AVL55_RS00005 SM00382 ATPases associated with a variety of cellular activities AVL55_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AVL55_RS00010 SM00480 DNA polymerase III beta subunit AVL55_RS00020 SM00387 Histidine kinase-like ATPases AVL55_RS00020 SM00433 TopoisomeraseII AVL55_RS00070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AVL55_RS00070 SM00474 3'-5' exonuclease AVL55_RS00070 SM00475 5'-3' exonuclease AVL55_RS00070 SM00482 DNA polymerase A domain AVL55_RS00105 SM00257 Lysin motif AVL55_RS00200 SM00481 DNA polymerase alpha chain like domain AVL55_RS00285 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AVL55_RS00285 SM01232 AVL55_RS00285 AVL55_RS00310 SM00052 Putative diguanylate phosphodiesterase AVL55_RS00310 SM00267 diguanylate cyclase AVL55_RS00320 SM00829 Enoylreductase AVL55_RS00325 SM00450 Rhodanese Homology Domain AVL55_RS00360 SM00052 Putative diguanylate phosphodiesterase AVL55_RS00360 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL55_RS00360 SM00267 diguanylate cyclase AVL55_RS00380 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS00480 SM00849 Metallo-beta-lactamase superfamily AVL55_RS00500 SM00876 Biotin and Thiamin Synthesis associated domain AVL55_RS00550 SM00267 diguanylate cyclase AVL55_RS00560 SM00072 Guanylate kinase homologues. AVL55_RS00565 SM01409 AVL55_RS00565 AVL55_RS00570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_RS00570 SM00954 Region found in RelA / SpoT proteins AVL55_RS00585 SM00487 DEAD-like helicases superfamily AVL55_RS00585 SM00490 helicase superfamily c-terminal domain AVL55_RS00615 SM00382 ATPases associated with a variety of cellular activities AVL55_RS00660 SM00422 helix_turn_helix, mercury resistance AVL55_RS00745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS00765 SM00052 Putative diguanylate phosphodiesterase AVL55_RS00765 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_RS00765 SM00267 diguanylate cyclase AVL55_RS00780 SM00341 Helicase and RNase D C-terminal AVL55_RS00780 SM00487 DEAD-like helicases superfamily AVL55_RS00780 SM00490 helicase superfamily c-terminal domain AVL55_RS00780 SM00956 AVL55_RS00780 AVL55_RS00790 SM00924 MgtE intracellular N domain AVL55_RS00800 SM00267 diguanylate cyclase AVL55_RS00800 SM00448 cheY-homologous receiver domain AVL55_RS00810 SM00971 Serine acetyltransferase, N-terminal AVL55_RS00815 SM00267 diguanylate cyclase AVL55_RS00855 SM00014 Acid phosphatase homologues AVL55_RS00895 SM01130 AVL55_RS00895 AVL55_RS00900 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL55_RS00935 SM00354 helix_turn _helix lactose operon repressor AVL55_RS01040 SM00420 helix_turn_helix, Deoxyribose operon repressor AVL55_RS01040 SM01134 AVL55_RS01040 AVL55_RS01085 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_RS01120 SM00342 helix_turn_helix, arabinose operon control protein AVL55_RS01125 SM01038 Beta galactosidase small chain AVL55_RS01130 SM00448 cheY-homologous receiver domain AVL55_RS01130 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS01135 SM00387 Histidine kinase-like ATPases AVL55_RS01160 SM00478 endonuclease III AVL55_RS01160 SM00525 AVL55_RS01160 AVL55_RS01215 SM00857 Resolvase, N terminal domain AVL55_RS01240 SM00422 helix_turn_helix, mercury resistance AVL55_RS01340 SM00448 cheY-homologous receiver domain AVL55_RS01340 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS01345 SM00387 Histidine kinase-like ATPases AVL55_RS01385 SM00422 helix_turn_helix, mercury resistance AVL55_RS01450 SM00267 diguanylate cyclase AVL55_RS01465 SM00342 helix_turn_helix, arabinose operon control protein AVL55_RS01465 SM00387 Histidine kinase-like ATPases AVL55_RS01465 SM00448 cheY-homologous receiver domain AVL55_RS01480 SM00354 helix_turn _helix lactose operon repressor AVL55_RS01555 SM00855 Phosphoglycerate mutase family AVL55_RS01575 SM00671 Sel1-like repeats. AVL55_RS01580 SM00382 ATPases associated with a variety of cellular activities AVL55_RS01585 SM01403 AVL55_RS01585 AVL55_RS01605 SM01382 AVL55_RS01605 AVL55_RS01605 SM01383 AVL55_RS01605 AVL55_RS01620 SM00322 K homology RNA-binding domain AVL55_RS01665 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS01665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS01700 SM00487 DEAD-like helicases superfamily AVL55_RS01700 SM00490 helicase superfamily c-terminal domain AVL55_RS01700 SM00847 Helicase associated domain (HA2) Add an annotation AVL55_RS01730 SM00342 helix_turn_helix, arabinose operon control protein AVL55_RS01740 SM00938 Nitrogen regulatory protein P-II AVL55_RS01755 SM00052 Putative diguanylate phosphodiesterase AVL55_RS01755 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_RS01755 SM00091 PAS domain AVL55_RS01755 SM00267 diguanylate cyclase AVL55_RS01825 SM00073 Histidine Phosphotransfer domain AVL55_RS01825 SM00387 Histidine kinase-like ATPases AVL55_RS01825 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS01825 SM00448 cheY-homologous receiver domain AVL55_RS01830 SM00434 DNA Topoisomerase IV AVL55_RS01840 SM00052 Putative diguanylate phosphodiesterase AVL55_RS01840 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_RS01840 SM00267 diguanylate cyclase AVL55_RS01845 SM01150 AVL55_RS01845 AVL55_RS01920 SM00965 Secretin and TonB N terminus short domain AVL55_RS01940 SM00842 Cell division protein FtsA AVL55_RS01950 SM00919 Malic enzyme, NAD binding domain AVL55_RS01950 SM01274 AVL55_RS01950 AVL55_RS01970 SM01060 AVL55_RS01970 AVL55_RS02010 SM00859 Semialdehyde dehydrogenase, NAD binding domain AVL55_RS02015 SM00851 MGS-like domain AVL55_RS02025 SM00448 cheY-homologous receiver domain AVL55_RS02025 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS02030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS02030 SM00387 Histidine kinase-like ATPases AVL55_RS02030 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS02050 SM00382 ATPases associated with a variety of cellular activities AVL55_RS02075 SM00450 Rhodanese Homology Domain AVL55_RS02115 SM00479 AVL55_RS02115 AVL55_RS02135 SM00632 AVL55_RS02135 AVL55_RS02135 SM00642 Alpha-amylase domain AVL55_RS02190 SM00267 diguanylate cyclase AVL55_RS02195 SM01004 Delta-aminolevulinic acid dehydratase AVL55_RS02205 SM00487 DEAD-like helicases superfamily AVL55_RS02205 SM00490 helicase superfamily c-terminal domain AVL55_RS02215 SM00357 Cold shock protein domain AVL55_RS02215 SM00382 ATPases associated with a variety of cellular activities AVL55_RS02215 SM00959 Rho termination factor, N-terminal domain AVL55_RS02225 SM00387 Histidine kinase-like ATPases AVL55_RS02225 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS02225 SM00448 cheY-homologous receiver domain AVL55_RS02235 SM01001 AIR carboxylase AVL55_RS02295 SM00788 Adenylosuccinate synthetase AVL55_RS02345 SM01005 Alanine racemase, C-terminal domain AVL55_RS02375 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_RS02445 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS02460 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS02600 SM00257 Lysin motif AVL55_RS02640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS02640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS02640 SM01049 AVL55_RS02640 AVL55_RS02645 SM00344 helix_turn_helix ASNC type AVL55_RS02650 SM00829 Enoylreductase AVL55_RS02680 SM00448 cheY-homologous receiver domain AVL55_RS02680 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS02685 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS02690 SM00287 Bacterial SH3 domain homologues AVL55_RS02695 SM01118 AVL55_RS02695 AVL55_RS02705 SM00927 DNA mismatch repair enzyme MutH AVL55_RS02715 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL55_RS02735 SM00448 cheY-homologous receiver domain AVL55_RS02740 SM00267 diguanylate cyclase AVL55_RS02745 SM00387 Histidine kinase-like ATPases AVL55_RS02745 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS02745 SM00448 cheY-homologous receiver domain AVL55_RS02770 SM00487 DEAD-like helicases superfamily AVL55_RS02770 SM00490 helicase superfamily c-terminal domain AVL55_RS02780 SM00670 Large family of predicted nucleotide-binding domains AVL55_RS02785 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL55_RS02810 SM00487 DEAD-like helicases superfamily AVL55_RS02810 SM00490 helicase superfamily c-terminal domain AVL55_RS02815 SM00028 Tetratricopeptide repeats AVL55_RS02850 SM00387 Histidine kinase-like ATPases AVL55_RS02850 SM00433 TopoisomeraseII AVL55_RS02885 SM00841 Elongation factor P, C-terminal AVL55_RS02885 SM01185 AVL55_RS02885 AVL55_RS02930 SM00014 Acid phosphatase homologues AVL55_RS02940 SM01012 AVL55_RS02940 AVL55_RS02965 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AVL55_RS02985 SM00267 diguanylate cyclase AVL55_RS02990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_RS02990 SM00091 PAS domain AVL55_RS02990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS03005 SM00382 ATPases associated with a variety of cellular activities AVL55_RS03065 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AVL55_RS03070 SM01007 Class II Aldolase and Adducin N-terminal domain AVL55_RS03100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS03100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS03110 SM00400 zinc finger AVL55_RS03110 SM00493 AVL55_RS03110 AVL55_RS03110 SM00766 DNA primase DnaG DnaB-binding AVL55_RS03135 SM01207 AVL55_RS03135 AVL55_RS03140 SM00905 Dihydroneopterin aldolase AVL55_RS03175 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS03185 SM00387 Histidine kinase-like ATPases AVL55_RS03190 SM00448 cheY-homologous receiver domain AVL55_RS03190 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS03195 SM00387 Histidine kinase-like ATPases AVL55_RS03195 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS03210 SM00710 Parallel beta-helix repeats AVL55_RS03245 SM00028 Tetratricopeptide repeats AVL55_RS03270 SM00387 Histidine kinase-like ATPases AVL55_RS03270 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS03270 SM00448 cheY-homologous receiver domain AVL55_RS03275 SM00028 Tetratricopeptide repeats AVL55_RS03310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS03310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS03325 SM00650 Ribosomal RNA adenine dimethylases AVL55_RS03350 SM00271 DnaJ molecular chaperone homology domain AVL55_RS03395 SM00954 Region found in RelA / SpoT proteins AVL55_RS03425 SM00822 AVL55_RS03425 AVL55_RS03430 SM01236 AVL55_RS03430 AVL55_RS03475 SM00387 Histidine kinase-like ATPases AVL55_RS03475 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS03480 SM00448 cheY-homologous receiver domain AVL55_RS03480 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS03525 SM00924 MgtE intracellular N domain AVL55_RS03555 SM00382 ATPases associated with a variety of cellular activities AVL55_RS03585 SM00382 ATPases associated with a variety of cellular activities AVL55_RS03620 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL55_RS03625 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL55_RS03700 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. AVL55_RS03710 SM00563 Phosphate acyltransferases AVL55_RS03745 SM00487 DEAD-like helicases superfamily AVL55_RS03850 SM00052 Putative diguanylate phosphodiesterase AVL55_RS03850 SM00267 diguanylate cyclase AVL55_RS03895 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_RS03895 SM00091 PAS domain AVL55_RS03895 SM00387 Histidine kinase-like ATPases AVL55_RS03895 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS03895 SM00448 cheY-homologous receiver domain AVL55_RS03920 SM00861 Transketolase, pyrimidine binding domain AVL55_RS03925 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_RS03950 SM00448 cheY-homologous receiver domain AVL55_RS03950 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS03955 SM00387 Histidine kinase-like ATPases AVL55_RS03955 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS04015 SM00382 ATPases associated with a variety of cellular activities AVL55_RS04055 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL55_RS04065 SM01263 AVL55_RS04065 AVL55_RS04085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS04110 SM00642 Alpha-amylase domain AVL55_RS04125 SM00245 tail specific protease AVL55_RS04145 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL55_RS04145 SM00866 AVL55_RS04145 AVL55_RS04190 SM00382 ATPases associated with a variety of cellular activities AVL55_RS04230 SM00382 ATPases associated with a variety of cellular activities AVL55_RS04320 SM00850 LytTr DNA-binding domain AVL55_RS04335 SM00448 cheY-homologous receiver domain AVL55_RS04340 SM00091 PAS domain AVL55_RS04360 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_RS04370 SM00487 DEAD-like helicases superfamily AVL55_RS04370 SM00490 helicase superfamily c-terminal domain AVL55_RS04380 SM00320 WD40 repeats AVL55_RS04390 SM00382 ATPases associated with a variety of cellular activities AVL55_RS04400 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_RS04415 SM01329 AVL55_RS04415 AVL55_RS04420 SM00917 LeuA allosteric (dimerisation) domain AVL55_RS04430 SM01192 AVL55_RS04430 AVL55_RS04430 SM01193 AVL55_RS04430 AVL55_RS04440 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AVL55_RS04440 SM00534 ATPase domain of DNA mismatch repair MUTS family AVL55_RS04450 SM00382 ATPases associated with a variety of cellular activities AVL55_RS04455 SM00382 ATPases associated with a variety of cellular activities AVL55_RS04475 SM00382 ATPases associated with a variety of cellular activities AVL55_RS04555 SM00382 ATPases associated with a variety of cellular activities AVL55_RS04595 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL55_RS04600 SM01329 AVL55_RS04600 AVL55_RS04620 SM00267 diguanylate cyclase AVL55_RS04680 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_RS04725 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL55_RS04735 SM00935 Outer membrane protein (OmpH-like) AVL55_RS04760 SM00481 DNA polymerase alpha chain like domain AVL55_RS04775 SM00267 diguanylate cyclase AVL55_RS04795 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_RS04800 SM01211 AVL55_RS04800 AVL55_RS04835 SM00858 AVL55_RS04835 AVL55_RS04840 SM00260 Two component signalling adaptor domain AVL55_RS04840 SM00448 cheY-homologous receiver domain AVL55_RS04845 SM00138 Methyltransferase, chemotaxis proteins AVL55_RS04890 SM00047 Lysozyme subfamily 2 AVL55_RS04960 SM00858 AVL55_RS04960 AVL55_RS05070 SM00984 UDP binding domain AVL55_RS05100 SM00382 ATPases associated with a variety of cellular activities AVL55_RS05105 SM00387 Histidine kinase-like ATPases AVL55_RS05105 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS05110 SM00382 ATPases associated with a variety of cellular activities AVL55_RS05110 SM00448 cheY-homologous receiver domain AVL55_RS05135 SM00382 ATPases associated with a variety of cellular activities AVL55_RS05195 SM00382 ATPases associated with a variety of cellular activities AVL55_RS05195 SM00962 SRP54-type protein, GTPase domain AVL55_RS05210 SM00448 cheY-homologous receiver domain AVL55_RS05220 SM00073 Histidine Phosphotransfer domain AVL55_RS05220 SM00260 Two component signalling adaptor domain AVL55_RS05220 SM00387 Histidine kinase-like ATPases AVL55_RS05220 SM01231 AVL55_RS05220 AVL55_RS05225 SM00448 cheY-homologous receiver domain AVL55_RS05235 SM00260 Two component signalling adaptor domain AVL55_RS05240 SM00260 Two component signalling adaptor domain AVL55_RS05260 SM01018 B12 binding domain AVL55_RS05275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS05275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS05290 SM00947 Carbonic anhydrase AVL55_RS05325 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AVL55_RS05370 SM00382 ATPases associated with a variety of cellular activities AVL55_RS05375 SM00382 ATPases associated with a variety of cellular activities AVL55_RS05395 SM00382 ATPases associated with a variety of cellular activities AVL55_RS05420 SM00091 PAS domain AVL55_RS05420 SM00382 ATPases associated with a variety of cellular activities AVL55_RS05435 SM00344 helix_turn_helix ASNC type AVL55_RS05440 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVL55_RS05495 SM00028 Tetratricopeptide repeats AVL55_RS05580 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL55_RS05605 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS05655 SM00422 helix_turn_helix, mercury resistance AVL55_RS05680 SM00422 helix_turn_helix, mercury resistance AVL55_RS05685 SM00857 Resolvase, N terminal domain AVL55_RS05720 SM00479 AVL55_RS05720 AVL55_RS05750 SM00487 DEAD-like helicases superfamily AVL55_RS05785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_RS05815 SM00671 Sel1-like repeats. AVL55_RS05870 SM00422 helix_turn_helix, mercury resistance AVL55_RS05885 SM00422 helix_turn_helix, mercury resistance AVL55_RS05890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AVL55_RS06000 SM00382 ATPases associated with a variety of cellular activities AVL55_RS06035 SM00382 ATPases associated with a variety of cellular activities AVL55_RS06055 SM00327 von Willebrand factor (vWF) type A domain AVL55_RS06070 SM00778 Zinc-binding domain of primase-helicase AVL55_RS06140 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS06150 SM00836 DALR anticodon binding domain AVL55_RS06150 SM01016 Arginyl tRNA synthetase N terminal dom AVL55_RS06160 SM00028 Tetratricopeptide repeats AVL55_RS06175 SM00421 helix_turn_helix, Lux Regulon AVL55_RS06175 SM00448 cheY-homologous receiver domain AVL55_RS06180 SM00052 Putative diguanylate phosphodiesterase AVL55_RS06180 SM00267 diguanylate cyclase AVL55_RS06200 SM00267 diguanylate cyclase AVL55_RS06245 SM00937 AVL55_RS06245 AVL55_RS06295 SM00463 Small MutS-related domain AVL55_RS06325 SM00763 PrkA AAA domain AVL55_RS06355 SM00965 Secretin and TonB N terminus short domain AVL55_RS06370 SM00479 AVL55_RS06370 AVL55_RS06390 SM00357 Cold shock protein domain AVL55_RS06405 SM00478 endonuclease III AVL55_RS06415 SM00900 AVL55_RS06415 AVL55_RS06455 SM00487 DEAD-like helicases superfamily AVL55_RS06455 SM00490 helicase superfamily c-terminal domain AVL55_RS06555 SM00028 Tetratricopeptide repeats AVL55_RS06560 SM00327 von Willebrand factor (vWF) type A domain AVL55_RS06600 SM00052 Putative diguanylate phosphodiesterase AVL55_RS06600 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_RS06600 SM00267 diguanylate cyclase AVL55_RS06610 SM00855 Phosphoglycerate mutase family AVL55_RS06620 SM01091 Transporter associated domain AVL55_RS06630 SM00382 ATPases associated with a variety of cellular activities AVL55_RS06630 SM00962 SRP54-type protein, GTPase domain AVL55_RS06630 SM00963 SRP54-type protein, helical bundle domain AVL55_RS06675 SM00382 ATPases associated with a variety of cellular activities AVL55_RS06725 SM00830 Chorismate mutase type II AVL55_RS06730 SM00830 Chorismate mutase type II AVL55_RS06735 SM00448 cheY-homologous receiver domain AVL55_RS06750 SM00331 Sigma factor PP2C-like phosphatases AVL55_RS06750 SM00448 cheY-homologous receiver domain AVL55_RS06760 SM00052 Putative diguanylate phosphodiesterase AVL55_RS06760 SM00267 diguanylate cyclase AVL55_RS06770 SM00387 Histidine kinase-like ATPases AVL55_RS06770 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS06780 SM00382 ATPases associated with a variety of cellular activities AVL55_RS06780 SM00448 cheY-homologous receiver domain AVL55_RS06810 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL55_RS06815 SM00382 ATPases associated with a variety of cellular activities AVL55_RS06895 SM00387 Histidine kinase-like ATPases AVL55_RS06895 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS06895 SM00448 cheY-homologous receiver domain AVL55_RS06900 SM01321 AVL55_RS06900 AVL55_RS06905 SM00028 Tetratricopeptide repeats AVL55_RS06915 SM00859 Semialdehyde dehydrogenase, NAD binding domain AVL55_RS06925 SM00267 diguanylate cyclase AVL55_RS06935 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_RS06975 SM00267 diguanylate cyclase AVL55_RS07040 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_RS07040 SM00876 Biotin and Thiamin Synthesis associated domain AVL55_RS07065 SM00226 Low molecular weight phosphatase family AVL55_RS07075 SM00382 ATPases associated with a variety of cellular activities AVL55_RS07085 SM00387 Histidine kinase-like ATPases AVL55_RS07085 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS07090 SM00448 cheY-homologous receiver domain AVL55_RS07090 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS07115 SM00382 ATPases associated with a variety of cellular activities AVL55_RS07125 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_RS07135 SM00028 Tetratricopeptide repeats AVL55_RS07135 SM00448 cheY-homologous receiver domain AVL55_RS07200 SM01321 AVL55_RS07200 AVL55_RS07210 SM00382 ATPases associated with a variety of cellular activities AVL55_RS07225 SM00905 Dihydroneopterin aldolase AVL55_RS07235 SM00387 Histidine kinase-like ATPases AVL55_RS07240 SM00448 cheY-homologous receiver domain AVL55_RS07240 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS07290 SM00481 DNA polymerase alpha chain like domain AVL55_RS07310 SM00363 S4 RNA-binding domain AVL55_RS07320 SM01266 AVL55_RS07320 AVL55_RS07395 SM00421 helix_turn_helix, Lux Regulon AVL55_RS07395 SM00448 cheY-homologous receiver domain AVL55_RS07405 SM00387 Histidine kinase-like ATPases AVL55_RS07405 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS07405 SM00448 cheY-homologous receiver domain AVL55_RS07420 SM00271 DnaJ molecular chaperone homology domain AVL55_RS07430 SM00052 Putative diguanylate phosphodiesterase AVL55_RS07430 SM00091 PAS domain AVL55_RS07450 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AVL55_RS07455 SM00851 MGS-like domain AVL55_RS07455 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AVL55_RS07505 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_RS07505 SM01091 Transporter associated domain AVL55_RS07520 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_RS07550 SM00903 Flavin reductase like domain AVL55_RS07610 SM00829 Enoylreductase AVL55_RS07620 SM01400 AVL55_RS07620 AVL55_RS07645 SM00937 AVL55_RS07645 AVL55_RS07655 SM00448 cheY-homologous receiver domain AVL55_RS07695 SM00838 Elongation factor G C-terminus AVL55_RS07695 SM00889 Elongation factor G, domain IV AVL55_RS07700 SM01116 AVL55_RS07700 AVL55_RS07705 SM00219 Tyrosine kinase, catalytic domain AVL55_RS07705 SM00331 Sigma factor PP2C-like phosphatases AVL55_RS07705 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AVL55_RS07715 SM00460 Transglutaminase/protease-like homologues AVL55_RS07745 SM00052 Putative diguanylate phosphodiesterase AVL55_RS07745 SM00267 diguanylate cyclase AVL55_RS07825 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL55_RS07855 SM00369 Leucine-rich repeats, typical (most populated) subfamily AVL55_RS07900 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_RS07920 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_RS07920 SM00091 PAS domain AVL55_RS07920 SM00267 diguanylate cyclase AVL55_RS07950 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_RS07955 SM01092 CO dehydrogenase flavoprotein C-terminal domain AVL55_RS07995 SM00267 diguanylate cyclase AVL55_RS07995 SM00448 cheY-homologous receiver domain AVL55_RS08000 SM00387 Histidine kinase-like ATPases AVL55_RS08000 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS08000 SM00448 cheY-homologous receiver domain AVL55_RS08090 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AVL55_RS08160 SM00052 Putative diguanylate phosphodiesterase AVL55_RS08160 SM00267 diguanylate cyclase AVL55_RS08215 SM00710 Parallel beta-helix repeats AVL55_RS08250 SM00873 B3/4 domain AVL55_RS08250 SM00874 tRNA synthetase B5 domain AVL55_RS08250 SM00896 Ferredoxin-fold anticodon binding domain AVL55_RS08255 SM00411 bacterial (prokaryotic) histone like domain AVL55_RS08300 SM00487 DEAD-like helicases superfamily AVL55_RS08300 SM00490 helicase superfamily c-terminal domain AVL55_RS08300 SM00982 AVL55_RS08300 AVL55_RS08300 SM01058 CarD-like/TRCF domain AVL55_RS08400 SM00878 Biotin carboxylase C-terminal domain AVL55_RS08420 SM00422 helix_turn_helix, mercury resistance AVL55_RS08440 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_RS08440 SM00267 diguanylate cyclase AVL55_RS08450 SM00479 AVL55_RS08450 AVL55_RS08455 SM00387 Histidine kinase-like ATPases AVL55_RS08455 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS08455 SM00448 cheY-homologous receiver domain AVL55_RS08465 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_RS08480 SM00267 diguanylate cyclase AVL55_RS08485 SM00342 helix_turn_helix, arabinose operon control protein AVL55_RS08495 SM00382 ATPases associated with a variety of cellular activities AVL55_RS08495 SM00487 DEAD-like helicases superfamily AVL55_RS08495 SM00490 helicase superfamily c-terminal domain AVL55_RS08495 SM00847 Helicase associated domain (HA2) Add an annotation AVL55_RS08510 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AVL55_RS08515 SM00829 Enoylreductase AVL55_RS08525 SM00479 AVL55_RS08525 AVL55_RS08550 SM00052 Putative diguanylate phosphodiesterase AVL55_RS08555 SM00382 ATPases associated with a variety of cellular activities AVL55_RS08570 SM00634 Bacterial Ig-like domain (group 1) AVL55_RS08580 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AVL55_RS08580 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AVL55_RS08580 SM00493 AVL55_RS08580 AVL55_RS08620 SM00448 cheY-homologous receiver domain AVL55_RS08620 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS08625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS08625 SM00387 Histidine kinase-like ATPases AVL55_RS08625 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS08630 SM00587 ZnF_C4 abd HLH domain containing kinases domain AVL55_RS08635 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_RS08640 SM00363 S4 RNA-binding domain AVL55_RS08675 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AVL55_RS08680 SM00822 AVL55_RS08680 AVL55_RS08690 SM00825 Beta-ketoacyl synthase AVL55_RS08730 SM00267 diguanylate cyclase AVL55_RS08840 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_RS08840 SM00091 PAS domain AVL55_RS08840 SM00387 Histidine kinase-like ATPases AVL55_RS08840 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS08840 SM00448 cheY-homologous receiver domain AVL55_RS08845 SM00448 cheY-homologous receiver domain AVL55_RS08845 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_RS08855 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_RS08875 SM01387 AVL55_RS08875 AVL55_RS08880 SM00363 S4 RNA-binding domain AVL55_RS08895 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL55_RS08900 SM00448 cheY-homologous receiver domain AVL55_RS08955 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_RS08990 SM00382 ATPases associated with a variety of cellular activities AVL55_RS09020 SM00347 helix_turn_helix multiple antibiotic resistance protein AVL55_RS09035 SM00028 Tetratricopeptide repeats AVL55_RS09050 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_RS09075 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AVL55_RS09080 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AVL55_RS09110 SM00357 Cold shock protein domain AVL55_RS09120 SM00382 ATPases associated with a variety of cellular activities AVL55_RS09120 SM01086 C-terminal, D2-small domain, of ClpB protein AVL55_RS09125 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_RS09150 SM00731 SprT homologues. AVL55_RS09180 SM00870 AVL55_RS09180 AVL55_RS09185 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_RS09200 SM00936 Penicillin-binding protein 5, C-terminal domain AVL55_RS09275 SM01103 AVL55_RS09275 AVL55_RS09285 SM00382 ATPases associated with a variety of cellular activities AVL55_RS09315 SM00052 Putative diguanylate phosphodiesterase AVL55_RS09315 SM00267 diguanylate cyclase AVL55_RS09315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS09325 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AVL55_RS09330 SM00046 Diacylglycerol kinase catalytic domain (presumed) AVL55_RS09330 SM00195 Dual specificity phosphatase, catalytic domain AVL55_RS09330 SM00404 Protein tyrosine phosphatase, catalytic domain motif AVL55_RS09380 SM00507 HNH nucleases AVL55_RS09385 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_RS09385 SM00322 K homology RNA-binding domain AVL55_RS09455 SM00028 Tetratricopeptide repeats AVL55_RS09475 SM00771 ZipA, C-terminal domain (FtsZ-binding) AVL55_RS09480 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL55_RS09480 SM00292 breast cancer carboxy-terminal domain AVL55_RS09480 SM00532 Ligase N family AVL55_RS09495 SM00849 Metallo-beta-lactamase superfamily AVL55_RS09500 SM00382 ATPases associated with a variety of cellular activities AVL55_RS09525 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_RS09600 SM00861 Transketolase, pyrimidine binding domain AVL55_RS09615 SM00881 CoA binding domain AVL55_RS09660 SM00642 Alpha-amylase domain AVL55_RS09665 SM00642 Alpha-amylase domain AVL55_RS09675 SM00642 Alpha-amylase domain AVL55_RS09680 SM00354 helix_turn _helix lactose operon repressor AVL55_RS09795 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL55_RS09810 SM00387 Histidine kinase-like ATPases AVL55_RS09815 SM00448 cheY-homologous receiver domain AVL55_RS09815 SM00850 LytTr DNA-binding domain AVL55_RS09835 SM00028 Tetratricopeptide repeats AVL55_RS09835 SM00448 cheY-homologous receiver domain AVL55_RS09845 SM00450 Rhodanese Homology Domain AVL55_RS09850 SM00054 EF-hand, calcium binding motif AVL55_RS09865 SM00829 Enoylreductase AVL55_RS09870 SM00822 AVL55_RS09870 AVL55_RS09925 SM00382 ATPases associated with a variety of cellular activities AVL55_RS09950 SM00487 DEAD-like helicases superfamily AVL55_RS09950 SM00490 helicase superfamily c-terminal domain AVL55_RS09955 SM00882 Coenzyme A transferase AVL55_RS09960 SM00882 Coenzyme A transferase AVL55_RS09975 SM00387 Histidine kinase-like ATPases AVL55_RS10020 SM00861 Transketolase, pyrimidine binding domain AVL55_RS10035 SM00220 Serine/Threonine protein kinases, catalytic domain AVL55_RS10070 SM00945 ProQ/FINO family AVL55_RS10075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AVL55_RS10075 SM00245 tail specific protease AVL55_RS10130 SM00981 AVL55_RS10130 AVL55_RS10140 SM00382 ATPases associated with a variety of cellular activities AVL55_RS10200 SM00470 ParB-like nuclease domain AVL55_RS10215 SM00382 ATPases associated with a variety of cellular activities AVL55_RS10225 SM00857 Resolvase, N terminal domain AVL55_RS10260 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS10275 SM00470 ParB-like nuclease domain AVL55_RS10355 SM00267 diguanylate cyclase AVL55_RS10375 SM00052 Putative diguanylate phosphodiesterase AVL55_RS10580 SM00894 Excalibur calcium-binding domain AVL55_RS10775 SM00100 Cyclic nucleotide-monophosphate binding domain AVL55_RS10775 SM00419 helix_turn_helix, cAMP Regulatory protein AVL55_RS10820 SM00450 Rhodanese Homology Domain AVL55_RS10830 SM01144 AVL55_RS10830 AVL55_RS10855 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AVL55_RS10855 SM00465 GIY-YIG type nucleases (URI domain) AVL55_RS10860 SM00421 helix_turn_helix, Lux Regulon AVL55_RS10860 SM00448 cheY-homologous receiver domain AVL55_RS10965 SM00382 ATPases associated with a variety of cellular activities AVL55_RS10975 SM00843 AVL55_RS10975 AVL55_RS10980 SM00344 helix_turn_helix ASNC type AVL55_RS10985 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AVL55_RS10985 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AVL55_RS10990 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AVL55_RS10995 SM00028 Tetratricopeptide repeats AVL55_RS11010 SM00411 bacterial (prokaryotic) histone like domain AVL55_RS11015 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_RS11035 SM00434 DNA Topoisomerase IV AVL55_RS11205 SM00822 AVL55_RS11205 AVL55_RS11220 SM00052 Putative diguanylate phosphodiesterase AVL55_RS11240 SM01130 AVL55_RS11240 AVL55_RS11325 SM00421 helix_turn_helix, Lux Regulon AVL55_RS11325 SM00448 cheY-homologous receiver domain AVL55_RS11355 SM00642 Alpha-amylase domain AVL55_RS11365 SM00852 Probable molybdopterin binding domain AVL55_RS11385 SM00382 ATPases associated with a variety of cellular activities AVL55_RS11455 SM00342 helix_turn_helix, arabinose operon control protein AVL55_RS11490 SM00893 Electron transfer flavoprotein domain AVL55_RS11495 SM00893 Electron transfer flavoprotein domain AVL55_RS11505 SM00528 Domain in histone-like proteins of HNS family AVL55_RS11530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS11530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS11545 SM00797 Allophanate hydrolase subunit 2 AVL55_RS11550 SM00796 Allophanate hydrolase subunit 1 AVL55_RS11600 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_RS11605 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_RS11635 SM00829 Enoylreductase AVL55_RS11650 SM00855 Phosphoglycerate mutase family AVL55_RS11675 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_RS11680 SM00382 ATPases associated with a variety of cellular activities AVL55_RS11710 SM00852 Probable molybdopterin binding domain AVL55_RS11735 SM00344 helix_turn_helix ASNC type AVL55_RS11800 SM00871 Bacterial transcription activator, effector binding domain AVL55_RS11895 SM00382 ATPases associated with a variety of cellular activities AVL55_RS11935 SM00052 Putative diguanylate phosphodiesterase AVL55_RS11935 SM00267 diguanylate cyclase AVL55_RS11940 SM00849 Metallo-beta-lactamase superfamily AVL55_RS11970 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AVL55_RS11990 SM00382 ATPases associated with a variety of cellular activities AVL55_RS11990 SM00448 cheY-homologous receiver domain AVL55_RS12000 SM00387 Histidine kinase-like ATPases AVL55_RS12000 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS12005 SM00448 cheY-homologous receiver domain AVL55_RS12010 SM00387 Histidine kinase-like ATPases AVL55_RS12010 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS12010 SM00448 cheY-homologous receiver domain AVL55_RS12070 SM00631 AVL55_RS12070 AVL55_RS12075 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_RS12090 SM01350 AVL55_RS12090 AVL55_RS12095 SM00642 Alpha-amylase domain AVL55_RS12100 SM00642 Alpha-amylase domain AVL55_RS12110 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AVL55_RS12175 SM00749 bacterial OsmY and nodulation domain AVL55_RS12215 SM00387 Histidine kinase-like ATPases AVL55_RS12215 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS12215 SM00448 cheY-homologous receiver domain AVL55_RS12280 SM01060 AVL55_RS12280 AVL55_RS12325 SM00422 helix_turn_helix, mercury resistance AVL55_RS12355 SM00422 helix_turn_helix, mercury resistance AVL55_RS12445 SM00849 Metallo-beta-lactamase superfamily AVL55_RS12450 SM00257 Lysin motif AVL55_RS12460 SM00840 AVL55_RS12460 AVL55_RS12475 SM00098 Alkaline phosphatase homologues AVL55_RS12480 SM00098 Alkaline phosphatase homologues AVL55_RS12495 SM00244 prohibitin homologues AVL55_RS12500 SM00642 Alpha-amylase domain AVL55_RS12510 SM00829 Enoylreductase AVL55_RS12515 SM00829 Enoylreductase AVL55_RS12585 SM00859 Semialdehyde dehydrogenase, NAD binding domain AVL55_RS12595 SM01007 Class II Aldolase and Adducin N-terminal domain AVL55_RS12600 SM00100 Cyclic nucleotide-monophosphate binding domain AVL55_RS12600 SM00419 helix_turn_helix, cAMP Regulatory protein AVL55_RS12650 SM00825 Beta-ketoacyl synthase AVL55_RS12705 SM00382 ATPases associated with a variety of cellular activities AVL55_RS12720 SM00342 helix_turn_helix, arabinose operon control protein AVL55_RS12740 SM00387 Histidine kinase-like ATPases AVL55_RS12740 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS12740 SM00448 cheY-homologous receiver domain AVL55_RS12855 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL55_RS12895 SM00341 Helicase and RNase D C-terminal AVL55_RS12895 SM00474 3'-5' exonuclease AVL55_RS12925 SM00487 DEAD-like helicases superfamily AVL55_RS12925 SM00488 AVL55_RS12925 AVL55_RS12925 SM00491 AVL55_RS12925 AVL55_RS12960 SM00014 Acid phosphatase homologues AVL55_RS12975 SM00642 Alpha-amylase domain AVL55_RS13085 SM00387 Histidine kinase-like ATPases AVL55_RS13090 SM00493 AVL55_RS13090 AVL55_RS13115 SM00382 ATPases associated with a variety of cellular activities AVL55_RS13155 SM00382 ATPases associated with a variety of cellular activities AVL55_RS13165 SM00850 LytTr DNA-binding domain AVL55_RS13210 SM00028 Tetratricopeptide repeats AVL55_RS13240 SM00382 ATPases associated with a variety of cellular activities AVL55_RS13240 SM01086 C-terminal, D2-small domain, of ClpB protein AVL55_RS13250 SM00363 S4 RNA-binding domain AVL55_RS13320 SM00861 Transketolase, pyrimidine binding domain AVL55_RS13375 SM00382 ATPases associated with a variety of cellular activities AVL55_RS13385 SM00382 ATPases associated with a variety of cellular activities AVL55_RS13420 SM00358 Double-stranded RNA binding motif AVL55_RS13420 SM00535 Ribonuclease III family AVL55_RS13430 SM00838 Elongation factor G C-terminus AVL55_RS13485 SM00938 Nitrogen regulatory protein P-II AVL55_RS13570 SM00904 Riboflavin kinase AVL55_RS13615 SM00563 Phosphate acyltransferases AVL55_RS13630 SM00411 bacterial (prokaryotic) histone like domain AVL55_RS13635 SM00382 ATPases associated with a variety of cellular activities AVL55_RS13635 SM00464 Found in ATP-dependent protease La (LON) AVL55_RS13640 SM00382 ATPases associated with a variety of cellular activities AVL55_RS13640 SM00994 ClpX C4-type zinc finger AVL55_RS13640 SM01086 C-terminal, D2-small domain, of ClpB protein AVL55_RS13720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS13730 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_RS13730 SM01240 AVL55_RS13730 AVL55_RS13750 SM00382 ATPases associated with a variety of cellular activities AVL55_RS13755 SM00564 beta-propeller repeat AVL55_RS13760 SM00028 Tetratricopeptide repeats AVL55_RS13775 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS13780 SM00028 Tetratricopeptide repeats AVL55_RS13780 SM00257 Lysin motif AVL55_RS13790 SM00562 AVL55_RS13790 AVL55_RS13820 SM00382 ATPases associated with a variety of cellular activities AVL55_RS13870 SM01323 AVL55_RS13870 AVL55_RS13935 SM00382 ATPases associated with a variety of cellular activities AVL55_RS13955 SM00098 Alkaline phosphatase homologues AVL55_RS13960 SM00260 Two component signalling adaptor domain AVL55_RS13960 SM00448 cheY-homologous receiver domain AVL55_RS14105 SM00710 Parallel beta-helix repeats AVL55_RS14160 SM00382 ATPases associated with a variety of cellular activities AVL55_RS14165 SM00465 GIY-YIG type nucleases (URI domain) AVL55_RS14220 SM00729 Elongator protein 3, MiaB family, Radical SAM AVL55_RS14250 SM00382 ATPases associated with a variety of cellular activities AVL55_RS14265 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_RS14270 SM00564 beta-propeller repeat AVL55_RS14290 SM00267 diguanylate cyclase AVL55_RS14295 SM00996 S-adenosyl-L-homocysteine hydrolase AVL55_RS14295 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AVL55_RS14345 SM00886 Stress responsive A/B Barrel Domain AVL55_RS14410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL55_RS14410 SM00382 ATPases associated with a variety of cellular activities AVL55_RS14430 SM00052 Putative diguanylate phosphodiesterase AVL55_RS14430 SM00267 diguanylate cyclase AVL55_RS14445 SM00354 helix_turn _helix lactose operon repressor AVL55_RS14475 SM00967 RNA 2'-O ribose methyltransferase substrate binding AVL55_RS14630 SM01092 CO dehydrogenase flavoprotein C-terminal domain AVL55_RS14635 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AVL55_RS14655 SM00382 ATPases associated with a variety of cellular activities AVL55_RS14725 SM01322 AVL55_RS14725 AVL55_RS14835 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AVL55_RS14835 SM01232 AVL55_RS14835 AVL55_RS14850 SM00487 DEAD-like helicases superfamily AVL55_RS14850 SM00490 helicase superfamily c-terminal domain AVL55_RS14865 SM00028 Tetratricopeptide repeats AVL55_RS14865 SM00387 Histidine kinase-like ATPases AVL55_RS14865 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS14905 SM00988 UreE urease accessory protein, N-terminal domain AVL55_RS14930 SM00382 ATPases associated with a variety of cellular activities AVL55_RS14960 SM00387 Histidine kinase-like ATPases AVL55_RS14960 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS14960 SM00448 cheY-homologous receiver domain AVL55_RS14965 SM00421 helix_turn_helix, Lux Regulon AVL55_RS14965 SM00448 cheY-homologous receiver domain AVL55_RS15025 SM01011 Aminopeptidase P, N-terminal domain AVL55_RS15050 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AVL55_RS15050 SM00387 Histidine kinase-like ATPases AVL55_RS15050 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS15050 SM00448 cheY-homologous receiver domain AVL55_RS15130 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL55_RS15130 SM00895 AVL55_RS15130 AVL55_RS15140 SM00644 AVL55_RS15140 AVL55_RS15195 SM00957 SecA DEAD-like domain AVL55_RS15195 SM00958 SecA preprotein cross-linking domain AVL55_RS15210 SM00864 Tubulin/FtsZ family, GTPase domain AVL55_RS15210 SM00865 Tubulin/FtsZ family, C-terminal domain AVL55_RS15215 SM00842 Cell division protein FtsA AVL55_RS15340 SM00028 Tetratricopeptide repeats AVL55_RS15340 SM00267 diguanylate cyclase AVL55_RS15350 SM00382 ATPases associated with a variety of cellular activities AVL55_RS15350 SM00448 cheY-homologous receiver domain AVL55_RS15355 SM00387 Histidine kinase-like ATPases AVL55_RS15395 SM00732 Likely ribonuclease with RNase H fold. AVL55_RS15405 SM00382 ATPases associated with a variety of cellular activities AVL55_RS15490 SM00360 RNA recognition motif AVL55_RS15515 SM00986 Uracil DNA glycosylase superfamily AVL55_RS15515 SM00987 UreE urease accessory protein, C-terminal domain AVL55_RS15545 SM00829 Enoylreductase AVL55_RS15555 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AVL55_RS15560 SM00226 Low molecular weight phosphatase family AVL55_RS15575 SM00448 cheY-homologous receiver domain AVL55_RS15585 SM00448 cheY-homologous receiver domain AVL55_RS15585 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS15590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS15590 SM00387 Histidine kinase-like ATPases AVL55_RS15590 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS15630 SM00342 helix_turn_helix, arabinose operon control protein AVL55_RS15710 SM00421 helix_turn_helix, Lux Regulon AVL55_RS15710 SM00448 cheY-homologous receiver domain AVL55_RS15730 SM00345 helix_turn_helix gluconate operon transcriptional repressor AVL55_RS15730 SM00895 AVL55_RS15730 AVL55_RS15755 SM00267 diguanylate cyclase AVL55_RS15755 SM00448 cheY-homologous receiver domain AVL55_RS15775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_RS15775 SM00091 PAS domain AVL55_RS15775 SM00387 Histidine kinase-like ATPases AVL55_RS15775 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS15775 SM00448 cheY-homologous receiver domain AVL55_RS15820 SM00450 Rhodanese Homology Domain AVL55_RS15990 SM00448 cheY-homologous receiver domain AVL55_RS16000 SM01230 AVL55_RS16000 AVL55_RS16010 SM00091 PAS domain AVL55_RS16010 SM00387 Histidine kinase-like ATPases AVL55_RS16010 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS16015 SM00382 ATPases associated with a variety of cellular activities AVL55_RS16015 SM00448 cheY-homologous receiver domain AVL55_RS16020 SM00073 Histidine Phosphotransfer domain AVL55_RS16025 SM00563 Phosphate acyltransferases AVL55_RS16045 SM00244 prohibitin homologues AVL55_RS16055 SM00387 Histidine kinase-like ATPases AVL55_RS16055 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS16055 SM00448 cheY-homologous receiver domain AVL55_RS16055 SM01358 AVL55_RS16055 AVL55_RS16135 SM00448 cheY-homologous receiver domain AVL55_RS16145 SM00387 Histidine kinase-like ATPases AVL55_RS16145 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS16145 SM00448 cheY-homologous receiver domain AVL55_RS16160 SM00448 cheY-homologous receiver domain AVL55_RS16160 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS16165 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS16175 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS16190 SM00487 DEAD-like helicases superfamily AVL55_RS16240 SM00382 ATPases associated with a variety of cellular activities AVL55_RS16260 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS16275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS16280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS16280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS16315 SM00382 ATPases associated with a variety of cellular activities AVL55_RS16320 SM00382 ATPases associated with a variety of cellular activities AVL55_RS16325 SM00382 ATPases associated with a variety of cellular activities AVL55_RS16400 SM00421 helix_turn_helix, Lux Regulon AVL55_RS16400 SM00448 cheY-homologous receiver domain AVL55_RS16405 SM00091 PAS domain AVL55_RS16405 SM00387 Histidine kinase-like ATPases AVL55_RS16405 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS16405 SM00448 cheY-homologous receiver domain AVL55_RS16410 SM00897 FIST N domain AVL55_RS16410 SM01204 AVL55_RS16410 AVL55_RS16415 SM00900 AVL55_RS16415 AVL55_RS16425 SM00421 helix_turn_helix, Lux Regulon AVL55_RS16425 SM00448 cheY-homologous receiver domain AVL55_RS16435 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AVL55_RS16435 SM00091 PAS domain AVL55_RS16435 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS16470 SM00965 Secretin and TonB N terminus short domain AVL55_RS16495 SM00421 helix_turn_helix, Lux Regulon AVL55_RS16525 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AVL55_RS16530 SM00421 helix_turn_helix, Lux Regulon AVL55_RS16530 SM00448 cheY-homologous receiver domain AVL55_RS16535 SM00387 Histidine kinase-like ATPases AVL55_RS16545 SM00487 DEAD-like helicases superfamily AVL55_RS16545 SM00490 helicase superfamily c-terminal domain AVL55_RS16615 SM00155 Phospholipase D. Active site motifs. AVL55_RS16650 SM00849 Metallo-beta-lactamase superfamily AVL55_RS16655 SM00486 DNA polymerase type-B family AVL55_RS16695 SM00360 RNA recognition motif AVL55_RS16730 SM00986 Uracil DNA glycosylase superfamily AVL55_RS16730 SM00987 UreE urease accessory protein, C-terminal domain AVL55_RS16735 SM00052 Putative diguanylate phosphodiesterase AVL55_RS16735 SM00267 diguanylate cyclase AVL55_RS16735 SM00448 cheY-homologous receiver domain AVL55_RS16815 SM00173 Ras subfamily of RAS small GTPases AVL55_RS16815 SM00175 Rab subfamily of small GTPases AVL55_RS16820 SM00052 Putative diguanylate phosphodiesterase AVL55_RS16820 SM00267 diguanylate cyclase AVL55_RS16830 SM00563 Phosphate acyltransferases AVL55_RS16835 SM00563 Phosphate acyltransferases AVL55_RS16955 SM00849 Metallo-beta-lactamase superfamily AVL55_RS16975 SM00100 Cyclic nucleotide-monophosphate binding domain AVL55_RS17010 SM00354 helix_turn _helix lactose operon repressor AVL55_RS17015 SM00849 Metallo-beta-lactamase superfamily AVL55_RS17060 SM00900 AVL55_RS17060 AVL55_RS17140 SM00028 Tetratricopeptide repeats AVL55_RS17145 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AVL55_RS17155 SM00267 diguanylate cyclase AVL55_RS17155 SM00448 cheY-homologous receiver domain AVL55_RS17160 SM00479 AVL55_RS17160 AVL55_RS17165 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_RS17180 SM00387 Histidine kinase-like ATPases AVL55_RS17180 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS17180 SM00448 cheY-homologous receiver domain AVL55_RS17210 SM00421 helix_turn_helix, Lux Regulon AVL55_RS17210 SM00448 cheY-homologous receiver domain AVL55_RS17245 SM01321 AVL55_RS17245 AVL55_RS17265 SM00984 UDP binding domain AVL55_RS17490 SM00662 RNA polymerases D AVL55_RS17495 SM00363 S4 RNA-binding domain AVL55_RS17495 SM01390 AVL55_RS17495 AVL55_RS17560 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AVL55_RS17565 SM01374 AVL55_RS17565 AVL55_RS17580 SM00967 RNA 2'-O ribose methyltransferase substrate binding AVL55_RS17585 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_RS17585 SM00357 Cold shock protein domain AVL55_RS17585 SM00955 AVL55_RS17585 AVL55_RS17620 SM00671 Sel1-like repeats. AVL55_RS17645 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_RS17650 SM00387 Histidine kinase-like ATPases AVL55_RS17650 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS17650 SM00448 cheY-homologous receiver domain AVL55_RS17670 SM00344 helix_turn_helix ASNC type AVL55_RS17680 SM00357 Cold shock protein domain AVL55_RS17710 SM00448 cheY-homologous receiver domain AVL55_RS17730 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AVL55_RS17795 SM00382 ATPases associated with a variety of cellular activities AVL55_RS17800 SM00421 helix_turn_helix, Lux Regulon AVL55_RS17820 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS17825 SM00382 ATPases associated with a variety of cellular activities AVL55_RS17825 SM01086 C-terminal, D2-small domain, of ClpB protein AVL55_RS17835 SM00357 Cold shock protein domain AVL55_RS17850 SM00487 DEAD-like helicases superfamily AVL55_RS17850 SM00490 helicase superfamily c-terminal domain AVL55_RS17865 SM00919 Malic enzyme, NAD binding domain AVL55_RS17865 SM01274 AVL55_RS17865 AVL55_RS17915 SM00052 Putative diguanylate phosphodiesterase AVL55_RS17930 SM00382 ATPases associated with a variety of cellular activities AVL55_RS17935 SM00382 ATPases associated with a variety of cellular activities AVL55_RS17935 SM00962 SRP54-type protein, GTPase domain AVL55_RS17935 SM00963 SRP54-type protein, helical bundle domain AVL55_RS18010 SM00052 Putative diguanylate phosphodiesterase AVL55_RS18025 SM00382 ATPases associated with a variety of cellular activities AVL55_RS18030 SM00448 cheY-homologous receiver domain AVL55_RS18030 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS18035 SM00387 Histidine kinase-like ATPases AVL55_RS18035 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS18045 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_RS18095 SM00028 Tetratricopeptide repeats AVL55_RS18135 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AVL55_RS18190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS18220 SM00838 Elongation factor G C-terminus AVL55_RS18220 SM00889 Elongation factor G, domain IV AVL55_RS18235 SM00663 RNA polymerase I subunit A N-terminus AVL55_RS18260 SM00649 Ribosomal protein L11/L12 AVL55_RS18275 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AVL55_RS18275 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AVL55_RS18290 SM00382 ATPases associated with a variety of cellular activities AVL55_RS18315 SM00487 DEAD-like helicases superfamily AVL55_RS18315 SM00490 helicase superfamily c-terminal domain AVL55_RS18355 SM00642 Alpha-amylase domain AVL55_RS18390 SM00487 DEAD-like helicases superfamily AVL55_RS18390 SM00490 helicase superfamily c-terminal domain AVL55_RS18415 SM00841 Elongation factor P, C-terminal AVL55_RS18415 SM01185 AVL55_RS18415 AVL55_RS18495 SM00244 prohibitin homologues AVL55_RS18500 SM00244 prohibitin homologues AVL55_RS18520 SM01340 AVL55_RS18520 AVL55_RS18525 SM00257 Lysin motif AVL55_RS18525 SM00646 AVL55_RS18525 AVL55_RS18585 SM00382 ATPases associated with a variety of cellular activities AVL55_RS18615 SM00849 Metallo-beta-lactamase superfamily AVL55_RS18620 SM00448 cheY-homologous receiver domain AVL55_RS18620 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS18625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS18625 SM00387 Histidine kinase-like ATPases AVL55_RS18625 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS18670 SM00382 ATPases associated with a variety of cellular activities AVL55_RS18680 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS18685 SM00387 Histidine kinase-like ATPases AVL55_RS18690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AVL55_RS18705 SM00382 ATPases associated with a variety of cellular activities AVL55_RS18710 SM00382 ATPases associated with a variety of cellular activities AVL55_RS18735 SM00382 ATPases associated with a variety of cellular activities AVL55_RS18835 SM00116 Domain in cystathionine beta-synthase and other proteins. AVL55_RS18850 SM00867 YceI-like domain AVL55_RS18880 SM00829 Enoylreductase AVL55_RS18885 SM00267 diguanylate cyclase AVL55_RS18890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS18890 SM00387 Histidine kinase-like ATPases AVL55_RS18890 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS18890 SM00448 cheY-homologous receiver domain AVL55_RS18915 SM00487 DEAD-like helicases superfamily AVL55_RS18925 SM00487 DEAD-like helicases superfamily AVL55_RS18925 SM00490 helicase superfamily c-terminal domain AVL55_RS18950 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS18960 SM00420 helix_turn_helix, Deoxyribose operon repressor AVL55_RS18960 SM01134 AVL55_RS18960 AVL55_RS18975 SM00267 diguanylate cyclase AVL55_RS18990 SM00342 helix_turn_helix, arabinose operon control protein AVL55_RS18990 SM01009 AlkA N-terminal domain AVL55_RS19020 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AVL55_RS19020 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AVL55_RS19070 SM00965 Secretin and TonB N terminus short domain AVL55_RS19130 SM00346 helix_turn_helix isocitrate lyase regulation AVL55_RS19150 SM00883 Chaperonin 10 Kd subunit AVL55_RS19185 SM00878 Biotin carboxylase C-terminal domain AVL55_RS19205 SM00479 AVL55_RS19205 AVL55_RS19205 SM00990 AVL55_RS19205 AVL55_RS19235 SM00062 Bacterial periplasmic substrate-binding proteins AVL55_RS19255 SM00798 AICARFT/IMPCHase bienzyme AVL55_RS19255 SM00851 MGS-like domain AVL55_RS19265 SM01209 AVL55_RS19265 AVL55_RS19265 SM01210 AVL55_RS19265 AVL55_RS19270 SM00047 Lysozyme subfamily 2 AVL55_RS19295 SM00448 cheY-homologous receiver domain AVL55_RS19295 SM00862 Transcriptional regulatory protein, C terminal AVL55_RS19300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AVL55_RS19300 SM00387 Histidine kinase-like ATPases AVL55_RS19300 SM00388 His Kinase A (phosphoacceptor) domain AVL55_RS19325 SM00363 S4 RNA-binding domain AVL55_RS19340 SM00382 ATPases associated with a variety of cellular activities AVL55_RS19395 SM00849 Metallo-beta-lactamase superfamily AVL55_RS19425 SM00867 YceI-like domain AVL55_RS19460 SM00382 ATPases associated with a variety of cellular activities AVL55_RS19480 SM00320 WD40 repeats AVL55_RS19500 SM00316 Ribosomal protein S1-like RNA-binding domain AVL55_RS19500 SM00732 Likely ribonuclease with RNase H fold. AVL55_RS19530 SM00631 AVL55_RS19530 AVL55_RS19630 SM00563 Phosphate acyltransferases AVL55_RS19650 SM00382 ATPases associated with a variety of cellular activities AVL55_RS19715 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AVL55_RS19805 SM00530 Helix-turn-helix XRE-family like proteins AVL55_RS19810 SM00487 DEAD-like helicases superfamily AVL55_RS19820 SM00506 Appr-1"-p processing enzyme AVL55_RS19885 SM00422 helix_turn_helix, mercury resistance AVL55_RS19940 SM00354 helix_turn _helix lactose operon repressor AVL55_RS19960 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AVL55_RS19970 SM01144 AVL55_RS19970 AVL55_RS19995 SM00382 ATPases associated with a variety of cellular activities AVL55_RS20035 SM00470 ParB-like nuclease domain AVL55_RS20050 SM01228 AVL55_RS20050