF_A0212 PF00512 His Kinase A (phospho-acceptor) domain VF_A0212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0213 PF00884 Sulfatase VF_A0220 PF00263 Bacterial type II and III secretion system protein VF_A0220 PF13629 Pilus formation protein N terminal region VF_A0220 PF04972 BON domain VF_A0223 PF00437 Type II/IV secretion system protein VF_A0230 PF00691 OmpA family VF_A0233 PF01627 Hpt domain VF_A0233 PF18415 Histidine kinase receptor ArcB trans-membrane domain VF_A0233 PF00512 His Kinase A (phospho-acceptor) domain VF_A0233 PF00072 Response regulator receiver domain VF_A0233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0233 PF00989 PAS fold VF_A0235 PF00230 Major intrinsic protein VF_A0236 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VF_A0236 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VF_A0237 PF00072 Response regulator receiver domain VF_A0237 PF09308 LuxQ, periplasmic VF_A0237 PF00512 His Kinase A (phospho-acceptor) domain VF_A0237 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0238 PF08220 DeoR-like helix-turn-helix domain VF_A0238 PF00455 DeoR C terminal sensor domain VF_A0239 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VF_A0239 PF01266 FAD dependent oxidoreductase VF_A0241 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family VF_A0244 PF00990 Diguanylate cyclase, GGDEF domain VF_A0246 PF12729 Four helix bundle sensory module for signal transduction VF_A0246 PF00672 HAMP domain VF_A0246 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0247 PF00486 Transcriptional regulatory protein, C terminal VF_A0247 PF00072 Response regulator receiver domain VF_A0248 PF13183 4Fe-4S dicluster domain VF_A0248 PF02754 Cysteine-rich domain VF_A0249 PF00890 FAD binding domain VF_A0250 PF01266 FAD dependent oxidoreductase VF_A0250 PF04324 BFD-like [2Fe-2S] binding domain VF_A0251 PF00384 Molybdopterin oxidoreductase VF_A0251 PF01568 Molydopterin dinucleotide binding domain VF_A0251 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VF_A0251 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VF_A0251 PF00037 4Fe-4S binding domain VF_A0253 PF07687 Peptidase dimerisation domain VF_A0253 PF01546 Peptidase family M20/M25/M40 VF_A0255 PF12833 Helix-turn-helix domain VF_A0256 PF04237 YjbR VF_A0259 PF00072 Response regulator receiver domain VF_A0259 PF00486 Transcriptional regulatory protein, C terminal VF_A0260 PF00999 Sodium/hydrogen exchanger family VF_A0260 PF02254 TrkA-N domain VF_A0261 PF02525 Flavodoxin-like fold VF_A0262 PF00893 Small Multidrug Resistance protein VF_A0264 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_A0264 PF03473 MOSC domain VF_A0264 PF03476 MOSC N-terminal beta barrel domain VF_A0265 PF00512 His Kinase A (phospho-acceptor) domain VF_A0265 PF18719 ArlS sensor domain VF_A0265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0266 PF00072 Response regulator receiver domain VF_A0266 PF00486 Transcriptional regulatory protein, C terminal VF_A0268 PF05661 Protein of unknown function (DUF808) VF_A0276 PF00990 Diguanylate cyclase, GGDEF domain VF_A0276 PF08448 PAS fold VF_A0277 PF08443 RimK-like ATP-grasp domain VF_A0277 PF18030 RimK PreATP-grasp domain VF_A0278 PF03741 Integral membrane protein TerC family VF_A0281 PF03477 ATP cone domain VF_A0281 PF13597 Anaerobic ribonucleoside-triphosphate reductase VF_A0283 PF00155 Aminotransferase class I and II VF_A0284 PF18030 RimK PreATP-grasp domain VF_A0284 PF08443 RimK-like ATP-grasp domain VF_A0285 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_A0285 PF01464 Transglycosylase SLT domain VF_A0286 PF01464 Transglycosylase SLT domain VF_A0289 PF07685 CobB/CobQ-like glutamine amidotransferase domain VF_A0289 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VF_A0291 PF00528 Binding-protein-dependent transport system inner membrane component VF_A0292 PF00005 ABC transporter VF_A0292 PF03459 TOBE domain VF_A0293 PF13419 Haloacid dehalogenase-like hydrolase VF_A0295 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VF_A0297 PF06796 Periplasmic nitrate reductase protein NapE VF_A0298 PF03264 NapC/NirT cytochrome c family, N-terminal region VF_A0299 PF01568 Molydopterin dinucleotide binding domain VF_A0299 PF18364 Molybdopterin oxidoreductase N-terminal domain VF_A0299 PF00384 Molybdopterin oxidoreductase VF_A0300 PF00672 HAMP domain VF_A0300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0300 PF02743 Cache domain VF_A0301 PF16875 Glycosyl hydrolase family 36 N-terminal domain VF_A0301 PF16874 Glycosyl hydrolase family 36 C-terminal domain VF_A0302 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0302 PF00672 HAMP domain VF_A0302 PF12729 Four helix bundle sensory module for signal transduction VF_A0305 PF00005 ABC transporter VF_A0306 PF00005 ABC transporter VF_A0306 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_A0307 PF00528 Binding-protein-dependent transport system inner membrane component VF_A0307 PF12911 N-terminal TM domain of oligopeptide transport permease C VF_A0308 PF00528 Binding-protein-dependent transport system inner membrane component VF_A0309 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_A0310 PF00158 Sigma-54 interaction domain VF_A0310 PF02954 Bacterial regulatory protein, Fis family VF_A0311 PF04012 PspA/IM30 family VF_A0314 PF04317 YcjX-like family, DUF463 VF_A0315 PF05128 Domain of unknown function (DUF697) VF_A0316 PF08543 Phosphomethylpyrimidine kinase VF_A0317 PF00005 ABC transporter VF_A0318 PF00528 Binding-protein-dependent transport system inner membrane component VF_A0319 PF09084 NMT1/THI5 like VF_A0320 PF03070 TENA/THI-4/PQQC family VF_A0321 PF02110 Hydroxyethylthiazole kinase family VF_A0322 PF02581 Thiamine monophosphate synthase VF_A0323 PF00990 Diguanylate cyclase, GGDEF domain VF_A0324 PF02683 Cytochrome C biogenesis protein transmembrane region VF_A0324 PF11412 Disulphide bond corrector protein DsbC VF_A0325 PF17200 Single Cache domain 2 VF_A0325 PF00672 HAMP domain VF_A0325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0328 PF13488 Glycine zipper VF_A0328 PF00691 OmpA family VF_A0332 PF00593 TonB dependent receptor VF_A0332 PF07715 TonB-dependent Receptor Plug Domain VF_A0333 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VF_A0333 PF00326 Prolyl oligopeptidase family VF_A0334 PF01047 MarR family VF_A0335 PF02566 OsmC-like protein VF_A0338 PF01204 Trehalase VF_A0340 PF13520 Amino acid permease VF_A0342 PF00990 Diguanylate cyclase, GGDEF domain VF_A0342 PF00072 Response regulator receiver domain VF_A0343 PF08448 PAS fold VF_A0343 PF00990 Diguanylate cyclase, GGDEF domain VF_A0344 PF03707 Bacterial signalling protein N terminal repeat VF_A0344 PF00990 Diguanylate cyclase, GGDEF domain VF_A0344 PF00563 EAL domain VF_A0345 PF13520 Amino acid permease VF_A0346 PF04074 YhcH/YjgK/YiaL VF_A0347 PF00703 Glycosyl hydrolases family 2 VF_A0347 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VF_A0347 PF02837 Glycosyl hydrolases family 2, sugar binding domain VF_A0347 PF02929 Beta galactosidase small chain VF_A0347 PF16353 Domain of unknown function(DUF4981) VF_A0348 PF00356 Bacterial regulatory proteins, lacI family VF_A0350 PF00571 CBS domain VF_A0351 PF00474 Sodium:solute symporter family VF_A0352 PF16363 GDP-mannose 4,6 dehydratase VF_A0353 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VF_A0353 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VF_A0355 PF08544 GHMP kinases C terminal VF_A0355 PF00288 GHMP kinases N terminal domain VF_A0355 PF10509 Galactokinase galactose-binding signature VF_A0356 PF01263 Aldose 1-epimerase VF_A0357 PF00873 AcrB/AcrD/AcrF family VF_A0358 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_A0360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VF_A0360 PF00072 Response regulator receiver domain VF_A0360 PF00672 HAMP domain VF_A0360 PF01627 Hpt domain VF_A0360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0360 PF00512 His Kinase A (phospho-acceptor) domain VF_A0361 PF00356 Bacterial regulatory proteins, lacI family VF_A0362 PF01588 Putative tRNA binding domain VF_A0363 PF01235 Sodium:alanine symporter family VF_A0366 PF05525 Branched-chain amino acid transport protein VF_A0367 PF00850 Histone deacetylase domain VF_A0368 PF17158 Membrane-associated sensor, integral membrane domain VF_A0368 PF00990 Diguanylate cyclase, GGDEF domain VF_A0369 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VF_A0369 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VF_A0371 PF03729 Short repeat of unknown function (DUF308) VF_A0372 PF00924 Mechanosensitive ion channel VF_A0373 PF00924 Mechanosensitive ion channel VF_A0374 PF00270 DEAD/DEAH box helicase VF_A0374 PF00271 Helicase conserved C-terminal domain VF_A0378 PF02028 BCCT, betaine/carnitine/choline family transporter VF_A0379 PF00529 HlyD membrane-fusion protein of T1SS VF_A0379 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_A0380 PF11742 Protein of unknown function (DUF3302) VF_A0381 PF00990 Diguanylate cyclase, GGDEF domain VF_A0381 PF00072 Response regulator receiver domain VF_A0383 PF00773 RNB domain VF_A0383 PF08206 Ribonuclease B OB domain VF_A0383 PF00575 S1 RNA binding domain VF_A0384 PF00271 Helicase conserved C-terminal domain VF_A0384 PF00270 DEAD/DEAH box helicase VF_A0384 PF03880 DbpA RNA binding domain VF_A0385 PF13302 Acetyltransferase (GNAT) domain VF_A0386 PF01226 Formate/nitrite transporter VF_A0387 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0387 PF03466 LysR substrate binding domain VF_A0389 PF00672 HAMP domain VF_A0389 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0389 PF02743 Cache domain VF_A0390 PF00528 Binding-protein-dependent transport system inner membrane component VF_A0391 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_A0392 PF00528 Binding-protein-dependent transport system inner membrane component VF_A0393 PF00005 ABC transporter VF_A0394 PF00793 DAHP synthetase I family VF_A0395 PF11398 Protein of unknown function (DUF2813) VF_A0396 PF02872 5'-nucleotidase, C-terminal domain VF_A0396 PF00149 Calcineurin-like phosphoesterase VF_A0398 PF00990 Diguanylate cyclase, GGDEF domain VF_A0400 PF04198 Putative sugar-binding domain VF_A0402 PF01048 Phosphorylase superfamily VF_A0403 PF02080 TrkA-C domain VF_A0403 PF02254 TrkA-N domain VF_A0404 PF02386 Cation transport protein VF_A0405 PF00924 Mechanosensitive ion channel VF_A0409 PF12843 Putative quorum-sensing-regulated virulence factor VF_A0411 PF00248 Aldo/keto reductase family VF_A0412 PF01979 Amidohydrolase family VF_A0413 PF03889 Alternative ribosome-rescue factor A VF_A0414 PF13654 AAA domain VF_A0414 PF05362 Lon protease (S16) C-terminal proteolytic domain VF_A0417 PF00107 Zinc-binding dehydrogenase VF_A0417 PF08240 Alcohol dehydrogenase GroES-like domain VF_A0418 PF00155 Aminotransferase class I and II VF_A0419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0419 PF03466 LysR substrate binding domain VF_A0421 PF02833 DHHA2 domain VF_A0421 PF01368 DHH family VF_A0423 PF00753 Metallo-beta-lactamase superfamily VF_A0423 PF13567 Domain of unknown function (DUF4131) VF_A0423 PF03772 Competence protein VF_A0424 PF00005 ABC transporter VF_A0424 PF00664 ABC transporter transmembrane region VF_A0425 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VF_A0426 PF03966 Trm112p-like protein VF_A0427 PF02348 Cytidylyltransferase VF_A0428 PF02698 DUF218 domain VF_A0430 PF03882 MukF winged-helix domain VF_A0430 PF17193 MukF C-terminal domain VF_A0430 PF17192 MukF middle domain VF_A0431 PF04288 MukE-like family VF_A0432 PF04310 MukB N-terminal VF_A0432 PF16330 MukB hinge domain VF_A0434 PF00684 DnaJ central domain VF_A0434 PF01556 DnaJ C terminal domain VF_A0434 PF00226 DnaJ domain VF_A0435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0435 PF07689 KaiB domain VF_A0435 PF00512 His Kinase A (phospho-acceptor) domain VF_A0436 PF00072 Response regulator receiver domain VF_A0436 PF00486 Transcriptional regulatory protein, C terminal VF_A0438 PF02378 Phosphotransferase system, EIIC VF_A0438 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VF_A0438 PF00367 phosphotransferase system, EIIB VF_A0441 PF01168 Alanine racemase, N-terminal domain VF_A0441 PF00842 Alanine racemase, C-terminal domain VF_A0441 PF01757 Acyltransferase family VF_A0444 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_A0445 PF00873 AcrB/AcrD/AcrF family VF_A0447 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0447 PF00672 HAMP domain VF_A0447 PF12729 Four helix bundle sensory module for signal transduction VF_A0448 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0448 PF00672 HAMP domain VF_A0450 PF00221 Aromatic amino acid lyase VF_A0451 PF17391 Urocanase N-terminal domain VF_A0451 PF17392 Urocanase C-terminal domain VF_A0451 PF01175 Urocanase Rossmann-like domain VF_A0452 PF00491 Arginase family VF_A0453 PF01979 Amidohydrolase family VF_A0454 PF00392 Bacterial regulatory proteins, gntR family VF_A0454 PF07702 UTRA domain VF_A0456 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_A0456 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VF_A0460 PF02559 CarD-like/TRCF domain VF_A0460 PF00270 DEAD/DEAH box helicase VF_A0460 PF17757 UvrB interaction domain VF_A0460 PF00271 Helicase conserved C-terminal domain VF_A0460 PF03461 TRCF domain VF_A0462 PF02687 FtsX-like permease family VF_A0462 PF12704 MacB-like periplasmic core domain VF_A0463 PF00005 ABC transporter VF_A0464 PF02687 FtsX-like permease family VF_A0464 PF12704 MacB-like periplasmic core domain VF_A0468 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VF_A0468 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VF_A0469 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VF_A0470 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VF_A0470 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VF_A0471 PF09335 SNARE associated Golgi protein VF_A0473 PF00486 Transcriptional regulatory protein, C terminal VF_A0473 PF00072 Response regulator receiver domain VF_A0475 PF00563 EAL domain VF_A0475 PF00990 Diguanylate cyclase, GGDEF domain VF_A0475 PF10442 FIST C domain VF_A0475 PF08495 FIST N domain VF_A0476 PF00990 Diguanylate cyclase, GGDEF domain VF_A0476 PF03707 Bacterial signalling protein N terminal repeat VF_A0476 PF00563 EAL domain VF_A0481 PF17200 Single Cache domain 2 VF_A0481 PF00672 HAMP domain VF_A0481 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0482 PF03616 Sodium/glutamate symporter VF_A0483 PF01098 Cell cycle protein VF_A0484 PF00849 RNA pseudouridylate synthase VF_A0485 PF00849 RNA pseudouridylate synthase VF_A0487 PF13609 Gram-negative porin VF_A0489 PF03466 LysR substrate binding domain VF_A0489 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0492 PF03702 Anhydro-N-acetylmuramic acid kinase VF_A0493 PF00933 Glycosyl hydrolase family 3 N terminal domain VF_A0494 PF02887 Pyruvate kinase, alpha/beta domain VF_A0494 PF00224 Pyruvate kinase, barrel domain VF_A0495 PF04055 Radical SAM superfamily VF_A0496 PF00480 ROK family VF_A0497 PF01212 Beta-eliminating lyase VF_A0498 PF17868 AAA lid domain VF_A0498 PF07728 AAA domain (dynein-related subfamily) VF_A0498 PF12592 Protein of unknown function (DUF3763) VF_A0499 PF05762 VWA domain containing CoxE-like protein VF_A0506 PF11849 Domain of unknown function (DUF3369) VF_A0507 PF03616 Sodium/glutamate symporter VF_A0509 PF00005 ABC transporter VF_A0509 PF00664 ABC transporter transmembrane region VF_A0510 PF07683 Cobalamin synthesis protein cobW C-terminal domain VF_A0510 PF02492 CobW/HypB/UreG, nucleotide-binding domain VF_A0511 PF01926 50S ribosome-binding GTPase VF_A0513 PF13356 Arm DNA-binding domain VF_A0513 PF00589 Phage integrase family VF_A0522 PF04002 RadC-like JAB domain VF_A0524 PF00075 RNase H VF_A0526 PF13426 PAS domain VF_A0526 PF00990 Diguanylate cyclase, GGDEF domain VF_A0526 PF00563 EAL domain VF_A0527 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0527 PF00672 HAMP domain VF_A0527 PF12729 Four helix bundle sensory module for signal transduction VF_A0528 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0529 PF04973 Nicotinamide mononucleotide transporter VF_A0530 PF01048 Phosphorylase superfamily VF_A0535 PF12161 HsdM N-terminal domain VF_A0535 PF02384 N-6 DNA Methylase VF_A0537 PF12161 HsdM N-terminal domain VF_A0537 PF02384 N-6 DNA Methylase VF_A0539 PF18766 SWI2/SNF2 ATPase VF_A0539 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VF_A0539 PF11867 Domain of unknown function (DUF3387) VF_A0548 PF13356 Arm DNA-binding domain VF_A0548 PF00589 Phage integrase family VF_A0553 PF00271 Helicase conserved C-terminal domain VF_A0553 PF00270 DEAD/DEAH box helicase VF_A0554 PF06865 Pyrimidine/purine nucleoside phosphorylase VF_A0555 PF12849 PBP superfamily domain VF_A0556 PF12833 Helix-turn-helix domain VF_A0557 PF12793 Sugar transport-related sRNA regulator N-term VF_A0557 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_A0561 PF00486 Transcriptional regulatory protein, C terminal VF_A0561 PF00072 Response regulator receiver domain VF_A0563 PF03701 Uncharacterised protein family (UPF0181) VF_A0565 PF00994 Probable molybdopterin binding domain VF_A0567 PF03707 Bacterial signalling protein N terminal repeat VF_A0567 PF00990 Diguanylate cyclase, GGDEF domain VF_A0567 PF00563 EAL domain VF_A0568 PF13380 CoA binding domain VF_A0568 PF00583 Acetyltransferase (GNAT) family VF_A0568 PF13607 Succinyl-CoA ligase like flavodoxin domain VF_A0570 PF07478 D-ala D-ala ligase C-terminus VF_A0570 PF01820 D-ala D-ala ligase N-terminus VF_A0573 PF01253 Translation initiation factor SUI1 VF_A0576 PF05707 Zonular occludens toxin (Zot) VF_A0577 PF10734 Protein of unknown function (DUF2523) VF_A0578 PF16710 N-terminal N1 domain of Vibrio phage CTXphi pIII VF_A0582 PF01381 Helix-turn-helix VF_A0585 PF02233 NAD(P) transhydrogenase beta subunit VF_A0586 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VF_A0586 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VF_A0586 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VF_A0588 PF00691 OmpA family VF_A0591 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_A0595 PF00313 'Cold-shock' DNA-binding domain VF_A0597 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0597 PF03466 LysR substrate binding domain VF_A0601 PF01467 Cytidylyltransferase-like VF_A0602 PF02540 NAD synthase VF_A0603 PF01541 GIY-YIG catalytic domain VF_A0604 PF04337 Protein of unknown function, DUF480 VF_A0606 PF04363 Protein of unknown function (DUF496) VF_A0608 PF00486 Transcriptional regulatory protein, C terminal VF_A0608 PF00072 Response regulator receiver domain VF_A0618 PF07670 Nucleoside recognition VF_A0624 PF01177 Asp/Glu/Hydantoin racemase VF_A0626 PF00583 Acetyltransferase (GNAT) family VF_A0626 PF00814 Glycoprotease family VF_A0628 PF02548 Ketopantoate hydroxymethyltransferase VF_A0638 PF01810 LysE type translocator VF_A0640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VF_A0653 PF00583 Acetyltransferase (GNAT) family VF_A0663 PF13495 Phage integrase, N-terminal SAM-like domain VF_A0663 PF00589 Phage integrase family VF_A0666 PF03061 Thioesterase superfamily VF_A0672 PF00593 TonB dependent receptor VF_A0672 PF07660 Secretin and TonB N terminus short domain VF_A0672 PF07715 TonB-dependent Receptor Plug Domain VF_A0673 PF05992 SbmA/BacA-like family VF_A0677 PF02743 Cache domain VF_A0677 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0677 PF00672 HAMP domain VF_A0678 PF07726 ATPase family associated with various cellular activities (AAA) VF_A0678 PF17863 AAA lid domain VF_A0679 PF01882 Protein of unknown function DUF58 VF_A0681 PF13519 von Willebrand factor type A domain VF_A0682 PF07584 Aerotolerance regulator N-terminal VF_A0682 PF13519 von Willebrand factor type A domain VF_A0685 PF00923 Transaldolase/Fructose-6-phosphate aldolase VF_A0686 PF02779 Transketolase, pyrimidine binding domain VF_A0686 PF00456 Transketolase, thiamine diphosphate binding domain VF_A0686 PF02780 Transketolase, C-terminal domain VF_A0687 PF03279 Bacterial lipid A biosynthesis acyltransferase VF_A0691 PF00881 Nitroreductase family VF_A0692 PF00990 Diguanylate cyclase, GGDEF domain VF_A0692 PF08448 PAS fold VF_A0694 PF00132 Bacterial transferase hexapeptide (six repeats) VF_A0695 PF00478 IMP dehydrogenase / GMP reductase domain VF_A0696 PF00294 pfkB family carbohydrate kinase VF_A0698 PF01584 CheW-like domain VF_A0698 PF00072 Response regulator receiver domain VF_A0699 PF01575 MaoC like domain VF_A0700 PF08669 Glycine cleavage T-protein C-terminal barrel domain VF_A0700 PF01571 Aminomethyltransferase folate-binding domain VF_A0702 PF01597 Glycine cleavage H-protein VF_A0703 PF02347 Glycine cleavage system P-protein VF_A0706 PF00563 EAL domain VF_A0706 PF00990 Diguanylate cyclase, GGDEF domain VF_A0706 PF03707 Bacterial signalling protein N terminal repeat VF_A0708 PF12833 Helix-turn-helix domain VF_A0709 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VF_A0709 PF02378 Phosphotransferase system, EIIC VF_A0709 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VF_A0710 PF01238 Phosphomannose isomerase type I VF_A0712 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VF_A0712 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VF_A0712 PF02378 Phosphotransferase system, EIIC VF_A0714 PF01734 Patatin-like phospholipase VF_A0715 PF00704 Glycosyl hydrolases family 18 VF_A0715 PF06483 Chitinase C VF_A0722 PF03553 Na+/H+ antiporter family VF_A0724 PF03466 LysR substrate binding domain VF_A0724 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0726 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VF_A0730 PF03466 LysR substrate binding domain VF_A0730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0731 PF16657 Maltogenic Amylase, C-terminal domain VF_A0731 PF00128 Alpha amylase, catalytic domain VF_A0732 PF04397 LytTr DNA-binding domain VF_A0732 PF00072 Response regulator receiver domain VF_A0733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A0733 PF07694 5TMR of 5TMR-LYT VF_A0733 PF06580 Histidine kinase VF_A0736 PF02687 FtsX-like permease family VF_A0736 PF12704 MacB-like periplasmic core domain VF_A0737 PF00005 ABC transporter VF_A0739 PF00583 Acetyltransferase (GNAT) family VF_A0740 PF01258 Prokaryotic dksA/traR C4-type zinc finger VF_A0741 PF00591 Glycosyl transferase family, a/b domain VF_A0741 PF02885 Glycosyl transferase family, helical bundle domain VF_A0743 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_A0743 PF00529 HlyD membrane-fusion protein of T1SS VF_A0746 PF08241 Methyltransferase domain VF_A0747 PF00155 Aminotransferase class I and II VF_A0748 PF00202 Aminotransferase class-III VF_A0751 PF00158 Sigma-54 interaction domain VF_A0751 PF18024 Helix-turn-helix domain VF_A0752 PF08349 Protein of unknown function (DUF1722) VF_A0753 PF03441 FAD binding domain of DNA photolyase VF_A0753 PF00875 DNA photolyase VF_A0762 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VF_A0762 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_A0763 PF00106 short chain dehydrogenase VF_A0766 PF04542 Sigma-70 region 2 VF_A0766 PF04545 Sigma-70, region 4 VF_A0767 PF00034 Cytochrome c VF_A0768 PF00266 Aminotransferase class-V VF_A0770 PF07690 Major Facilitator Superfamily VF_A0771 PF03466 LysR substrate binding domain VF_A0771 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0777 PF02472 Biopolymer transport protein ExbD/TolR VF_A0778 PF01618 MotA/TolQ/ExbB proton channel family VF_A0779 PF01618 MotA/TolQ/ExbB proton channel family VF_A0781 PF01032 FecCD transport family VF_A0782 PF01497 Periplasmic binding protein VF_A0783 PF00005 ABC transporter VF_A0784 PF00593 TonB dependent receptor VF_A0784 PF07715 TonB-dependent Receptor Plug Domain VF_A0785 PF12833 Helix-turn-helix domain VF_A0786 PF00367 phosphotransferase system, EIIB VF_A0786 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VF_A0786 PF02378 Phosphotransferase system, EIIC VF_A0787 PF00005 ABC transporter VF_A0787 PF12848 ABC transporter VF_A0790 PF00132 Bacterial transferase hexapeptide (six repeats) VF_A0791 PF03466 LysR substrate binding domain VF_A0791 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0792 PF00561 alpha/beta hydrolase fold VF_A0793 PF03466 LysR substrate binding domain VF_A0793 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0794 PF00871 Acetokinase family VF_A0795 PF00072 Response regulator receiver domain VF_A0795 PF01339 CheB methylesterase VF_A0796 PF05230 MASE2 domain VF_A0796 PF00990 Diguanylate cyclase, GGDEF domain VF_A0797 PF00528 Binding-protein-dependent transport system inner membrane component VF_A0798 PF14785 Maltose transport system permease protein MalF P2 domain VF_A0798 PF00528 Binding-protein-dependent transport system inner membrane component VF_A0799 PF01547 Bacterial extracellular solute-binding protein VF_A0800 PF17912 MalK OB fold domain VF_A0800 PF00005 ABC transporter VF_A0801 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VF_A0801 PF00128 Alpha amylase, catalytic domain VF_A0802 PF01584 CheW-like domain VF_A0802 PF00072 Response regulator receiver domain VF_A0803 PF00375 Sodium:dicarboxylate symporter family VF_A0805 PF00534 Glycosyl transferases group 1 VF_A0805 PF08323 Starch synthase catalytic domain VF_A0806 PF00483 Nucleotidyl transferase VF_A0807 PF02698 DUF218 domain VF_A0808 PF00128 Alpha amylase, catalytic domain VF_A0808 PF02806 Alpha amylase, C-terminal all-beta domain VF_A0808 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VF_A0809 PF02446 4-alpha-glucanotransferase VF_A0810 PF00343 Carbohydrate phosphorylase VF_A0811 PF00196 Bacterial regulatory proteins, luxR family VF_A0811 PF17874 MalT-like TPR region VF_A0813 PF01226 Formate/nitrite transporter VF_A0815 PF00117 Glutamine amidotransferase class-I VF_A0815 PF13302 Acetyltransferase (GNAT) domain VF_A0815 PF13673 Acetyltransferase (GNAT) domain VF_A0815 PF00958 GMP synthase C terminal domain VF_A0815 PF03352 Methyladenine glycosylase VF_A0817 PF02630 SCO1/SenC VF_A0823 PF04954 Siderophore-interacting protein VF_A0823 PF08021 Siderophore-interacting FAD-binding domain VF_A0824 PF00005 ABC transporter VF_A0825 PF01032 FecCD transport family VF_A0826 PF01032 FecCD transport family VF_A0829 PF00474 Sodium:solute symporter family VF_A0832 PF01619 Proline dehydrogenase VF_A0832 PF14850 DNA-binding domain of Proline dehydrogenase VF_A0832 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VF_A0832 PF00171 Aldehyde dehydrogenase family VF_A0833 PF12833 Helix-turn-helix domain VF_A0834 PF03781 Sulfatase-modifying factor enzyme 1 VF_A0835 PF03649 Uncharacterised protein family (UPF0014) VF_A0836 PF00248 Aldo/keto reductase family VF_A0839 PF00491 Arginase family VF_A0840 PF17810 Arginine decarboxylase helical bundle domain VF_A0840 PF17944 Arginine decarboxylase C-terminal helical extension VF_A0840 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VF_A0842 PF08212 Lipocalin-like domain VF_A0847 PF04996 Succinylarginine dihydrolase VF_A0849 PF02798 Glutathione S-transferase, N-terminal domain VF_A0851 PF12833 Helix-turn-helix domain VF_A0851 PF01497 Periplasmic binding protein VF_A0852 PF00155 Aminotransferase class I and II VF_A0853 PF18027 Cytosolic carboxypeptidase N-terminal domain VF_A0853 PF00246 Zinc carboxypeptidase VF_A0858 PF01758 Sodium Bile acid symporter family VF_A0859 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0862 PF01590 GAF domain VF_A0862 PF00158 Sigma-54 interaction domain VF_A0863 PF03063 Prismane/CO dehydrogenase family VF_A0864 PF00970 Oxidoreductase FAD-binding domain VF_A0864 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_A0864 PF00175 Oxidoreductase NAD-binding domain VF_A0865 PF12729 Four helix bundle sensory module for signal transduction VF_A0865 PF00672 HAMP domain VF_A0865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0867 PF00482 Type II secretion system (T2SS), protein F VF_A0868 PF00437 Type II/IV secretion system protein VF_A0869 PF17456 Toxin-coregulated pilus protein S VF_A0875 PF05946 Toxin-coregulated pilus subunit TcpA VF_A0875 PF07963 Prokaryotic N-terminal methylation motif VF_A0879 PF00563 EAL domain VF_A0879 PF00196 Bacterial regulatory proteins, luxR family VF_A0881 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) VF_A0882 PF01270 Glycosyl hydrolases family 8 VF_A0883 PF03170 Bacterial cellulose synthase subunit VF_A0884 PF00535 Glycosyl transferase family 2 VF_A0884 PF03552 Cellulose synthase VF_A0884 PF07238 PilZ domain VF_A0886 PF10995 Cellulose biosynthesis GIL VF_A0887 PF11658 Cellulose biosynthesis protein BcsG VF_A0889 PF08534 Redoxin VF_A0890 PF08534 Redoxin VF_A0891 PF00672 HAMP domain VF_A0891 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0892 PF04074 YhcH/YjgK/YiaL VF_A0896 PF00529 HlyD membrane-fusion protein of T1SS VF_A0896 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_A0897 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0897 PF03466 LysR substrate binding domain VF_A0899 PF00884 Sulfatase VF_A0900 PF04055 Radical SAM superfamily VF_A0900 PF13186 Iron-sulfur cluster-binding domain VF_A0901 PF07726 ATPase family associated with various cellular activities (AAA) VF_A0901 PF17863 AAA lid domain VF_A0906 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_A0907 PF00873 AcrB/AcrD/AcrF family VF_A0909 PF02631 RecX family VF_A0910 PF02525 Flavodoxin-like fold VF_A0911 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0911 PF03466 LysR substrate binding domain VF_A0912 PF00005 ABC transporter VF_A0914 PF01595 Cyclin M transmembrane N-terminal domain VF_A0914 PF00571 CBS domain VF_A0914 PF03471 Transporter associated domain VF_A0915 PF00132 Bacterial transferase hexapeptide (six repeats) VF_A0915 PF14602 Hexapeptide repeat of succinyl-transferase VF_A0915 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal VF_A0916 PF01554 MatE VF_A0917 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VF_A0918 PF00175 Oxidoreductase NAD-binding domain VF_A0919 PF04443 Acyl-protein synthetase, LuxE VF_A0920 PF00296 Luciferase-like monooxygenase VF_A0921 PF00296 Luciferase-like monooxygenase VF_A0922 PF02273 Acyl transferase VF_A0923 PF05893 Acyl-CoA reductase (LuxC) VF_A0924 PF00765 Autoinducer synthase VF_A0925 PF00196 Bacterial regulatory proteins, luxR family VF_A0925 PF03472 Autoinducer binding domain VF_A0928 PF07670 Nucleoside recognition VF_A0929 PF07670 Nucleoside recognition VF_A0931 PF12833 Helix-turn-helix domain VF_A0932 PF01161 Phosphatidylethanolamine-binding protein VF_A0934 PF11756 Nitrous oxide-stimulated promoter VF_A0935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0935 PF03466 LysR substrate binding domain VF_A0937 PF13419 Haloacid dehalogenase-like hydrolase VF_A0940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VF_A0940 PF02378 Phosphotransferase system, EIIC VF_A0941 PF00294 pfkB family carbohydrate kinase VF_A0942 PF00381 PTS HPr component phosphorylation site VF_A0942 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VF_A0943 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VF_A0943 PF00356 Bacterial regulatory proteins, lacI family VF_A0951 PF01764 Lipase (class 3) VF_A0953 PF04717 Type VI secretion system, phage-baseplate injector VF_A0954 PF05638 Type VI secretion system effector, Hcp VF_A0958 PF03009 Glycerophosphoryl diester phosphodiesterase family VF_A0959 PF00990 Diguanylate cyclase, GGDEF domain VF_A0959 PF03707 Bacterial signalling protein N terminal repeat VF_A0959 PF00563 EAL domain VF_A0961 PF11230 Protein of unknown function (DUF3029) VF_A0962 PF04055 Radical SAM superfamily VF_A0963 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0963 PF03466 LysR substrate binding domain VF_A0964 PF01169 Uncharacterized protein family UPF0016 VF_A0965 PF00881 Nitroreductase family VF_A0966 PF03315 Serine dehydratase beta chain VF_A0966 PF03313 Serine dehydratase alpha chain VF_A0967 PF01773 Na+ dependent nucleoside transporter N-terminus VF_A0967 PF07670 Nucleoside recognition VF_A0967 PF07662 Na+ dependent nucleoside transporter C-terminus VF_A0968 PF01048 Phosphorylase superfamily VF_A0969 PF01979 Amidohydrolase family VF_A0971 PF00005 ABC transporter VF_A0972 PF01032 FecCD transport family VF_A0976 PF03707 Bacterial signalling protein N terminal repeat VF_A0976 PF00990 Diguanylate cyclase, GGDEF domain VF_A0976 PF00563 EAL domain VF_A0978 PF03466 LysR substrate binding domain VF_A0978 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A0984 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_A0984 PF01464 Transglycosylase SLT domain VF_A0987 PF01081 KDPG and KHG aldolase VF_A0988 PF00294 pfkB family carbohydrate kinase VF_A0989 PF01116 Fructose-bisphosphate aldolase class-II VF_A0990 PF01568 Molydopterin dinucleotide binding domain VF_A0990 PF18364 Molybdopterin oxidoreductase N-terminal domain VF_A0990 PF00384 Molybdopterin oxidoreductase VF_A0992 PF00884 Sulfatase VF_A0993 PF13186 Iron-sulfur cluster-binding domain VF_A0993 PF04055 Radical SAM superfamily VF_A0994 PF02278 Polysaccharide lyase family 8, super-sandwich domain VF_A0994 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain VF_A0994 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain VF_A0995 PF03239 Iron permease FTR1 family VF_A0996 PF07470 Glycosyl Hydrolase Family 88 VF_A0998 PF04962 KduI/IolB family VF_A0999 PF01979 Amidohydrolase family VF_A1000 PF03610 PTS system fructose IIA component VF_A1001 PF03613 PTS system mannose/fructose/sorbose family IID component VF_A1002 PF03609 PTS system sorbose-specific iic component VF_A1003 PF03830 PTS system sorbose subfamily IIB component VF_A1004 PF01380 SIS domain VF_A1005 PF08013 Tagatose 6 phosphate kinase VF_A1006 PF00455 DeoR C terminal sensor domain VF_A1006 PF08220 DeoR-like helix-turn-helix domain VF_A1007 PF00884 Sulfatase VF_A1008 PF06178 Oligogalacturonate-specific porin protein (KdgM) VF_A1010 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VF_A1010 PF03173 Putative carbohydrate binding domain VF_A1010 PF02838 Glycosyl hydrolase family 20, domain 2 VF_A1010 PF00728 Glycosyl hydrolase family 20, catalytic domain VF_A1011 PF06496 Protein of unknown function (DUF1097) VF_A1012 PF00563 EAL domain VF_A1012 PF01590 GAF domain VF_A1012 PF00360 Phytochrome region VF_A1012 PF00990 Diguanylate cyclase, GGDEF domain VF_A1014 PF00990 Diguanylate cyclase, GGDEF domain VF_A1014 PF00563 EAL domain VF_A1014 PF03707 Bacterial signalling protein N terminal repeat VF_A1014 PF13188 PAS domain VF_A1015 PF04539 Sigma-70 region 3 VF_A1015 PF04542 Sigma-70 region 2 VF_A1015 PF00140 Sigma-70 factor, region 1.2 VF_A1015 PF04545 Sigma-70, region 4 VF_A1016 PF00512 His Kinase A (phospho-acceptor) domain VF_A1016 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VF_A1016 PF01627 Hpt domain VF_A1016 PF00072 Response regulator receiver domain VF_A1016 PF00672 HAMP domain VF_A1016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A1017 PF00072 Response regulator receiver domain VF_A1020 PF01740 STAS domain VF_A1021 PF01389 OmpA-like transmembrane domain VF_A1021 PF00691 OmpA family VF_A1024 PF00158 Sigma-54 interaction domain VF_A1024 PF00072 Response regulator receiver domain VF_A1025 PF01627 Hpt domain VF_A1025 PF00672 HAMP domain VF_A1025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_A1025 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VF_A1025 PF00072 Response regulator receiver domain VF_A1025 PF00512 His Kinase A (phospho-acceptor) domain VF_A1026 PF02954 Bacterial regulatory protein, Fis family VF_A1026 PF00158 Sigma-54 interaction domain VF_A1026 PF00072 Response regulator receiver domain VF_A1027 PF13439 Glycosyltransferase Family 4 VF_A1027 PF00534 Glycosyl transferases group 1 VF_A1028 PF13579 Glycosyl transferase 4-like domain VF_A1028 PF00534 Glycosyl transferases group 1 VF_A1032 PF12464 Maltose acetyltransferase VF_A1032 PF00132 Bacterial transferase hexapeptide (six repeats) VF_A1032 PF14602 Hexapeptide repeat of succinyl-transferase VF_A1035 PF13579 Glycosyl transferase 4-like domain VF_A1035 PF00534 Glycosyl transferases group 1 VF_A1036 PF00535 Glycosyl transferase family 2 VF_A1037 PF02397 Bacterial sugar transferase VF_A1038 PF00990 Diguanylate cyclase, GGDEF domain VF_A1038 PF13188 PAS domain VF_A1038 PF03707 Bacterial signalling protein N terminal repeat VF_A1038 PF00563 EAL domain VF_A1043 PF00005 ABC transporter VF_A1044 PF13472 GDSL-like Lipase/Acylhydrolase family VF_A1045 PF04219 Protein of unknown function, DUF VF_A1046 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A1046 PF03466 LysR substrate binding domain VF_A1047 PF03448 MgtE intracellular N domain VF_A1047 PF01769 Divalent cation transporter VF_A1047 PF00571 CBS domain VF_A1048 PF03466 LysR substrate binding domain VF_A1048 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A1049 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VF_A1051 PF00582 Universal stress protein family VF_A1052 PF01740 STAS domain VF_A1052 PF00916 Sulfate permease family VF_A1054 PF13673 Acetyltransferase (GNAT) domain VF_A1061 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A1061 PF03466 LysR substrate binding domain VF_A1063 PF01047 MarR family VF_A1066 PF03466 LysR substrate binding domain VF_A1066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A1068 PF03575 Peptidase family S51 VF_A1069 PF00672 HAMP domain VF_A1069 PF12729 Four helix bundle sensory module for signal transduction VF_A1069 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A1071 PF08447 PAS fold VF_A1071 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A1072 PF12729 Four helix bundle sensory module for signal transduction VF_A1072 PF00672 HAMP domain VF_A1072 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A1073 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A1073 PF00672 HAMP domain VF_A1073 PF12729 Four helix bundle sensory module for signal transduction VF_A1079 PF01594 AI-2E family transporter VF_A1080 PF00892 EamA-like transporter family VF_A1082 PF12833 Helix-turn-helix domain VF_A1084 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A1086 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A1086 PF03466 LysR substrate binding domain VF_A1091 PF08402 TOBE domain VF_A1091 PF00005 ABC transporter VF_A1094 PF00313 'Cold-shock' DNA-binding domain VF_A1102 PF00589 Phage integrase family VF_A1103 PF13533 Biotin-lipoyl like VF_A1104 PF07690 Major Facilitator Superfamily VF_A1107 PF00924 Mechanosensitive ion channel VF_A1107 PF05552 Conserved TM helix VF_A1109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A1109 PF03466 LysR substrate binding domain VF_A1113 PF01037 Lrp/AsnC ligand binding domain VF_A1115 PF03466 LysR substrate binding domain VF_A1115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A1116 PF01810 LysE type translocator VF_A1122 PF00583 Acetyltransferase (GNAT) family VF_A1123 PF00202 Aminotransferase class-III VF_A1124 PF06339 Ectoine synthase VF_A1125 PF00696 Amino acid kinase family VF_A1125 PF13840 ACT domain VF_A1126 PF02311 AraC-like ligand binding domain VF_A1126 PF12833 Helix-turn-helix domain VF_A1142 PF03466 LysR substrate binding domain VF_A1142 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A1146 PF00696 Amino acid kinase family VF_A1148 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A1148 PF03466 LysR substrate binding domain VF_A1149 PF00873 AcrB/AcrD/AcrF family VF_A1152 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VF_A1152 PF00529 HlyD membrane-fusion protein of T1SS VF_A1153 PF05971 RNA methyltransferase VF_A1154 PF10928 Protein of unknown function (DUF2810) VF_A1155 PF00472 RF-1 domain VF_A1156 PF16124 RecQ zinc-binding VF_A1156 PF09382 RQC domain VF_A1156 PF00270 DEAD/DEAH box helicase VF_A1156 PF00570 HRDC domain VF_A1156 PF00271 Helicase conserved C-terminal domain VF_A1159 PF07690 Major Facilitator Superfamily VF_A1160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_A1160 PF03466 LysR substrate binding domain VF_A1161 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VF_A1161 PF01243 Pyridoxamine 5'-phosphate oxidase VF_A1164 PF05736 OprF membrane domain VF_A1164 PF00691 OmpA family VF_A1165 PF00005 ABC transporter VF_A1165 PF00664 ABC transporter transmembrane region VF_A1165 PF03412 Peptidase C39 family VF_A1168 PF00529 HlyD membrane-fusion protein of T1SS VF_A1169 PF05127 Helicase VF_A1169 PF13718 GNAT acetyltransferase 2 VF_A1171 PF08775 ParB family VF_A1171 PF02195 ParB-like nuclease domain VF_A1172 PF18607 ParA helix turn helix domain VF_A1172 PF13614 AAA domain VF_A1189 PF06968 Biotin and Thiamin Synthesis associated domain VF_A1189 PF04055 Radical SAM superfamily VF_B0007 PF04002 RadC-like JAB domain VF_B0018 PF01381 Helix-turn-helix VF_B0018 PF00717 Peptidase S24-like VF_B0029 PF00437 Type II/IV secretion system protein VF_B0038 PF04956 TrbC/VIRB2 family VF_B0039 PF03135 CagE, TrbE, VirB family, component of type IV transporter system VF_B0040 PF04335 VirB8 protein VF_B0041 PF03524 Conjugal transfer protein VF_B0042 PF03743 Bacterial conjugation TrbI-like protein VF_B0043 PF00437 Type II/IV secretion system protein VF_B0044 PF02534 Type IV secretory system Conjugative DNA transfer VF_B0045 PF00436 Single-strand binding protein family VF_B0046 PF01131 DNA topoisomerase VF_B0046 PF01751 Toprim domain VF_B0054 PF07996 Type IV secretion system proteins VF_B0056 PF05101 Type IV secretory pathway, VirB3-like protein