AMC99_RS00055 SM00530 Helix-turn-helix XRE-family like proteins AMC99_RS00060 SM00267 diguanylate cyclase AMC99_RS00095 SM00564 beta-propeller repeat AMC99_RS00100 SM00244 prohibitin homologues AMC99_RS00150 SM00470 ParB-like nuclease domain AMC99_RS00160 SM00530 Helix-turn-helix XRE-family like proteins AMC99_RS00270 SM00507 HNH nucleases AMC99_RS00275 SM00487 DEAD-like helicases superfamily AMC99_RS00275 SM00490 helicase superfamily c-terminal domain AMC99_RS00305 SM00530 Helix-turn-helix XRE-family like proteins AMC99_RS00365 SM00382 ATPases associated with a variety of cellular activities AMC99_RS00445 SM00422 helix_turn_helix, mercury resistance AMC99_RS00500 SM00746 metallochaperone-like domain AMC99_RS00515 SM00671 Sel1-like repeats. AMC99_RS00540 SM00671 Sel1-like repeats. AMC99_RS00560 SM00448 cheY-homologous receiver domain AMC99_RS00560 SM00862 Transcriptional regulatory protein, C terminal AMC99_RS00565 SM00387 Histidine kinase-like ATPases AMC99_RS00575 SM00028 Tetratricopeptide repeats AMC99_RS00580 SM00671 Sel1-like repeats. AMC99_RS00620 SM00947 Carbonic anhydrase AMC99_RS00640 SM00100 Cyclic nucleotide-monophosphate binding domain AMC99_RS00650 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMC99_RS00675 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS00690 SM00852 Probable molybdopterin binding domain AMC99_RS00695 SM00852 Probable molybdopterin binding domain AMC99_RS00780 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMC99_RS00790 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMC99_RS00790 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMC99_RS00835 SM00382 ATPases associated with a variety of cellular activities AMC99_RS00910 SM00984 UDP binding domain AMC99_RS00945 SM00382 ATPases associated with a variety of cellular activities AMC99_RS00960 SM00382 ATPases associated with a variety of cellular activities AMC99_RS00985 SM01409 AMC99_RS00985 AMC99_RS00990 SM00155 Phospholipase D. Active site motifs. AMC99_RS00995 SM00382 ATPases associated with a variety of cellular activities AMC99_RS01050 SM00347 helix_turn_helix multiple antibiotic resistance protein AMC99_RS01060 SM00093 SERine Proteinase INhibitors AMC99_RS01065 SM00382 ATPases associated with a variety of cellular activities AMC99_RS01125 SM00478 endonuclease III AMC99_RS01125 SM00525 AMC99_RS01125 AMC99_RS01165 SM00760 Bacterial dnaA protein helix-turn-helix domain AMC99_RS01175 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMC99_RS01175 SM01232 AMC99_RS01175 AMC99_RS01215 SM00862 Transcriptional regulatory protein, C terminal AMC99_RS01240 SM00978 AMC99_RS01240 AMC99_RS01245 SM00925 MltA specific insert domain AMC99_RS01265 SM00850 LytTr DNA-binding domain AMC99_RS01295 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMC99_RS01305 SM00382 ATPases associated with a variety of cellular activities AMC99_RS01325 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMC99_RS01330 SM00450 Rhodanese Homology Domain AMC99_RS01420 SM00382 ATPases associated with a variety of cellular activities AMC99_RS01465 SM00587 ZnF_C4 abd HLH domain containing kinases domain AMC99_RS01515 SM00911 HWE histidine kinase AMC99_RS01515 SM01079 AMC99_RS01515 AMC99_RS01520 SM00448 cheY-homologous receiver domain AMC99_RS01525 SM00100 Cyclic nucleotide-monophosphate binding domain AMC99_RS01525 SM00419 helix_turn_helix, cAMP Regulatory protein AMC99_RS01530 SM00448 cheY-homologous receiver domain AMC99_RS01595 SM00862 Transcriptional regulatory protein, C terminal AMC99_RS01620 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMC99_RS01635 SM01018 B12 binding domain AMC99_RS01705 SM00354 helix_turn _helix lactose operon repressor AMC99_RS01710 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS01760 SM00419 helix_turn_helix, cAMP Regulatory protein AMC99_RS01830 SM00878 Biotin carboxylase C-terminal domain AMC99_RS01955 SM00357 Cold shock protein domain AMC99_RS02010 SM00151 SWI complex, BAF60b domains AMC99_RS02050 SM00829 Enoylreductase AMC99_RS02080 SM00072 Guanylate kinase homologues. AMC99_RS02165 SM00271 DnaJ molecular chaperone homology domain AMC99_RS02210 SM01263 AMC99_RS02210 AMC99_RS02220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMC99_RS02220 SM00954 Region found in RelA / SpoT proteins AMC99_RS02230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_RS02230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMC99_RS02375 SM00354 helix_turn _helix lactose operon repressor AMC99_RS02440 SM00858 AMC99_RS02440 AMC99_RS02470 SM00100 Cyclic nucleotide-monophosphate binding domain AMC99_RS02470 SM00116 Domain in cystathionine beta-synthase and other proteins. AMC99_RS02475 SM00479 AMC99_RS02475 AMC99_RS02490 SM00091 PAS domain AMC99_RS02490 SM00387 Histidine kinase-like ATPases AMC99_RS02490 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS02490 SM00448 cheY-homologous receiver domain AMC99_RS02495 SM00421 helix_turn_helix, Lux Regulon AMC99_RS02495 SM00448 cheY-homologous receiver domain AMC99_RS02535 SM00316 Ribosomal protein S1-like RNA-binding domain AMC99_RS02560 SM00421 helix_turn_helix, Lux Regulon AMC99_RS02565 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMC99_RS02565 SM00465 GIY-YIG type nucleases (URI domain) AMC99_RS02570 SM00487 DEAD-like helicases superfamily AMC99_RS02570 SM00490 helicase superfamily c-terminal domain AMC99_RS02585 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMC99_RS02625 SM00822 AMC99_RS02625 AMC99_RS02640 SM00271 DnaJ molecular chaperone homology domain AMC99_RS02710 SM00732 Likely ribonuclease with RNase H fold. AMC99_RS02800 SM00905 Dihydroneopterin aldolase AMC99_RS02810 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS02825 SM00100 Cyclic nucleotide-monophosphate binding domain AMC99_RS02825 SM00419 helix_turn_helix, cAMP Regulatory protein AMC99_RS02915 SM00564 beta-propeller repeat AMC99_RS02960 SM00422 helix_turn_helix, mercury resistance AMC99_RS02970 SM00491 AMC99_RS02970 AMC99_RS02980 SM00344 helix_turn_helix ASNC type AMC99_RS03020 SM00357 Cold shock protein domain AMC99_RS03045 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMC99_RS03075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMC99_RS03085 SM00382 ATPases associated with a variety of cellular activities AMC99_RS03090 SM00267 diguanylate cyclase AMC99_RS03115 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS03120 SM00344 helix_turn_helix ASNC type AMC99_RS03140 SM00878 Biotin carboxylase C-terminal domain AMC99_RS03170 SM01323 AMC99_RS03170 AMC99_RS03190 SM00530 Helix-turn-helix XRE-family like proteins AMC99_RS03200 SM00986 Uracil DNA glycosylase superfamily AMC99_RS03200 SM00987 UreE urease accessory protein, C-terminal domain AMC99_RS03205 SM00382 ATPases associated with a variety of cellular activities AMC99_RS03220 SM00448 cheY-homologous receiver domain AMC99_RS03220 SM00862 Transcriptional regulatory protein, C terminal AMC99_RS03225 SM00387 Histidine kinase-like ATPases AMC99_RS03235 SM00830 Chorismate mutase type II AMC99_RS03250 SM00487 DEAD-like helicases superfamily AMC99_RS03250 SM00490 helicase superfamily c-terminal domain AMC99_RS03250 SM00847 Helicase associated domain (HA2) Add an annotation AMC99_RS03270 SM00382 ATPases associated with a variety of cellular activities AMC99_RS03285 SM00382 ATPases associated with a variety of cellular activities AMC99_RS03285 SM00464 Found in ATP-dependent protease La (LON) AMC99_RS03290 SM00411 bacterial (prokaryotic) histone like domain AMC99_RS03300 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMC99_RS03380 SM00935 Outer membrane protein (OmpH-like) AMC99_RS03405 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMC99_RS03415 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMC99_RS03465 SM00382 ATPases associated with a variety of cellular activities AMC99_RS03465 SM00962 SRP54-type protein, GTPase domain AMC99_RS03465 SM00963 SRP54-type protein, helical bundle domain AMC99_RS03470 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS03480 SM00052 Putative diguanylate phosphodiesterase AMC99_RS03480 SM00267 diguanylate cyclase AMC99_RS03520 SM00341 Helicase and RNase D C-terminal AMC99_RS03520 SM00474 3'-5' exonuclease AMC99_RS03535 SM00825 Beta-ketoacyl synthase AMC99_RS03595 SM01387 AMC99_RS03595 AMC99_RS03600 SM00316 Ribosomal protein S1-like RNA-binding domain AMC99_RS03600 SM00322 K homology RNA-binding domain AMC99_RS03635 SM00992 Hemimethylated DNA-binding protein YccV like AMC99_RS03695 SM00450 Rhodanese Homology Domain AMC99_RS03715 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMC99_RS03725 SM00849 Metallo-beta-lactamase superfamily AMC99_RS03750 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMC99_RS03810 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS03815 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS03840 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMC99_RS03890 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMC99_RS03890 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMC99_RS03930 SM00448 cheY-homologous receiver domain AMC99_RS03945 SM00327 von Willebrand factor (vWF) type A domain AMC99_RS03995 SM00487 DEAD-like helicases superfamily AMC99_RS03995 SM00490 helicase superfamily c-terminal domain AMC99_RS04020 SM00460 Transglutaminase/protease-like homologues AMC99_RS04030 SM00421 helix_turn_helix, Lux Regulon AMC99_RS04040 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMC99_RS04090 SM00382 ATPases associated with a variety of cellular activities AMC99_RS04180 SM00650 Ribosomal RNA adenine dimethylases AMC99_RS04215 SM00562 AMC99_RS04215 AMC99_RS04295 SM00448 cheY-homologous receiver domain AMC99_RS04380 SM01207 AMC99_RS04380 AMC99_RS04395 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMC99_RS04395 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMC99_RS04395 SM00493 AMC99_RS04395 AMC99_RS04405 SM00448 cheY-homologous receiver domain AMC99_RS04415 SM01022 AMC99_RS04415 AMC99_RS04425 SM00358 Double-stranded RNA binding motif AMC99_RS04425 SM00535 Ribonuclease III family AMC99_RS04445 SM00487 DEAD-like helicases superfamily AMC99_RS04445 SM00490 helicase superfamily c-terminal domain AMC99_RS04460 SM00530 Helix-turn-helix XRE-family like proteins AMC99_RS04495 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS04495 SM00876 Biotin and Thiamin Synthesis associated domain AMC99_RS04505 SM00878 Biotin carboxylase C-terminal domain AMC99_RS04580 SM00155 Phospholipase D. Active site motifs. AMC99_RS04600 SM00996 S-adenosyl-L-homocysteine hydrolase AMC99_RS04600 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMC99_RS04605 SM00091 PAS domain AMC99_RS04605 SM00387 Histidine kinase-like ATPases AMC99_RS04605 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS04660 SM00957 SecA DEAD-like domain AMC99_RS04660 SM00958 SecA preprotein cross-linking domain AMC99_RS04680 SM00052 Putative diguanylate phosphodiesterase AMC99_RS04685 SM00487 DEAD-like helicases superfamily AMC99_RS04685 SM00490 helicase superfamily c-terminal domain AMC99_RS04685 SM00982 AMC99_RS04685 AMC99_RS04685 SM01058 CarD-like/TRCF domain AMC99_RS04700 SM00487 DEAD-like helicases superfamily AMC99_RS04700 SM00490 helicase superfamily c-terminal domain AMC99_RS04705 SM00226 Low molecular weight phosphatase family AMC99_RS04715 SM00822 AMC99_RS04715 AMC99_RS04735 SM00861 Transketolase, pyrimidine binding domain AMC99_RS04770 SM00861 Transketolase, pyrimidine binding domain AMC99_RS04775 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMC99_RS04825 SM00841 Elongation factor P, C-terminal AMC99_RS04825 SM01185 AMC99_RS04825 AMC99_RS04860 SM00530 Helix-turn-helix XRE-family like proteins AMC99_RS04875 SM00387 Histidine kinase-like ATPases AMC99_RS04880 SM00382 ATPases associated with a variety of cellular activities AMC99_RS04880 SM00448 cheY-homologous receiver domain AMC99_RS04930 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS04935 SM00986 Uracil DNA glycosylase superfamily AMC99_RS04935 SM00987 UreE urease accessory protein, C-terminal domain AMC99_RS04940 SM00481 DNA polymerase alpha chain like domain AMC99_RS04955 SM00448 cheY-homologous receiver domain AMC99_RS04955 SM00862 Transcriptional regulatory protein, C terminal AMC99_RS04965 SM00382 ATPases associated with a variety of cellular activities AMC99_RS04990 SM00387 Histidine kinase-like ATPases AMC99_RS04990 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS05030 SM00327 von Willebrand factor (vWF) type A domain AMC99_RS05035 SM00917 LeuA allosteric (dimerisation) domain AMC99_RS05060 SM00867 YceI-like domain AMC99_RS05140 SM00382 ATPases associated with a variety of cellular activities AMC99_RS05175 SM00363 S4 RNA-binding domain AMC99_RS05175 SM01390 AMC99_RS05175 AMC99_RS05180 SM00830 Chorismate mutase type II AMC99_RS05215 SM00400 zinc finger AMC99_RS05215 SM00493 AMC99_RS05215 AMC99_RS05230 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMC99_RS05240 SM00851 MGS-like domain AMC99_RS05240 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMC99_RS05280 SM01192 AMC99_RS05280 AMC99_RS05280 SM01193 AMC99_RS05280 AMC99_RS05340 SM00853 MutL C terminal dimerisation domain AMC99_RS05340 SM01340 AMC99_RS05340 AMC99_RS05395 SM00530 Helix-turn-helix XRE-family like proteins AMC99_RS05430 SM00422 helix_turn_helix, mercury resistance AMC99_RS05495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_RS05500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_RS05505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_RS05510 SM00382 ATPases associated with a variety of cellular activities AMC99_RS05520 SM00091 PAS domain AMC99_RS05535 SM00387 Histidine kinase-like ATPases AMC99_RS05535 SM00433 TopoisomeraseII AMC99_RS05570 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS05575 SM00198 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. AMC99_RS05625 SM00271 DnaJ molecular chaperone homology domain AMC99_RS05630 SM00671 Sel1-like repeats. AMC99_RS05640 SM00382 ATPases associated with a variety of cellular activities AMC99_RS05660 SM01005 Alanine racemase, C-terminal domain AMC99_RS05670 SM00946 Prolyl-tRNA synthetase, C-terminal AMC99_RS05675 SM00955 AMC99_RS05675 AMC99_RS05730 SM00936 Penicillin-binding protein 5, C-terminal domain AMC99_RS05755 SM00849 Metallo-beta-lactamase superfamily AMC99_RS05775 SM00382 ATPases associated with a variety of cellular activities AMC99_RS05775 SM00448 cheY-homologous receiver domain AMC99_RS05780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMC99_RS05780 SM00387 Histidine kinase-like ATPases AMC99_RS05780 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS05785 SM00382 ATPases associated with a variety of cellular activities AMC99_RS05785 SM00448 cheY-homologous receiver domain AMC99_RS05790 SM00387 Histidine kinase-like ATPases AMC99_RS05790 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS05815 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS05820 SM00947 Carbonic anhydrase AMC99_RS05835 SM00434 DNA Topoisomerase IV AMC99_RS05880 SM00861 Transketolase, pyrimidine binding domain AMC99_RS05990 SM00852 Probable molybdopterin binding domain AMC99_RS06020 SM00387 Histidine kinase-like ATPases AMC99_RS06050 SM00849 Metallo-beta-lactamase superfamily AMC99_RS06100 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMC99_RS06110 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMC99_RS06180 SM00862 Transcriptional regulatory protein, C terminal AMC99_RS06200 SM00937 AMC99_RS06200 AMC99_RS06215 SM00646 AMC99_RS06215 AMC99_RS06410 SM00852 Probable molybdopterin binding domain AMC99_RS06415 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS06440 SM00481 DNA polymerase alpha chain like domain AMC99_RS06460 SM00382 ATPases associated with a variety of cellular activities AMC99_RS06505 SM00014 Acid phosphatase homologues AMC99_RS06530 SM00028 Tetratricopeptide repeats AMC99_RS06540 SM00116 Domain in cystathionine beta-synthase and other proteins. AMC99_RS06540 SM01240 AMC99_RS06540 AMC99_RS06615 SM00849 Metallo-beta-lactamase superfamily AMC99_RS06635 SM00292 breast cancer carboxy-terminal domain AMC99_RS06635 SM00532 Ligase N family AMC99_RS06700 SM00052 Putative diguanylate phosphodiesterase AMC99_RS06700 SM00267 diguanylate cyclase AMC99_RS06705 SM00052 Putative diguanylate phosphodiesterase AMC99_RS06705 SM00267 diguanylate cyclase AMC99_RS06740 SM00829 Enoylreductase AMC99_RS06750 SM00480 DNA polymerase III beta subunit AMC99_RS06760 SM00822 AMC99_RS06760 AMC99_RS06765 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMC99_RS06820 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMC99_RS06820 SM00911 HWE histidine kinase AMC99_RS06860 SM00347 helix_turn_helix multiple antibiotic resistance protein AMC99_RS06880 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMC99_RS06920 SM00382 ATPases associated with a variety of cellular activities AMC99_RS06920 SM00962 SRP54-type protein, GTPase domain AMC99_RS06920 SM00963 SRP54-type protein, helical bundle domain AMC99_RS06955 SM00316 Ribosomal protein S1-like RNA-binding domain AMC99_RS06960 SM00849 Metallo-beta-lactamase superfamily AMC99_RS06965 SM00829 Enoylreductase AMC99_RS07015 SM00998 Adenylosuccinate lyase C-terminus AMC99_RS07025 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMC99_RS07070 SM00363 S4 RNA-binding domain AMC99_RS07090 SM00487 DEAD-like helicases superfamily AMC99_RS07090 SM00490 helicase superfamily c-terminal domain AMC99_RS07115 SM00448 cheY-homologous receiver domain AMC99_RS07125 SM01329 AMC99_RS07125 AMC99_RS07145 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMC99_RS07155 SM00382 ATPases associated with a variety of cellular activities AMC99_RS07160 SM00387 Histidine kinase-like ATPases AMC99_RS07160 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS07160 SM00448 cheY-homologous receiver domain AMC99_RS07175 SM01130 AMC99_RS07175 AMC99_RS07260 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AMC99_RS07315 SM00382 ATPases associated with a variety of cellular activities AMC99_RS07340 SM00052 Putative diguanylate phosphodiesterase AMC99_RS07340 SM00267 diguanylate cyclase AMC99_RS07350 SM00881 CoA binding domain AMC99_RS07355 SM00861 Transketolase, pyrimidine binding domain AMC99_RS07375 SM00342 helix_turn_helix, arabinose operon control protein AMC99_RS07415 SM00662 RNA polymerases D AMC99_RS07490 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMC99_RS07495 SM01374 AMC99_RS07495 AMC99_RS07515 SM00322 K homology RNA-binding domain AMC99_RS07530 SM01382 AMC99_RS07530 AMC99_RS07530 SM01383 AMC99_RS07530 AMC99_RS07550 SM01403 AMC99_RS07550 AMC99_RS07560 SM00838 Elongation factor G C-terminus AMC99_RS07560 SM00889 Elongation factor G, domain IV AMC99_RS07600 SM00382 ATPases associated with a variety of cellular activities AMC99_RS07625 SM00858 AMC99_RS07625 AMC99_RS07660 SM00382 ATPases associated with a variety of cellular activities AMC99_RS07675 SM00028 Tetratricopeptide repeats AMC99_RS07735 SM01329 AMC99_RS07735 AMC99_RS07755 SM00363 S4 RNA-binding domain AMC99_RS07770 SM00450 Rhodanese Homology Domain AMC99_RS07815 SM00267 diguanylate cyclase AMC99_RS07830 SM00932 Scaffold protein Nfu/NifU N terminal AMC99_RS07860 SM00563 Phosphate acyltransferases AMC99_RS07870 SM01091 Transporter associated domain AMC99_RS07895 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS07915 SM00924 MgtE intracellular N domain AMC99_RS07945 SM00478 endonuclease III AMC99_RS07945 SM00525 AMC99_RS07945 AMC99_RS07975 SM00422 helix_turn_helix, mercury resistance AMC99_RS07980 SM00411 bacterial (prokaryotic) histone like domain AMC99_RS08000 SM00849 Metallo-beta-lactamase superfamily AMC99_RS08035 SM00840 AMC99_RS08035 AMC99_RS08055 SM00327 von Willebrand factor (vWF) type A domain AMC99_RS08070 SM00487 DEAD-like helicases superfamily AMC99_RS08070 SM00490 helicase superfamily c-terminal domain AMC99_RS08100 SM00342 helix_turn_helix, arabinose operon control protein AMC99_RS08130 SM00382 ATPases associated with a variety of cellular activities AMC99_RS08180 SM00822 AMC99_RS08180 AMC99_RS08190 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMC99_RS08195 SM00861 Transketolase, pyrimidine binding domain AMC99_RS08225 SM00316 Ribosomal protein S1-like RNA-binding domain AMC99_RS08225 SM00322 K homology RNA-binding domain AMC99_RS08250 SM00382 ATPases associated with a variety of cellular activities AMC99_RS08330 SM00829 Enoylreductase AMC99_RS08420 SM01211 AMC99_RS08420 AMC99_RS08425 SM00052 Putative diguanylate phosphodiesterase AMC99_RS08425 SM00267 diguanylate cyclase AMC99_RS08500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMC99_RS08515 SM00710 Parallel beta-helix repeats AMC99_RS08535 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMC99_RS08535 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMC99_RS08540 SM00382 ATPases associated with a variety of cellular activities AMC99_RS08540 SM00448 cheY-homologous receiver domain AMC99_RS08545 SM00822 AMC99_RS08545 AMC99_RS08610 SM00434 DNA Topoisomerase IV AMC99_RS08665 SM00448 cheY-homologous receiver domain AMC99_RS08665 SM00862 Transcriptional regulatory protein, C terminal AMC99_RS08670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMC99_RS08670 SM00387 Histidine kinase-like ATPases AMC99_RS08670 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS08695 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMC99_RS08720 SM00493 AMC99_RS08720 AMC99_RS08740 SM00829 Enoylreductase AMC99_RS08745 SM00870 AMC99_RS08745 AMC99_RS08795 SM00788 Adenylosuccinate synthetase AMC99_RS08870 SM00382 ATPases associated with a variety of cellular activities AMC99_RS08945 SM00943 Bifunctional DNA primase/polymerase, N-terminal AMC99_RS08985 SM00450 Rhodanese Homology Domain AMC99_RS09035 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMC99_RS09075 SM00864 Tubulin/FtsZ family, GTPase domain AMC99_RS09075 SM00865 Tubulin/FtsZ family, C-terminal domain AMC99_RS09080 SM00842 Cell division protein FtsA AMC99_RS09180 SM00478 endonuclease III AMC99_RS09205 SM00382 ATPases associated with a variety of cellular activities AMC99_RS09235 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMC99_RS09240 SM00938 Nitrogen regulatory protein P-II AMC99_RS09245 SM01230 AMC99_RS09245 AMC99_RS09280 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AMC99_RS09355 SM00836 DALR anticodon binding domain AMC99_RS09355 SM01016 Arginyl tRNA synthetase N terminal dom AMC99_RS09395 SM00858 AMC99_RS09395 AMC99_RS09425 SM00347 helix_turn_helix multiple antibiotic resistance protein AMC99_RS09440 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMC99_RS09460 SM00028 Tetratricopeptide repeats AMC99_RS09465 SM00382 ATPases associated with a variety of cellular activities AMC99_RS09465 SM01086 C-terminal, D2-small domain, of ClpB protein AMC99_RS09475 SM00382 ATPases associated with a variety of cellular activities AMC99_RS09490 SM00342 helix_turn_helix, arabinose operon control protein AMC99_RS09525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_RS09545 SM00845 GatB domain AMC99_RS09620 SM00382 ATPases associated with a variety of cellular activities AMC99_RS09690 SM00984 UDP binding domain AMC99_RS09695 SM00020 Trypsin-like serine protease AMC99_RS09695 SM00869 Autotransporter beta-domain AMC99_RS09705 SM00644 AMC99_RS09705 AMC99_RS09715 SM00232 JAB/MPN domain AMC99_RS09720 SM00363 S4 RNA-binding domain AMC99_RS09765 SM00382 ATPases associated with a variety of cellular activities AMC99_RS09765 SM00994 ClpX C4-type zinc finger AMC99_RS09765 SM01086 C-terminal, D2-small domain, of ClpB protein AMC99_RS09815 SM00671 Sel1-like repeats. AMC99_RS09830 SM00028 Tetratricopeptide repeats AMC99_RS09905 SM00729 Elongator protein 3, MiaB family, Radical SAM AMC99_RS09920 SM00460 Transglutaminase/protease-like homologues AMC99_RS09970 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMC99_RS09990 SM00849 Metallo-beta-lactamase superfamily AMC99_RS10070 SM01007 Class II Aldolase and Adducin N-terminal domain AMC99_RS10080 SM00073 Histidine Phosphotransfer domain AMC99_RS10080 SM00260 Two component signalling adaptor domain AMC99_RS10080 SM00387 Histidine kinase-like ATPases AMC99_RS10080 SM01231 AMC99_RS10080 AMC99_RS10085 SM00260 Two component signalling adaptor domain AMC99_RS10090 SM00448 cheY-homologous receiver domain AMC99_RS10095 SM00448 cheY-homologous receiver domain AMC99_RS10100 SM00138 Methyltransferase, chemotaxis proteins AMC99_RS10105 SM00052 Putative diguanylate phosphodiesterase AMC99_RS10105 SM00267 diguanylate cyclase AMC99_RS10110 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMC99_RS10145 SM00829 Enoylreductase AMC99_RS10155 SM00849 Metallo-beta-lactamase superfamily AMC99_RS10185 SM00822 AMC99_RS10185 AMC99_RS10195 SM00198 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. AMC99_RS10205 SM00862 Transcriptional regulatory protein, C terminal AMC99_RS10210 SM00829 Enoylreductase AMC99_RS10235 SM00448 cheY-homologous receiver domain AMC99_RS10245 SM00567 E-Z type HEAT repeats AMC99_RS10260 SM00448 cheY-homologous receiver domain AMC99_RS10265 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMC99_RS10265 SM00091 PAS domain AMC99_RS10265 SM00387 Histidine kinase-like ATPases AMC99_RS10265 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS10295 SM00052 Putative diguanylate phosphodiesterase AMC99_RS10295 SM00267 diguanylate cyclase AMC99_RS10295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMC99_RS10310 SM00671 Sel1-like repeats. AMC99_RS10365 SM00382 ATPases associated with a variety of cellular activities AMC99_RS10385 SM00382 ATPases associated with a variety of cellular activities AMC99_RS10385 SM01086 C-terminal, D2-small domain, of ClpB protein AMC99_RS10420 SM00899 AMC99_RS10420 AMC99_RS10430 SM00248 ankyrin repeats AMC99_RS10510 SM00347 helix_turn_helix multiple antibiotic resistance protein AMC99_RS10565 SM00530 Helix-turn-helix XRE-family like proteins AMC99_RS10640 SM00852 Probable molybdopterin binding domain AMC99_RS10660 SM00649 Ribosomal protein L11/L12 AMC99_RS10705 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMC99_RS10705 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMC99_RS10790 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMC99_RS10790 SM00448 cheY-homologous receiver domain AMC99_RS10790 SM00911 HWE histidine kinase AMC99_RS10805 SM00091 PAS domain AMC99_RS10805 SM00387 Histidine kinase-like ATPases AMC99_RS10805 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS10805 SM00448 cheY-homologous receiver domain AMC99_RS10850 SM00138 Methyltransferase, chemotaxis proteins AMC99_RS10850 SM00911 HWE histidine kinase AMC99_RS10915 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMC99_RS10925 SM00244 prohibitin homologues AMC99_RS10930 SM00244 prohibitin homologues AMC99_RS10935 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMC99_RS10995 SM00563 Phosphate acyltransferases AMC99_RS11010 SM00382 ATPases associated with a variety of cellular activities AMC99_RS11035 SM00344 helix_turn_helix ASNC type AMC99_RS11050 SM00829 Enoylreductase AMC99_RS11095 SM00464 Found in ATP-dependent protease La (LON) AMC99_RS11140 SM00894 Excalibur calcium-binding domain AMC99_RS11195 SM00382 ATPases associated with a variety of cellular activities AMC99_RS11225 SM00478 endonuclease III AMC99_RS11225 SM00525 AMC99_RS11225 AMC99_RS11230 SM00478 endonuclease III AMC99_RS11265 SM00387 Histidine kinase-like ATPases AMC99_RS11265 SM00433 TopoisomeraseII AMC99_RS11290 SM00563 Phosphate acyltransferases AMC99_RS11310 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMC99_RS11310 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMC99_RS11310 SM00091 PAS domain AMC99_RS11310 SM00911 HWE histidine kinase AMC99_RS11320 SM00382 ATPases associated with a variety of cellular activities AMC99_RS11345 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMC99_RS11380 SM00843 AMC99_RS11380 AMC99_RS11385 SM00267 diguanylate cyclase AMC99_RS11415 SM00448 cheY-homologous receiver domain AMC99_RS11415 SM00862 Transcriptional regulatory protein, C terminal AMC99_RS11420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMC99_RS11420 SM00387 Histidine kinase-like ATPases AMC99_RS11420 SM00388 His Kinase A (phosphoacceptor) domain AMC99_RS11425 SM00382 ATPases associated with a variety of cellular activities AMC99_RS11455 SM00098 Alkaline phosphatase homologues AMC99_RS11485 SM00244 prohibitin homologues AMC99_RS11550 SM00382 ATPases associated with a variety of cellular activities AMC99_RS11625 SM00986 Uracil DNA glycosylase superfamily AMC99_RS11625 SM00987 UreE urease accessory protein, C-terminal domain AMC99_RS11630 SM00474 3'-5' exonuclease AMC99_RS11675 SM00822 AMC99_RS11675 AMC99_RS11745 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMC99_RS11760 SM00530 Helix-turn-helix XRE-family like proteins AMC99_RS11810 SM00382 ATPases associated with a variety of cellular activities AMC99_RS11855 SM00411 bacterial (prokaryotic) histone like domain AMC99_RS11860 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMC99_RS11895 SM00861 Transketolase, pyrimidine binding domain AMC99_RS11910 SM00798 AICARFT/IMPCHase bienzyme AMC99_RS11910 SM00851 MGS-like domain AMC99_RS11960 SM00354 helix_turn _helix lactose operon repressor AMC99_RS11970 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMC99_RS12030 SM00028 Tetratricopeptide repeats AMC99_RS12055 SM00448 cheY-homologous receiver domain AMC99_RS12055 SM00850 LytTr DNA-binding domain AMC99_RS12105 SM01209 AMC99_RS12105 AMC99_RS12105 SM01210 AMC99_RS12105 AMC99_RS12195 SM00342 helix_turn_helix, arabinose operon control protein AMC99_RS12290 SM00448 cheY-homologous receiver domain AMC99_RS12290 SM00850 LytTr DNA-binding domain AMC99_RS12295 SM00387 Histidine kinase-like ATPases AMC99_RS12330 SM00116 Domain in cystathionine beta-synthase and other proteins. AMC99_RS12370 SM00479 AMC99_RS12370 AMC99_RS12405 SM00357 Cold shock protein domain AMC99_RS12405 SM00382 ATPases associated with a variety of cellular activities AMC99_RS12405 SM00959 Rho termination factor, N-terminal domain AMC99_RS12410 SM01034 Sensors of blue-light using FAD AMC99_RS12440 SM01228 AMC99_RS12440 AMC99_RS12455 SM00470 ParB-like nuclease domain AMC99_RS12480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMC99_RS12510 SM01058 CarD-like/TRCF domain AMC99_RS12520 SM00363 S4 RNA-binding domain AMC99_RS12525 SM00490 helicase superfamily c-terminal domain AMC99_RS12535 SM01004 Delta-aminolevulinic acid dehydratase AMC99_RS12555 SM01152 AMC99_RS12555 AMC99_RS12580 SM00382 ATPases associated with a variety of cellular activities AMC99_RS12580 SM01086 C-terminal, D2-small domain, of ClpB protein AMC99_RS12590 SM00829 Enoylreductase AMC99_RS12645 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMC99_RS12645 SM00245 tail specific protease AMC99_RS12750 SM00984 UDP binding domain AMC99_RS12790 SM00271 DnaJ molecular chaperone homology domain AMC99_RS12865 SM00893 Electron transfer flavoprotein domain AMC99_RS12870 SM00893 Electron transfer flavoprotein domain AMC99_RS12895 SM01091 Transporter associated domain AMC99_RS12915 SM00904 Riboflavin kinase AMC99_RS12935 SM01001 AIR carboxylase AMC99_RS12940 SM00855 Phosphoglycerate mutase family AMC99_RS13030 SM00421 helix_turn_helix, Lux Regulon AMC99_RS13045 SM00271 DnaJ molecular chaperone homology domain AMC99_RS13060 SM00487 DEAD-like helicases superfamily AMC99_RS13060 SM00490 helicase superfamily c-terminal domain AMC99_RS13120 SM01400 AMC99_RS13120 AMC99_RS13125 SM00342 helix_turn_helix, arabinose operon control protein AMC99_RS13135 SM00822 AMC99_RS13135 AMC99_RS13150 SM00342 helix_turn_helix, arabinose operon control protein AMC99_RS13160 SM00342 helix_turn_helix, arabinose operon control protein AMC99_RS13170 SM00873 B3/4 domain AMC99_RS13170 SM00874 tRNA synthetase B5 domain AMC99_RS13170 SM00896 Ferredoxin-fold anticodon binding domain AMC99_RS13205 SM00938 Nitrogen regulatory protein P-II AMC99_RS13255 SM00357 Cold shock protein domain AMC99_RS13335 SM00100 Cyclic nucleotide-monophosphate binding domain AMC99_RS13335 SM00419 helix_turn_helix, cAMP Regulatory protein AMC99_RS13360 SM00448 cheY-homologous receiver domain AMC99_RS13390 SM00671 Sel1-like repeats. AMC99_RS13430 SM00507 HNH nucleases AMC99_RS13470 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMC99_RS13470 SM00534 ATPase domain of DNA mismatch repair MUTS family AMC99_RS13475 SM00919 Malic enzyme, NAD binding domain AMC99_RS13475 SM01274 AMC99_RS13475 AMC99_RS13500 SM00448 cheY-homologous receiver domain AMC99_RS13500 SM00862 Transcriptional regulatory protein, C terminal AMC99_RS13515 SM00382 ATPases associated with a variety of cellular activities AMC99_RS13545 SM00937 AMC99_RS13545 AMC99_RS13580 SM00882 Coenzyme A transferase AMC99_RS13590 SM00882 Coenzyme A transferase AMC99_RS13595 SM00382 ATPases associated with a variety of cellular activities AMC99_RS13595 SM01072 Cell division protein 48 (CDC48) domain 2 AMC99_RS13595 SM01073 Cell division protein 48 (CDC48) N-terminal domain AMC99_RS13605 SM00911 HWE histidine kinase AMC99_RS13610 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMC99_RS13610 SM00474 3'-5' exonuclease AMC99_RS13610 SM00475 5'-3' exonuclease AMC99_RS13610 SM00482 DNA polymerase A domain AMC99_RS13640 SM00883 Chaperonin 10 Kd subunit AMC99_RS13680 SM00530 Helix-turn-helix XRE-family like proteins AMC99_RS13695 SM00663 RNA polymerase I subunit A N-terminus