locus-tag class description AVL55_RS00005 PF11638 DnaA N-terminal domain AVL55_RS00005 PF00308 Bacterial dnaA protein AVL55_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix AVL55_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AVL55_RS00010 PF02767 DNA polymerase III beta subunit, central domain AVL55_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AVL55_RS00015 PF02463 RecF/RecN/SMC N terminal domain AVL55_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS00020 PF01751 Toprim domain AVL55_RS00020 PF18053 DNA gyrase B subunit insert domain AVL55_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus AVL55_RS00020 PF00204 DNA gyrase B AVL55_RS00030 PF05746 DALR anticodon binding domain AVL55_RS00030 PF02092 Glycyl-tRNA synthetase beta subunit AVL55_RS00035 PF02091 Glycyl-tRNA synthetase alpha subunit AVL55_RS00040 PF03352 Methyladenine glycosylase AVL55_RS00050 PF04220 Der GTPase activator (YihI) AVL55_RS00060 PF00034 Cytochrome c AVL55_RS00065 PF01926 50S ribosome-binding GTPase AVL55_RS00070 PF00476 DNA polymerase family A AVL55_RS00070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AVL55_RS00070 PF01367 5'-3' exonuclease, C-terminal SAM fold AVL55_RS00070 PF01612 3'-5' exonuclease AVL55_RS00080 PF02386 Cation transport protein AVL55_RS00085 PF02080 TrkA-C domain AVL55_RS00085 PF02254 TrkA-N domain AVL55_RS00090 PF01029 NusB family AVL55_RS00090 PF01189 16S rRNA methyltransferase RsmB/F AVL55_RS00095 PF02911 Formyl transferase, C-terminal domain AVL55_RS00095 PF00551 Formyl transferase AVL55_RS00100 PF01327 Polypeptide deformylase AVL55_RS00110 PF02481 DNA recombination-mediator protein A AVL55_RS00110 PF17782 DprA winged helix domain AVL55_RS00115 PF04361 Protein of unknown function (DUF494) AVL55_RS00125 PF01300 Telomere recombination AVL55_RS00130 PF01218 Coproporphyrinogen III oxidase AVL55_RS00135 PF03922 OmpW family AVL55_RS00145 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AVL55_RS00145 PF01488 Shikimate / quinate 5-dehydrogenase AVL55_RS00145 PF08501 Shikimate dehydrogenase substrate binding domain AVL55_RS00150 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_RS00200 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVL55_RS00200 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVL55_RS00200 PF02811 PHP domain AVL55_RS00200 PF14579 Helix-hairpin-helix motif AVL55_RS00200 PF01336 OB-fold nucleic acid binding domain AVL55_RS00230 PF02225 PA domain AVL55_RS00230 PF04389 Peptidase family M28 AVL55_RS00235 PF00440 Bacterial regulatory proteins, tetR family AVL55_RS00240 PF04127 DNA / pantothenate metabolism flavoprotein AVL55_RS00240 PF02441 Flavoprotein AVL55_RS00245 PF04002 RadC-like JAB domain AVL55_RS00265 PF06082 Exopolysaccharide biosynthesis protein YbjH AVL55_RS00270 PF00830 Ribosomal L28 family AVL55_RS00275 PF00471 Ribosomal protein L33 AVL55_RS00285 PF06827 Zinc finger found in FPG and IleRS AVL55_RS00285 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AVL55_RS00285 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AVL55_RS00290 PF01467 Cytidylyltransferase-like AVL55_RS00310 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS00310 PF00563 EAL domain AVL55_RS00310 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS00315 PF00155 Aminotransferase class I and II AVL55_RS00320 PF00107 Zinc-binding dehydrogenase AVL55_RS00320 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_RS00325 PF00581 Rhodanese-like domain AVL55_RS00330 PF01694 Rhomboid family AVL55_RS00330 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AVL55_RS00340 PF04345 Chorismate lyase AVL55_RS00345 PF01040 UbiA prenyltransferase family AVL55_RS00350 PF04380 Membrane fusogenic activity AVL55_RS00355 PF00580 UvrD/REP helicase N-terminal domain AVL55_RS00355 PF13361 UvrD-like helicase C-terminal domain AVL55_RS00360 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS00360 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS00360 PF00563 EAL domain AVL55_RS00365 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVL55_RS00385 PF03553 Na+/H+ antiporter family AVL55_RS00390 PF02028 BCCT, betaine/carnitine/choline family transporter AVL55_RS00435 PF00589 Phage integrase family AVL55_RS00455 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS00455 PF00593 TonB dependent receptor AVL55_RS00470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_RS00470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_RS00470 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_RS00475 PF03466 LysR substrate binding domain AVL55_RS00475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS00480 PF00753 Metallo-beta-lactamase superfamily AVL55_RS00485 PF04317 YcjX-like family, DUF463 AVL55_RS00500 PF06968 Biotin and Thiamin Synthesis associated domain AVL55_RS00500 PF04055 Radical SAM superfamily AVL55_RS00505 PF05690 Thiazole biosynthesis protein ThiG AVL55_RS00515 PF00899 ThiF family AVL55_RS00520 PF02581 Thiamine monophosphate synthase AVL55_RS00525 PF01964 Radical SAM ThiC family AVL55_RS00525 PF13667 ThiC-associated domain AVL55_RS00530 PF07219 HemY protein N-terminus AVL55_RS00530 PF07719 Tetratricopeptide repeat AVL55_RS00535 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AVL55_RS00540 PF02602 Uroporphyrinogen-III synthase HemD AVL55_RS00545 PF03900 Porphobilinogen deaminase, C-terminal domain AVL55_RS00545 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AVL55_RS00550 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS00550 PF00072 Response regulator receiver domain AVL55_RS00560 PF00625 Guanylate kinase AVL55_RS00565 PF01192 RNA polymerase Rpb6 AVL55_RS00570 PF13291 ACT domain AVL55_RS00570 PF02824 TGS domain AVL55_RS00570 PF04607 Region found in RelA / SpoT proteins AVL55_RS00575 PF01042 Endoribonuclease L-PSP AVL55_RS00580 PF00588 SpoU rRNA Methylase family AVL55_RS00580 PF12105 SpoU, rRNA methylase, C-terminal AVL55_RS00585 PF00271 Helicase conserved C-terminal domain AVL55_RS00585 PF17191 RecG wedge domain AVL55_RS00585 PF00270 DEAD/DEAH box helicase AVL55_RS00590 PF04445 Putative SAM-dependent methyltransferase AVL55_RS00595 PF08534 Redoxin AVL55_RS00610 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_RS00615 PF00005 ABC transporter AVL55_RS00615 PF08402 TOBE domain AVL55_RS00635 PF00873 AcrB/AcrD/AcrF family AVL55_RS00640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL55_RS00640 PF00529 HlyD membrane-fusion protein of T1SS AVL55_RS00660 PF13411 MerR HTH family regulatory protein AVL55_RS00675 PF03922 OmpW family AVL55_RS00690 PF03466 LysR substrate binding domain AVL55_RS00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS00695 PF01810 LysE type translocator AVL55_RS00700 PF00893 Small Multidrug Resistance protein AVL55_RS00710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL55_RS00710 PF00529 HlyD membrane-fusion protein of T1SS AVL55_RS00715 PF00873 AcrB/AcrD/AcrF family AVL55_RS00725 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AVL55_RS00725 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AVL55_RS00730 PF00850 Histone deacetylase domain AVL55_RS00735 PF00462 Glutaredoxin AVL55_RS00745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS00745 PF00672 HAMP domain AVL55_RS00745 PF12729 Four helix bundle sensory module for signal transduction AVL55_RS00755 PF11737 Protein of unknown function (DUF3300) AVL55_RS00760 PF00925 GTP cyclohydrolase II AVL55_RS00765 PF00563 EAL domain AVL55_RS00765 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS00765 PF08448 PAS fold AVL55_RS00780 PF09382 RQC domain AVL55_RS00780 PF00570 HRDC domain AVL55_RS00780 PF16124 RecQ zinc-binding AVL55_RS00780 PF00271 Helicase conserved C-terminal domain AVL55_RS00780 PF00270 DEAD/DEAH box helicase AVL55_RS00785 PF03061 Thioesterase superfamily AVL55_RS00790 PF00571 CBS domain AVL55_RS00790 PF03448 MgtE intracellular N domain AVL55_RS00790 PF01769 Divalent cation transporter AVL55_RS00795 PF00892 EamA-like transporter family AVL55_RS00800 PF08448 PAS fold AVL55_RS00800 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS00805 PF13361 UvrD-like helicase C-terminal domain AVL55_RS00805 PF00580 UvrD/REP helicase N-terminal domain AVL55_RS00810 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_RS00810 PF06426 Serine acetyltransferase, N-terminal AVL55_RS00815 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS00820 PF13419 Haloacid dehalogenase-like hydrolase AVL55_RS00825 PF00589 Phage integrase family AVL55_RS00825 PF02899 Phage integrase, N-terminal SAM-like domain AVL55_RS00835 PF01678 Diaminopimelate epimerase AVL55_RS00840 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AVL55_RS00840 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AVL55_RS00855 PF01569 PAP2 superfamily AVL55_RS00860 PF03737 Aldolase/RraA AVL55_RS00870 PF02441 Flavoprotein AVL55_RS00875 PF02875 Mur ligase family, glutamate ligase domain AVL55_RS00875 PF08245 Mur ligase middle domain AVL55_RS00875 PF01225 Mur ligase family, catalytic domain AVL55_RS00880 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AVL55_RS00885 PF00719 Inorganic pyrophosphatase AVL55_RS00915 PF00005 ABC transporter AVL55_RS00915 PF17755 UvrA DNA-binding domain AVL55_RS00915 PF17760 UvrA interaction domain AVL55_RS00920 PF07690 Major Facilitator Superfamily AVL55_RS00935 PF00356 Bacterial regulatory proteins, lacI family AVL55_RS00940 PF01263 Aldose 1-epimerase AVL55_RS00945 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AVL55_RS00945 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AVL55_RS00950 PF08544 GHMP kinases C terminal AVL55_RS00950 PF10509 Galactokinase galactose-binding signature AVL55_RS00950 PF00288 GHMP kinases N terminal domain AVL55_RS00955 PF00474 Sodium:solute symporter family AVL55_RS00960 PF00436 Single-strand binding protein family AVL55_RS01005 PF03150 Di-haem cytochrome c peroxidase AVL55_RS01005 PF00034 Cytochrome c AVL55_RS01025 PF00703 Glycosyl hydrolases family 2 AVL55_RS01025 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AVL55_RS01025 PF02837 Glycosyl hydrolases family 2, sugar binding domain AVL55_RS01025 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AVL55_RS01025 PF16355 Domain of unknown function (DUF4982) AVL55_RS01035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AVL55_RS01035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AVL55_RS01040 PF00455 DeoR C terminal sensor domain AVL55_RS01040 PF08220 DeoR-like helix-turn-helix domain AVL55_RS01045 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AVL55_RS01045 PF01266 FAD dependent oxidoreductase AVL55_RS01070 PF04085 rod shape-determining protein MreC AVL55_RS01075 PF04093 rod shape-determining protein MreD AVL55_RS01080 PF02545 Maf-like protein AVL55_RS01085 PF10150 Ribonuclease E/G family AVL55_RS01085 PF00575 S1 RNA binding domain AVL55_RS01095 PF00795 Carbon-nitrogen hydrolase AVL55_RS01100 PF01523 Putative modulator of DNA gyrase AVL55_RS01110 PF04751 Protein of unknown function (DUF615) AVL55_RS01115 PF01523 Putative modulator of DNA gyrase AVL55_RS01125 PF00703 Glycosyl hydrolases family 2 AVL55_RS01125 PF16353 Domain of unknown function(DUF4981) AVL55_RS01125 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AVL55_RS01125 PF02929 Beta galactosidase small chain AVL55_RS01125 PF02837 Glycosyl hydrolases family 2, sugar binding domain AVL55_RS01130 PF00072 Response regulator receiver domain AVL55_RS01130 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS01135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS01135 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS01135 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_RS01140 PF08323 Starch synthase catalytic domain AVL55_RS01140 PF00534 Glycosyl transferases group 1 AVL55_RS01145 PF08468 Methyltransferase small domain N-terminal AVL55_RS01145 PF05175 Methyltransferase small domain AVL55_RS01150 PF02390 Putative methyltransferase AVL55_RS01160 PF14815 NUDIX domain AVL55_RS01160 PF00730 HhH-GPD superfamily base excision DNA repair protein AVL55_RS01160 PF00633 Helix-hairpin-helix motif AVL55_RS01165 PF04362 Bacterial Fe(2+) trafficking AVL55_RS01195 PF00072 Response regulator receiver domain AVL55_RS01195 PF01339 CheB methylesterase AVL55_RS01215 PF02796 Helix-turn-helix domain of resolvase AVL55_RS01215 PF00239 Resolvase, N terminal domain AVL55_RS01220 PF01526 Tn3 transposase DDE domain AVL55_RS01220 PF13700 Domain of unknown function (DUF4158) AVL55_RS01230 PF01750 Hydrogenase maturation protease AVL55_RS01240 PF09278 MerR, DNA binding AVL55_RS01240 PF00376 MerR family regulatory protein AVL55_RS01245 PF00403 Heavy-metal-associated domain AVL55_RS01300 PF00873 AcrB/AcrD/AcrF family AVL55_RS01305 PF01545 Cation efflux family AVL55_RS01305 PF16916 Dimerisation domain of Zinc Transporter AVL55_RS01315 PF01219 Prokaryotic diacylglycerol kinase AVL55_RS01320 PF00884 Sulfatase AVL55_RS01320 PF08019 Phosphoethanolamine transferase EptA/EptB AVL55_RS01325 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AVL55_RS01335 PF00535 Glycosyl transferase family 2 AVL55_RS01340 PF00072 Response regulator receiver domain AVL55_RS01340 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS01345 PF00672 HAMP domain AVL55_RS01345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS01345 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS01375 PF00551 Formyl transferase AVL55_RS01375 PF02911 Formyl transferase, C-terminal domain AVL55_RS01385 PF00376 MerR family regulatory protein AVL55_RS01385 PF09278 MerR, DNA binding AVL55_RS01390 PF00403 Heavy-metal-associated domain AVL55_RS01425 PF13520 Amino acid permease AVL55_RS01435 PF07732 Multicopper oxidase AVL55_RS01435 PF00394 Multicopper oxidase AVL55_RS01435 PF07731 Multicopper oxidase AVL55_RS01460 PF13419 Haloacid dehalogenase-like hydrolase AVL55_RS01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS01465 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS01465 PF00072 Response regulator receiver domain AVL55_RS01465 PF09308 LuxQ, periplasmic AVL55_RS01480 PF00356 Bacterial regulatory proteins, lacI family AVL55_RS01485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL55_RS01485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL55_RS01495 PF03825 Nucleoside H+ symporter AVL55_RS01505 PF00732 GMC oxidoreductase AVL55_RS01505 PF05199 GMC oxidoreductase AVL55_RS01520 PF00465 Iron-containing alcohol dehydrogenase AVL55_RS01550 PF01063 Amino-transferase class IV AVL55_RS01555 PF00300 Histidine phosphatase superfamily (branch 1) AVL55_RS01570 PF00694 Aconitase C-terminal domain AVL55_RS01570 PF00330 Aconitase family (aconitate hydratase) AVL55_RS01580 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AVL55_RS01580 PF00437 Type II/IV secretion system protein AVL55_RS01585 PF00338 Ribosomal protein S10p/S20e AVL55_RS01590 PF00297 Ribosomal protein L3 AVL55_RS01595 PF00573 Ribosomal protein L4/L1 family AVL55_RS01600 PF00276 Ribosomal protein L23 AVL55_RS01605 PF00181 Ribosomal Proteins L2, RNA binding domain AVL55_RS01605 PF03947 Ribosomal Proteins L2, C-terminal domain AVL55_RS01610 PF00203 Ribosomal protein S19 AVL55_RS01615 PF00237 Ribosomal protein L22p/L17e AVL55_RS01620 PF00189 Ribosomal protein S3, C-terminal domain AVL55_RS01620 PF07650 KH domain AVL55_RS01625 PF00252 Ribosomal protein L16p/L10e AVL55_RS01630 PF00831 Ribosomal L29 protein AVL55_RS01635 PF00366 Ribosomal protein S17 AVL55_RS01645 PF00534 Glycosyl transferases group 1 AVL55_RS01645 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AVL55_RS01665 PF02743 Cache domain AVL55_RS01665 PF00672 HAMP domain AVL55_RS01665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS01670 PF01432 Peptidase family M3 AVL55_RS01690 PF00551 Formyl transferase AVL55_RS01690 PF01842 ACT domain AVL55_RS01700 PF00270 DEAD/DEAH box helicase AVL55_RS01700 PF00271 Helicase conserved C-terminal domain AVL55_RS01700 PF08482 ATP-dependent helicase C-terminal AVL55_RS01700 PF04408 Helicase associated domain (HA2) AVL55_RS01710 PF13406 Transglycosylase SLT domain AVL55_RS01715 PF14814 Bifunctional transglycosylase second domain AVL55_RS01715 PF00905 Penicillin binding protein transpeptidase domain AVL55_RS01715 PF00912 Transglycosylase AVL55_RS01725 PF05661 Protein of unknown function (DUF808) AVL55_RS01730 PF12833 Helix-turn-helix domain AVL55_RS01740 PF00543 Nitrogen regulatory protein P-II AVL55_RS01745 PF00909 Ammonium Transporter Family AVL55_RS01755 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS01755 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS01755 PF00563 EAL domain AVL55_RS01765 PF00199 Catalase AVL55_RS01765 PF06628 Catalase-related immune-responsive AVL55_RS01775 PF00248 Aldo/keto reductase family AVL55_RS01780 PF02690 Na+/Pi-cotransporter AVL55_RS01790 PF04261 Dyp-type peroxidase family AVL55_RS01795 PF00202 Aminotransferase class-III AVL55_RS01800 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVL55_RS01800 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVL55_RS01825 PF01627 Hpt domain AVL55_RS01825 PF00672 HAMP domain AVL55_RS01825 PF00072 Response regulator receiver domain AVL55_RS01825 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL55_RS01825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS01825 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS01830 PF00521 DNA gyrase/topoisomerase IV, subunit A AVL55_RS01830 PF03989 DNA gyrase C-terminal domain, beta-propeller AVL55_RS01840 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS01840 PF00563 EAL domain AVL55_RS01840 PF13188 PAS domain AVL55_RS01840 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS01850 PF00171 Aldehyde dehydrogenase family AVL55_RS01855 PF04958 Arginine N-succinyltransferase beta subunit AVL55_RS01860 PF00202 Aminotransferase class-III AVL55_RS01870 PF00117 Glutamine amidotransferase class-I AVL55_RS01875 PF00579 tRNA synthetases class I (W and Y) AVL55_RS01880 PF00834 Ribulose-phosphate 3 epimerase family AVL55_RS01900 PF02086 D12 class N6 adenine-specific DNA methyltransferase AVL55_RS01910 PF01761 3-dehydroquinate synthase AVL55_RS01915 PF01202 Shikimate kinase AVL55_RS01920 PF11741 AMIN domain AVL55_RS01920 PF07660 Secretin and TonB N terminus short domain AVL55_RS01920 PF03958 Bacterial type II/III secretion system short domain AVL55_RS01920 PF00263 Bacterial type II and III secretion system protein AVL55_RS01930 PF04350 Pilus assembly protein, PilO AVL55_RS01935 PF05137 Fimbrial assembly protein (PilN) AVL55_RS01940 PF11104 Type IV pilus assembly protein PilM; AVL55_RS01945 PF00905 Penicillin binding protein transpeptidase domain AVL55_RS01945 PF00912 Transglycosylase AVL55_RS01945 PF17092 Penicillin-binding protein OB-like domain AVL55_RS01950 PF00390 Malic enzyme, N-terminal domain AVL55_RS01950 PF03949 Malic enzyme, NAD binding domain AVL55_RS01960 PF02798 Glutathione S-transferase, N-terminal domain AVL55_RS01970 PF00199 Catalase AVL55_RS01970 PF06628 Catalase-related immune-responsive AVL55_RS01985 PF00696 Amino acid kinase family AVL55_RS01985 PF00583 Acetyltransferase (GNAT) family AVL55_RS01990 PF00206 Lyase AVL55_RS01990 PF14698 Argininosuccinate lyase C-terminal AVL55_RS01995 PF00764 Arginosuccinate synthase AVL55_RS02000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AVL55_RS02000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AVL55_RS02005 PF00696 Amino acid kinase family AVL55_RS02010 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVL55_RS02010 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVL55_RS02015 PF02142 MGS-like domain AVL55_RS02025 PF00072 Response regulator receiver domain AVL55_RS02025 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS02030 PF00672 HAMP domain AVL55_RS02030 PF16527 Two-component sensor protein CpxA, periplasmic domain AVL55_RS02030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS02030 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS02035 PF12146 Serine aminopeptidase, S33 AVL55_RS02040 PF00588 SpoU rRNA Methylase family AVL55_RS02050 PF12704 MacB-like periplasmic core domain AVL55_RS02050 PF02687 FtsX-like permease family AVL55_RS02050 PF00005 ABC transporter AVL55_RS02055 PF02321 Outer membrane efflux protein AVL55_RS02060 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AVL55_RS02060 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AVL55_RS02065 PF02556 Preprotein translocase subunit SecB AVL55_RS02070 PF00462 Glutaredoxin AVL55_RS02075 PF00581 Rhodanese-like domain AVL55_RS02080 PF01551 Peptidase family M23 AVL55_RS02085 PF04748 Divergent polysaccharide deacetylase AVL55_RS02095 PF03009 Glycerophosphoryl diester phosphodiesterase family AVL55_RS02105 PF02666 Phosphatidylserine decarboxylase AVL55_RS02110 PF03193 RsgA GTPase AVL55_RS02115 PF00929 Exonuclease AVL55_RS02135 PF00128 Alpha amylase, catalytic domain AVL55_RS02135 PF02806 Alpha amylase, C-terminal all-beta domain AVL55_RS02150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVL55_RS02150 PF00205 Thiamine pyrophosphate enzyme, central domain AVL55_RS02150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVL55_RS02155 PF10369 Small subunit of acetolactate synthase AVL55_RS02165 PF02416 mttA/Hcf106 family AVL55_RS02170 PF02416 mttA/Hcf106 family AVL55_RS02175 PF00902 Sec-independent protein translocase protein (TatC) AVL55_RS02185 PF01026 TatD related DNase AVL55_RS02190 PF01590 GAF domain AVL55_RS02190 PF00360 Phytochrome region AVL55_RS02190 PF00563 EAL domain AVL55_RS02190 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS02195 PF00490 Delta-aminolevulinic acid dehydratase AVL55_RS02200 PF02541 Ppx/GppA phosphatase family AVL55_RS02205 PF00270 DEAD/DEAH box helicase AVL55_RS02205 PF00271 Helicase conserved C-terminal domain AVL55_RS02210 PF00085 Thioredoxin AVL55_RS02215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL55_RS02215 PF07498 Rho termination factor, N-terminal domain AVL55_RS02215 PF07497 Rho termination factor, RNA-binding domain AVL55_RS02220 PF07687 Peptidase dimerisation domain AVL55_RS02220 PF01546 Peptidase family M20/M25/M40 AVL55_RS02225 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS02225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS02225 PF00072 Response regulator receiver domain AVL55_RS02225 PF09308 LuxQ, periplasmic AVL55_RS02230 PF06965 Na+/H+ antiporter 1 AVL55_RS02235 PF00731 AIR carboxylase AVL55_RS02240 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AVL55_RS02240 PF02222 ATP-grasp domain AVL55_RS02255 PF00210 Ferritin-like domain AVL55_RS02260 PF07995 Glucose / Sorbosone dehydrogenase AVL55_RS02265 PF07676 WD40-like Beta Propeller Repeat AVL55_RS02265 PF00326 Prolyl oligopeptidase family AVL55_RS02275 PF00085 Thioredoxin AVL55_RS02290 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AVL55_RS02295 PF00709 Adenylosuccinate synthetase AVL55_RS02300 PF00171 Aldehyde dehydrogenase family AVL55_RS02320 PF03553 Na+/H+ antiporter family AVL55_RS02325 PF00933 Glycosyl hydrolase family 3 N terminal domain AVL55_RS02335 PF07075 Protein of unknown function (DUF1343) AVL55_RS02340 PF01380 SIS domain AVL55_RS02345 PF01168 Alanine racemase, N-terminal domain AVL55_RS02345 PF00842 Alanine racemase, C-terminal domain AVL55_RS02360 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_RS02395 PF00464 Serine hydroxymethyltransferase AVL55_RS02400 PF03466 LysR substrate binding domain AVL55_RS02400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS02405 PF03831 PhnA domain AVL55_RS02405 PF08274 PhnA Zinc-Ribbon AVL55_RS02410 PF00583 Acetyltransferase (GNAT) family AVL55_RS02420 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AVL55_RS02440 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AVL55_RS02445 PF01381 Helix-turn-helix AVL55_RS02450 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AVL55_RS02455 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AVL55_RS02485 PF01548 Transposase AVL55_RS02485 PF02371 Transposase IS116/IS110/IS902 family AVL55_RS02515 PF00589 Phage integrase family AVL55_RS02515 PF13495 Phage integrase, N-terminal SAM-like domain AVL55_RS02520 PF02803 Thiolase, C-terminal domain AVL55_RS02520 PF00108 Thiolase, N-terminal domain AVL55_RS02525 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVL55_RS02525 PF00378 Enoyl-CoA hydratase/isomerase AVL55_RS02525 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVL55_RS02530 PF01464 Transglycosylase SLT domain AVL55_RS02530 PF14718 Soluble lytic murein transglycosylase L domain AVL55_RS02535 PF00557 Metallopeptidase family M24 AVL55_RS02545 PF00348 Polyprenyl synthetase AVL55_RS02550 PF00829 Ribosomal prokaryotic L21 protein AVL55_RS02555 PF01016 Ribosomal L27 protein AVL55_RS02560 PF01926 50S ribosome-binding GTPase AVL55_RS02560 PF01018 GTP1/OBG AVL55_RS02570 PF09055 Nickel-containing superoxide dismutase AVL55_RS02590 PF00186 Dihydrofolate reductase AVL55_RS02595 PF04545 Sigma-70, region 4 AVL55_RS02595 PF00140 Sigma-70 factor, region 1.2 AVL55_RS02595 PF04542 Sigma-70 region 2 AVL55_RS02595 PF04539 Sigma-70 region 3 AVL55_RS02600 PF01551 Peptidase family M23 AVL55_RS02600 PF01476 LysM domain AVL55_RS02605 PF09335 SNARE associated Golgi protein AVL55_RS02615 PF01142 tRNA pseudouridine synthase D (TruD) AVL55_RS02620 PF02542 YgbB family AVL55_RS02625 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AVL55_RS02630 PF04977 Septum formation initiator AVL55_RS02640 PF17200 Single Cache domain 2 AVL55_RS02640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS02640 PF00672 HAMP domain AVL55_RS02645 PF13404 AsnC-type helix-turn-helix domain AVL55_RS02645 PF01037 Lrp/AsnC ligand binding domain AVL55_RS02650 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_RS02650 PF00107 Zinc-binding dehydrogenase AVL55_RS02660 PF14850 DNA-binding domain of Proline dehydrogenase AVL55_RS02660 PF00171 Aldehyde dehydrogenase family AVL55_RS02660 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AVL55_RS02660 PF01619 Proline dehydrogenase AVL55_RS02665 PF02321 Outer membrane efflux protein AVL55_RS02675 PF00873 AcrB/AcrD/AcrF family AVL55_RS02680 PF00072 Response regulator receiver domain AVL55_RS02680 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS02685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS02685 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS02705 PF02976 DNA mismatch repair enzyme MutH AVL55_RS02710 PF00293 NUDIX domain AVL55_RS02715 PF00391 PEP-utilising enzyme, mobile domain AVL55_RS02715 PF02896 PEP-utilising enzyme, TIM barrel domain AVL55_RS02715 PF05524 PEP-utilising enzyme, N-terminal AVL55_RS02715 PF01590 GAF domain AVL55_RS02720 PF01925 Sulfite exporter TauE/SafE AVL55_RS02725 PF01790 Prolipoprotein diacylglyceryl transferase AVL55_RS02730 PF00303 Thymidylate synthase AVL55_RS02735 PF00072 Response regulator receiver domain AVL55_RS02740 PF05230 MASE2 domain AVL55_RS02740 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS02745 PF01627 Hpt domain AVL55_RS02745 PF00072 Response regulator receiver domain AVL55_RS02745 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL55_RS02745 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS02745 PF00672 HAMP domain AVL55_RS02750 PF07690 Major Facilitator Superfamily AVL55_RS02765 PF00849 RNA pseudouridylate synthase AVL55_RS02770 PF18339 RapA N-terminal Tudor like domain 1 AVL55_RS02770 PF00176 SNF2 family N-terminal domain AVL55_RS02770 PF00271 Helicase conserved C-terminal domain AVL55_RS02770 PF12137 RNA polymerase recycling family C-terminal AVL55_RS02770 PF18337 RapA N-terminal Tudor like domain AVL55_RS02780 PF13638 PIN domain AVL55_RS02780 PF02562 PhoH-like protein AVL55_RS02785 PF00392 Bacterial regulatory proteins, gntR family AVL55_RS02785 PF00155 Aminotransferase class I and II AVL55_RS02790 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AVL55_RS02790 PF12801 4Fe-4S binding domain AVL55_RS02790 PF13746 4Fe-4S dicluster domain AVL55_RS02805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVL55_RS02805 PF10414 Sirohaem synthase dimerisation region AVL55_RS02810 PF00271 Helicase conserved C-terminal domain AVL55_RS02810 PF00270 DEAD/DEAH box helicase AVL55_RS02810 PF03880 DbpA RNA binding domain AVL55_RS02825 PF02321 Outer membrane efflux protein AVL55_RS02830 PF00293 NUDIX domain AVL55_RS02840 PF00149 Calcineurin-like phosphoesterase AVL55_RS02845 PF05728 Uncharacterised protein family (UPF0227) AVL55_RS02850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS02850 PF00204 DNA gyrase B AVL55_RS02850 PF01751 Toprim domain AVL55_RS02850 PF00986 DNA gyrase B subunit, carboxyl terminus AVL55_RS02860 PF13419 Haloacid dehalogenase-like hydrolase AVL55_RS02880 PF04055 Radical SAM superfamily AVL55_RS02885 PF09285 Elongation factor P, C-terminal AVL55_RS02885 PF01132 Elongation factor P (EF-P) OB domain AVL55_RS02885 PF08207 Elongation factor P (EF-P) KOW-like domain AVL55_RS02890 PF00152 tRNA synthetases class II (D, K and N) AVL55_RS02895 PF00593 TonB dependent receptor AVL55_RS02895 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS02910 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVL55_RS02915 PF05175 Methyltransferase small domain AVL55_RS02925 PF01722 BolA-like protein AVL55_RS02930 PF01569 PAP2 superfamily AVL55_RS02940 PF08376 Nitrate and nitrite sensing AVL55_RS02940 PF03861 ANTAR domain AVL55_RS02950 PF01740 STAS domain AVL55_RS02950 PF00916 Sulfate permease family AVL55_RS02955 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AVL55_RS02955 PF18267 Rubredoxin NAD+ reductase C-terminal domain AVL55_RS02955 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS02955 PF04324 BFD-like [2Fe-2S] binding domain AVL55_RS02955 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AVL55_RS02960 PF13806 Rieske-like [2Fe-2S] domain AVL55_RS02965 PF00384 Molybdopterin oxidoreductase AVL55_RS02965 PF01568 Molydopterin dinucleotide binding domain AVL55_RS02965 PF04324 BFD-like [2Fe-2S] binding domain AVL55_RS02965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVL55_RS02970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVL55_RS02970 PF14824 Sirohaem biosynthesis protein central AVL55_RS02970 PF10414 Sirohaem synthase dimerisation region AVL55_RS02975 PF00591 Glycosyl transferase family, a/b domain AVL55_RS02975 PF02885 Glycosyl transferase family, helical bundle domain AVL55_RS02980 PF02872 5'-nucleotidase, C-terminal domain AVL55_RS02980 PF00149 Calcineurin-like phosphoesterase AVL55_RS02985 PF00563 EAL domain AVL55_RS02985 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS02985 PF01590 GAF domain AVL55_RS02985 PF00360 Phytochrome region AVL55_RS02990 PF13426 PAS domain AVL55_RS02990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS02990 PF08447 PAS fold AVL55_RS02995 PF00005 ABC transporter AVL55_RS03000 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_RS03005 PF00005 ABC transporter AVL55_RS03020 PF01323 DSBA-like thioredoxin domain AVL55_RS03025 PF00593 TonB dependent receptor AVL55_RS03025 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS03030 PF01636 Phosphotransferase enzyme family AVL55_RS03035 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AVL55_RS03035 PF13746 4Fe-4S dicluster domain AVL55_RS03035 PF12801 4Fe-4S binding domain AVL55_RS03050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_RS03050 PF12806 Acetyl-CoA dehydrogenase C-terminal like AVL55_RS03050 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_RS03050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_RS03065 PF13378 Enolase C-terminal domain-like AVL55_RS03065 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AVL55_RS03070 PF00596 Class II Aldolase and Adducin N-terminal domain AVL55_RS03080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL55_RS03085 PF00873 AcrB/AcrD/AcrF family AVL55_RS03100 PF00672 HAMP domain AVL55_RS03100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS03100 PF02743 Cache domain AVL55_RS03105 PF04546 Sigma-70, non-essential region AVL55_RS03105 PF04545 Sigma-70, region 4 AVL55_RS03105 PF04539 Sigma-70 region 3 AVL55_RS03105 PF04542 Sigma-70 region 2 AVL55_RS03105 PF00140 Sigma-70 factor, region 1.2 AVL55_RS03105 PF03979 Sigma-70 factor, region 1.1 AVL55_RS03110 PF08278 DNA primase DnaG DnaB-binding AVL55_RS03110 PF08275 DNA primase catalytic core, N-terminal domain AVL55_RS03110 PF01807 CHC2 zinc finger AVL55_RS03110 PF10410 DnaB-helicase binding domain of primase AVL55_RS03120 PF01165 Ribosomal protein S21 AVL55_RS03125 PF00814 Glycoprotease family AVL55_RS03135 PF02660 Glycerol-3-phosphate acyltransferase AVL55_RS03140 PF02152 Dihydroneopterin aldolase AVL55_RS03150 PF02673 Bacitracin resistance protein BacA AVL55_RS03155 PF01230 HIT domain AVL55_RS03170 PF03594 Benzoate membrane transport protein AVL55_RS03175 PF01381 Helix-turn-helix AVL55_RS03175 PF07883 Cupin domain AVL55_RS03180 PF04381 Putative exonuclease, RdgC AVL55_RS03185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS03185 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS03185 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_RS03190 PF00072 Response regulator receiver domain AVL55_RS03190 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS03195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS03195 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS03195 PF00989 PAS fold AVL55_RS03195 PF11808 Phosphate regulon sensor protein PhoR AVL55_RS03200 PF12849 PBP superfamily domain AVL55_RS03225 PF01618 MotA/TolQ/ExbB proton channel family AVL55_RS03230 PF01618 MotA/TolQ/ExbB proton channel family AVL55_RS03235 PF02472 Biopolymer transport protein ExbD/TolR AVL55_RS03240 PF03544 Gram-negative bacterial TonB protein C-terminal AVL55_RS03250 PF00501 AMP-binding enzyme AVL55_RS03250 PF13193 AMP-binding enzyme C-terminal domain AVL55_RS03260 PF07995 Glucose / Sorbosone dehydrogenase AVL55_RS03265 PF00330 Aconitase family (aconitate hydratase) AVL55_RS03265 PF11791 Aconitate B N-terminal domain AVL55_RS03265 PF06434 Aconitate hydratase 2 N-terminus AVL55_RS03270 PF00072 Response regulator receiver domain AVL55_RS03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS03270 PF17149 Periplasmic sensor domain found in signal transduction proteins AVL55_RS03270 PF00672 HAMP domain AVL55_RS03270 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS03270 PF01627 Hpt domain AVL55_RS03290 PF11791 Aconitate B N-terminal domain AVL55_RS03290 PF06434 Aconitate hydratase 2 N-terminus AVL55_RS03290 PF00330 Aconitase family (aconitate hydratase) AVL55_RS03300 PF01842 ACT domain AVL55_RS03300 PF00696 Amino acid kinase family AVL55_RS03310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS03310 PF00672 HAMP domain AVL55_RS03315 PF00149 Calcineurin-like phosphoesterase AVL55_RS03320 PF04379 ApaG domain AVL55_RS03325 PF00398 Ribosomal RNA adenine dimethylase AVL55_RS03330 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AVL55_RS03335 PF09312 SurA N-terminal domain AVL55_RS03335 PF00639 PPIC-type PPIASE domain AVL55_RS03340 PF04453 LPS transport system D AVL55_RS03340 PF03968 OstA-like protein AVL55_RS03350 PF05099 Tellurite resistance protein TerB AVL55_RS03350 PF00226 DnaJ domain AVL55_RS03355 PF00589 Phage integrase family AVL55_RS03355 PF02899 Phage integrase, N-terminal SAM-like domain AVL55_RS03360 PF13098 Thioredoxin-like domain AVL55_RS03360 PF10411 Disulfide bond isomerase protein N-terminus AVL55_RS03365 PF02272 DHHA1 domain AVL55_RS03365 PF17768 RecJ OB domain AVL55_RS03365 PF01368 DHH family AVL55_RS03375 PF02565 Recombination protein O C terminal AVL55_RS03375 PF11967 Recombination protein O N terminal AVL55_RS03380 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AVL55_RS03385 PF01648 4'-phosphopantetheinyl transferase superfamily AVL55_RS03390 PF05958 tRNA (Uracil-5-)-methyltransferase AVL55_RS03395 PF02824 TGS domain AVL55_RS03395 PF04607 Region found in RelA / SpoT proteins AVL55_RS03395 PF13291 ACT domain AVL55_RS03400 PF03819 MazG nucleotide pyrophosphohydrolase domain AVL55_RS03435 PF00501 AMP-binding enzyme AVL55_RS03435 PF13193 AMP-binding enzyme C-terminal domain AVL55_RS03445 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AVL55_RS03455 PF00535 Glycosyl transferase family 2 AVL55_RS03475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS03475 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS03475 PF08521 Two-component sensor kinase N-terminal AVL55_RS03480 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS03480 PF00072 Response regulator receiver domain AVL55_RS03490 PF00572 Ribosomal protein L13 AVL55_RS03495 PF00380 Ribosomal protein S9/S16 AVL55_RS03500 PF00355 Rieske [2Fe-2S] domain AVL55_RS03500 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AVL55_RS03505 PF00033 Cytochrome b/b6/petB AVL55_RS03505 PF00032 Cytochrome b(C-terminal)/b6/petD AVL55_RS03510 PF02167 Cytochrome C1 family AVL55_RS03515 PF00043 Glutathione S-transferase, C-terminal domain AVL55_RS03515 PF02798 Glutathione S-transferase, N-terminal domain AVL55_RS03520 PF04386 Stringent starvation protein B AVL55_RS03525 PF00571 CBS domain AVL55_RS03525 PF01769 Divalent cation transporter AVL55_RS03525 PF03448 MgtE intracellular N domain AVL55_RS03530 PF00381 PTS HPr component phosphorylation site AVL55_RS03535 PF03668 P-loop ATPase protein family AVL55_RS03540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AVL55_RS03545 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AVL55_RS03550 PF00309 Sigma-54 factor, Activator interacting domain (AID) AVL55_RS03550 PF04963 Sigma-54 factor, core binding domain AVL55_RS03550 PF04552 Sigma-54, DNA binding domain AVL55_RS03555 PF00005 ABC transporter AVL55_RS03555 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVL55_RS03560 PF03968 OstA-like protein AVL55_RS03575 PF01380 SIS domain AVL55_RS03575 PF00571 CBS domain AVL55_RS03580 PF01699 Sodium/calcium exchanger protein AVL55_RS03585 PF00005 ABC transporter AVL55_RS03590 PF02405 Permease MlaE AVL55_RS03595 PF02470 MlaD protein AVL55_RS03600 PF05494 MlaC protein AVL55_RS03610 PF01722 BolA-like protein AVL55_RS03615 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVL55_RS03620 PF13180 PDZ domain AVL55_RS03625 PF13180 PDZ domain AVL55_RS03625 PF00595 PDZ domain AVL55_RS03635 PF03969 AFG1-like ATPase AVL55_RS03665 PF02567 Phenazine biosynthesis-like protein AVL55_RS03675 PF00378 Enoyl-CoA hydratase/isomerase AVL55_RS03690 PF00255 Glutathione peroxidase AVL55_RS03695 PF02525 Flavodoxin-like fold AVL55_RS03705 PF01053 Cys/Met metabolism PLP-dependent enzyme AVL55_RS03720 PF00155 Aminotransferase class I and II AVL55_RS03725 PF10459 Peptidase S46 AVL55_RS03735 PF01709 Transcriptional regulator AVL55_RS03745 PF18766 SWI2/SNF2 ATPase AVL55_RS03745 PF11867 Domain of unknown function (DUF3387) AVL55_RS03745 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AVL55_RS03765 PF01420 Type I restriction modification DNA specificity domain AVL55_RS03775 PF04471 Restriction endonuclease AVL55_RS03775 PF14338 Mrr N-terminal domain AVL55_RS03810 PF01906 Putative heavy-metal-binding AVL55_RS03825 PF13007 Transposase C of IS166 homeodomain AVL55_RS03825 PF03050 Transposase IS66 family AVL55_RS03825 PF13817 IS66 C-terminal element AVL55_RS03825 PF13005 zinc-finger binding domain of transposase IS66 AVL55_RS03830 PF01609 Transposase DDE domain AVL55_RS03830 PF13808 DDE_Tnp_1-associated AVL55_RS03850 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS03850 PF00563 EAL domain AVL55_RS03850 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS03865 PF07549 SecD/SecF GG Motif AVL55_RS03865 PF02355 Protein export membrane protein AVL55_RS03870 PF03471 Transporter associated domain AVL55_RS03870 PF00999 Sodium/hydrogen exchanger family AVL55_RS03870 PF02080 TrkA-C domain AVL55_RS03880 PF00593 TonB dependent receptor AVL55_RS03880 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS03885 PF00892 EamA-like transporter family AVL55_RS03895 PF09308 LuxQ, periplasmic AVL55_RS03895 PF00072 Response regulator receiver domain AVL55_RS03895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS03895 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS03900 PF13458 Periplasmic binding protein AVL55_RS03915 PF02773 S-adenosylmethionine synthetase, C-terminal domain AVL55_RS03915 PF02772 S-adenosylmethionine synthetase, central domain AVL55_RS03915 PF00438 S-adenosylmethionine synthetase, N-terminal domain AVL55_RS03920 PF00456 Transketolase, thiamine diphosphate binding domain AVL55_RS03920 PF02780 Transketolase, C-terminal domain AVL55_RS03920 PF02779 Transketolase, pyrimidine binding domain AVL55_RS03925 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_RS03925 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVL55_RS03930 PF00162 Phosphoglycerate kinase AVL55_RS03935 PF00274 Fructose-bisphosphate aldolase class-I AVL55_RS03940 PF01219 Prokaryotic diacylglycerol kinase AVL55_RS03945 PF00884 Sulfatase AVL55_RS03945 PF08019 Phosphoethanolamine transferase EptA/EptB AVL55_RS03950 PF00072 Response regulator receiver domain AVL55_RS03950 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS03955 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS03955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS03955 PF00672 HAMP domain AVL55_RS03965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL55_RS03965 PF00529 HlyD membrane-fusion protein of T1SS AVL55_RS03970 PF00873 AcrB/AcrD/AcrF family AVL55_RS03975 PF02321 Outer membrane efflux protein AVL55_RS03985 PF00326 Prolyl oligopeptidase family AVL55_RS03985 PF07676 WD40-like Beta Propeller Repeat AVL55_RS03990 PF02541 Ppx/GppA phosphatase family AVL55_RS03995 PF02503 Polyphosphate kinase middle domain AVL55_RS03995 PF17941 Polyphosphate kinase C-terminal domain 1 AVL55_RS03995 PF13090 Polyphosphate kinase C-terminal domain 2 AVL55_RS03995 PF13089 Polyphosphate kinase N-terminal domain AVL55_RS04005 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_RS04010 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_RS04015 PF00005 ABC transporter AVL55_RS04020 PF01895 PhoU domain AVL55_RS04025 PF01384 Phosphate transporter family AVL55_RS04035 PF03466 LysR substrate binding domain AVL55_RS04035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS04045 PF03006 Haemolysin-III related AVL55_RS04055 PF01047 MarR family AVL55_RS04060 PF02566 OsmC-like protein AVL55_RS04065 PF01433 Peptidase family M1 domain AVL55_RS04075 PF01205 Uncharacterized protein family UPF0029 AVL55_RS04075 PF09186 Domain of unknown function (DUF1949) AVL55_RS04085 PF08447 PAS fold AVL55_RS04085 PF13426 PAS domain AVL55_RS04085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS04095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS04095 PF03466 LysR substrate binding domain AVL55_RS04100 PF00248 Aldo/keto reductase family AVL55_RS04110 PF02806 Alpha amylase, C-terminal all-beta domain AVL55_RS04110 PF00128 Alpha amylase, catalytic domain AVL55_RS04110 PF03714 Bacterial pullanase-associated domain AVL55_RS04115 PF12320 Type 5 capsule protein repressor C-terminal domain AVL55_RS04115 PF00149 Calcineurin-like phosphoesterase AVL55_RS04120 PF13476 AAA domain AVL55_RS04130 PF00375 Sodium:dicarboxylate symporter family AVL55_RS04135 PF00491 Arginase family AVL55_RS04140 PF01979 Amidohydrolase family AVL55_RS04145 PF07702 UTRA domain AVL55_RS04145 PF00392 Bacterial regulatory proteins, gntR family AVL55_RS04150 PF01175 Urocanase Rossmann-like domain AVL55_RS04150 PF17392 Urocanase C-terminal domain AVL55_RS04150 PF17391 Urocanase N-terminal domain AVL55_RS04155 PF00221 Aromatic amino acid lyase AVL55_RS04170 PF02371 Transposase IS116/IS110/IS902 family AVL55_RS04170 PF01548 Transposase AVL55_RS04175 PF01869 BadF/BadG/BcrA/BcrD ATPase family AVL55_RS04180 PF01979 Amidohydrolase family AVL55_RS04190 PF00005 ABC transporter AVL55_RS04190 PF12848 ABC transporter AVL55_RS04205 PF00924 Mechanosensitive ion channel AVL55_RS04220 PF00593 TonB dependent receptor AVL55_RS04220 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS04225 PF13533 Biotin-lipoyl like AVL55_RS04230 PF00005 ABC transporter AVL55_RS04240 PF07690 Major Facilitator Superfamily AVL55_RS04280 PF00665 Integrase core domain AVL55_RS04305 PF03150 Di-haem cytochrome c peroxidase AVL55_RS04330 PF04172 LrgB-like family AVL55_RS04335 PF00072 Response regulator receiver domain AVL55_RS04360 PF06969 HemN C-terminal domain AVL55_RS04360 PF04055 Radical SAM superfamily AVL55_RS04365 PF01725 Ham1 family AVL55_RS04370 PF00271 Helicase conserved C-terminal domain AVL55_RS04370 PF00270 DEAD/DEAH box helicase AVL55_RS04385 PF01743 Poly A polymerase head domain AVL55_RS04385 PF12627 Probable RNA and SrmB- binding site of polymerase A AVL55_RS04390 PF01471 Putative peptidoglycan binding domain AVL55_RS04390 PF13401 AAA domain AVL55_RS04400 PF11871 Domain of unknown function (DUF3391) AVL55_RS04400 PF01966 HD domain AVL55_RS04405 PF00694 Aconitase C-terminal domain AVL55_RS04410 PF00330 Aconitase family (aconitate hydratase) AVL55_RS04415 PF00180 Isocitrate/isopropylmalate dehydrogenase AVL55_RS04420 PF00682 HMGL-like AVL55_RS04420 PF08502 LeuA allosteric (dimerisation) domain AVL55_RS04430 PF03952 Enolase, N-terminal domain AVL55_RS04430 PF00113 Enolase, C-terminal TIM barrel domain AVL55_RS04435 PF06418 CTP synthase N-terminus AVL55_RS04435 PF00117 Glutamine amidotransferase class-I AVL55_RS04440 PF01624 MutS domain I AVL55_RS04440 PF05188 MutS domain II AVL55_RS04440 PF05192 MutS domain III AVL55_RS04440 PF05190 MutS family domain IV AVL55_RS04440 PF00488 MutS domain V AVL55_RS04445 PF02464 Competence-damaged protein AVL55_RS04450 PF00154 recA bacterial DNA recombination protein AVL55_RS04455 PF00005 ABC transporter AVL55_RS04460 PF12679 ABC-2 family transporter protein AVL55_RS04475 PF00005 ABC transporter AVL55_RS04480 PF03379 CcmB protein AVL55_RS04485 PF01578 Cytochrome C assembly protein AVL55_RS04490 PF04995 Heme exporter protein D (CcmD) AVL55_RS04495 PF03100 CcmE AVL55_RS04500 PF01578 Cytochrome C assembly protein AVL55_RS04500 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AVL55_RS04505 PF08534 Redoxin AVL55_RS04510 PF03918 Cytochrome C biogenesis protein AVL55_RS04520 PF04333 MlaA lipoprotein AVL55_RS04535 PF16363 GDP-mannose 4,6 dehydratase AVL55_RS04545 PF00854 POT family AVL55_RS04555 PF00005 ABC transporter AVL55_RS04560 PF01061 ABC-2 type transporter AVL55_RS04565 PF02563 Polysaccharide biosynthesis/export protein AVL55_RS04565 PF10531 SLBB domain AVL55_RS04575 PF00953 Glycosyl transferase family 4 AVL55_RS04580 PF00535 Glycosyl transferase family 2 AVL55_RS04590 PF00483 Nucleotidyl transferase AVL55_RS04595 PF10531 SLBB domain AVL55_RS04600 PF18324 Hypothetical protein TT1725 AVL55_RS04600 PF00180 Isocitrate/isopropylmalate dehydrogenase AVL55_RS04615 PF03641 Possible lysine decarboxylase AVL55_RS04615 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AVL55_RS04615 PF11892 Domain of unknown function (DUF3412) AVL55_RS04620 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS04625 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AVL55_RS04625 PF14489 QueF-like protein AVL55_RS04630 PF07348 Syd protein (SUKH-2) AVL55_RS04660 PF04287 tRNA pseudouridine synthase C AVL55_RS04665 PF00849 RNA pseudouridylate synthase AVL55_RS04670 PF00258 Flavodoxin AVL55_RS04675 PF14602 Hexapeptide repeat of succinyl-transferase AVL55_RS04675 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AVL55_RS04675 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_RS04680 PF01966 HD domain AVL55_RS04680 PF01909 Nucleotidyltransferase domain AVL55_RS04680 PF08335 GlnD PII-uridylyltransferase AVL55_RS04685 PF00557 Metallopeptidase family M24 AVL55_RS04690 PF00318 Ribosomal protein S2 AVL55_RS04695 PF00889 Elongation factor TS AVL55_RS04700 PF00696 Amino acid kinase family AVL55_RS04705 PF01765 Ribosome recycling factor AVL55_RS04710 PF01255 Putative undecaprenyl diphosphate synthase AVL55_RS04720 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AVL55_RS04720 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AVL55_RS04720 PF13288 DXP reductoisomerase C-terminal domain AVL55_RS04725 PF17820 PDZ domain AVL55_RS04725 PF02163 Peptidase family M50 AVL55_RS04730 PF07244 Surface antigen variable number repeat AVL55_RS04730 PF01103 Surface antigen AVL55_RS04735 PF03938 Outer membrane protein (OmpH-like) AVL55_RS04740 PF07977 FabA-like domain AVL55_RS04745 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AVL55_RS04745 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_RS04750 PF02684 Lipid-A-disaccharide synthetase AVL55_RS04755 PF01351 Ribonuclease HII AVL55_RS04760 PF02811 PHP domain AVL55_RS04760 PF14579 Helix-hairpin-helix motif AVL55_RS04760 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVL55_RS04760 PF01336 OB-fold nucleic acid binding domain AVL55_RS04760 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVL55_RS04765 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AVL55_RS04770 PF11734 TilS substrate C-terminal domain AVL55_RS04770 PF01171 PP-loop family AVL55_RS04770 PF09179 TilS substrate binding domain AVL55_RS04775 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS04775 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS04775 PF00563 EAL domain AVL55_RS04780 PF00999 Sodium/hydrogen exchanger family AVL55_RS04780 PF02080 TrkA-C domain AVL55_RS04780 PF02254 TrkA-N domain AVL55_RS04790 PF14437 MafB19-like deaminase AVL55_RS04795 PF01464 Transglycosylase SLT domain AVL55_RS04795 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_RS04800 PF02769 AIR synthase related protein, C-terminal domain AVL55_RS04800 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AVL55_RS04800 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AVL55_RS04805 PF01713 Smr domain AVL55_RS04840 PF00072 Response regulator receiver domain AVL55_RS04840 PF01584 CheW-like domain AVL55_RS04845 PF01739 CheR methyltransferase, SAM binding domain AVL55_RS04845 PF03705 CheR methyltransferase, all-alpha domain AVL55_RS04850 PF00460 Flagella basal body rod protein AVL55_RS04855 PF00460 Flagella basal body rod protein AVL55_RS04855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL55_RS04860 PF03963 Flagellar hook capping protein - N-terminal region AVL55_RS04860 PF13860 FlgD Ig-like domain AVL55_RS04860 PF13861 FlgD Tudor-like domain AVL55_RS04865 PF07559 Flagellar basal body protein FlaE AVL55_RS04865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL55_RS04865 PF00460 Flagella basal body rod protein AVL55_RS04870 PF00460 Flagella basal body rod protein AVL55_RS04870 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL55_RS04875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AVL55_RS04875 PF00460 Flagella basal body rod protein AVL55_RS04880 PF02107 Flagellar L-ring protein AVL55_RS04885 PF02119 Flagellar P-ring protein AVL55_RS04890 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AVL55_RS04890 PF10135 Rod binding protein AVL55_RS04910 PF00669 Bacterial flagellin N-terminal helical region AVL55_RS04910 PF00700 Bacterial flagellin C-terminal helical region AVL55_RS04910 PF07196 Flagellin hook IN motif AVL55_RS04915 PF00669 Bacterial flagellin N-terminal helical region AVL55_RS04915 PF07196 Flagellin hook IN motif AVL55_RS04915 PF00700 Bacterial flagellin C-terminal helical region AVL55_RS04920 PF07196 Flagellin hook IN motif AVL55_RS04920 PF00669 Bacterial flagellin N-terminal helical region AVL55_RS04920 PF00700 Bacterial flagellin C-terminal helical region AVL55_RS04925 PF03646 FlaG protein AVL55_RS04930 PF07195 Flagellar hook-associated protein 2 C-terminus AVL55_RS04930 PF02465 Flagellar hook-associated protein 2 N-terminus AVL55_RS04930 PF07196 Flagellin hook IN motif AVL55_RS04935 PF02561 Flagellar protein FliS AVL55_RS04945 PF02719 Polysaccharide biosynthesis protein AVL55_RS04950 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVL55_RS04955 PF02348 Cytidylyltransferase AVL55_RS04960 PF03102 NeuB family AVL55_RS04960 PF08666 SAF domain AVL55_RS04985 PF00501 AMP-binding enzyme AVL55_RS04985 PF13193 AMP-binding enzyme C-terminal domain AVL55_RS05010 PF04991 LicD family AVL55_RS05020 PF01501 Glycosyl transferase family 8 AVL55_RS05020 PF00535 Glycosyl transferase family 2 AVL55_RS05030 PF02350 UDP-N-acetylglucosamine 2-epimerase AVL55_RS05035 PF01370 NAD dependent epimerase/dehydratase family AVL55_RS05040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVL55_RS05045 PF13537 Glutamine amidotransferase domain AVL55_RS05045 PF00733 Asparagine synthase AVL55_RS05055 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVL55_RS05070 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AVL55_RS05070 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AVL55_RS05070 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AVL55_RS05075 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL55_RS05075 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL55_RS05080 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_RS05085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AVL55_RS05090 PF01467 Cytidylyltransferase-like AVL55_RS05095 PF00700 Bacterial flagellin C-terminal helical region AVL55_RS05095 PF00669 Bacterial flagellin N-terminal helical region AVL55_RS05100 PF00158 Sigma-54 interaction domain AVL55_RS05100 PF06490 Flagellar regulatory protein FleQ AVL55_RS05100 PF02954 Bacterial regulatory protein, Fis family AVL55_RS05105 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS05105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS05105 PF13188 PAS domain AVL55_RS05110 PF00072 Response regulator receiver domain AVL55_RS05110 PF00158 Sigma-54 interaction domain AVL55_RS05110 PF02954 Bacterial regulatory protein, Fis family AVL55_RS05115 PF02049 Flagellar hook-basal body complex protein FliE AVL55_RS05120 PF01514 Secretory protein of YscJ/FliF family AVL55_RS05120 PF08345 Flagellar M-ring protein C-terminal AVL55_RS05125 PF01706 FliG C-terminal domain AVL55_RS05125 PF14842 FliG N-terminal domain AVL55_RS05125 PF14841 FliG middle domain AVL55_RS05135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL55_RS05135 PF18269 T3SS EscN ATPase C-terminal domain AVL55_RS05155 PF02154 Flagellar motor switch protein FliM AVL55_RS05155 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AVL55_RS05160 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AVL55_RS05165 PF04347 Flagellar biosynthesis protein, FliO AVL55_RS05170 PF00813 FliP family AVL55_RS05175 PF01313 Bacterial export proteins, family 3 AVL55_RS05180 PF01311 Bacterial export proteins, family 1 AVL55_RS05185 PF01312 FlhB HrpN YscU SpaS Family AVL55_RS05190 PF00771 FHIPEP family AVL55_RS05195 PF00448 SRP54-type protein, GTPase domain AVL55_RS05200 PF10609 NUBPL iron-transfer P-loop NTPase AVL55_RS05205 PF04539 Sigma-70 region 3 AVL55_RS05205 PF04545 Sigma-70, region 4 AVL55_RS05205 PF04542 Sigma-70 region 2 AVL55_RS05210 PF00072 Response regulator receiver domain AVL55_RS05215 PF04344 Chemotaxis phosphatase, CheZ AVL55_RS05220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS05220 PF02895 Signal transducing histidine kinase, homodimeric domain AVL55_RS05220 PF00072 Response regulator receiver domain AVL55_RS05220 PF01584 CheW-like domain AVL55_RS05220 PF01627 Hpt domain AVL55_RS05225 PF01339 CheB methylesterase AVL55_RS05225 PF00072 Response regulator receiver domain AVL55_RS05230 PF13614 AAA domain AVL55_RS05240 PF01584 CheW-like domain AVL55_RS05250 PF04204 Homoserine O-succinyltransferase AVL55_RS05255 PF00809 Pterin binding enzyme AVL55_RS05255 PF02965 Vitamin B12 dependent methionine synthase, activation domain AVL55_RS05255 PF02310 B12 binding domain AVL55_RS05255 PF02607 B12 binding domain AVL55_RS05255 PF02574 Homocysteine S-methyltransferase AVL55_RS05260 PF00809 Pterin binding enzyme AVL55_RS05260 PF02965 Vitamin B12 dependent methionine synthase, activation domain AVL55_RS05260 PF02607 B12 binding domain AVL55_RS05260 PF02310 B12 binding domain AVL55_RS05260 PF02574 Homocysteine S-methyltransferase AVL55_RS05270 PF06865 Pyrimidine/purine nucleoside phosphorylase AVL55_RS05275 PF00672 HAMP domain AVL55_RS05275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS05275 PF02743 Cache domain AVL55_RS05280 PF03466 LysR substrate binding domain AVL55_RS05280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS05285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS05285 PF03466 LysR substrate binding domain AVL55_RS05290 PF00484 Carbonic anhydrase AVL55_RS05295 PF00916 Sulfate permease family AVL55_RS05295 PF01740 STAS domain AVL55_RS05305 PF00440 Bacterial regulatory proteins, tetR family AVL55_RS05305 PF13977 BetI-type transcriptional repressor, C-terminal AVL55_RS05310 PF01431 Peptidase family M13 AVL55_RS05310 PF05649 Peptidase family M13 AVL55_RS05320 PF02631 RecX family AVL55_RS05325 PF01411 tRNA synthetases class II (A) AVL55_RS05325 PF02272 DHHA1 domain AVL55_RS05325 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AVL55_RS05330 PF02599 Global regulator protein family AVL55_RS05360 PF00364 Biotin-requiring enzyme AVL55_RS05360 PF02436 Conserved carboxylase domain AVL55_RS05360 PF00682 HMGL-like AVL55_RS05365 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AVL55_RS05370 PF00005 ABC transporter AVL55_RS05375 PF00005 ABC transporter AVL55_RS05375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVL55_RS05380 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_RS05380 PF12911 N-terminal TM domain of oligopeptide transport permease C AVL55_RS05385 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_RS05390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVL55_RS05395 PF00158 Sigma-54 interaction domain AVL55_RS05395 PF02954 Bacterial regulatory protein, Fis family AVL55_RS05400 PF04012 PspA/IM30 family AVL55_RS05415 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AVL55_RS05420 PF00158 Sigma-54 interaction domain AVL55_RS05420 PF18024 Helix-turn-helix domain AVL55_RS05430 PF02798 Glutathione S-transferase, N-terminal domain AVL55_RS05430 PF14497 Glutathione S-transferase, C-terminal domain AVL55_RS05435 PF01037 Lrp/AsnC ligand binding domain AVL55_RS05440 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVL55_RS05440 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AVL55_RS05455 PF03301 Tryptophan 2,3-dioxygenase AVL55_RS05460 PF00593 TonB dependent receptor AVL55_RS05460 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS05475 PF01618 MotA/TolQ/ExbB proton channel family AVL55_RS05480 PF01618 MotA/TolQ/ExbB proton channel family AVL55_RS05485 PF02472 Biopolymer transport protein ExbD/TolR AVL55_RS05490 PF03544 Gram-negative bacterial TonB protein C-terminal AVL55_RS05500 PF08351 Domain of unknown function (DUF1726) AVL55_RS05500 PF13718 GNAT acetyltransferase 2 AVL55_RS05500 PF17176 tRNA-binding domain AVL55_RS05500 PF05127 Helicase AVL55_RS05525 PF01636 Phosphotransferase enzyme family AVL55_RS05540 PF00583 Acetyltransferase (GNAT) family AVL55_RS05550 PF03466 LysR substrate binding domain AVL55_RS05550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS05555 PF07690 Major Facilitator Superfamily AVL55_RS05560 PF00296 Luciferase-like monooxygenase AVL55_RS05565 PF00248 Aldo/keto reductase family AVL55_RS05575 PF13533 Biotin-lipoyl like AVL55_RS05580 PF01047 MarR family AVL55_RS05605 PF01381 Helix-turn-helix AVL55_RS05610 PF13657 HipA N-terminal domain AVL55_RS05610 PF07804 HipA-like C-terminal domain AVL55_RS05640 PF01699 Sodium/calcium exchanger protein AVL55_RS05645 PF05552 Conserved TM helix AVL55_RS05645 PF00924 Mechanosensitive ion channel AVL55_RS05650 PF00817 impB/mucB/samB family AVL55_RS05650 PF13438 Domain of unknown function (DUF4113) AVL55_RS05650 PF11799 impB/mucB/samB family C-terminal domain AVL55_RS05660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS05660 PF00403 Heavy-metal-associated domain AVL55_RS05660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL55_RS05665 PF03203 MerC mercury resistance protein AVL55_RS05670 PF00403 Heavy-metal-associated domain AVL55_RS05675 PF02411 MerT mercuric transport protein AVL55_RS05680 PF13411 MerR HTH family regulatory protein AVL55_RS05685 PF00239 Resolvase, N terminal domain AVL55_RS05685 PF02796 Helix-turn-helix domain of resolvase AVL55_RS05710 PF13438 Domain of unknown function (DUF4113) AVL55_RS05710 PF11799 impB/mucB/samB family C-terminal domain AVL55_RS05710 PF00817 impB/mucB/samB family AVL55_RS05715 PF00717 Peptidase S24-like AVL55_RS05720 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVL55_RS05720 PF00929 Exonuclease AVL55_RS05720 PF02811 PHP domain AVL55_RS05720 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVL55_RS05720 PF14579 Helix-hairpin-helix motif AVL55_RS05720 PF11490 DNA polymerase III polC-type N-terminus II AVL55_RS05735 PF02384 N-6 DNA Methylase AVL55_RS05740 PF01420 Type I restriction modification DNA specificity domain AVL55_RS05820 PF02690 Na+/Pi-cotransporter AVL55_RS05865 PF00403 Heavy-metal-associated domain AVL55_RS05870 PF09278 MerR, DNA binding AVL55_RS05870 PF00376 MerR family regulatory protein AVL55_RS05885 PF09278 MerR, DNA binding AVL55_RS05885 PF00376 MerR family regulatory protein AVL55_RS05890 PF01022 Bacterial regulatory protein, arsR family AVL55_RS05900 PF01545 Cation efflux family AVL55_RS05910 PF00403 Heavy-metal-associated domain AVL55_RS05920 PF00873 AcrB/AcrD/AcrF family AVL55_RS05925 PF02321 Outer membrane efflux protein AVL55_RS05930 PF00873 AcrB/AcrD/AcrF family AVL55_RS05935 PF00873 AcrB/AcrD/AcrF family AVL55_RS05950 PF10411 Disulfide bond isomerase protein N-terminus AVL55_RS05950 PF13098 Thioredoxin-like domain AVL55_RS05965 PF10502 Signal peptidase, peptidase S26 AVL55_RS05975 PF06834 TraU protein AVL55_RS05980 PF06986 Type-1V conjugative transfer system mating pair stabilisation AVL55_RS05985 PF13361 UvrD-like helicase C-terminal domain AVL55_RS05985 PF00580 UvrD/REP helicase N-terminal domain AVL55_RS05995 PF00082 Subtilase family AVL55_RS06000 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_RS06020 PF00436 Single-strand binding protein family AVL55_RS06035 PF07728 AAA domain (dynein-related subfamily) AVL55_RS06035 PF08406 CbbQ/NirQ/NorQ C-terminal AVL55_RS06055 PF00092 von Willebrand factor type A domain AVL55_RS06060 PF04002 RadC-like JAB domain AVL55_RS06080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS06080 PF03466 LysR substrate binding domain AVL55_RS06095 PF06122 Conjugative relaxosome accessory transposon protein AVL55_RS06140 PF01381 Helix-turn-helix AVL55_RS06140 PF00717 Peptidase S24-like AVL55_RS06145 PF00009 Elongation factor Tu GTP binding domain AVL55_RS06145 PF03144 Elongation factor Tu domain 2 AVL55_RS06145 PF16658 Class II release factor RF3, C-terminal domain AVL55_RS06150 PF05746 DALR anticodon binding domain AVL55_RS06150 PF00750 tRNA synthetases class I (R) AVL55_RS06150 PF03485 Arginyl tRNA synthetase N terminal domain AVL55_RS06160 PF13181 Tetratricopeptide repeat AVL55_RS06175 PF00072 Response regulator receiver domain AVL55_RS06175 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS06180 PF00563 EAL domain AVL55_RS06180 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS06180 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS06190 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_RS06200 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS06205 PF04224 Protein of unknown function, DUF417 AVL55_RS06225 PF00487 Fatty acid desaturase AVL55_RS06230 PF00970 Oxidoreductase FAD-binding domain AVL55_RS06230 PF00175 Oxidoreductase NAD-binding domain AVL55_RS06230 PF00042 Globin AVL55_RS06235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_RS06245 PF03462 PCRF domain AVL55_RS06245 PF00472 RF-1 domain AVL55_RS06250 PF00152 tRNA synthetases class II (D, K and N) AVL55_RS06250 PF01336 OB-fold nucleic acid binding domain AVL55_RS06255 PF08546 Ketopantoate reductase PanE/ApbA C terminal AVL55_RS06255 PF02558 Ketopantoate reductase PanE/ApbA AVL55_RS06260 PF00849 RNA pseudouridylate synthase AVL55_RS06270 PF05193 Peptidase M16 inactive domain AVL55_RS06270 PF00675 Insulinase (Peptidase family M16) AVL55_RS06275 PF04262 Glutamate-cysteine ligase AVL55_RS06295 PF01713 Smr domain AVL55_RS06300 PF05175 Methyltransferase small domain AVL55_RS06305 PF01264 Chorismate synthase AVL55_RS06315 PF04293 SpoVR like protein AVL55_RS06320 PF04285 Protein of unknown function (DUF444) AVL55_RS06325 PF06798 PrkA serine protein kinase C-terminal domain AVL55_RS06325 PF08298 PrkA AAA domain AVL55_RS06330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AVL55_RS06330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AVL55_RS06335 PF00462 Glutaredoxin AVL55_RS06340 PF00593 TonB dependent receptor AVL55_RS06340 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS06360 PF04324 BFD-like [2Fe-2S] binding domain AVL55_RS06365 PF10417 C-terminal domain of 1-Cys peroxiredoxin AVL55_RS06365 PF00578 AhpC/TSA family AVL55_RS06370 PF00929 Exonuclease AVL55_RS06375 PF00691 OmpA family AVL55_RS06375 PF18393 MotY N-terminal domain AVL55_RS06380 PF03009 Glycerophosphoryl diester phosphodiesterase family AVL55_RS06385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_RS06390 PF00313 'Cold-shock' DNA-binding domain AVL55_RS06400 PF02225 PA domain AVL55_RS06400 PF04389 Peptidase family M28 AVL55_RS06405 PF00633 Helix-hairpin-helix motif AVL55_RS06405 PF10576 Iron-sulfur binding domain of endonuclease III AVL55_RS06405 PF00730 HhH-GPD superfamily base excision DNA repair protein AVL55_RS06410 PF02508 Rnf-Nqr subunit, membrane protein AVL55_RS06415 PF04205 FMN-binding domain AVL55_RS06420 PF03116 NQR2, RnfD, RnfE family AVL55_RS06425 PF12838 4Fe-4S dicluster domain AVL55_RS06425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AVL55_RS06425 PF13375 RnfC Barrel sandwich hybrid domain AVL55_RS06425 PF10531 SLBB domain AVL55_RS06430 PF04060 Putative Fe-S cluster AVL55_RS06435 PF02508 Rnf-Nqr subunit, membrane protein AVL55_RS06450 PF01554 MatE AVL55_RS06455 PF00271 Helicase conserved C-terminal domain AVL55_RS06455 PF04851 Type III restriction enzyme, res subunit AVL55_RS06455 PF17757 UvrB interaction domain AVL55_RS06455 PF12344 Ultra-violet resistance protein B AVL55_RS06455 PF02151 UvrB/uvrC motif AVL55_RS06465 PF06508 Queuosine biosynthesis protein QueC AVL55_RS06470 PF04055 Radical SAM superfamily AVL55_RS06480 PF00733 Asparagine synthase AVL55_RS06480 PF13537 Glutamine amidotransferase domain AVL55_RS06500 PF02080 TrkA-C domain AVL55_RS06500 PF03600 Citrate transporter AVL55_RS06505 PF00009 Elongation factor Tu GTP binding domain AVL55_RS06510 PF00459 Inositol monophosphatase family AVL55_RS06520 PF01507 Phosphoadenosine phosphosulfate reductase family AVL55_RS06525 PF00474 Sodium:solute symporter family AVL55_RS06540 PF08281 Sigma-70, region 4 AVL55_RS06540 PF04542 Sigma-70 region 2 AVL55_RS06555 PF00092 von Willebrand factor type A domain AVL55_RS06555 PF07584 Aerotolerance regulator N-terminal AVL55_RS06560 PF00092 von Willebrand factor type A domain AVL55_RS06570 PF01882 Protein of unknown function DUF58 AVL55_RS06575 PF17863 AAA lid domain AVL55_RS06575 PF07726 ATPase family associated with various cellular activities (AAA) AVL55_RS06580 PF00108 Thiolase, N-terminal domain AVL55_RS06580 PF02803 Thiolase, C-terminal domain AVL55_RS06585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVL55_RS06585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVL55_RS06585 PF00378 Enoyl-CoA hydratase/isomerase AVL55_RS06600 PF00563 EAL domain AVL55_RS06600 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS06600 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS06605 PF00675 Insulinase (Peptidase family M16) AVL55_RS06605 PF05193 Peptidase M16 inactive domain AVL55_RS06610 PF00300 Histidine phosphatase superfamily (branch 1) AVL55_RS06620 PF01595 Cyclin M transmembrane N-terminal domain AVL55_RS06620 PF00571 CBS domain AVL55_RS06620 PF03471 Transporter associated domain AVL55_RS06625 PF01578 Cytochrome C assembly protein AVL55_RS06630 PF00448 SRP54-type protein, GTPase domain AVL55_RS06630 PF02978 Signal peptide binding domain AVL55_RS06630 PF02881 SRP54-type protein, helical bundle domain AVL55_RS06665 PF00873 AcrB/AcrD/AcrF family AVL55_RS06670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL55_RS06675 PF00664 ABC transporter transmembrane region AVL55_RS06675 PF00005 ABC transporter AVL55_RS06690 PF00886 Ribosomal protein S16 AVL55_RS06695 PF05239 PRC-barrel domain AVL55_RS06695 PF01782 RimM N-terminal domain AVL55_RS06700 PF01746 tRNA (Guanine-1)-methyltransferase AVL55_RS06705 PF01245 Ribosomal protein L19 AVL55_RS06710 PF03458 UPF0126 domain AVL55_RS06715 PF00378 Enoyl-CoA hydratase/isomerase AVL55_RS06720 PF00793 DAHP synthetase I family AVL55_RS06725 PF02153 Prephenate dehydrogenase AVL55_RS06725 PF01817 Chorismate mutase type II AVL55_RS06730 PF00800 Prephenate dehydratase AVL55_RS06730 PF01817 Chorismate mutase type II AVL55_RS06735 PF00072 Response regulator receiver domain AVL55_RS06740 PF01253 Translation initiation factor SUI1 AVL55_RS06750 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS06750 PF00072 Response regulator receiver domain AVL55_RS06760 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS06760 PF00563 EAL domain AVL55_RS06760 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS06770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS06770 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS06780 PF00158 Sigma-54 interaction domain AVL55_RS06780 PF00072 Response regulator receiver domain AVL55_RS06795 PF02938 GAD domain AVL55_RS06795 PF00152 tRNA synthetases class II (D, K and N) AVL55_RS06795 PF01336 OB-fold nucleic acid binding domain AVL55_RS06800 PF00293 NUDIX domain AVL55_RS06805 PF02075 Crossover junction endodeoxyribonuclease RuvC AVL55_RS06810 PF01330 RuvA N terminal domain AVL55_RS06810 PF07499 RuvA, C-terminal domain AVL55_RS06815 PF17864 RuvB AAA lid domain AVL55_RS06815 PF05491 RuvB C-terminal winged helix domain AVL55_RS06815 PF05496 Holliday junction DNA helicase RuvB P-loop domain AVL55_RS06820 PF03061 Thioesterase superfamily AVL55_RS06825 PF01618 MotA/TolQ/ExbB proton channel family AVL55_RS06830 PF02472 Biopolymer transport protein ExbD/TolR AVL55_RS06840 PF07676 WD40-like Beta Propeller Repeat AVL55_RS06840 PF04052 TolB amino-terminal domain AVL55_RS06845 PF00691 OmpA family AVL55_RS06850 PF13174 Tetratricopeptide repeat AVL55_RS06850 PF16331 TolA binding protein trimerisation AVL55_RS06865 PF02445 Quinolinate synthetase A protein AVL55_RS06880 PF01734 Patatin-like phospholipase AVL55_RS06885 PF08546 Ketopantoate reductase PanE/ApbA C terminal AVL55_RS06885 PF02558 Ketopantoate reductase PanE/ApbA AVL55_RS06895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS06895 PF09308 LuxQ, periplasmic AVL55_RS06895 PF00072 Response regulator receiver domain AVL55_RS06895 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS06915 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVL55_RS06915 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVL55_RS06920 PF01292 Prokaryotic cytochrome b561 AVL55_RS06925 PF00563 EAL domain AVL55_RS06925 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS06925 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS06930 PF01863 Protein of unknown function DUF45 AVL55_RS06940 PF00873 AcrB/AcrD/AcrF family AVL55_RS06950 PF08361 MAATS-type transcriptional repressor, C-terminal region AVL55_RS06950 PF00440 Bacterial regulatory proteins, tetR family AVL55_RS06955 PF00593 TonB dependent receptor AVL55_RS06955 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS06965 PF00873 AcrB/AcrD/AcrF family AVL55_RS06975 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS06985 PF02470 MlaD protein AVL55_RS06990 PF04403 Paraquat-inducible protein A AVL55_RS07000 PF00152 tRNA synthetases class II (D, K and N) AVL55_RS07000 PF01336 OB-fold nucleic acid binding domain AVL55_RS07010 PF01699 Sodium/calcium exchanger protein AVL55_RS07015 PF08443 RimK-like ATP-grasp domain AVL55_RS07015 PF18030 RimK PreATP-grasp domain AVL55_RS07035 PF00202 Aminotransferase class-III AVL55_RS07040 PF06968 Biotin and Thiamin Synthesis associated domain AVL55_RS07040 PF04055 Radical SAM superfamily AVL55_RS07045 PF00155 Aminotransferase class I and II AVL55_RS07050 PF08241 Methyltransferase domain AVL55_RS07060 PF03575 Peptidase family S51 AVL55_RS07065 PF01451 Low molecular weight phosphotyrosine protein phosphatase AVL55_RS07070 PF01032 FecCD transport family AVL55_RS07075 PF00005 ABC transporter AVL55_RS07080 PF01474 Class-II DAHP synthetase family AVL55_RS07085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS07085 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS07085 PF02702 Osmosensitive K+ channel His kinase sensor domain AVL55_RS07085 PF13493 Domain of unknown function (DUF4118) AVL55_RS07090 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS07090 PF00072 Response regulator receiver domain AVL55_RS07095 PF02080 TrkA-C domain AVL55_RS07095 PF02254 TrkA-N domain AVL55_RS07100 PF02386 Cation transport protein AVL55_RS07115 PF00005 ABC transporter AVL55_RS07115 PF00664 ABC transporter transmembrane region AVL55_RS07125 PF04055 Radical SAM superfamily AVL55_RS07125 PF06463 Molybdenum Cofactor Synthesis C AVL55_RS07135 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS07135 PF00072 Response regulator receiver domain AVL55_RS07155 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVL55_RS07195 PF01207 Dihydrouridine synthase (Dus) AVL55_RS07205 PF13472 GDSL-like Lipase/Acylhydrolase family AVL55_RS07210 PF00005 ABC transporter AVL55_RS07220 PF08338 Domain of unknown function (DUF1731) AVL55_RS07220 PF01370 NAD dependent epimerase/dehydratase family AVL55_RS07225 PF02152 Dihydroneopterin aldolase AVL55_RS07230 PF01594 AI-2E family transporter AVL55_RS07235 PF08918 PhoQ Sensor AVL55_RS07235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS07240 PF00072 Response regulator receiver domain AVL55_RS07240 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS07255 PF03795 YCII-related domain AVL55_RS07260 PF00290 Tryptophan synthase alpha chain AVL55_RS07265 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_RS07270 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AVL55_RS07270 PF00218 Indole-3-glycerol phosphate synthase AVL55_RS07275 PF02885 Glycosyl transferase family, helical bundle domain AVL55_RS07275 PF00591 Glycosyl transferase family, a/b domain AVL55_RS07280 PF00117 Glutamine amidotransferase class-I AVL55_RS07285 PF04715 Anthranilate synthase component I, N terminal region AVL55_RS07285 PF00425 chorismate binding enzyme AVL55_RS07290 PF02811 PHP domain AVL55_RS07295 PF01300 Telomere recombination AVL55_RS07300 PF02616 Segregation and condensation protein ScpA AVL55_RS07305 PF04079 Segregation and condensation complex subunit ScpB AVL55_RS07310 PF00849 RNA pseudouridylate synthase AVL55_RS07310 PF01479 S4 domain AVL55_RS07315 PF00248 Aldo/keto reductase family AVL55_RS07320 PF14602 Hexapeptide repeat of succinyl-transferase AVL55_RS07320 PF12464 Maltose acetyltransferase AVL55_RS07330 PF04286 Protein of unknown function (DUF445) AVL55_RS07335 PF05724 Thiopurine S-methyltransferase (TPMT) AVL55_RS07340 PF04355 SmpA / OmlA family AVL55_RS07345 PF02463 RecF/RecN/SMC N terminal domain AVL55_RS07350 PF00210 Ferritin-like domain AVL55_RS07355 PF01513 ATP-NAD kinase AVL55_RS07365 PF00465 Iron-containing alcohol dehydrogenase AVL55_RS07380 PF00561 alpha/beta hydrolase fold AVL55_RS07390 PF00593 TonB dependent receptor AVL55_RS07390 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS07395 PF00072 Response regulator receiver domain AVL55_RS07395 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS07405 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_RS07405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS07405 PF00072 Response regulator receiver domain AVL55_RS07405 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS07410 PF01025 GrpE AVL55_RS07415 PF00012 Hsp70 protein AVL55_RS07420 PF00684 DnaJ central domain AVL55_RS07420 PF01556 DnaJ C terminal domain AVL55_RS07420 PF00226 DnaJ domain AVL55_RS07425 PF01322 Cytochrome C' AVL55_RS07430 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS07430 PF00563 EAL domain AVL55_RS07430 PF13426 PAS domain AVL55_RS07435 PF16177 Acetyl-coenzyme A synthetase N-terminus AVL55_RS07435 PF00501 AMP-binding enzyme AVL55_RS07435 PF13193 AMP-binding enzyme C-terminal domain AVL55_RS07445 PF01113 Dihydrodipicolinate reductase, N-terminus AVL55_RS07445 PF05173 Dihydrodipicolinate reductase, C-terminus AVL55_RS07450 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AVL55_RS07450 PF00117 Glutamine amidotransferase class-I AVL55_RS07455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVL55_RS07455 PF02142 MGS-like domain AVL55_RS07455 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AVL55_RS07460 PF01272 Transcription elongation factor, GreA/GreB, C-term AVL55_RS07460 PF03449 Transcription elongation factor, N-terminal AVL55_RS07480 PF00011 Hsp20/alpha crystallin family AVL55_RS07485 PF00871 Acetokinase family AVL55_RS07490 PF07085 DRTGG domain AVL55_RS07490 PF01515 Phosphate acetyl/butaryl transferase AVL55_RS07495 PF01979 Amidohydrolase family AVL55_RS07500 PF00795 Carbon-nitrogen hydrolase AVL55_RS07505 PF00571 CBS domain AVL55_RS07505 PF03471 Transporter associated domain AVL55_RS07510 PF02130 Uncharacterized protein family UPF0054 AVL55_RS07515 PF02562 PhoH-like protein AVL55_RS07520 PF04055 Radical SAM superfamily AVL55_RS07520 PF00919 Uncharacterized protein family UPF0004 AVL55_RS07520 PF01938 TRAM domain AVL55_RS07525 PF01494 FAD binding domain AVL55_RS07540 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS07540 PF00593 TonB dependent receptor AVL55_RS07545 PF03061 Thioesterase superfamily AVL55_RS07550 PF01613 Flavin reductase like domain AVL55_RS07560 PF01235 Sodium:alanine symporter family AVL55_RS07590 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVL55_RS07595 PF06071 Protein of unknown function (DUF933) AVL55_RS07595 PF01926 50S ribosome-binding GTPase AVL55_RS07600 PF01195 Peptidyl-tRNA hydrolase AVL55_RS07605 PF01386 Ribosomal L25p family AVL55_RS07605 PF14693 Ribosomal protein TL5, C-terminal domain AVL55_RS07610 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_RS07610 PF00107 Zinc-binding dehydrogenase AVL55_RS07620 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AVL55_RS07620 PF14572 Phosphoribosyl synthetase-associated domain AVL55_RS07630 PF08544 GHMP kinases C terminal AVL55_RS07630 PF00288 GHMP kinases N terminal domain AVL55_RS07635 PF03550 Outer membrane lipoprotein LolB AVL55_RS07640 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AVL55_RS07640 PF01488 Shikimate / quinate 5-dehydrogenase AVL55_RS07640 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AVL55_RS07645 PF03462 PCRF domain AVL55_RS07645 PF00472 RF-1 domain AVL55_RS07650 PF13847 Methyltransferase domain AVL55_RS07650 PF17827 PrmC N-terminal domain AVL55_RS07655 PF11849 Domain of unknown function (DUF3369) AVL55_RS07660 PF04247 Invasion gene expression up-regulator, SirB AVL55_RS07665 PF00793 DAHP synthetase I family AVL55_RS07675 PF03466 LysR substrate binding domain AVL55_RS07675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS07685 PF04241 Protein of unknown function (DUF423) AVL55_RS07690 PF01728 FtsJ-like methyltransferase AVL55_RS07690 PF18125 RlmM ferredoxin-like domain AVL55_RS07695 PF03144 Elongation factor Tu domain 2 AVL55_RS07695 PF14492 Elongation Factor G, domain II AVL55_RS07695 PF00679 Elongation factor G C-terminus AVL55_RS07695 PF03764 Elongation factor G, domain IV AVL55_RS07695 PF00009 Elongation factor Tu GTP binding domain AVL55_RS07700 PF02560 Cyanate lyase C-terminal domain AVL55_RS07705 PF00069 Protein kinase domain AVL55_RS07710 PF01226 Formate/nitrite transporter AVL55_RS07715 PF13559 Domain of unknown function (DUF4129) AVL55_RS07715 PF11992 Domain of unknown function (DUF3488) AVL55_RS07715 PF01841 Transglutaminase-like superfamily AVL55_RS07725 PF17863 AAA lid domain AVL55_RS07725 PF07726 ATPase family associated with various cellular activities (AAA) AVL55_RS07730 PF17206 SeqA protein N-terminal domain AVL55_RS07730 PF03925 SeqA protein C-terminal domain AVL55_RS07735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVL55_RS07735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVL55_RS07735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVL55_RS07735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVL55_RS07740 PF00343 Carbohydrate phosphorylase AVL55_RS07745 PF00563 EAL domain AVL55_RS07745 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS07745 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS07750 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVL55_RS07760 PF01906 Putative heavy-metal-binding AVL55_RS07765 PF00326 Prolyl oligopeptidase family AVL55_RS07770 PF00375 Sodium:dicarboxylate symporter family AVL55_RS07785 PF07687 Peptidase dimerisation domain AVL55_RS07785 PF01546 Peptidase family M20/M25/M40 AVL55_RS07790 PF03960 ArsC family AVL55_RS07815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_RS07820 PF04209 homogentisate 1,2-dioxygenase AVL55_RS07845 PF01548 Transposase AVL55_RS07845 PF02371 Transposase IS116/IS110/IS902 family AVL55_RS07865 PF12706 Beta-lactamase superfamily domain AVL55_RS07870 PF00873 AcrB/AcrD/AcrF family AVL55_RS07880 PF02254 TrkA-N domain AVL55_RS07880 PF00999 Sodium/hydrogen exchanger family AVL55_RS07885 PF02525 Flavodoxin-like fold AVL55_RS07900 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL55_RS07905 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_RS07905 PF01799 [2Fe-2S] binding domain AVL55_RS07910 PF01638 HxlR-like helix-turn-helix AVL55_RS07920 PF08447 PAS fold AVL55_RS07920 PF05231 MASE1 AVL55_RS07920 PF13426 PAS domain AVL55_RS07920 PF08448 PAS fold AVL55_RS07920 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS07920 PF00563 EAL domain AVL55_RS07930 PF01979 Amidohydrolase family AVL55_RS07935 PF00576 HIUase/Transthyretin family AVL55_RS07950 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_RS07950 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL55_RS07955 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_RS07955 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL55_RS07955 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_RS07955 PF01799 [2Fe-2S] binding domain AVL55_RS07960 PF00440 Bacterial regulatory proteins, tetR family AVL55_RS07960 PF08362 YcdC-like protein, C-terminal region AVL55_RS07975 PF00860 Permease family AVL55_RS07980 PF00962 Adenosine/AMP deaminase AVL55_RS07995 PF00072 Response regulator receiver domain AVL55_RS07995 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS08000 PF00072 Response regulator receiver domain AVL55_RS08000 PF09308 LuxQ, periplasmic AVL55_RS08000 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS08000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS08010 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS08010 PF00593 TonB dependent receptor AVL55_RS08015 PF00860 Permease family AVL55_RS08030 PF01546 Peptidase family M20/M25/M40 AVL55_RS08030 PF07687 Peptidase dimerisation domain AVL55_RS08035 PF00266 Aminotransferase class-V AVL55_RS08040 PF01925 Sulfite exporter TauE/SafE AVL55_RS08050 PF01425 Amidase AVL55_RS08085 PF03881 Fructosamine kinase AVL55_RS08090 PF02824 TGS domain AVL55_RS08090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVL55_RS08090 PF03129 Anticodon binding domain AVL55_RS08090 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AVL55_RS08095 PF00707 Translation initiation factor IF-3, C-terminal domain AVL55_RS08095 PF05198 Translation initiation factor IF-3, N-terminal domain AVL55_RS08100 PF01632 Ribosomal protein L35 AVL55_RS08105 PF00453 Ribosomal protein L20 AVL55_RS08110 PF01050 Mannose-6-phosphate isomerase AVL55_RS08110 PF00483 Nucleotidyl transferase AVL55_RS08115 PF02397 Bacterial sugar transferase AVL55_RS08125 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AVL55_RS08125 PF02563 Polysaccharide biosynthesis/export protein AVL55_RS08125 PF10531 SLBB domain AVL55_RS08130 PF13614 AAA domain AVL55_RS08180 PF13477 Glycosyl transferase 4-like AVL55_RS08180 PF00534 Glycosyl transferases group 1 AVL55_RS08185 PF00535 Glycosyl transferase family 2 AVL55_RS08190 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVL55_RS08195 PF01565 FAD binding domain AVL55_RS08195 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AVL55_RS08200 PF00534 Glycosyl transferases group 1 AVL55_RS08200 PF13439 Glycosyltransferase Family 4 AVL55_RS08210 PF00535 Glycosyl transferase family 2 AVL55_RS08230 PF00534 Glycosyl transferases group 1 AVL55_RS08230 PF13439 Glycosyltransferase Family 4 AVL55_RS08235 PF03050 Transposase IS66 family AVL55_RS08235 PF13817 IS66 C-terminal element AVL55_RS08235 PF13007 Transposase C of IS166 homeodomain AVL55_RS08235 PF13005 zinc-finger binding domain of transposase IS66 AVL55_RS08245 PF01409 tRNA synthetases class II core domain (F) AVL55_RS08245 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AVL55_RS08250 PF03483 B3/4 domain AVL55_RS08250 PF03484 tRNA synthetase B5 domain AVL55_RS08250 PF03147 Ferredoxin-fold anticodon binding domain AVL55_RS08250 PF01588 Putative tRNA binding domain AVL55_RS08250 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AVL55_RS08255 PF00216 Bacterial DNA-binding protein AVL55_RS08275 PF04073 Aminoacyl-tRNA editing domain AVL55_RS08280 PF01804 Penicillin amidase AVL55_RS08285 PF00933 Glycosyl hydrolase family 3 N terminal domain AVL55_RS08290 PF01923 Cobalamin adenosyltransferase AVL55_RS08300 PF02559 CarD-like/TRCF domain AVL55_RS08300 PF17757 UvrB interaction domain AVL55_RS08300 PF03461 TRCF domain AVL55_RS08300 PF00271 Helicase conserved C-terminal domain AVL55_RS08300 PF00270 DEAD/DEAH box helicase AVL55_RS08310 PF02687 FtsX-like permease family AVL55_RS08310 PF12704 MacB-like periplasmic core domain AVL55_RS08330 PF03372 Endonuclease/Exonuclease/phosphatase family AVL55_RS08365 PF07690 Major Facilitator Superfamily AVL55_RS08375 PF00483 Nucleotidyl transferase AVL55_RS08395 PF00682 HMGL-like AVL55_RS08400 PF00364 Biotin-requiring enzyme AVL55_RS08400 PF18140 Propionyl-coenzyme A carboxylase BT domain AVL55_RS08400 PF02785 Biotin carboxylase C-terminal domain AVL55_RS08400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVL55_RS08400 PF00289 Biotin carboxylase, N-terminal domain AVL55_RS08405 PF00378 Enoyl-CoA hydratase/isomerase AVL55_RS08410 PF01039 Carboxyl transferase domain AVL55_RS08415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_RS08415 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_RS08415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_RS08420 PF13411 MerR HTH family regulatory protein AVL55_RS08425 PF02803 Thiolase, C-terminal domain AVL55_RS08425 PF00108 Thiolase, N-terminal domain AVL55_RS08435 PF00266 Aminotransferase class-V AVL55_RS08450 PF08411 Exonuclease C-terminal AVL55_RS08450 PF00929 Exonuclease AVL55_RS08455 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS08455 PF01627 Hpt domain AVL55_RS08455 PF00072 Response regulator receiver domain AVL55_RS08455 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL55_RS08455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS08455 PF00672 HAMP domain AVL55_RS08460 PF01112 Asparaginase AVL55_RS08470 PF02333 Phytase AVL55_RS08485 PF12833 Helix-turn-helix domain AVL55_RS08485 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AVL55_RS08495 PF04408 Helicase associated domain (HA2) AVL55_RS08495 PF00271 Helicase conserved C-terminal domain AVL55_RS08495 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AVL55_RS08495 PF00270 DEAD/DEAH box helicase AVL55_RS08495 PF11898 Domain of unknown function (DUF3418) AVL55_RS08510 PF10672 S-adenosylmethionine-dependent methyltransferase AVL55_RS08510 PF17785 PUA-like domain AVL55_RS08515 PF00109 Beta-ketoacyl synthase, N-terminal domain AVL55_RS08515 PF14765 Polyketide synthase dehydratase AVL55_RS08515 PF00550 Phosphopantetheine attachment site AVL55_RS08515 PF02801 Beta-ketoacyl synthase, C-terminal domain AVL55_RS08515 PF08659 KR domain AVL55_RS08515 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_RS08515 PF16197 Ketoacyl-synthetase C-terminal extension AVL55_RS08515 PF00698 Acyl transferase domain AVL55_RS08520 PF00075 RNase H AVL55_RS08525 PF00929 Exonuclease AVL55_RS08550 PF00563 EAL domain AVL55_RS08550 PF12792 CSS motif domain associated with EAL AVL55_RS08555 PF00005 ABC transporter AVL55_RS08560 PF12704 MacB-like periplasmic core domain AVL55_RS08560 PF02687 FtsX-like permease family AVL55_RS08565 PF00375 Sodium:dicarboxylate symporter family AVL55_RS08570 PF02369 Bacterial Ig-like domain (group 1) AVL55_RS08570 PF11924 Inverse autotransporter, beta-domain AVL55_RS08570 PF09134 Invasin, domain 3 AVL55_RS08575 PF04996 Succinylarginine dihydrolase AVL55_RS08580 PF08272 Topoisomerase I zinc-ribbon-like AVL55_RS08580 PF01131 DNA topoisomerase AVL55_RS08580 PF01751 Toprim domain AVL55_RS08580 PF01396 Topoisomerase DNA binding C4 zinc finger AVL55_RS08585 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AVL55_RS08595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS08595 PF03466 LysR substrate binding domain AVL55_RS08600 PF12804 MobA-like NTP transferase domain AVL55_RS08605 PF02634 FdhD/NarQ family AVL55_RS08610 PF00384 Molybdopterin oxidoreductase AVL55_RS08615 PF13673 Acetyltransferase (GNAT) domain AVL55_RS08620 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS08620 PF00072 Response regulator receiver domain AVL55_RS08625 PF00672 HAMP domain AVL55_RS08625 PF18698 Histidine kinase sensor domain AVL55_RS08625 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS08625 PF00989 PAS fold AVL55_RS08625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS08635 PF12111 Polyribonucleotide phosphorylase C terminal AVL55_RS08635 PF10150 Ribonuclease E/G family AVL55_RS08635 PF00575 S1 RNA binding domain AVL55_RS08640 PF00849 RNA pseudouridylate synthase AVL55_RS08640 PF01479 S4 domain AVL55_RS08645 PF13419 Haloacid dehalogenase-like hydrolase AVL55_RS08650 PF02545 Maf-like protein AVL55_RS08655 PF02620 Large ribosomal RNA subunit accumulation protein YceD AVL55_RS08660 PF01783 Ribosomal L32p protein family AVL55_RS08665 PF02504 Fatty acid synthesis protein AVL55_RS08670 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AVL55_RS08670 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AVL55_RS08675 PF00698 Acyl transferase domain AVL55_RS08685 PF00550 Phosphopantetheine attachment site AVL55_RS08690 PF02801 Beta-ketoacyl synthase, C-terminal domain AVL55_RS08690 PF00109 Beta-ketoacyl synthase, N-terminal domain AVL55_RS08695 PF01063 Amino-transferase class IV AVL55_RS08700 PF02618 YceG-like family AVL55_RS08705 PF02223 Thymidylate kinase AVL55_RS08710 PF09115 DNA polymerase III, delta subunit, C terminal AVL55_RS08715 PF01026 TatD related DNase AVL55_RS08725 PF13460 NAD(P)H-binding AVL55_RS08730 PF08448 PAS fold AVL55_RS08730 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS08760 PF00561 alpha/beta hydrolase fold AVL55_RS08765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AVL55_RS08765 PF00378 Enoyl-CoA hydratase/isomerase AVL55_RS08765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AVL55_RS08770 PF00108 Thiolase, N-terminal domain AVL55_RS08770 PF02803 Thiolase, C-terminal domain AVL55_RS08775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_RS08775 PF12806 Acetyl-CoA dehydrogenase C-terminal like AVL55_RS08775 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_RS08775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_RS08790 PF04198 Putative sugar-binding domain AVL55_RS08800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS08800 PF03466 LysR substrate binding domain AVL55_RS08805 PF01575 MaoC like domain AVL55_RS08815 PF00924 Mechanosensitive ion channel AVL55_RS08825 PF01329 Pterin 4 alpha carbinolamine dehydratase AVL55_RS08840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS08840 PF00072 Response regulator receiver domain AVL55_RS08840 PF01627 Hpt domain AVL55_RS08840 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS08845 PF00072 Response regulator receiver domain AVL55_RS08850 PF02576 RimP N-terminal domain AVL55_RS08850 PF17384 RimP C-terminal SH3 domain AVL55_RS08855 PF08529 NusA N-terminal domain AVL55_RS08855 PF13184 NusA-like KH domain AVL55_RS08855 PF00575 S1 RNA binding domain AVL55_RS08860 PF11987 Translation-initiation factor 2 AVL55_RS08860 PF08364 Bacterial translation initiation factor IF-2 associated region AVL55_RS08860 PF04760 Translation initiation factor IF-2, N-terminal region AVL55_RS08860 PF00009 Elongation factor Tu GTP binding domain AVL55_RS08865 PF02033 Ribosome-binding factor A AVL55_RS08870 PF09157 Pseudouridine synthase II TruB, C-terminal AVL55_RS08870 PF16198 tRNA pseudouridylate synthase B C-terminal domain AVL55_RS08870 PF01509 TruB family pseudouridylate synthase (N terminal domain) AVL55_RS08875 PF00312 Ribosomal protein S15 AVL55_RS08880 PF01479 S4 domain AVL55_RS08880 PF00849 RNA pseudouridylate synthase AVL55_RS08890 PF00795 Carbon-nitrogen hydrolase AVL55_RS08890 PF00583 Acetyltransferase (GNAT) family AVL55_RS08915 PF00578 AhpC/TSA family AVL55_RS08915 PF10417 C-terminal domain of 1-Cys peroxiredoxin AVL55_RS08920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS08920 PF13192 Thioredoxin domain AVL55_RS08925 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS08925 PF00593 TonB dependent receptor AVL55_RS08955 PF11842 Domain of unknown function (DUF3362) AVL55_RS08955 PF04055 Radical SAM superfamily AVL55_RS08955 PF08497 Radical SAM N-terminal AVL55_RS08980 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS08980 PF00593 TonB dependent receptor AVL55_RS08990 PF00005 ABC transporter AVL55_RS09000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_RS09005 PF01668 SmpB protein AVL55_RS09010 PF03364 Polyketide cyclase / dehydrase and lipid transport AVL55_RS09015 PF03658 RnfH family Ubiquitin AVL55_RS09025 PF02028 BCCT, betaine/carnitine/choline family transporter AVL55_RS09030 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS09030 PF00593 TonB dependent receptor AVL55_RS09035 PF13181 Tetratricopeptide repeat AVL55_RS09040 PF03618 Kinase/pyrophosphorylase AVL55_RS09045 PF00391 PEP-utilising enzyme, mobile domain AVL55_RS09045 PF02896 PEP-utilising enzyme, TIM barrel domain AVL55_RS09045 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AVL55_RS09050 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL55_RS09055 PF01799 [2Fe-2S] binding domain AVL55_RS09055 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_RS09075 PF08007 Cupin superfamily protein AVL55_RS09080 PF00211 Adenylate and Guanylate cyclase catalytic domain AVL55_RS09085 PF08328 Adenylosuccinate lyase C-terminal AVL55_RS09085 PF00206 Lyase AVL55_RS09090 PF04356 Protein of unknown function (DUF489) AVL55_RS09100 PF00849 RNA pseudouridylate synthase AVL55_RS09105 PF03971 Monomeric isocitrate dehydrogenase AVL55_RS09110 PF00313 'Cold-shock' DNA-binding domain AVL55_RS09115 PF02617 ATP-dependent Clp protease adaptor protein ClpS AVL55_RS09120 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_RS09120 PF10431 C-terminal, D2-small domain, of ClpB protein AVL55_RS09120 PF17871 AAA lid domain AVL55_RS09120 PF07724 AAA domain (Cdc48 subfamily) AVL55_RS09120 PF02861 Clp amino terminal domain, pathogenicity island component AVL55_RS09125 PF01176 Translation initiation factor 1A / IF-1 AVL55_RS09130 PF04377 Arginine-tRNA-protein transferase, C terminus AVL55_RS09130 PF04376 Arginine-tRNA-protein transferase, N terminus AVL55_RS09135 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AVL55_RS09140 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS09145 PF04217 Protein of unknown function, DUF412 AVL55_RS09150 PF17283 SprT-like zinc ribbon domain AVL55_RS09150 PF10263 SprT-like family AVL55_RS09155 PF01343 Peptidase family S49 AVL55_RS09170 PF00881 Nitroreductase family AVL55_RS09180 PF17763 Glutaminase/Asparaginase C-terminal domain AVL55_RS09180 PF00710 Asparaginase, N-terminal AVL55_RS09185 PF04055 Radical SAM superfamily AVL55_RS09185 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AVL55_RS09190 PF03099 Biotin/lipoate A/B protein ligase family AVL55_RS09195 PF04359 Protein of unknown function (DUF493) AVL55_RS09200 PF00768 D-alanyl-D-alanine carboxypeptidase AVL55_RS09200 PF07943 Penicillin-binding protein 5, C-terminal domain AVL55_RS09205 PF05036 Sporulation related domain AVL55_RS09205 PF03330 Lytic transglycolase AVL55_RS09210 PF01098 Cell cycle protein AVL55_RS09215 PF03717 Penicillin-binding Protein dimerisation domain AVL55_RS09215 PF00905 Penicillin binding protein transpeptidase domain AVL55_RS09220 PF02590 Predicted SPOUT methyltransferase AVL55_RS09230 PF01467 Cytidylyltransferase-like AVL55_RS09235 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AVL55_RS09235 PF06144 DNA polymerase III, delta subunit AVL55_RS09240 PF04390 Lipopolysaccharide-assembly AVL55_RS09245 PF00133 tRNA synthetases class I (I, L, M and V) AVL55_RS09245 PF13603 Leucyl-tRNA synthetase, Domain 2 AVL55_RS09245 PF08264 Anticodon-binding domain of tRNA AVL55_RS09255 PF05362 Lon protease (S16) C-terminal proteolytic domain AVL55_RS09255 PF13654 AAA domain AVL55_RS09270 PF00106 short chain dehydrogenase AVL55_RS09275 PF01985 CRS1 / YhbY (CRM) domain AVL55_RS09280 PF01728 FtsJ-like methyltransferase AVL55_RS09285 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_RS09285 PF17862 AAA+ lid domain AVL55_RS09285 PF01434 Peptidase family M41 AVL55_RS09285 PF06480 FtsH Extracellular AVL55_RS09290 PF00809 Pterin binding enzyme AVL55_RS09295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVL55_RS09295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVL55_RS09295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVL55_RS09295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVL55_RS09300 PF00121 Triosephosphate isomerase AVL55_RS09305 PF03840 Preprotein translocase SecG subunit AVL55_RS09315 PF00563 EAL domain AVL55_RS09315 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS09315 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS09325 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AVL55_RS09325 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVL55_RS09330 PF02142 MGS-like domain AVL55_RS09330 PF00781 Diacylglycerol kinase catalytic domain AVL55_RS09360 PF00474 Sodium:solute symporter family AVL55_RS09365 PF00696 Amino acid kinase family AVL55_RS09370 PF00171 Aldehyde dehydrogenase family AVL55_RS09385 PF00575 S1 RNA binding domain AVL55_RS09385 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AVL55_RS09385 PF03725 3' exoribonuclease family, domain 2 AVL55_RS09385 PF00013 KH domain AVL55_RS09385 PF01138 3' exoribonuclease family, domain 1 AVL55_RS09435 PF03544 Gram-negative bacterial TonB protein C-terminal AVL55_RS09455 PF07719 Tetratricopeptide repeat AVL55_RS09455 PF13181 Tetratricopeptide repeat AVL55_RS09470 PF06470 SMC proteins Flexible Hinge Domain AVL55_RS09470 PF02463 RecF/RecN/SMC N terminal domain AVL55_RS09475 PF04354 ZipA, C-terminal FtsZ-binding domain AVL55_RS09480 PF01653 NAD-dependent DNA ligase adenylation domain AVL55_RS09480 PF03120 NAD-dependent DNA ligase OB-fold domain AVL55_RS09480 PF00533 BRCA1 C Terminus (BRCT) domain AVL55_RS09480 PF12826 Helix-hairpin-helix motif AVL55_RS09480 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AVL55_RS09500 PF00005 ABC transporter AVL55_RS09500 PF00664 ABC transporter transmembrane region AVL55_RS09505 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AVL55_RS09510 PF03966 Trm112p-like protein AVL55_RS09515 PF02348 Cytidylyltransferase AVL55_RS09520 PF00106 short chain dehydrogenase AVL55_RS09525 PF04055 Radical SAM superfamily AVL55_RS09525 PF18693 TRAM domain AVL55_RS09525 PF00919 Uncharacterized protein family UPF0004 AVL55_RS09540 PF00899 ThiF family AVL55_RS09545 PF13409 Glutathione S-transferase, N-terminal domain AVL55_RS09550 PF02678 Pirin AVL55_RS09550 PF05726 Pirin C-terminal cupin domain AVL55_RS09560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AVL55_RS09560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AVL55_RS09560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AVL55_RS09560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AVL55_RS09575 PF00285 Citrate synthase, C-terminal domain AVL55_RS09580 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AVL55_RS09585 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AVL55_RS09590 PF00890 FAD binding domain AVL55_RS09590 PF02910 Fumarate reductase flavoprotein C-term AVL55_RS09595 PF13085 2Fe-2S iron-sulfur cluster binding domain AVL55_RS09600 PF00676 Dehydrogenase E1 component AVL55_RS09600 PF16870 2-oxoglutarate dehydrogenase C-terminal AVL55_RS09600 PF02779 Transketolase, pyrimidine binding domain AVL55_RS09600 PF16078 2-oxoglutarate dehydrogenase N-terminus AVL55_RS09605 PF02817 e3 binding domain AVL55_RS09605 PF00364 Biotin-requiring enzyme AVL55_RS09605 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVL55_RS09610 PF08442 ATP-grasp domain AVL55_RS09610 PF00549 CoA-ligase AVL55_RS09615 PF00549 CoA-ligase AVL55_RS09615 PF02629 CoA binding domain AVL55_RS09625 PF04820 Tryptophan halogenase AVL55_RS09635 PF17967 Pullulanase N2 domain AVL55_RS09635 PF03714 Bacterial pullanase-associated domain AVL55_RS09635 PF11852 Domain of unknown function (DUF3372) AVL55_RS09635 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVL55_RS09635 PF18494 Pullulanase Ins domain AVL55_RS09640 PF01734 Patatin-like phospholipase AVL55_RS09660 PF16657 Maltogenic Amylase, C-terminal domain AVL55_RS09660 PF02903 Alpha amylase, N-terminal ig-like domain AVL55_RS09660 PF00128 Alpha amylase, catalytic domain AVL55_RS09665 PF10438 Cyclo-malto-dextrinase C-terminal domain AVL55_RS09665 PF00128 Alpha amylase, catalytic domain AVL55_RS09665 PF09087 Cyclomaltodextrinase, N-terminal AVL55_RS09675 PF03423 Carbohydrate binding domain (family 25) AVL55_RS09675 PF01373 Glycosyl hydrolase family 14 AVL55_RS09675 PF00128 Alpha amylase, catalytic domain AVL55_RS09680 PF00356 Bacterial regulatory proteins, lacI family AVL55_RS09685 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVL55_RS09685 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AVL55_RS09690 PF00106 short chain dehydrogenase AVL55_RS09695 PF12262 Bacterial virulence factor lipase N-terminal AVL55_RS09700 PF01804 Penicillin amidase AVL55_RS09705 PF01343 Peptidase family S49 AVL55_RS09705 PF08496 Peptidase family S49 N-terminal AVL55_RS09720 PF01784 NIF3 (NGG1p interacting factor 3) AVL55_RS09730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL55_RS09730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL55_RS09735 PF00255 Glutathione peroxidase AVL55_RS09740 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVL55_RS09740 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVL55_RS09750 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_RS09750 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_RS09750 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_RS09755 PF00378 Enoyl-CoA hydratase/isomerase AVL55_RS09760 PF13847 Methyltransferase domain AVL55_RS09765 PF08645 Polynucleotide kinase 3 phosphatase AVL55_RS09770 PF11893 Domain of unknown function (DUF3413) AVL55_RS09770 PF00884 Sulfatase AVL55_RS09775 PF07208 Protein of unknown function (DUF1414) AVL55_RS09780 PF04245 37-kD nucleoid-associated bacterial protein AVL55_RS09790 PF01551 Peptidase family M23 AVL55_RS09790 PF10145 Phage-related minor tail protein AVL55_RS09790 PF01464 Transglycosylase SLT domain AVL55_RS09810 PF07694 5TMR of 5TMR-LYT AVL55_RS09810 PF06580 Histidine kinase AVL55_RS09810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS09815 PF04397 LytTr DNA-binding domain AVL55_RS09815 PF00072 Response regulator receiver domain AVL55_RS09820 PF00365 Phosphofructokinase AVL55_RS09835 PF00497 Bacterial extracellular solute-binding proteins, family 3 AVL55_RS09835 PF00989 PAS fold AVL55_RS09835 PF00072 Response regulator receiver domain AVL55_RS09835 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS09835 PF01627 Hpt domain AVL55_RS09835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS09845 PF17773 UPF0176 acylphosphatase like domain AVL55_RS09845 PF00581 Rhodanese-like domain AVL55_RS09865 PF00550 Phosphopantetheine attachment site AVL55_RS09865 PF14765 Polyketide synthase dehydratase AVL55_RS09865 PF08659 KR domain AVL55_RS09865 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_RS09865 PF00698 Acyl transferase domain AVL55_RS09870 PF00106 short chain dehydrogenase AVL55_RS09875 PF03466 LysR substrate binding domain AVL55_RS09875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS09925 PF13538 UvrD-like helicase C-terminal domain AVL55_RS09925 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AVL55_RS09925 PF14490 Helix-hairpin-helix containing domain AVL55_RS09950 PF00271 Helicase conserved C-terminal domain AVL55_RS09950 PF00270 DEAD/DEAH box helicase AVL55_RS09955 PF01144 Coenzyme A transferase AVL55_RS09960 PF01144 Coenzyme A transferase AVL55_RS09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS09965 PF03466 LysR substrate binding domain AVL55_RS09980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS09980 PF03466 LysR substrate binding domain AVL55_RS09985 PF03313 Serine dehydratase alpha chain AVL55_RS09985 PF03315 Serine dehydratase beta chain AVL55_RS09990 PF00293 NUDIX domain AVL55_RS09995 PF04715 Anthranilate synthase component I, N terminal region AVL55_RS09995 PF00425 chorismate binding enzyme AVL55_RS10005 PF02646 RmuC family AVL55_RS10010 PF13860 FlgD Ig-like domain AVL55_RS10010 PF05922 Peptidase inhibitor I9 AVL55_RS10010 PF02225 PA domain AVL55_RS10010 PF00082 Subtilase family AVL55_RS10015 PF00676 Dehydrogenase E1 component AVL55_RS10020 PF02779 Transketolase, pyrimidine binding domain AVL55_RS10020 PF02780 Transketolase, C-terminal domain AVL55_RS10025 PF02817 e3 binding domain AVL55_RS10025 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVL55_RS10025 PF00364 Biotin-requiring enzyme AVL55_RS10030 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AVL55_RS10035 PF00069 Protein kinase domain AVL55_RS10045 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_RS10050 PF00266 Aminotransferase class-V AVL55_RS10060 PF13185 GAF domain AVL55_RS10070 PF04352 ProQ/FINO family AVL55_RS10070 PF17516 ProQ C-terminal domain AVL55_RS10075 PF11818 C-terminal domain of tail specific protease (DUF3340) AVL55_RS10075 PF00595 PDZ domain AVL55_RS10075 PF17804 Tail specific protease N-terminal domain AVL55_RS10075 PF03572 Peptidase family S41 AVL55_RS10080 PF00209 Sodium:neurotransmitter symporter family AVL55_RS10085 PF03553 Na+/H+ antiporter family AVL55_RS10090 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AVL55_RS10090 PF11940 Domain of unknown function (DUF3458) Ig-like fold AVL55_RS10090 PF01433 Peptidase family M1 domain AVL55_RS10105 PF07044 Protein of unknown function (DUF1329) AVL55_RS10120 PF05088 Bacterial NAD-glutamate dehydrogenase AVL55_RS10125 PF01180 Dihydroorotate dehydrogenase AVL55_RS10130 PF10672 S-adenosylmethionine-dependent methyltransferase AVL55_RS10130 PF02926 THUMP domain AVL55_RS10130 PF01170 Putative RNA methylase family UPF0020 AVL55_RS10140 PF12848 ABC transporter AVL55_RS10140 PF00005 ABC transporter AVL55_RS10140 PF16326 ABC transporter C-terminal domain AVL55_RS10150 PF04957 Ribosome modulation factor AVL55_RS10155 PF07977 FabA-like domain AVL55_RS10165 PF00875 DNA photolyase AVL55_RS10165 PF03441 FAD binding domain of DNA photolyase AVL55_RS10195 PF13614 AAA domain AVL55_RS10200 PF17762 HTH domain found in ParB protein AVL55_RS10200 PF02195 ParB-like nuclease domain AVL55_RS10225 PF00239 Resolvase, N terminal domain AVL55_RS10225 PF02796 Helix-turn-helix domain of resolvase AVL55_RS10280 PF13614 AAA domain AVL55_RS10355 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS10355 PF08448 PAS fold AVL55_RS10375 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS10375 PF00563 EAL domain AVL55_RS10375 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS10410 PF00437 Type II/IV secretion system protein AVL55_RS10455 PF13361 UvrD-like helicase C-terminal domain AVL55_RS10455 PF00580 UvrD/REP helicase N-terminal domain AVL55_RS10660 PF03441 FAD binding domain of DNA photolyase AVL55_RS10660 PF00875 DNA photolyase AVL55_RS10665 PF00875 DNA photolyase AVL55_RS10665 PF03441 FAD binding domain of DNA photolyase AVL55_RS10670 PF00875 DNA photolyase AVL55_RS10670 PF03441 FAD binding domain of DNA photolyase AVL55_RS10675 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AVL55_RS10685 PF00589 Phage integrase family AVL55_RS10685 PF02899 Phage integrase, N-terminal SAM-like domain AVL55_RS10695 PF01219 Prokaryotic diacylglycerol kinase AVL55_RS10700 PF00582 Universal stress protein family AVL55_RS10710 PF01645 Conserved region in glutamate synthase AVL55_RS10715 PF00999 Sodium/hydrogen exchanger family AVL55_RS10720 PF00210 Ferritin-like domain AVL55_RS10725 PF00210 Ferritin-like domain AVL55_RS10735 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL55_RS10750 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AVL55_RS10750 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVL55_RS10760 PF00403 Heavy-metal-associated domain AVL55_RS10775 PF13545 Crp-like helix-turn-helix domain AVL55_RS10775 PF00027 Cyclic nucleotide-binding domain AVL55_RS10780 PF00582 Universal stress protein family AVL55_RS10785 PF01171 PP-loop family AVL55_RS10790 PF01734 Patatin-like phospholipase AVL55_RS10810 PF01810 LysE type translocator AVL55_RS10815 PF02146 Sir2 family AVL55_RS10820 PF00581 Rhodanese-like domain AVL55_RS10825 PF08534 Redoxin AVL55_RS10830 PF03942 DTW domain AVL55_RS10850 PF01066 CDP-alcohol phosphatidyltransferase AVL55_RS10855 PF08459 UvrC Helix-hairpin-helix N-terminal AVL55_RS10855 PF01541 GIY-YIG catalytic domain AVL55_RS10855 PF02151 UvrB/uvrC motif AVL55_RS10860 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS10860 PF00072 Response regulator receiver domain AVL55_RS10865 PF02678 Pirin AVL55_RS10865 PF17954 Quercetinase C-terminal cupin domain AVL55_RS10895 PF07681 DoxX AVL55_RS10900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS10900 PF03466 LysR substrate binding domain AVL55_RS10915 PF01027 Inhibitor of apoptosis-promoting Bax1 AVL55_RS10920 PF02635 DsrE/DsrF-like family AVL55_RS10935 PF04358 DsrC like protein AVL55_RS10955 PF02403 Seryl-tRNA synthetase N-terminal domain AVL55_RS10955 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVL55_RS10960 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AVL55_RS10965 PF12002 MgsA AAA+ ATPase C terminal AVL55_RS10965 PF16193 AAA C-terminal domain AVL55_RS10965 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_RS10970 PF03548 Outer membrane lipoprotein carrier protein LolA AVL55_RS10975 PF01580 FtsK/SpoIIIE family AVL55_RS10975 PF09397 Ftsk gamma domain AVL55_RS10975 PF17854 FtsK alpha domain AVL55_RS10975 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AVL55_RS10980 PF01037 Lrp/AsnC ligand binding domain AVL55_RS10985 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AVL55_RS10985 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AVL55_RS10990 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AVL55_RS10995 PF18073 Rubredoxin metal binding domain AVL55_RS11010 PF00216 Bacterial DNA-binding protein AVL55_RS11015 PF00575 S1 RNA binding domain AVL55_RS11020 PF02224 Cytidylate kinase AVL55_RS11025 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AVL55_RS11030 PF00266 Aminotransferase class-V AVL55_RS11035 PF03989 DNA gyrase C-terminal domain, beta-propeller AVL55_RS11035 PF00521 DNA gyrase/topoisomerase IV, subunit A AVL55_RS11045 PF02867 Ribonucleotide reductase, barrel domain AVL55_RS11045 PF03477 ATP cone domain AVL55_RS11045 PF00317 Ribonucleotide reductase, all-alpha domain AVL55_RS11050 PF00268 Ribonucleotide reductase, small chain AVL55_RS11055 PF00268 Ribonucleotide reductase, small chain AVL55_RS11115 PF13361 UvrD-like helicase C-terminal domain AVL55_RS11115 PF00580 UvrD/REP helicase N-terminal domain AVL55_RS11115 PF12462 DNA helicase IV / RNA helicase N terminal AVL55_RS11195 PF00268 Ribonucleotide reductase, small chain AVL55_RS11200 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_RS11205 PF00106 short chain dehydrogenase AVL55_RS11215 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS11215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_RS11220 PF00360 Phytochrome region AVL55_RS11220 PF00563 EAL domain AVL55_RS11220 PF01590 GAF domain AVL55_RS11220 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS11225 PF00892 EamA-like transporter family AVL55_RS11230 PF01259 SAICAR synthetase AVL55_RS11235 PF06804 NlpB/DapX lipoprotein AVL55_RS11240 PF00701 Dihydrodipicolinate synthetase family AVL55_RS11250 PF00578 AhpC/TSA family AVL55_RS11255 PF01594 AI-2E family transporter AVL55_RS11260 PF01435 Peptidase family M48 AVL55_RS11265 PF00578 AhpC/TSA family AVL55_RS11270 PF03960 ArsC family AVL55_RS11275 PF03358 NADPH-dependent FMN reductase AVL55_RS11290 PF00308 Bacterial dnaA protein AVL55_RS11300 PF02769 AIR synthase related protein, C-terminal domain AVL55_RS11300 PF00586 AIR synthase related protein, N-terminal domain AVL55_RS11305 PF00551 Formyl transferase AVL55_RS11315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_RS11315 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_RS11315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_RS11315 PF09317 Domain of unknown function (DUF1974) AVL55_RS11325 PF00072 Response regulator receiver domain AVL55_RS11325 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS11330 PF13649 Methyltransferase domain AVL55_RS11335 PF08003 Protein of unknown function (DUF1698) AVL55_RS11355 PF00128 Alpha amylase, catalytic domain AVL55_RS11360 PF13419 Haloacid dehalogenase-like hydrolase AVL55_RS11365 PF00994 Probable molybdopterin binding domain AVL55_RS11365 PF03454 MoeA C-terminal region (domain IV) AVL55_RS11365 PF03453 MoeA N-terminal region (domain I and II) AVL55_RS11370 PF01554 MatE AVL55_RS11390 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_RS11415 PF03773 Predicted permease AVL55_RS11435 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AVL55_RS11450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_RS11450 PF12806 Acetyl-CoA dehydrogenase C-terminal like AVL55_RS11450 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_RS11450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_RS11455 PF12833 Helix-turn-helix domain AVL55_RS11455 PF07883 Cupin domain AVL55_RS11460 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS11460 PF00593 TonB dependent receptor AVL55_RS11470 PF00326 Prolyl oligopeptidase family AVL55_RS11470 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AVL55_RS11475 PF00873 AcrB/AcrD/AcrF family AVL55_RS11480 PF13533 Biotin-lipoyl like AVL55_RS11490 PF00766 Electron transfer flavoprotein FAD-binding domain AVL55_RS11490 PF01012 Electron transfer flavoprotein domain AVL55_RS11495 PF01012 Electron transfer flavoprotein domain AVL55_RS11505 PF00816 H-NS histone family AVL55_RS11510 PF00561 alpha/beta hydrolase fold AVL55_RS11520 PF00258 Flavodoxin AVL55_RS11525 PF01609 Transposase DDE domain AVL55_RS11525 PF13006 Insertion element 4 transposase N-terminal AVL55_RS11530 PF00672 HAMP domain AVL55_RS11530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS11535 PF01475 Ferric uptake regulator family AVL55_RS11540 PF01063 Amino-transferase class IV AVL55_RS11545 PF02626 Carboxyltransferase domain, subdomain A and B AVL55_RS11550 PF02682 Carboxyltransferase domain, subdomain C and D AVL55_RS11555 PF03746 LamB/YcsF family AVL55_RS11560 PF17783 CvfB-like winged helix domain AVL55_RS11560 PF13509 S1 domain AVL55_RS11565 PF02566 OsmC-like protein AVL55_RS11570 PF13533 Biotin-lipoyl like AVL55_RS11575 PF00873 AcrB/AcrD/AcrF family AVL55_RS11580 PF00873 AcrB/AcrD/AcrF family AVL55_RS11595 PF00155 Aminotransferase class I and II AVL55_RS11605 PF01966 HD domain AVL55_RS11605 PF13286 Phosphohydrolase-associated domain AVL55_RS11610 PF00174 Oxidoreductase molybdopterin binding domain AVL55_RS11615 PF01794 Ferric reductase like transmembrane component AVL55_RS11630 PF02810 SEC-C motif AVL55_RS11635 PF00107 Zinc-binding dehydrogenase AVL55_RS11635 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_RS11645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_RS11645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_RS11645 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_RS11655 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS11655 PF00593 TonB dependent receptor AVL55_RS11675 PF06969 HemN C-terminal domain AVL55_RS11675 PF04055 Radical SAM superfamily AVL55_RS11680 PF03459 TOBE domain AVL55_RS11680 PF00005 ABC transporter AVL55_RS11685 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_RS11695 PF02391 MoaE protein AVL55_RS11700 PF02597 ThiS family AVL55_RS11705 PF01967 MoaC family AVL55_RS11710 PF00994 Probable molybdopterin binding domain AVL55_RS11715 PF00899 ThiF family AVL55_RS11725 PF02423 Ornithine cyclodeaminase/mu-crystallin family AVL55_RS11730 PF00155 Aminotransferase class I and II AVL55_RS11735 PF01037 Lrp/AsnC ligand binding domain AVL55_RS11750 PF16325 Peptidase family U32 C-terminal domain AVL55_RS11750 PF01136 Peptidase family U32 AVL55_RS11755 PF00037 4Fe-4S binding domain AVL55_RS11760 PF00155 Aminotransferase class I and II AVL55_RS11765 PF03435 Saccharopine dehydrogenase NADP binding domain AVL55_RS11770 PF00155 Aminotransferase class I and II AVL55_RS11790 PF08267 Cobalamin-independent synthase, N-terminal domain AVL55_RS11790 PF01717 Cobalamin-independent synthase, Catalytic domain AVL55_RS11795 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS11795 PF00593 TonB dependent receptor AVL55_RS11805 PF00892 EamA-like transporter family AVL55_RS11840 PF13538 UvrD-like helicase C-terminal domain AVL55_RS11845 PF12705 PD-(D/E)XK nuclease superfamily AVL55_RS11845 PF00580 UvrD/REP helicase N-terminal domain AVL55_RS11845 PF13361 UvrD-like helicase C-terminal domain AVL55_RS11850 PF17946 RecC C-terminal domain AVL55_RS11895 PF13538 UvrD-like helicase C-terminal domain AVL55_RS11895 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AVL55_RS11895 PF14490 Helix-hairpin-helix containing domain AVL55_RS11925 PF00501 AMP-binding enzyme AVL55_RS11935 PF00563 EAL domain AVL55_RS11935 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS11935 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS11940 PF17770 Ribonuclease J C-terminal domain AVL55_RS11940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AVL55_RS11940 PF12706 Beta-lactamase superfamily domain AVL55_RS11955 PF03466 LysR substrate binding domain AVL55_RS11955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS11970 PF01022 Bacterial regulatory protein, arsR family AVL55_RS11980 PF03466 LysR substrate binding domain AVL55_RS11980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS11990 PF02954 Bacterial regulatory protein, Fis family AVL55_RS11990 PF00072 Response regulator receiver domain AVL55_RS11990 PF00158 Sigma-54 interaction domain AVL55_RS12000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS12000 PF08446 PAS fold AVL55_RS12000 PF00360 Phytochrome region AVL55_RS12000 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS12000 PF01590 GAF domain AVL55_RS12005 PF00072 Response regulator receiver domain AVL55_RS12010 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS12010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS12010 PF00072 Response regulator receiver domain AVL55_RS12010 PF09308 LuxQ, periplasmic AVL55_RS12055 PF07023 Protein of unknown function (DUF1315) AVL55_RS12065 PF01235 Sodium:alanine symporter family AVL55_RS12070 PF18027 Cytosolic carboxypeptidase N-terminal domain AVL55_RS12070 PF00246 Zinc carboxypeptidase AVL55_RS12075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_RS12075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVL55_RS12085 PF01641 SelR domain AVL55_RS12090 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVL55_RS12090 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AVL55_RS12095 PF00128 Alpha amylase, catalytic domain AVL55_RS12095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVL55_RS12100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AVL55_RS12100 PF00128 Alpha amylase, catalytic domain AVL55_RS12100 PF02806 Alpha amylase, C-terminal all-beta domain AVL55_RS12105 PF02446 4-alpha-glucanotransferase AVL55_RS12110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AVL55_RS12110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_RS12115 PF01263 Aldose 1-epimerase AVL55_RS12120 PF01081 KDPG and KHG aldolase AVL55_RS12125 PF02685 Glucokinase AVL55_RS12130 PF00920 Dehydratase family AVL55_RS12135 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AVL55_RS12140 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AVL55_RS12140 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AVL55_RS12145 PF01380 SIS domain AVL55_RS12145 PF01418 Helix-turn-helix domain, rpiR family AVL55_RS12150 PF00224 Pyruvate kinase, barrel domain AVL55_RS12150 PF02887 Pyruvate kinase, alpha/beta domain AVL55_RS12155 PF01048 Phosphorylase superfamily AVL55_RS12175 PF04972 BON domain AVL55_RS12200 PF09347 Domain of unknown function (DUF1989) AVL55_RS12210 PF00356 Bacterial regulatory proteins, lacI family AVL55_RS12215 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS12215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS12215 PF00672 HAMP domain AVL55_RS12215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL55_RS12215 PF01627 Hpt domain AVL55_RS12215 PF00072 Response regulator receiver domain AVL55_RS12230 PF04231 Endonuclease I AVL55_RS12235 PF11838 ERAP1-like C-terminal domain AVL55_RS12235 PF01433 Peptidase family M1 domain AVL55_RS12250 PF03466 LysR substrate binding domain AVL55_RS12250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS12255 PF01965 DJ-1/PfpI family AVL55_RS12260 PF00465 Iron-containing alcohol dehydrogenase AVL55_RS12265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_RS12275 PF00881 Nitroreductase family AVL55_RS12280 PF00199 Catalase AVL55_RS12280 PF06628 Catalase-related immune-responsive AVL55_RS12305 PF00403 Heavy-metal-associated domain AVL55_RS12305 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS12305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL55_RS12310 PF03203 MerC mercury resistance protein AVL55_RS12315 PF00403 Heavy-metal-associated domain AVL55_RS12320 PF02411 MerT mercuric transport protein AVL55_RS12325 PF09278 MerR, DNA binding AVL55_RS12325 PF00376 MerR family regulatory protein AVL55_RS12345 PF01252 Signal peptidase (SPase) II AVL55_RS12355 PF13411 MerR HTH family regulatory protein AVL55_RS12400 PF13495 Phage integrase, N-terminal SAM-like domain AVL55_RS12400 PF00589 Phage integrase family AVL55_RS12415 PF00939 Sodium:sulfate symporter transmembrane region AVL55_RS12420 PF00692 dUTPase AVL55_RS12425 PF10609 NUBPL iron-transfer P-loop NTPase AVL55_RS12430 PF01588 Putative tRNA binding domain AVL55_RS12430 PF09334 tRNA synthetases class I (M) AVL55_RS12430 PF08264 Anticodon-binding domain of tRNA AVL55_RS12435 PF00924 Mechanosensitive ion channel AVL55_RS12435 PF05552 Conserved TM helix AVL55_RS12440 PF08241 Methyltransferase domain AVL55_RS12445 PF00753 Metallo-beta-lactamase superfamily AVL55_RS12445 PF16123 Hydroxyacylglutathione hydrolase C-terminus AVL55_RS12450 PF01464 Transglycosylase SLT domain AVL55_RS12450 PF01476 LysM domain AVL55_RS12460 PF01406 tRNA synthetases class I (C) catalytic domain AVL55_RS12460 PF09190 DALR domain AVL55_RS12465 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AVL55_RS12470 PF00149 Calcineurin-like phosphoesterase AVL55_RS12475 PF00245 Alkaline phosphatase AVL55_RS12480 PF00245 Alkaline phosphatase AVL55_RS12495 PF01145 SPFH domain / Band 7 family AVL55_RS12495 PF15975 Flotillin AVL55_RS12500 PF00128 Alpha amylase, catalytic domain AVL55_RS12505 PF01638 HxlR-like helix-turn-helix AVL55_RS12510 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_RS12510 PF00107 Zinc-binding dehydrogenase AVL55_RS12515 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_RS12515 PF00107 Zinc-binding dehydrogenase AVL55_RS12520 PF03466 LysR substrate binding domain AVL55_RS12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS12535 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AVL55_RS12545 PF00156 Phosphoribosyl transferase domain AVL55_RS12550 PF02674 Colicin V production protein AVL55_RS12555 PF05036 Sporulation related domain AVL55_RS12560 PF08245 Mur ligase middle domain AVL55_RS12560 PF02875 Mur ligase family, glutamate ligase domain AVL55_RS12565 PF17848 Acetyl-coA carboxylase zinc finger domain AVL55_RS12565 PF01039 Carboxyl transferase domain AVL55_RS12575 PF01416 tRNA pseudouridine synthase AVL55_RS12585 PF02774 Semialdehyde dehydrogenase, dimerisation domain AVL55_RS12585 PF01118 Semialdehyde dehydrogenase, NAD binding domain AVL55_RS12590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL55_RS12590 PF11890 Domain of unknown function (DUF3410) AVL55_RS12590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL55_RS12595 PF00596 Class II Aldolase and Adducin N-terminal domain AVL55_RS12605 PF00561 alpha/beta hydrolase fold AVL55_RS12630 PF13358 DDE superfamily endonuclease AVL55_RS12645 PF00144 Beta-lactamase AVL55_RS12650 PF00109 Beta-ketoacyl synthase, N-terminal domain AVL55_RS12650 PF02801 Beta-ketoacyl synthase, C-terminal domain AVL55_RS12655 PF01266 FAD dependent oxidoreductase AVL55_RS12655 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AVL55_RS12705 PF00005 ABC transporter AVL55_RS12715 PF07683 Cobalamin synthesis protein cobW C-terminal domain AVL55_RS12715 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVL55_RS12720 PF12833 Helix-turn-helix domain AVL55_RS12720 PF02805 Metal binding domain of Ada AVL55_RS12725 PF00857 Isochorismatase family AVL55_RS12735 PF02667 Short chain fatty acid transporter AVL55_RS12740 PF01627 Hpt domain AVL55_RS12740 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS12740 PF00072 Response regulator receiver domain AVL55_RS12740 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL55_RS12740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS12740 PF00672 HAMP domain AVL55_RS12745 PF02627 Carboxymuconolactone decarboxylase family AVL55_RS12750 PF05193 Peptidase M16 inactive domain AVL55_RS12750 PF00675 Insulinase (Peptidase family M16) AVL55_RS12765 PF04315 Elongation factor P hydroxylase AVL55_RS12790 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_RS12790 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS12795 PF00378 Enoyl-CoA hydratase/isomerase AVL55_RS12800 PF00440 Bacterial regulatory proteins, tetR family AVL55_RS12800 PF02909 Tetracyclin repressor-like, C-terminal domain AVL55_RS12805 PF00732 GMC oxidoreductase AVL55_RS12805 PF05199 GMC oxidoreductase AVL55_RS12815 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AVL55_RS12815 PF06974 Protein of unknown function (DUF1298) AVL55_RS12820 PF00440 Bacterial regulatory proteins, tetR family AVL55_RS12820 PF08361 MAATS-type transcriptional repressor, C-terminal region AVL55_RS12825 PF04286 Protein of unknown function (DUF445) AVL55_RS12850 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AVL55_RS12850 PF00326 Prolyl oligopeptidase family AVL55_RS12855 PF07840 FadR C-terminal domain AVL55_RS12855 PF00392 Bacterial regulatory proteins, gntR family AVL55_RS12860 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AVL55_RS12865 PF02600 Disulfide bond formation protein DsbB AVL55_RS12870 PF13302 Acetyltransferase (GNAT) domain AVL55_RS12875 PF03692 Putative zinc- or iron-chelating domain AVL55_RS12880 PF01557 Fumarylacetoacetate (FAA) hydrolase family AVL55_RS12890 PF05166 YcgL domain AVL55_RS12895 PF00570 HRDC domain AVL55_RS12895 PF01612 3'-5' exonuclease AVL55_RS12900 PF13193 AMP-binding enzyme C-terminal domain AVL55_RS12900 PF00501 AMP-binding enzyme AVL55_RS12905 PF12697 Alpha/beta hydrolase family AVL55_RS12920 PF00814 Glycoprotease family AVL55_RS12925 PF06733 DEAD_2 AVL55_RS12925 PF13307 Helicase C-terminal domain AVL55_RS12975 PF00128 Alpha amylase, catalytic domain AVL55_RS13010 PF01634 ATP phosphoribosyltransferase AVL55_RS13010 PF08029 HisG, C-terminal domain AVL55_RS13015 PF00815 Histidinol dehydrogenase AVL55_RS13020 PF00155 Aminotransferase class I and II AVL55_RS13025 PF00475 Imidazoleglycerol-phosphate dehydratase AVL55_RS13030 PF00117 Glutamine amidotransferase class-I AVL55_RS13035 PF00977 Histidine biosynthesis protein AVL55_RS13040 PF00977 Histidine biosynthesis protein AVL55_RS13045 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AVL55_RS13045 PF01502 Phosphoribosyl-AMP cyclohydrolase AVL55_RS13050 PF01226 Formate/nitrite transporter AVL55_RS13055 PF00675 Insulinase (Peptidase family M16) AVL55_RS13055 PF05193 Peptidase M16 inactive domain AVL55_RS13060 PF10502 Signal peptidase, peptidase S26 AVL55_RS13065 PF00593 TonB dependent receptor AVL55_RS13065 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS13080 PF05191 Adenylate kinase, active site lid AVL55_RS13085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS13085 PF00183 Hsp90 protein AVL55_RS13090 PF02132 RecR protein AVL55_RS13090 PF13662 Toprim domain AVL55_RS13105 PF00175 Oxidoreductase NAD-binding domain AVL55_RS13105 PF00970 Oxidoreductase FAD-binding domain AVL55_RS13110 PF02575 YbaB/EbfC DNA-binding family AVL55_RS13115 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AVL55_RS13115 PF12169 DNA polymerase III subunits gamma and tau domain III AVL55_RS13115 PF12170 DNA polymerase III tau subunit V interacting with alpha AVL55_RS13120 PF00156 Phosphoribosyl transferase domain AVL55_RS13130 PF05114 Protein of unknown function (DUF692) AVL55_RS13155 PF00005 ABC transporter AVL55_RS13195 PF01066 CDP-alcohol phosphatidyltransferase AVL55_RS13215 PF01565 FAD binding domain AVL55_RS13215 PF09330 D-lactate dehydrogenase, membrane binding AVL55_RS13220 PF02652 L-lactate permease AVL55_RS13225 PF03466 LysR substrate binding domain AVL55_RS13225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS13240 PF10431 C-terminal, D2-small domain, of ClpB protein AVL55_RS13240 PF07724 AAA domain (Cdc48 subfamily) AVL55_RS13240 PF02861 Clp amino terminal domain, pathogenicity island component AVL55_RS13240 PF17871 AAA lid domain AVL55_RS13240 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_RS13245 PF02578 Multi-copper polyphenol oxidoreductase laccase AVL55_RS13250 PF01479 S4 domain AVL55_RS13250 PF00849 RNA pseudouridylate synthase AVL55_RS13255 PF13525 Outer membrane lipoprotein AVL55_RS13265 PF04542 Sigma-70 region 2 AVL55_RS13265 PF04545 Sigma-70, region 4 AVL55_RS13280 PF00106 short chain dehydrogenase AVL55_RS13300 PF13677 Membrane MotB of proton-channel complex MotA/MotB AVL55_RS13300 PF00691 OmpA family AVL55_RS13305 PF01618 MotA/TolQ/ExbB proton channel family AVL55_RS13310 PF02609 Exonuclease VII small subunit AVL55_RS13315 PF00348 Polyprenyl synthetase AVL55_RS13320 PF02779 Transketolase, pyrimidine binding domain AVL55_RS13320 PF02780 Transketolase, C-terminal domain AVL55_RS13320 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AVL55_RS13325 PF04608 Phosphatidylglycerophosphatase A AVL55_RS13330 PF00586 AIR synthase related protein, N-terminal domain AVL55_RS13330 PF02769 AIR synthase related protein, C-terminal domain AVL55_RS13335 PF01029 NusB family AVL55_RS13340 PF00885 6,7-dimethyl-8-ribityllumazine synthase AVL55_RS13345 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AVL55_RS13345 PF00925 GTP cyclohydrolase II AVL55_RS13350 PF00677 Lumazine binding domain AVL55_RS13355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AVL55_RS13355 PF01872 RibD C-terminal domain AVL55_RS13360 PF03477 ATP cone domain AVL55_RS13365 PF00464 Serine hydroxymethyltransferase AVL55_RS13370 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AVL55_RS13370 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_RS13375 PF00005 ABC transporter AVL55_RS13375 PF12848 ABC transporter AVL55_RS13385 PF18073 Rubredoxin metal binding domain AVL55_RS13395 PF18429 Domain of unknown function (DUF5609) AVL55_RS13405 PF01026 TatD related DNase AVL55_RS13410 PF01243 Pyridoxamine 5'-phosphate oxidase AVL55_RS13410 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AVL55_RS13415 PF07650 KH domain AVL55_RS13415 PF01926 50S ribosome-binding GTPase AVL55_RS13420 PF14622 Ribonuclease-III-like AVL55_RS13420 PF00035 Double-stranded RNA binding motif AVL55_RS13425 PF10502 Signal peptidase, peptidase S26 AVL55_RS13430 PF00679 Elongation factor G C-terminus AVL55_RS13430 PF00009 Elongation factor Tu GTP binding domain AVL55_RS13430 PF03144 Elongation factor Tu domain 2 AVL55_RS13430 PF06421 GTP-binding protein LepA C-terminus AVL55_RS13440 PF17188 MucB/RseB C-terminal domain AVL55_RS13440 PF03888 MucB/RseB N-terminal domain AVL55_RS13450 PF04542 Sigma-70 region 2 AVL55_RS13450 PF08281 Sigma-70, region 4 AVL55_RS13455 PF02910 Fumarate reductase flavoprotein C-term AVL55_RS13455 PF00890 FAD binding domain AVL55_RS13470 PF03937 Flavinator of succinate dehydrogenase AVL55_RS13480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL55_RS13485 PF00543 Nitrogen regulatory protein P-II AVL55_RS13490 PF02540 NAD synthase AVL55_RS13525 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor AVL55_RS13525 PF07963 Prokaryotic N-terminal methylation motif AVL55_RS13550 PF02401 LytB protein AVL55_RS13555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL55_RS13560 PF01252 Signal peptidase (SPase) II AVL55_RS13565 PF00133 tRNA synthetases class I (I, L, M and V) AVL55_RS13565 PF06827 Zinc finger found in FPG and IleRS AVL55_RS13565 PF08264 Anticodon-binding domain of tRNA AVL55_RS13570 PF06574 FAD synthetase AVL55_RS13570 PF01687 Riboflavin kinase AVL55_RS13575 PF03023 Lipid II flippase MurJ AVL55_RS13580 PF01649 Ribosomal protein S20 AVL55_RS13585 PF00106 short chain dehydrogenase AVL55_RS13595 PF00106 short chain dehydrogenase AVL55_RS13600 PF01758 Sodium Bile acid symporter family AVL55_RS13620 PF01546 Peptidase family M20/M25/M40 AVL55_RS13620 PF07687 Peptidase dimerisation domain AVL55_RS13625 PF13145 PPIC-type PPIASE domain AVL55_RS13630 PF00216 Bacterial DNA-binding protein AVL55_RS13635 PF02190 ATP-dependent protease La (LON) substrate-binding domain AVL55_RS13635 PF05362 Lon protease (S16) C-terminal proteolytic domain AVL55_RS13635 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_RS13640 PF07724 AAA domain (Cdc48 subfamily) AVL55_RS13640 PF10431 C-terminal, D2-small domain, of ClpB protein AVL55_RS13640 PF06689 ClpX C4-type zinc finger AVL55_RS13645 PF00574 Clp protease AVL55_RS13650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL55_RS13650 PF05697 Bacterial trigger factor protein (TF) AVL55_RS13650 PF05698 Bacterial trigger factor protein (TF) C-terminus AVL55_RS13685 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AVL55_RS13685 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AVL55_RS13695 PF01980 tRNA-methyltransferase O AVL55_RS13695 PF18389 TrmO C-terminal domain AVL55_RS13700 PF03129 Anticodon binding domain AVL55_RS13700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AVL55_RS13705 PF12706 Beta-lactamase superfamily domain AVL55_RS13705 PF00753 Metallo-beta-lactamase superfamily AVL55_RS13710 PF02253 Phospholipase A1 AVL55_RS13715 PF00850 Histone deacetylase domain AVL55_RS13720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS13720 PF00672 HAMP domain AVL55_RS13720 PF02743 Cache domain AVL55_RS13725 PF00117 Glutamine amidotransferase class-I AVL55_RS13725 PF00958 GMP synthase C terminal domain AVL55_RS13725 PF02540 NAD synthase AVL55_RS13730 PF00478 IMP dehydrogenase / GMP reductase domain AVL55_RS13730 PF00571 CBS domain AVL55_RS13735 PF13742 OB-fold nucleic acid binding domain AVL55_RS13735 PF02601 Exonuclease VII, large subunit AVL55_RS13750 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AVL55_RS13750 PF01926 50S ribosome-binding GTPase AVL55_RS13755 PF13360 PQQ-like domain AVL55_RS13760 PF09976 Tetratricopeptide repeat-like domain AVL55_RS13765 PF13393 Histidyl-tRNA synthetase AVL55_RS13765 PF03129 Anticodon binding domain AVL55_RS13770 PF04551 GcpE protein AVL55_RS13775 PF13464 Domain of unknown function (DUF4115) AVL55_RS13785 PF04055 Radical SAM superfamily AVL55_RS13790 PF00334 Nucleoside diphosphate kinase AVL55_RS13795 PF02657 Fe-S metabolism associated domain AVL55_RS13800 PF01883 Iron-sulfur cluster assembly protein AVL55_RS13805 PF01521 Iron-sulphur cluster biosynthesis AVL55_RS13810 PF00266 Aminotransferase class-V AVL55_RS13815 PF01458 Uncharacterized protein family (UPF0051) AVL55_RS13820 PF00005 ABC transporter AVL55_RS13825 PF01458 Uncharacterized protein family (UPF0051) AVL55_RS13830 PF00266 Aminotransferase class-V AVL55_RS13835 PF02082 Transcriptional regulator AVL55_RS13845 PF06426 Serine acetyltransferase, N-terminal AVL55_RS13845 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_RS13850 PF00588 SpoU rRNA Methylase family AVL55_RS13855 PF00459 Inositol monophosphatase family AVL55_RS13860 PF02355 Protein export membrane protein AVL55_RS13860 PF07549 SecD/SecF GG Motif AVL55_RS13865 PF02355 Protein export membrane protein AVL55_RS13865 PF07549 SecD/SecF GG Motif AVL55_RS13865 PF13721 SecD export protein N-terminal TM region AVL55_RS13870 PF02699 Preprotein translocase subunit AVL55_RS13875 PF01702 Queuine tRNA-ribosyltransferase AVL55_RS13880 PF02547 Queuosine biosynthesis protein AVL55_RS13895 PF04012 PspA/IM30 family AVL55_RS13900 PF07885 Ion channel AVL55_RS13915 PF06693 Protein of unknown function (DUF1190) AVL55_RS13920 PF03738 Glutathionylspermidine synthase preATP-grasp AVL55_RS13935 PF00005 ABC transporter AVL55_RS13950 PF04960 Glutaminase AVL55_RS13955 PF00245 Alkaline phosphatase AVL55_RS13960 PF00072 Response regulator receiver domain AVL55_RS13965 PF00463 Isocitrate lyase family AVL55_RS13970 PF03466 LysR substrate binding domain AVL55_RS13970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS13975 PF01274 Malate synthase AVL55_RS13985 PF01370 NAD dependent epimerase/dehydratase family AVL55_RS14005 PF13180 PDZ domain AVL55_RS14020 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AVL55_RS14020 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_RS14020 PF14602 Hexapeptide repeat of succinyl-transferase AVL55_RS14040 PF00534 Glycosyl transferases group 1 AVL55_RS14040 PF13439 Glycosyltransferase Family 4 AVL55_RS14055 PF00733 Asparagine synthase AVL55_RS14055 PF13537 Glutamine amidotransferase domain AVL55_RS14070 PF01501 Glycosyl transferase family 8 AVL55_RS14070 PF00535 Glycosyl transferase family 2 AVL55_RS14085 PF04230 Polysaccharide pyruvyl transferase AVL55_RS14120 PF13439 Glycosyltransferase Family 4 AVL55_RS14120 PF00534 Glycosyl transferases group 1 AVL55_RS14130 PF01522 Polysaccharide deacetylase AVL55_RS14135 PF02397 Bacterial sugar transferase AVL55_RS14150 PF13614 AAA domain AVL55_RS14160 PF01471 Putative peptidoglycan binding domain AVL55_RS14160 PF13401 AAA domain AVL55_RS14165 PF01541 GIY-YIG catalytic domain AVL55_RS14175 PF08335 GlnD PII-uridylyltransferase AVL55_RS14175 PF03710 Glutamate-ammonia ligase adenylyltransferase AVL55_RS14185 PF03279 Bacterial lipid A biosynthesis acyltransferase AVL55_RS14200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_RS14200 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_RS14200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AVL55_RS14200 PF09317 Domain of unknown function (DUF1974) AVL55_RS14205 PF13808 DDE_Tnp_1-associated AVL55_RS14205 PF01609 Transposase DDE domain AVL55_RS14220 PF13186 Iron-sulfur cluster-binding domain AVL55_RS14220 PF04055 Radical SAM superfamily AVL55_RS14225 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AVL55_RS14230 PF03070 TENA/THI-4/PQQC family AVL55_RS14235 PF12706 Beta-lactamase superfamily domain AVL55_RS14240 PF00883 Cytosol aminopeptidase family, catalytic domain AVL55_RS14240 PF02789 Cytosol aminopeptidase family, N-terminal domain AVL55_RS14250 PF00005 ABC transporter AVL55_RS14270 PF01011 PQQ enzyme repeat AVL55_RS14270 PF13360 PQQ-like domain AVL55_RS14275 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AVL55_RS14275 PF13360 PQQ-like domain AVL55_RS14280 PF03547 Membrane transport protein AVL55_RS14290 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS14295 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AVL55_RS14295 PF05221 S-adenosyl-L-homocysteine hydrolase AVL55_RS14300 PF01321 Creatinase/Prolidase N-terminal domain AVL55_RS14300 PF00557 Metallopeptidase family M24 AVL55_RS14305 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AVL55_RS14325 PF00892 EamA-like transporter family AVL55_RS14330 PF00230 Major intrinsic protein AVL55_RS14365 PF00593 TonB dependent receptor AVL55_RS14365 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS14370 PF01594 AI-2E family transporter AVL55_RS14375 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS14375 PF00072 Response regulator receiver domain AVL55_RS14380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL55_RS14380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL55_RS14410 PF00158 Sigma-54 interaction domain AVL55_RS14410 PF01590 GAF domain AVL55_RS14415 PF00970 Oxidoreductase FAD-binding domain AVL55_RS14415 PF00042 Globin AVL55_RS14415 PF00175 Oxidoreductase NAD-binding domain AVL55_RS14420 PF14760 Rnk N-terminus AVL55_RS14420 PF01272 Transcription elongation factor, GreA/GreB, C-term AVL55_RS14430 PF00563 EAL domain AVL55_RS14430 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS14430 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS14435 PF00265 Thymidine kinase AVL55_RS14445 PF00356 Bacterial regulatory proteins, lacI family AVL55_RS14470 PF01926 50S ribosome-binding GTPase AVL55_RS14475 PF00588 SpoU rRNA Methylase family AVL55_RS14475 PF08032 RNA 2'-O ribose methyltransferase substrate binding AVL55_RS14490 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AVL55_RS14490 PF01276 Orn/Lys/Arg decarboxylase, major domain AVL55_RS14490 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AVL55_RS14520 PF00171 Aldehyde dehydrogenase family AVL55_RS14525 PF00732 GMC oxidoreductase AVL55_RS14525 PF05199 GMC oxidoreductase AVL55_RS14565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AVL55_RS14565 PF02770 Acyl-CoA dehydrogenase, middle domain AVL55_RS14565 PF18158 Adaptive response protein AidB N-terminal domain AVL55_RS14595 PF03965 Penicillinase repressor AVL55_RS14615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_RS14625 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_RS14625 PF01799 [2Fe-2S] binding domain AVL55_RS14630 PF00941 FAD binding domain in molybdopterin dehydrogenase AVL55_RS14630 PF03450 CO dehydrogenase flavoprotein C-terminal domain AVL55_RS14635 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_RS14635 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AVL55_RS14640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AVL55_RS14645 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_RS14650 PF12911 N-terminal TM domain of oligopeptide transport permease C AVL55_RS14650 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_RS14655 PF00005 ABC transporter AVL55_RS14655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AVL55_RS14665 PF00106 short chain dehydrogenase AVL55_RS14670 PF01965 DJ-1/PfpI family AVL55_RS14675 PF03631 Virulence factor BrkB AVL55_RS14680 PF07690 Major Facilitator Superfamily AVL55_RS14695 PF00873 AcrB/AcrD/AcrF family AVL55_RS14710 PF00962 Adenosine/AMP deaminase AVL55_RS14725 PF07152 YaeQ protein AVL55_RS14805 PF07690 Major Facilitator Superfamily AVL55_RS14810 PF01432 Peptidase family M3 AVL55_RS14815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS14815 PF03466 LysR substrate binding domain AVL55_RS14830 PF00696 Amino acid kinase family AVL55_RS14830 PF00583 Acetyltransferase (GNAT) family AVL55_RS14835 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AVL55_RS14835 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AVL55_RS14835 PF06827 Zinc finger found in FPG and IleRS AVL55_RS14850 PF09382 RQC domain AVL55_RS14850 PF16124 RecQ zinc-binding AVL55_RS14850 PF00270 DEAD/DEAH box helicase AVL55_RS14850 PF00570 HRDC domain AVL55_RS14850 PF00271 Helicase conserved C-terminal domain AVL55_RS14865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS14865 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL55_RS14865 PF01627 Hpt domain AVL55_RS14865 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS14865 PF00672 HAMP domain AVL55_RS14865 PF00072 Response regulator receiver domain AVL55_RS14895 PF02492 CobW/HypB/UreG, nucleotide-binding domain AVL55_RS14900 PF01730 UreF AVL55_RS14905 PF05194 UreE urease accessory protein, C-terminal domain AVL55_RS14905 PF02814 UreE urease accessory protein, N-terminal domain AVL55_RS14910 PF00449 Urease alpha-subunit, N-terminal domain AVL55_RS14910 PF01979 Amidohydrolase family AVL55_RS14915 PF00699 Urease beta subunit AVL55_RS14920 PF00547 Urease, gamma subunit AVL55_RS14925 PF01774 UreD urease accessory protein AVL55_RS14930 PF00005 ABC transporter AVL55_RS14935 PF00005 ABC transporter AVL55_RS14935 PF12399 Branched-chain amino acid ATP-binding cassette transporter AVL55_RS14945 PF02653 Branched-chain amino acid transport system / permease component AVL55_RS14960 PF00072 Response regulator receiver domain AVL55_RS14960 PF01627 Hpt domain AVL55_RS14960 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS14960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS14965 PF00072 Response regulator receiver domain AVL55_RS14965 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS14970 PF02661 Fic/DOC family AVL55_RS14970 PF12728 Helix-turn-helix domain AVL55_RS14975 PF02347 Glycine cleavage system P-protein AVL55_RS14980 PF01597 Glycine cleavage H-protein AVL55_RS14985 PF01571 Aminomethyltransferase folate-binding domain AVL55_RS14985 PF08669 Glycine cleavage T-protein C-terminal barrel domain AVL55_RS14990 PF03466 LysR substrate binding domain AVL55_RS14990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS15000 PF00557 Metallopeptidase family M24 AVL55_RS15000 PF01321 Creatinase/Prolidase N-terminal domain AVL55_RS15015 PF01494 FAD binding domain AVL55_RS15020 PF01494 FAD binding domain AVL55_RS15025 PF00557 Metallopeptidase family M24 AVL55_RS15025 PF05195 Aminopeptidase P, N-terminal domain AVL55_RS15030 PF03695 Uncharacterised protein family (UPF0149) AVL55_RS15040 PF00294 pfkB family carbohydrate kinase AVL55_RS15045 PF01156 Inosine-uridine preferring nucleoside hydrolase AVL55_RS15050 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS15050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS15060 PF01812 5-formyltetrahydrofolate cyclo-ligase family AVL55_RS15065 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AVL55_RS15070 PF01842 ACT domain AVL55_RS15070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL55_RS15070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL55_RS15090 PF06945 Protein of unknown function (DUF1289) AVL55_RS15100 PF00873 AcrB/AcrD/AcrF family AVL55_RS15105 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL55_RS15110 PF03466 LysR substrate binding domain AVL55_RS15110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS15115 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL55_RS15115 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS15120 PF02817 e3 binding domain AVL55_RS15120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AVL55_RS15120 PF00364 Biotin-requiring enzyme AVL55_RS15125 PF17831 Pyruvate dehydrogenase E1 component middle domain AVL55_RS15125 PF00456 Transketolase, thiamine diphosphate binding domain AVL55_RS15130 PF07729 FCD domain AVL55_RS15130 PF00392 Bacterial regulatory proteins, gntR family AVL55_RS15140 PF01510 N-acetylmuramoyl-L-alanine amidase AVL55_RS15150 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AVL55_RS15150 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AVL55_RS15160 PF00482 Type II secretion system (T2SS), protein F AVL55_RS15165 PF06750 Bacterial Peptidase A24 N-terminal domain AVL55_RS15165 PF01478 Type IV leader peptidase family AVL55_RS15170 PF01121 Dephospho-CoA kinase AVL55_RS15175 PF07072 Cell division protein AVL55_RS15180 PF03884 DNA gyrase inhibitor YacG AVL55_RS15185 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AVL55_RS15190 PF00293 NUDIX domain AVL55_RS15195 PF02810 SEC-C motif AVL55_RS15195 PF07517 SecA DEAD-like domain AVL55_RS15195 PF01043 SecA preprotein cross-linking domain AVL55_RS15195 PF07516 SecA Wing and Scaffold domain AVL55_RS15200 PF01551 Peptidase family M23 AVL55_RS15200 PF08525 Opacity-associated protein A N-terminal motif AVL55_RS15200 PF01476 LysM domain AVL55_RS15205 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AVL55_RS15210 PF00091 Tubulin/FtsZ family, GTPase domain AVL55_RS15210 PF12327 FtsZ family, C-terminal domain AVL55_RS15215 PF02491 SHS2 domain inserted in FTSA AVL55_RS15220 PF08478 POTRA domain, FtsQ-type AVL55_RS15220 PF03799 Cell division protein FtsQ AVL55_RS15225 PF01820 D-ala D-ala ligase N-terminus AVL55_RS15225 PF07478 D-ala D-ala ligase C-terminus AVL55_RS15230 PF01225 Mur ligase family, catalytic domain AVL55_RS15230 PF02875 Mur ligase family, glutamate ligase domain AVL55_RS15230 PF08245 Mur ligase middle domain AVL55_RS15235 PF03033 Glycosyltransferase family 28 N-terminal domain AVL55_RS15235 PF04101 Glycosyltransferase family 28 C-terminal domain AVL55_RS15240 PF01098 Cell cycle protein AVL55_RS15245 PF02875 Mur ligase family, glutamate ligase domain AVL55_RS15245 PF08245 Mur ligase middle domain AVL55_RS15250 PF00953 Glycosyl transferase family 4 AVL55_RS15250 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AVL55_RS15255 PF08245 Mur ligase middle domain AVL55_RS15255 PF02875 Mur ligase family, glutamate ligase domain AVL55_RS15255 PF01225 Mur ligase family, catalytic domain AVL55_RS15260 PF08245 Mur ligase middle domain AVL55_RS15260 PF01225 Mur ligase family, catalytic domain AVL55_RS15260 PF02875 Mur ligase family, glutamate ligase domain AVL55_RS15265 PF00905 Penicillin binding protein transpeptidase domain AVL55_RS15265 PF03717 Penicillin-binding Protein dimerisation domain AVL55_RS15270 PF04999 Cell division protein FtsL AVL55_RS15275 PF01795 MraW methylase family AVL55_RS15280 PF02381 MraZ protein, putative antitoxin-like AVL55_RS15300 PF00873 AcrB/AcrD/AcrF family AVL55_RS15305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AVL55_RS15305 PF00529 HlyD membrane-fusion protein of T1SS AVL55_RS15325 PF08534 Redoxin AVL55_RS15325 PF00462 Glutaredoxin AVL55_RS15330 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AVL55_RS15340 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS15350 PF02954 Bacterial regulatory protein, Fis family AVL55_RS15350 PF00158 Sigma-54 interaction domain AVL55_RS15350 PF00072 Response regulator receiver domain AVL55_RS15355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS15355 PF00072 Response regulator receiver domain AVL55_RS15355 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS15355 PF09456 RcsC Alpha-Beta-Loop (ABL) AVL55_RS15360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AVL55_RS15360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AVL55_RS15375 PF05552 Conserved TM helix AVL55_RS15375 PF00924 Mechanosensitive ion channel AVL55_RS15380 PF04452 RNA methyltransferase AVL55_RS15385 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AVL55_RS15385 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AVL55_RS15390 PF02622 Uncharacterized ACR, COG1678 AVL55_RS15395 PF03652 Holliday junction resolvase AVL55_RS15405 PF00437 Type II/IV secretion system protein AVL55_RS15410 PF00437 Type II/IV secretion system protein AVL55_RS15415 PF01168 Alanine racemase, N-terminal domain AVL55_RS15420 PF03807 NADP oxidoreductase coenzyme F420-dependent AVL55_RS15420 PF14748 Pyrroline-5-carboxylate reductase dimerisation AVL55_RS15425 PF02325 YGGT family AVL55_RS15435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_RS15435 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS15455 PF00080 Copper/zinc superoxide dismutase (SODC) AVL55_RS15460 PF02566 OsmC-like protein AVL55_RS15465 PF01625 Peptide methionine sulfoxide reductase AVL55_RS15475 PF03591 AzlC protein AVL55_RS15485 PF07690 Major Facilitator Superfamily AVL55_RS15490 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AVL55_RS15495 PF03883 Peroxide stress protein YaaA AVL55_RS15505 PF00923 Transaldolase/Fructose-6-phosphate aldolase AVL55_RS15510 PF00342 Phosphoglucose isomerase AVL55_RS15515 PF03167 Uracil DNA glycosylase superfamily AVL55_RS15520 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_RS15520 PF14821 Threonine synthase N terminus AVL55_RS15525 PF00288 GHMP kinases N terminal domain AVL55_RS15525 PF08544 GHMP kinases C terminal AVL55_RS15530 PF13840 ACT domain AVL55_RS15530 PF03447 Homoserine dehydrogenase, NAD binding domain AVL55_RS15530 PF00696 Amino acid kinase family AVL55_RS15530 PF00742 Homoserine dehydrogenase AVL55_RS15530 PF01842 ACT domain AVL55_RS15535 PF17755 UvrA DNA-binding domain AVL55_RS15540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS15540 PF03466 LysR substrate binding domain AVL55_RS15545 PF08240 Alcohol dehydrogenase GroES-like domain AVL55_RS15545 PF00107 Zinc-binding dehydrogenase AVL55_RS15555 PF01022 Bacterial regulatory protein, arsR family AVL55_RS15565 PF03358 NADPH-dependent FMN reductase AVL55_RS15570 PF01758 Sodium Bile acid symporter family AVL55_RS15575 PF00072 Response regulator receiver domain AVL55_RS15580 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AVL55_RS15585 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS15585 PF00072 Response regulator receiver domain AVL55_RS15590 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS15590 PF08521 Two-component sensor kinase N-terminal AVL55_RS15590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS15610 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_RS15620 PF04116 Fatty acid hydroxylase superfamily AVL55_RS15640 PF03435 Saccharopine dehydrogenase NADP binding domain AVL55_RS15640 PF16653 Saccharopine dehydrogenase C-terminal domain AVL55_RS15645 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AVL55_RS15660 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AVL55_RS15665 PF04348 LppC putative lipoprotein AVL55_RS15670 PF02021 Uncharacterised protein family UPF0102 AVL55_RS15675 PF00534 Glycosyl transferases group 1 AVL55_RS15680 PF13580 SIS domain AVL55_RS15685 PF04972 BON domain AVL55_RS15690 PF07690 Major Facilitator Superfamily AVL55_RS15700 PF00893 Small Multidrug Resistance protein AVL55_RS15705 PF07730 Histidine kinase AVL55_RS15710 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS15710 PF00072 Response regulator receiver domain AVL55_RS15725 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS15725 PF00593 TonB dependent receptor AVL55_RS15740 PF00285 Citrate synthase, C-terminal domain AVL55_RS15745 PF00330 Aconitase family (aconitate hydratase) AVL55_RS15745 PF00694 Aconitase C-terminal domain AVL55_RS15750 PF04303 PrpF protein AVL55_RS15755 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS15760 PF00474 Sodium:solute symporter family AVL55_RS15775 PF01627 Hpt domain AVL55_RS15775 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS15775 PF00072 Response regulator receiver domain AVL55_RS15775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS15775 PF18415 Histidine kinase receptor ArcB trans-membrane domain AVL55_RS15775 PF00989 PAS fold AVL55_RS15785 PF01645 Conserved region in glutamate synthase AVL55_RS15785 PF00310 Glutamine amidotransferases class-II AVL55_RS15785 PF04898 Glutamate synthase central domain AVL55_RS15785 PF01493 GXGXG motif AVL55_RS15790 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS15790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AVL55_RS15805 PF01048 Phosphorylase superfamily AVL55_RS15810 PF03186 CobD/Cbib protein AVL55_RS15815 PF01497 Periplasmic binding protein AVL55_RS15820 PF00581 Rhodanese-like domain AVL55_RS15835 PF01266 FAD dependent oxidoreductase AVL55_RS15840 PF07237 Protein of unknown function (DUF1428) AVL55_RS15850 PF13006 Insertion element 4 transposase N-terminal AVL55_RS15850 PF01609 Transposase DDE domain AVL55_RS15855 PF00579 tRNA synthetases class I (W and Y) AVL55_RS15860 PF01464 Transglycosylase SLT domain AVL55_RS15860 PF01551 Peptidase family M23 AVL55_RS15860 PF10145 Phage-related minor tail protein AVL55_RS15865 PF03702 Anhydro-N-acetylmuramic acid kinase AVL55_RS15870 PF03600 Citrate transporter AVL55_RS15875 PF07690 Major Facilitator Superfamily AVL55_RS15885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AVL55_RS15895 PF01053 Cys/Met metabolism PLP-dependent enzyme AVL55_RS15900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL55_RS15905 PF13417 Glutathione S-transferase, N-terminal domain AVL55_RS15905 PF00043 Glutathione S-transferase, C-terminal domain AVL55_RS15910 PF01521 Iron-sulphur cluster biosynthesis AVL55_RS15915 PF03976 Polyphosphate kinase 2 (PPK2) AVL55_RS15920 PF03776 Septum formation topological specificity factor MinE AVL55_RS15925 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AVL55_RS15930 PF05209 Septum formation inhibitor MinC, N-terminal domain AVL55_RS15930 PF03775 Septum formation inhibitor MinC, C-terminal domain AVL55_RS15935 PF00206 Lyase AVL55_RS15935 PF10415 Fumarase C C-terminus AVL55_RS15945 PF00127 Copper binding proteins, plastocyanin/azurin family AVL55_RS15965 PF03653 Uncharacterised protein family (UPF0093) AVL55_RS15980 PF01566 Natural resistance-associated macrophage protein AVL55_RS15985 PF00155 Aminotransferase class I and II AVL55_RS15990 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS15990 PF00072 Response regulator receiver domain AVL55_RS15995 PF03144 Elongation factor Tu domain 2 AVL55_RS15995 PF00679 Elongation factor G C-terminus AVL55_RS15995 PF00009 Elongation factor Tu GTP binding domain AVL55_RS16000 PF00120 Glutamine synthetase, catalytic domain AVL55_RS16000 PF03951 Glutamine synthetase, beta-Grasp domain AVL55_RS16010 PF00989 PAS fold AVL55_RS16010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS16010 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS16015 PF00158 Sigma-54 interaction domain AVL55_RS16015 PF00072 Response regulator receiver domain AVL55_RS16015 PF02954 Bacterial regulatory protein, Fis family AVL55_RS16020 PF00072 Response regulator receiver domain AVL55_RS16025 PF01553 Acyltransferase AVL55_RS16030 PF06877 Regulator of ribonuclease activity B AVL55_RS16055 PF00672 HAMP domain AVL55_RS16055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS16055 PF01627 Hpt domain AVL55_RS16055 PF00072 Response regulator receiver domain AVL55_RS16055 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL55_RS16055 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS16060 PF08264 Anticodon-binding domain of tRNA AVL55_RS16060 PF10458 Valyl tRNA synthetase tRNA binding arm AVL55_RS16060 PF00133 tRNA synthetases class I (I, L, M and V) AVL55_RS16065 PF04364 DNA polymerase III chi subunit, HolC AVL55_RS16070 PF02789 Cytosol aminopeptidase family, N-terminal domain AVL55_RS16070 PF00883 Cytosol aminopeptidase family, catalytic domain AVL55_RS16075 PF03739 Lipopolysaccharide export system permease LptF/LptG AVL55_RS16080 PF03739 Lipopolysaccharide export system permease LptF/LptG AVL55_RS16100 PF04542 Sigma-70 region 2 AVL55_RS16100 PF04545 Sigma-70, region 4 AVL55_RS16135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AVL55_RS16135 PF00672 HAMP domain AVL55_RS16135 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS16135 PF01627 Hpt domain AVL55_RS16135 PF00072 Response regulator receiver domain AVL55_RS16135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS16145 PF01590 GAF domain AVL55_RS16145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS16145 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS16145 PF08446 PAS fold AVL55_RS16145 PF00360 Phytochrome region AVL55_RS16150 PF07995 Glucose / Sorbosone dehydrogenase AVL55_RS16160 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS16160 PF00072 Response regulator receiver domain AVL55_RS16165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS16165 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS16165 PF00989 PAS fold AVL55_RS16165 PF11808 Phosphate regulon sensor protein PhoR AVL55_RS16190 PF18766 SWI2/SNF2 ATPase AVL55_RS16190 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AVL55_RS16190 PF12008 Type I restriction and modification enzyme - subunit R C terminal AVL55_RS16200 PF12161 HsdM N-terminal domain AVL55_RS16200 PF02384 N-6 DNA Methylase AVL55_RS16225 PF01693 Caulimovirus viroplasmin AVL55_RS16245 PF02899 Phage integrase, N-terminal SAM-like domain AVL55_RS16245 PF00589 Phage integrase family AVL55_RS16260 PF06114 IrrE N-terminal-like domain AVL55_RS16275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS16275 PF00672 HAMP domain AVL55_RS16275 PF12729 Four helix bundle sensory module for signal transduction AVL55_RS16280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS16280 PF12729 Four helix bundle sensory module for signal transduction AVL55_RS16280 PF00672 HAMP domain AVL55_RS16285 PF00274 Fructose-bisphosphate aldolase class-I AVL55_RS16310 PF00528 Binding-protein-dependent transport system inner membrane component AVL55_RS16315 PF00005 ABC transporter AVL55_RS16315 PF17912 MalK OB fold domain AVL55_RS16320 PF17912 MalK OB fold domain AVL55_RS16320 PF00005 ABC transporter AVL55_RS16320 PF03459 TOBE domain AVL55_RS16325 PF00158 Sigma-54 interaction domain AVL55_RS16325 PF13426 PAS domain AVL55_RS16325 PF02954 Bacterial regulatory protein, Fis family AVL55_RS16330 PF00121 Triosephosphate isomerase AVL55_RS16335 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AVL55_RS16340 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AVL55_RS16345 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AVL55_RS16345 PF01266 FAD dependent oxidoreductase AVL55_RS16350 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AVL55_RS16350 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AVL55_RS16355 PF00005 ABC transporter AVL55_RS16355 PF08402 TOBE domain AVL55_RS16400 PF00072 Response regulator receiver domain AVL55_RS16400 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS16405 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS16405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS16415 PF12801 4Fe-4S binding domain AVL55_RS16415 PF04205 FMN-binding domain AVL55_RS16420 PF00171 Aldehyde dehydrogenase family AVL55_RS16425 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS16425 PF00072 Response regulator receiver domain AVL55_RS16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS16430 PF05231 MASE1 AVL55_RS16430 PF07730 Histidine kinase AVL55_RS16435 PF08447 PAS fold AVL55_RS16435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS16435 PF13426 PAS domain AVL55_RS16445 PF00171 Aldehyde dehydrogenase family AVL55_RS16450 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AVL55_RS16450 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AVL55_RS16455 PF02028 BCCT, betaine/carnitine/choline family transporter AVL55_RS16470 PF00593 TonB dependent receptor AVL55_RS16470 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS16475 PF00149 Calcineurin-like phosphoesterase AVL55_RS16475 PF16656 Purple acid Phosphatase, N-terminal domain AVL55_RS16480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS16480 PF03466 LysR substrate binding domain AVL55_RS16485 PF01070 FMN-dependent dehydrogenase AVL55_RS16490 PF01565 FAD binding domain AVL55_RS16490 PF09330 D-lactate dehydrogenase, membrane binding AVL55_RS16495 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS16500 PF03783 Curli production assembly/transport component CsgG AVL55_RS16525 PF00082 Subtilase family AVL55_RS16530 PF00072 Response regulator receiver domain AVL55_RS16530 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS16535 PF07730 Histidine kinase AVL55_RS16535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS16545 PF00270 DEAD/DEAH box helicase AVL55_RS16545 PF00271 Helicase conserved C-terminal domain AVL55_RS16560 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS16560 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AVL55_RS16560 PF04324 BFD-like [2Fe-2S] binding domain AVL55_RS16560 PF18267 Rubredoxin NAD+ reductase C-terminal domain AVL55_RS16575 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL55_RS16580 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AVL55_RS16580 PF00034 Cytochrome c AVL55_RS16580 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AVL55_RS16595 PF12794 Mechanosensitive ion channel inner membrane domain 1 AVL55_RS16595 PF12795 Mechanosensitive ion channel porin domain AVL55_RS16595 PF00924 Mechanosensitive ion channel AVL55_RS16605 PF00141 Peroxidase AVL55_RS16625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS16625 PF03466 LysR substrate binding domain AVL55_RS16635 PF01925 Sulfite exporter TauE/SafE AVL55_RS16640 PF00155 Aminotransferase class I and II AVL55_RS16645 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS16645 PF02743 Cache domain AVL55_RS16645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS16655 PF00136 DNA polymerase family B AVL55_RS16655 PF03104 DNA polymerase family B, exonuclease domain AVL55_RS16665 PF13193 AMP-binding enzyme C-terminal domain AVL55_RS16665 PF00501 AMP-binding enzyme AVL55_RS16705 PF05958 tRNA (Uracil-5-)-methyltransferase AVL55_RS16710 PF00440 Bacterial regulatory proteins, tetR family AVL55_RS16720 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS16720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL55_RS16730 PF03167 Uracil DNA glycosylase superfamily AVL55_RS16735 PF00563 EAL domain AVL55_RS16735 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS16735 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS16745 PF01507 Phosphoadenosine phosphosulfate reductase family AVL55_RS16750 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AVL55_RS16750 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AVL55_RS16755 PF00175 Oxidoreductase NAD-binding domain AVL55_RS16755 PF00258 Flavodoxin AVL55_RS16755 PF00667 FAD binding domain AVL55_RS16775 PF04024 PspC domain AVL55_RS16780 PF04012 PspA/IM30 family AVL55_RS16790 PF01207 Dihydrouridine synthase (Dus) AVL55_RS16810 PF01389 OmpA-like transmembrane domain AVL55_RS16810 PF00691 OmpA family AVL55_RS16815 PF05362 Lon protease (S16) C-terminal proteolytic domain AVL55_RS16815 PF02190 ATP-dependent protease La (LON) substrate-binding domain AVL55_RS16815 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_RS16820 PF03707 Bacterial signalling protein N terminal repeat AVL55_RS16820 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS16820 PF00563 EAL domain AVL55_RS16825 PF00756 Putative esterase AVL55_RS16830 PF01553 Acyltransferase AVL55_RS16835 PF01553 Acyltransferase AVL55_RS16840 PF00924 Mechanosensitive ion channel AVL55_RS16855 PF01370 NAD dependent epimerase/dehydratase family AVL55_RS16860 PF00209 Sodium:neurotransmitter symporter family AVL55_RS16875 PF01625 Peptide methionine sulfoxide reductase AVL55_RS16890 PF00258 Flavodoxin AVL55_RS16900 PF02472 Biopolymer transport protein ExbD/TolR AVL55_RS16915 PF05175 Methyltransferase small domain AVL55_RS16920 PF13460 NAD(P)H-binding AVL55_RS16925 PF00326 Prolyl oligopeptidase family AVL55_RS16925 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AVL55_RS16930 PF08000 Bacterial PH domain AVL55_RS16935 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS16935 PF08448 PAS fold AVL55_RS16935 PF00563 EAL domain AVL55_RS16940 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_RS16945 PF07969 Amidohydrolase family AVL55_RS16955 PF00753 Metallo-beta-lactamase superfamily AVL55_RS16965 PF13230 Glutamine amidotransferases class-II AVL55_RS16985 PF09905 DNA-binding protein VF530 AVL55_RS16995 PF01204 Trehalase AVL55_RS17000 PF02447 GntP family permease AVL55_RS17010 PF00356 Bacterial regulatory proteins, lacI family AVL55_RS17015 PF00753 Metallo-beta-lactamase superfamily AVL55_RS17015 PF16123 Hydroxyacylglutathione hydrolase C-terminus AVL55_RS17025 PF11798 IMS family HHH motif AVL55_RS17025 PF00817 impB/mucB/samB family AVL55_RS17025 PF11799 impB/mucB/samB family C-terminal domain AVL55_RS17040 PF02424 ApbE family AVL55_RS17045 PF00970 Oxidoreductase FAD-binding domain AVL55_RS17045 PF00111 2Fe-2S iron-sulfur cluster binding domain AVL55_RS17045 PF00175 Oxidoreductase NAD-binding domain AVL55_RS17050 PF02508 Rnf-Nqr subunit, membrane protein AVL55_RS17055 PF02508 Rnf-Nqr subunit, membrane protein AVL55_RS17060 PF04205 FMN-binding domain AVL55_RS17065 PF03116 NQR2, RnfD, RnfE family AVL55_RS17070 PF11973 NQRA C-terminal domain AVL55_RS17070 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AVL55_RS17075 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AVL55_RS17075 PF12241 Trans-2-enoyl-CoA reductase catalytic region AVL55_RS17075 PF07055 Enoyl reductase FAD binding domain AVL55_RS17080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL55_RS17080 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AVL55_RS17085 PF00311 Phosphoenolpyruvate carboxylase AVL55_RS17090 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AVL55_RS17090 PF00056 lactate/malate dehydrogenase, NAD binding domain AVL55_RS17095 PF02863 Arginine repressor, C-terminal domain AVL55_RS17095 PF01316 Arginine repressor, DNA binding domain AVL55_RS17105 PF00593 TonB dependent receptor AVL55_RS17110 PF00593 TonB dependent receptor AVL55_RS17125 PF00485 Phosphoribulokinase / Uridine kinase family AVL55_RS17130 PF07670 Nucleoside recognition AVL55_RS17130 PF07662 Na+ dependent nucleoside transporter C-terminus AVL55_RS17130 PF01773 Na+ dependent nucleoside transporter N-terminus AVL55_RS17145 PF02469 Fasciclin domain AVL55_RS17155 PF00072 Response regulator receiver domain AVL55_RS17155 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS17165 PF00571 CBS domain AVL55_RS17165 PF01380 SIS domain AVL55_RS17170 PF00474 Sodium:solute symporter family AVL55_RS17180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS17180 PF18415 Histidine kinase receptor ArcB trans-membrane domain AVL55_RS17180 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS17190 PF08443 RimK-like ATP-grasp domain AVL55_RS17190 PF18030 RimK PreATP-grasp domain AVL55_RS17200 PF08443 RimK-like ATP-grasp domain AVL55_RS17200 PF18030 RimK PreATP-grasp domain AVL55_RS17210 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS17210 PF00072 Response regulator receiver domain AVL55_RS17215 PF16177 Acetyl-coenzyme A synthetase N-terminus AVL55_RS17215 PF00501 AMP-binding enzyme AVL55_RS17215 PF13193 AMP-binding enzyme C-terminal domain AVL55_RS17235 PF03412 Peptidase C39 family AVL55_RS17235 PF00005 ABC transporter AVL55_RS17235 PF00664 ABC transporter transmembrane region AVL55_RS17240 PF03466 LysR substrate binding domain AVL55_RS17240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS17255 PF01050 Mannose-6-phosphate isomerase AVL55_RS17255 PF00483 Nucleotidyl transferase AVL55_RS17265 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AVL55_RS17265 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AVL55_RS17265 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AVL55_RS17270 PF00535 Glycosyl transferase family 2 AVL55_RS17275 PF16363 GDP-mannose 4,6 dehydratase AVL55_RS17280 PF04321 RmlD substrate binding domain AVL55_RS17285 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AVL55_RS17290 PF00483 Nucleotidyl transferase AVL55_RS17360 PF07836 DmpG-like communication domain AVL55_RS17360 PF00682 HMGL-like AVL55_RS17365 PF02348 Cytidylyltransferase AVL55_RS17415 PF05922 Peptidase inhibitor I9 AVL55_RS17415 PF00082 Subtilase family AVL55_RS17465 PF14307 Glycosyltransferase WbsX AVL55_RS17465 PF05045 Rhamnan synthesis protein F AVL55_RS17480 PF00700 Bacterial flagellin C-terminal helical region AVL55_RS17480 PF07196 Flagellin hook IN motif AVL55_RS17480 PF00669 Bacterial flagellin N-terminal helical region AVL55_RS17485 PF01196 Ribosomal protein L17 AVL55_RS17490 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AVL55_RS17490 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AVL55_RS17490 PF01000 RNA polymerase Rpb3/RpoA insert domain AVL55_RS17495 PF01479 S4 domain AVL55_RS17495 PF00163 Ribosomal protein S4/S9 N-terminal domain AVL55_RS17500 PF00411 Ribosomal protein S11 AVL55_RS17505 PF00416 Ribosomal protein S13/S18 AVL55_RS17510 PF00444 Ribosomal protein L36 AVL55_RS17515 PF00344 SecY translocase AVL55_RS17520 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AVL55_RS17525 PF00327 Ribosomal protein L30p/L7e AVL55_RS17530 PF00333 Ribosomal protein S5, N-terminal domain AVL55_RS17530 PF03719 Ribosomal protein S5, C-terminal domain AVL55_RS17535 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AVL55_RS17540 PF00347 Ribosomal protein L6 AVL55_RS17545 PF00410 Ribosomal protein S8 AVL55_RS17550 PF00253 Ribosomal protein S14p/S29e AVL55_RS17555 PF00281 Ribosomal protein L5 AVL55_RS17555 PF00673 ribosomal L5P family C-terminus AVL55_RS17560 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AVL55_RS17560 PF00467 KOW motif AVL55_RS17565 PF00238 Ribosomal protein L14p/L23e AVL55_RS17575 PF05922 Peptidase inhibitor I9 AVL55_RS17575 PF00082 Subtilase family AVL55_RS17580 PF08032 RNA 2'-O ribose methyltransferase substrate binding AVL55_RS17580 PF00588 SpoU rRNA Methylase family AVL55_RS17585 PF00575 S1 RNA binding domain AVL55_RS17585 PF00773 RNB domain AVL55_RS17585 PF08206 Ribonuclease B OB domain AVL55_RS17585 PF17876 Cold shock domain AVL55_RS17585 PF08461 Ribonuclease R winged-helix domain AVL55_RS17590 PF09423 PhoD-like phosphatase AVL55_RS17590 PF16655 PhoD-like phosphatase, N-terminal domain AVL55_RS17620 PF08238 Sel1 repeat AVL55_RS17630 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AVL55_RS17635 PF00175 Oxidoreductase NAD-binding domain AVL55_RS17640 PF04389 Peptidase family M28 AVL55_RS17650 PF01590 GAF domain AVL55_RS17650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS17650 PF00360 Phytochrome region AVL55_RS17650 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS17650 PF08446 PAS fold AVL55_RS17660 PF01654 Cytochrome bd terminal oxidase subunit I AVL55_RS17665 PF02322 Cytochrome bd terminal oxidase subunit II AVL55_RS17670 PF13404 AsnC-type helix-turn-helix domain AVL55_RS17670 PF01037 Lrp/AsnC ligand binding domain AVL55_RS17680 PF00313 'Cold-shock' DNA-binding domain AVL55_RS17685 PF03109 ABC1 family AVL55_RS17695 PF01209 ubiE/COQ5 methyltransferase family AVL55_RS17705 PF01432 Peptidase family M3 AVL55_RS17710 PF00072 Response regulator receiver domain AVL55_RS17715 PF00158 Sigma-54 interaction domain AVL55_RS17715 PF00072 Response regulator receiver domain AVL55_RS17715 PF02954 Bacterial regulatory protein, Fis family AVL55_RS17725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AVL55_RS17725 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS17730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AVL55_RS17730 PF00384 Molybdopterin oxidoreductase AVL55_RS17730 PF01568 Molydopterin dinucleotide binding domain AVL55_RS17735 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS17735 PF00593 TonB dependent receptor AVL55_RS17745 PF07676 WD40-like Beta Propeller Repeat AVL55_RS17745 PF00326 Prolyl oligopeptidase family AVL55_RS17795 PF00664 ABC transporter transmembrane region AVL55_RS17795 PF03412 Peptidase C39 family AVL55_RS17795 PF00005 ABC transporter AVL55_RS17800 PF00196 Bacterial regulatory proteins, luxR family AVL55_RS17800 PF00072 Response regulator receiver domain AVL55_RS17825 PF07724 AAA domain (Cdc48 subfamily) AVL55_RS17825 PF00004 ATPase family associated with various cellular activities (AAA) AVL55_RS17830 PF00227 Proteasome subunit AVL55_RS17835 PF00313 'Cold-shock' DNA-binding domain AVL55_RS17845 PF05036 Sporulation related domain AVL55_RS17850 PF18074 Primosomal protein N C-terminal domain AVL55_RS17850 PF17764 3′ DNA-binding domain (3′BD) AVL55_RS17850 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AVL55_RS17850 PF00271 Helicase conserved C-terminal domain AVL55_RS17850 PF00270 DEAD/DEAH box helicase AVL55_RS17855 PF01197 Ribosomal protein L31 AVL55_RS17865 PF03949 Malic enzyme, NAD binding domain AVL55_RS17865 PF00390 Malic enzyme, N-terminal domain AVL55_RS17870 PF01340 Met Apo-repressor, MetJ AVL55_RS17875 PF02219 Methylenetetrahydrofolate reductase AVL55_RS17880 PF03631 Virulence factor BrkB AVL55_RS17895 PF00561 alpha/beta hydrolase fold AVL55_RS17900 PF02580 D-Tyr-tRNA(Tyr) deacylase AVL55_RS17905 PF00583 Acetyltransferase (GNAT) family AVL55_RS17905 PF09500 Putative thioesterase (yiiD_Cterm) AVL55_RS17910 PF00140 Sigma-70 factor, region 1.2 AVL55_RS17910 PF04545 Sigma-70, region 4 AVL55_RS17910 PF04542 Sigma-70 region 2 AVL55_RS17915 PF08668 HDOD domain AVL55_RS17915 PF00563 EAL domain AVL55_RS17920 PF00563 EAL domain AVL55_RS17920 PF08668 HDOD domain AVL55_RS17925 PF18075 FtsX extracellular domain AVL55_RS17930 PF00005 ABC transporter AVL55_RS17935 PF00448 SRP54-type protein, GTPase domain AVL55_RS17935 PF02881 SRP54-type protein, helical bundle domain AVL55_RS17955 PF01914 MarC family integral membrane protein AVL55_RS17965 PF12404 Peptidase AVL55_RS17965 PF00883 Cytosol aminopeptidase family, catalytic domain AVL55_RS17970 PF17746 SfsA N-terminal OB domain AVL55_RS17970 PF03749 Sugar fermentation stimulation protein RE domain AVL55_RS17975 PF01258 Prokaryotic dksA/traR C4-type zinc finger AVL55_RS17980 PF00749 tRNA synthetases class I (E and Q), catalytic domain AVL55_RS17985 PF01743 Poly A polymerase head domain AVL55_RS17985 PF12626 Polymerase A arginine-rich C-terminus AVL55_RS17985 PF12627 Probable RNA and SrmB- binding site of polymerase A AVL55_RS17990 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AVL55_RS17995 PF02548 Ketopantoate hydroxymethyltransferase AVL55_RS18000 PF02569 Pantoate-beta-alanine ligase AVL55_RS18005 PF00282 Pyridoxal-dependent decarboxylase conserved domain AVL55_RS18020 PF01061 ABC-2 type transporter AVL55_RS18025 PF00005 ABC transporter AVL55_RS18030 PF00072 Response regulator receiver domain AVL55_RS18030 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS18035 PF00672 HAMP domain AVL55_RS18035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS18035 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS18045 PF01595 Cyclin M transmembrane N-terminal domain AVL55_RS18045 PF00571 CBS domain AVL55_RS18050 PF03773 Predicted permease AVL55_RS18055 PF13722 5TM C-terminal transporter carbon starvation CstA AVL55_RS18055 PF02554 Carbon starvation protein CstA AVL55_RS18060 PF00258 Flavodoxin AVL55_RS18060 PF00667 FAD binding domain AVL55_RS18060 PF00175 Oxidoreductase NAD-binding domain AVL55_RS18105 PF02472 Biopolymer transport protein ExbD/TolR AVL55_RS18115 PF01618 MotA/TolQ/ExbB proton channel family AVL55_RS18125 PF00593 TonB dependent receptor AVL55_RS18125 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS18130 PF01070 FMN-dependent dehydrogenase AVL55_RS18135 PF13640 2OG-Fe(II) oxygenase superfamily AVL55_RS18135 PF18331 PKHD-type hydroxylase C-terminal domain AVL55_RS18140 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS18140 PF00593 TonB dependent receptor AVL55_RS18155 PF03143 Elongation factor Tu C-terminal domain AVL55_RS18155 PF00009 Elongation factor Tu GTP binding domain AVL55_RS18155 PF03144 Elongation factor Tu domain 2 AVL55_RS18175 PF03309 Type III pantothenate kinase AVL55_RS18180 PF02237 Biotin protein ligase C terminal domain AVL55_RS18180 PF08279 HTH domain AVL55_RS18180 PF03099 Biotin/lipoate A/B protein ligase family AVL55_RS18185 PF01565 FAD binding domain AVL55_RS18185 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AVL55_RS18190 PF13426 PAS domain AVL55_RS18190 PF08447 PAS fold AVL55_RS18190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS18220 PF00679 Elongation factor G C-terminus AVL55_RS18220 PF03764 Elongation factor G, domain IV AVL55_RS18220 PF14492 Elongation Factor G, domain II AVL55_RS18220 PF03144 Elongation factor Tu domain 2 AVL55_RS18220 PF00009 Elongation factor Tu GTP binding domain AVL55_RS18225 PF00177 Ribosomal protein S7p/S5e AVL55_RS18230 PF00164 Ribosomal protein S12/S23 AVL55_RS18235 PF04983 RNA polymerase Rpb1, domain 3 AVL55_RS18235 PF05000 RNA polymerase Rpb1, domain 4 AVL55_RS18235 PF04997 RNA polymerase Rpb1, domain 1 AVL55_RS18235 PF00623 RNA polymerase Rpb1, domain 2 AVL55_RS18235 PF04998 RNA polymerase Rpb1, domain 5 AVL55_RS18240 PF04563 RNA polymerase beta subunit AVL55_RS18240 PF04561 RNA polymerase Rpb2, domain 2 AVL55_RS18240 PF04565 RNA polymerase Rpb2, domain 3 AVL55_RS18240 PF00562 RNA polymerase Rpb2, domain 6 AVL55_RS18240 PF04560 RNA polymerase Rpb2, domain 7 AVL55_RS18240 PF10385 RNA polymerase beta subunit external 1 domain AVL55_RS18245 PF16320 Ribosomal protein L7/L12 dimerisation domain AVL55_RS18245 PF00542 Ribosomal protein L7/L12 C-terminal domain AVL55_RS18250 PF00466 Ribosomal protein L10 AVL55_RS18255 PF00687 Ribosomal protein L1p/L10e family AVL55_RS18260 PF03946 Ribosomal protein L11, N-terminal domain AVL55_RS18260 PF00298 Ribosomal protein L11, RNA binding domain AVL55_RS18275 PF00467 KOW motif AVL55_RS18275 PF02357 Transcription termination factor nusG AVL55_RS18280 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AVL55_RS18290 PF00664 ABC transporter transmembrane region AVL55_RS18290 PF00005 ABC transporter AVL55_RS18295 PF03737 Aldolase/RraA AVL55_RS18300 PF01431 Peptidase family M13 AVL55_RS18300 PF05649 Peptidase family M13 AVL55_RS18315 PF00271 Helicase conserved C-terminal domain AVL55_RS18315 PF00270 DEAD/DEAH box helicase AVL55_RS18315 PF03880 DbpA RNA binding domain AVL55_RS18325 PF01979 Amidohydrolase family AVL55_RS18330 PF08212 Lipocalin-like domain AVL55_RS18335 PF00248 Aldo/keto reductase family AVL55_RS18340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AVL55_RS18345 PF00924 Mechanosensitive ion channel AVL55_RS18345 PF05552 Conserved TM helix AVL55_RS18350 PF07690 Major Facilitator Superfamily AVL55_RS18355 PF00128 Alpha amylase, catalytic domain AVL55_RS18365 PF01227 GTP cyclohydrolase I AVL55_RS18375 PF04371 Porphyromonas-type peptidyl-arginine deiminase AVL55_RS18380 PF00795 Carbon-nitrogen hydrolase AVL55_RS18390 PF00271 Helicase conserved C-terminal domain AVL55_RS18390 PF08494 DEAD/H associated AVL55_RS18390 PF00270 DEAD/DEAH box helicase AVL55_RS18395 PF04235 Protein of unknown function (DUF418) AVL55_RS18410 PF04679 ATP dependent DNA ligase C terminal region AVL55_RS18410 PF01068 ATP dependent DNA ligase domain AVL55_RS18410 PF04675 DNA ligase N terminus AVL55_RS18415 PF08207 Elongation factor P (EF-P) KOW-like domain AVL55_RS18415 PF09285 Elongation factor P, C-terminal AVL55_RS18415 PF01132 Elongation factor P (EF-P) OB domain AVL55_RS18420 PF00294 pfkB family carbohydrate kinase AVL55_RS18435 PF02798 Glutathione S-transferase, N-terminal domain AVL55_RS18435 PF00043 Glutathione S-transferase, C-terminal domain AVL55_RS18440 PF02798 Glutathione S-transferase, N-terminal domain AVL55_RS18450 PF00561 alpha/beta hydrolase fold AVL55_RS18465 PF00171 Aldehyde dehydrogenase family AVL55_RS18470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AVL55_RS18470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AVL55_RS18470 PF00205 Thiamine pyrophosphate enzyme, central domain AVL55_RS18485 PF00762 Ferrochelatase AVL55_RS18490 PF03806 AbgT putative transporter family AVL55_RS18495 PF01145 SPFH domain / Band 7 family AVL55_RS18500 PF01145 SPFH domain / Band 7 family AVL55_RS18500 PF12221 Bacterial membrane protein N terminal AVL55_RS18505 PF16360 GTP-binding GTPase Middle Region AVL55_RS18505 PF01926 50S ribosome-binding GTPase AVL55_RS18505 PF13167 GTP-binding GTPase N-terminal AVL55_RS18510 PF17209 Hfq protein AVL55_RS18520 PF08676 MutL C terminal dimerisation domain AVL55_RS18520 PF01119 DNA mismatch repair protein, C-terminal domain AVL55_RS18525 PF01520 N-acetylmuramoyl-L-alanine amidase AVL55_RS18530 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AVL55_RS18535 PF03853 YjeF-related protein N-terminus AVL55_RS18535 PF01256 Carbohydrate kinase AVL55_RS18540 PF08331 Domain of unknown function (DUF1730) AVL55_RS18550 PF01208 Uroporphyrinogen decarboxylase (URO-D) AVL55_RS18555 PF00293 NUDIX domain AVL55_RS18555 PF09297 NADH pyrophosphatase zinc ribbon domain AVL55_RS18560 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AVL55_RS18565 PF01475 Ferric uptake regulator family AVL55_RS18575 PF01894 Uncharacterised protein family UPF0047 AVL55_RS18580 PF00691 OmpA family AVL55_RS18580 PF05736 OprF membrane domain AVL55_RS18585 PF00772 DnaB-like helicase N terminal domain AVL55_RS18585 PF03796 DnaB-like helicase C terminal domain AVL55_RS18610 PF03475 3-alpha domain AVL55_RS18610 PF03473 MOSC domain AVL55_RS18620 PF00072 Response regulator receiver domain AVL55_RS18620 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS18625 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS18625 PF00672 HAMP domain AVL55_RS18625 PF16750 Sensor domain of 2-component histidine kinase AVL55_RS18625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS18650 PF01281 Ribosomal protein L9, N-terminal domain AVL55_RS18650 PF03948 Ribosomal protein L9, C-terminal domain AVL55_RS18655 PF01084 Ribosomal protein S18 AVL55_RS18660 PF01250 Ribosomal protein S6 AVL55_RS18670 PF00005 ABC transporter AVL55_RS18680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS18680 PF08447 PAS fold AVL55_RS18685 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS18685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS18685 PF00989 PAS fold AVL55_RS18685 PF16736 Single Cache-like AVL55_RS18690 PF00672 HAMP domain AVL55_RS18690 PF02743 Cache domain AVL55_RS18690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AVL55_RS18695 PF03601 Conserved hypothetical protein 698 AVL55_RS18705 PF00664 ABC transporter transmembrane region AVL55_RS18705 PF00005 ABC transporter AVL55_RS18710 PF00664 ABC transporter transmembrane region AVL55_RS18710 PF00005 ABC transporter AVL55_RS18715 PF08173 Membrane bound YbgT-like protein AVL55_RS18720 PF02322 Cytochrome bd terminal oxidase subunit II AVL55_RS18725 PF01654 Cytochrome bd terminal oxidase subunit I AVL55_RS18735 PF00158 Sigma-54 interaction domain AVL55_RS18735 PF00072 Response regulator receiver domain AVL55_RS18735 PF02954 Bacterial regulatory protein, Fis family AVL55_RS18755 PF13474 SnoaL-like domain AVL55_RS18760 PF02649 Type I GTP cyclohydrolase folE2 AVL55_RS18800 PF05532 CsbD-like AVL55_RS18815 PF00472 RF-1 domain AVL55_RS18820 PF00364 Biotin-requiring enzyme AVL55_RS18820 PF00561 alpha/beta hydrolase fold AVL55_RS18845 PF01292 Prokaryotic cytochrome b561 AVL55_RS18850 PF04264 YceI-like domain AVL55_RS18855 PF07992 Pyridine nucleotide-disulphide oxidoreductase AVL55_RS18860 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS18860 PF00593 TonB dependent receptor AVL55_RS18870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS18870 PF03466 LysR substrate binding domain AVL55_RS18875 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AVL55_RS18880 PF16884 N-terminal domain of oxidoreductase AVL55_RS18880 PF00107 Zinc-binding dehydrogenase AVL55_RS18885 PF01590 GAF domain AVL55_RS18885 PF00360 Phytochrome region AVL55_RS18885 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS18885 PF00563 EAL domain AVL55_RS18890 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS18890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS18890 PF00072 Response regulator receiver domain AVL55_RS18890 PF09308 LuxQ, periplasmic AVL55_RS18900 PF00296 Luciferase-like monooxygenase AVL55_RS18915 PF18766 SWI2/SNF2 ATPase AVL55_RS18915 PF11867 Domain of unknown function (DUF3387) AVL55_RS18915 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AVL55_RS18920 PF02481 DNA recombination-mediator protein A AVL55_RS18920 PF17782 DprA winged helix domain AVL55_RS18925 PF16124 RecQ zinc-binding AVL55_RS18925 PF09382 RQC domain AVL55_RS18925 PF00271 Helicase conserved C-terminal domain AVL55_RS18925 PF00270 DEAD/DEAH box helicase AVL55_RS18925 PF00570 HRDC domain AVL55_RS18930 PF01420 Type I restriction modification DNA specificity domain AVL55_RS18935 PF02384 N-6 DNA Methylase AVL55_RS18955 PF01380 SIS domain AVL55_RS18960 PF08220 DeoR-like helix-turn-helix domain AVL55_RS18960 PF00455 DeoR C terminal sensor domain AVL55_RS18965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AVL55_RS18965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AVL55_RS18970 PF14602 Hexapeptide repeat of succinyl-transferase AVL55_RS18970 PF00132 Bacterial transferase hexapeptide (six repeats) AVL55_RS18970 PF12804 MobA-like NTP transferase domain AVL55_RS18975 PF00990 Diguanylate cyclase, GGDEF domain AVL55_RS18980 PF00892 EamA-like transporter family AVL55_RS18985 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AVL55_RS18985 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AVL55_RS18990 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain AVL55_RS18990 PF00730 HhH-GPD superfamily base excision DNA repair protein AVL55_RS18995 PF00144 Beta-lactamase AVL55_RS19000 PF17944 Arginine decarboxylase C-terminal helical extension AVL55_RS19000 PF17810 Arginine decarboxylase helical bundle domain AVL55_RS19000 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AVL55_RS19010 PF02233 NAD(P) transhydrogenase beta subunit AVL55_RS19015 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AVL55_RS19020 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AVL55_RS19020 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AVL55_RS19030 PF04820 Tryptophan halogenase AVL55_RS19060 PF00593 TonB dependent receptor AVL55_RS19060 PF07715 TonB-dependent Receptor Plug Domain AVL55_RS19100 PF01040 UbiA prenyltransferase family AVL55_RS19105 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AVL55_RS19110 PF00510 Cytochrome c oxidase subunit III AVL55_RS19115 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL55_RS19120 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AVL55_RS19120 PF06481 COX Aromatic Rich Motif AVL55_RS19145 PF00118 TCP-1/cpn60 chaperonin family AVL55_RS19150 PF00166 Chaperonin 10 Kd subunit AVL55_RS19155 PF04186 FxsA cytoplasmic membrane protein AVL55_RS19160 PF03091 CutA1 divalent ion tolerance protein AVL55_RS19165 PF02683 Cytochrome C biogenesis protein transmembrane region AVL55_RS19165 PF11412 Disulphide bond corrector protein DsbC AVL55_RS19170 PF01551 Peptidase family M23 AVL55_RS19175 PF01220 Dehydroquinase class II AVL55_RS19180 PF00364 Biotin-requiring enzyme AVL55_RS19185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AVL55_RS19185 PF02785 Biotin carboxylase C-terminal domain AVL55_RS19185 PF00289 Biotin carboxylase, N-terminal domain AVL55_RS19205 PF11490 DNA polymerase III polC-type N-terminus II AVL55_RS19205 PF07733 Bacterial DNA polymerase III alpha NTPase domain AVL55_RS19205 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AVL55_RS19205 PF14579 Helix-hairpin-helix motif AVL55_RS19205 PF02811 PHP domain AVL55_RS19205 PF00929 Exonuclease AVL55_RS19225 PF01355 High potential iron-sulfur protein AVL55_RS19230 PF01425 Amidase AVL55_RS19245 PF01207 Dihydrouridine synthase (Dus) AVL55_RS19250 PF02954 Bacterial regulatory protein, Fis family AVL55_RS19255 PF01808 AICARFT/IMPCHase bienzyme AVL55_RS19255 PF02142 MGS-like domain AVL55_RS19265 PF02844 Phosphoribosylglycinamide synthetase, N domain AVL55_RS19265 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AVL55_RS19265 PF02843 Phosphoribosylglycinamide synthetase, C domain AVL55_RS19280 PF00027 Cyclic nucleotide-binding domain AVL55_RS19280 PF00520 Ion transport protein AVL55_RS19285 PF00485 Phosphoribulokinase / Uridine kinase family AVL55_RS19295 PF00072 Response regulator receiver domain AVL55_RS19295 PF00486 Transcriptional regulatory protein, C terminal AVL55_RS19300 PF00672 HAMP domain AVL55_RS19300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AVL55_RS19300 PF00512 His Kinase A (phospho-acceptor) domain AVL55_RS19310 PF17137 Domain of unknown function (DUF5110) AVL55_RS19310 PF16338 Domain of unknown function (DUF4968) AVL55_RS19310 PF13802 Galactose mutarotase-like AVL55_RS19310 PF01055 Glycosyl hydrolases family 31 AVL55_RS19315 PF01293 Phosphoenolpyruvate carboxykinase AVL55_RS19320 PF01430 Hsp33 protein AVL55_RS19325 PF01479 S4 domain AVL55_RS19330 PF11356 Type II secretion system protein C AVL55_RS19335 PF00263 Bacterial type II and III secretion system protein AVL55_RS19335 PF03958 Bacterial type II/III secretion system short domain AVL55_RS19340 PF00437 Type II/IV secretion system protein AVL55_RS19345 PF00482 Type II secretion system (T2SS), protein F AVL55_RS19350 PF07963 Prokaryotic N-terminal methylation motif AVL55_RS19350 PF08334 Type II secretion system (T2SS), protein G AVL55_RS19355 PF12019 Type II transport protein GspH AVL55_RS19360 PF02501 Type II secretion system (T2SS), protein I AVL55_RS19360 PF07963 Prokaryotic N-terminal methylation motif AVL55_RS19365 PF11612 Type II secretion system (T2SS), protein J AVL55_RS19365 PF07963 Prokaryotic N-terminal methylation motif AVL55_RS19375 PF12693 GspL periplasmic domain AVL55_RS19375 PF05134 Type II secretion system (T2SS), protein L AVL55_RS19380 PF04612 Type II secretion system (T2SS), protein M AVL55_RS19395 PF12706 Beta-lactamase superfamily domain AVL55_RS19400 PF00171 Aldehyde dehydrogenase family AVL55_RS19405 PF01931 Protein of unknown function DUF84 AVL55_RS19410 PF13419 Haloacid dehalogenase-like hydrolase AVL55_RS19415 PF00293 NUDIX domain AVL55_RS19420 PF00459 Inositol monophosphatase family AVL55_RS19430 PF00535 Glycosyl transferase family 2 AVL55_RS19435 PF04349 Periplasmic glucan biosynthesis protein, MdoG AVL55_RS19445 PF06794 Uncharacterised protein family (UPF0270) AVL55_RS19450 PF00561 alpha/beta hydrolase fold AVL55_RS19460 PF12848 ABC transporter AVL55_RS19460 PF00005 ABC transporter AVL55_RS19475 PF04102 SlyX AVL55_RS19485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AVL55_RS19485 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AVL55_RS19495 PF03449 Transcription elongation factor, N-terminal AVL55_RS19495 PF01272 Transcription elongation factor, GreA/GreB, C-term AVL55_RS19500 PF16921 Tex protein YqgF-like domain AVL55_RS19500 PF09371 Tex-like protein N-terminal domain AVL55_RS19500 PF17674 HHH domain AVL55_RS19500 PF00575 S1 RNA binding domain AVL55_RS19520 PF00561 alpha/beta hydrolase fold AVL55_RS19525 PF00156 Phosphoribosyl transferase domain AVL55_RS19535 PF01106 NifU-like domain AVL55_RS19535 PF01521 Iron-sulphur cluster biosynthesis AVL55_RS19545 PF01177 Asp/Glu/Hydantoin racemase AVL55_RS19555 PF01554 MatE AVL55_RS19570 PF02630 SCO1/SenC AVL55_RS19575 PF01040 UbiA prenyltransferase family AVL55_RS19580 PF02628 Cytochrome oxidase assembly protein AVL55_RS19600 PF00510 Cytochrome c oxidase subunit III AVL55_RS19605 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AVL55_RS19610 PF00115 Cytochrome C and Quinol oxidase polypeptide I AVL55_RS19615 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AVL55_RS19615 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AVL55_RS19620 PF00717 Peptidase S24-like AVL55_RS19620 PF01726 LexA DNA binding domain AVL55_RS19630 PF01553 Acyltransferase AVL55_RS19635 PF00585 C-terminal regulatory domain of Threonine dehydratase AVL55_RS19635 PF00291 Pyridoxal-phosphate dependent enzyme AVL55_RS19640 PF00920 Dehydratase family AVL55_RS19645 PF03458 UPF0126 domain AVL55_RS19650 PF01078 Magnesium chelatase, subunit ChlI AVL55_RS19650 PF13335 Magnesium chelatase, subunit ChlI C-terminal AVL55_RS19655 PF03466 LysR substrate binding domain AVL55_RS19655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AVL55_RS19660 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AVL55_RS19660 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AVL55_RS19665 PF07690 Major Facilitator Superfamily AVL55_RS19670 PF00326 Prolyl oligopeptidase family AVL55_RS19675 PF17243 POTRA domain TamA domain 1 AVL55_RS19675 PF07244 Surface antigen variable number repeat AVL55_RS19675 PF01103 Surface antigen AVL55_RS19680 PF04357 TamB, inner membrane protein subunit of TAM complex AVL55_RS19705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AVL55_RS19705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AVL55_RS19715 PF01472 PUA domain AVL55_RS19715 PF00696 Amino acid kinase family AVL55_RS19735 PF03109 ABC1 family AVL55_RS19760 PF01979 Amidohydrolase family AVL55_RS19780 PF01206 Sulfurtransferase TusA AVL55_RS19785 PF00156 Phosphoribosyl transferase domain AVL55_RS19790 PF01138 3' exoribonuclease family, domain 1 AVL55_RS19790 PF03725 3' exoribonuclease family, domain 2 AVL55_RS19795 PF03755 YicC-like family, N-terminal region AVL55_RS19795 PF08340 Domain of unknown function (DUF1732) AVL55_RS19840 PF00145 C-5 cytosine-specific DNA methylase AVL55_RS19865 PF01609 Transposase DDE domain AVL55_RS19865 PF13808 DDE_Tnp_1-associated AVL55_RS19870 PF13340 Putative transposase of IS4/5 family (DUF4096) AVL55_RS19880 PF03203 MerC mercury resistance protein AVL55_RS19885 PF00376 MerR family regulatory protein AVL55_RS19885 PF09278 MerR, DNA binding AVL55_RS19915 PF04820 Tryptophan halogenase AVL55_RS19920 PF04820 Tryptophan halogenase AVL55_RS19930 PF00232 Glycosyl hydrolase family 1 AVL55_RS19940 PF00356 Bacterial regulatory proteins, lacI family AVL55_RS19955 PF05736 OprF membrane domain AVL55_RS19955 PF00691 OmpA family AVL55_RS19960 PF01966 HD domain AVL55_RS19975 PF00043 Glutathione S-transferase, C-terminal domain AVL55_RS19975 PF02798 Glutathione S-transferase, N-terminal domain AVL55_RS19990 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AVL55_RS19990 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AVL55_RS19995 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL55_RS19995 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVL55_RS20000 PF00231 ATP synthase AVL55_RS20005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AVL55_RS20005 PF00306 ATP synthase alpha/beta chain, C terminal domain AVL55_RS20005 PF02874 ATP synthase alpha/beta family, beta-barrel domain AVL55_RS20010 PF00213 ATP synthase delta (OSCP) subunit AVL55_RS20015 PF00430 ATP synthase B/B' CF(0) AVL55_RS20020 PF00137 ATP synthase subunit C AVL55_RS20025 PF00119 ATP synthase A chain AVL55_RS20035 PF02195 ParB-like nuclease domain AVL55_RS20035 PF17762 HTH domain found in ParB protein AVL55_RS20040 PF13614 AAA domain AVL55_RS20045 PF02527 rRNA small subunit methyltransferase G AVL55_RS20050 PF01134 Glucose inhibited division protein A AVL55_RS20050 PF13932 GidA associated domain AVL55_RS20065 PF00258 Flavodoxin AVL55_RS20070 PF01926 50S ribosome-binding GTPase AVL55_RS20070 PF12631 MnmE helical domain AVL55_RS20070 PF10396 GTP-binding protein TrmE N-terminus AVL55_RS20075 PF04461 Protein of unknown function (DUF520) AVL55_RS20080 PF02096 60Kd inner membrane protein AVL55_RS20080 PF14849 YidC periplasmic domain AVL55_RS20085 PF00825 Ribonuclease P AVL55_RS20090 PF00468 Ribosomal protein L34