locus-tag class description JN178_RS00005 PF11638 DnaA N-terminal domain JN178_RS00005 PF00308 Bacterial dnaA protein JN178_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix JN178_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JN178_RS00010 PF02767 DNA polymerase III beta subunit, central domain JN178_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JN178_RS00015 PF02463 RecF/RecN/SMC N terminal domain JN178_RS00020 PF00204 DNA gyrase B JN178_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus JN178_RS00020 PF18053 DNA gyrase B subunit insert domain JN178_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS00020 PF01751 Toprim domain JN178_RS00040 PF02092 Glycyl-tRNA synthetase beta subunit JN178_RS00040 PF05746 DALR anticodon binding domain JN178_RS00045 PF02091 Glycyl-tRNA synthetase alpha subunit JN178_RS00050 PF03352 Methyladenine glycosylase JN178_RS00060 PF04220 Der GTPase activator (YihI) JN178_RS00070 PF00034 Cytochrome c JN178_RS00075 PF01926 50S ribosome-binding GTPase JN178_RS00080 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JN178_RS00080 PF01612 3'-5' exonuclease JN178_RS00080 PF01367 5'-3' exonuclease, C-terminal SAM fold JN178_RS00080 PF00476 DNA polymerase family A JN178_RS00090 PF02386 Cation transport protein JN178_RS00095 PF02254 TrkA-N domain JN178_RS00095 PF02080 TrkA-C domain JN178_RS00100 PF01189 16S rRNA methyltransferase RsmB/F JN178_RS00100 PF01029 NusB family JN178_RS00105 PF02911 Formyl transferase, C-terminal domain JN178_RS00105 PF00551 Formyl transferase JN178_RS00110 PF01327 Polypeptide deformylase JN178_RS00120 PF02481 DNA recombination-mediator protein A JN178_RS00120 PF17782 DprA winged helix domain JN178_RS00125 PF04361 Protein of unknown function (DUF494) JN178_RS00135 PF01300 Telomere recombination JN178_RS00140 PF01218 Coproporphyrinogen III oxidase JN178_RS00145 PF03922 OmpW family JN178_RS00155 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JN178_RS00155 PF01488 Shikimate / quinate 5-dehydrogenase JN178_RS00155 PF08501 Shikimate dehydrogenase substrate binding domain JN178_RS00160 PF00132 Bacterial transferase hexapeptide (six repeats) JN178_RS00195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JN178_RS00195 PF01336 OB-fold nucleic acid binding domain JN178_RS00195 PF07733 Bacterial DNA polymerase III alpha NTPase domain JN178_RS00195 PF14579 Helix-hairpin-helix motif JN178_RS00195 PF02811 PHP domain JN178_RS00225 PF02225 PA domain JN178_RS00225 PF04389 Peptidase family M28 JN178_RS00230 PF01467 Cytidylyltransferase-like JN178_RS00230 PF00294 pfkB family carbohydrate kinase JN178_RS00235 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase JN178_RS00240 PF00440 Bacterial regulatory proteins, tetR family JN178_RS00245 PF04127 DNA / pantothenate metabolism flavoprotein JN178_RS00245 PF02441 Flavoprotein JN178_RS00250 PF04002 RadC-like JAB domain JN178_RS00265 PF06251 Capsule biosynthesis GfcC JN178_RS00270 PF06082 Exopolysaccharide biosynthesis protein YbjH JN178_RS00275 PF00830 Ribosomal L28 family JN178_RS00280 PF00471 Ribosomal protein L33 JN178_RS00290 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JN178_RS00290 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JN178_RS00290 PF06827 Zinc finger found in FPG and IleRS JN178_RS00295 PF01467 Cytidylyltransferase-like JN178_RS00305 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JN178_RS00320 PF00563 EAL domain JN178_RS00320 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS00320 PF03707 Bacterial signalling protein N terminal repeat JN178_RS00325 PF00155 Aminotransferase class I and II JN178_RS00330 PF00107 Zinc-binding dehydrogenase JN178_RS00330 PF08240 Alcohol dehydrogenase GroES-like domain JN178_RS00335 PF00581 Rhodanese-like domain JN178_RS00340 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JN178_RS00340 PF01694 Rhomboid family JN178_RS00350 PF04345 Chorismate lyase JN178_RS00355 PF01040 UbiA prenyltransferase family JN178_RS00370 PF04380 Membrane fusogenic activity JN178_RS00375 PF00580 UvrD/REP helicase N-terminal domain JN178_RS00375 PF13361 UvrD-like helicase C-terminal domain JN178_RS00380 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS00380 PF03707 Bacterial signalling protein N terminal repeat JN178_RS00380 PF00563 EAL domain JN178_RS00385 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JN178_RS00420 PF08241 Methyltransferase domain JN178_RS00435 PF08281 Sigma-70, region 4 JN178_RS00435 PF04542 Sigma-70 region 2 JN178_RS00440 PF13193 AMP-binding enzyme C-terminal domain JN178_RS00440 PF00501 AMP-binding enzyme JN178_RS00455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JN178_RS00455 PF00364 Biotin-requiring enzyme JN178_RS00455 PF00289 Biotin carboxylase, N-terminal domain JN178_RS00455 PF02785 Biotin carboxylase C-terminal domain JN178_RS00460 PF00378 Enoyl-CoA hydratase/isomerase JN178_RS00465 PF01039 Carboxyl transferase domain JN178_RS00470 PF03060 Nitronate monooxygenase JN178_RS00475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN178_RS00475 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS00475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS00485 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS00485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS00490 PF00072 Response regulator receiver domain JN178_RS00490 PF00158 Sigma-54 interaction domain JN178_RS00490 PF02954 Bacterial regulatory protein, Fis family JN178_RS00500 PF00005 ABC transporter JN178_RS00505 PF02687 FtsX-like permease family JN178_RS00505 PF12704 MacB-like periplasmic core domain JN178_RS00510 PF17158 Membrane-associated sensor, integral membrane domain JN178_RS00510 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS00515 PF00072 Response regulator receiver domain JN178_RS00515 PF00486 Transcriptional regulatory protein, C terminal JN178_RS00520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS00520 PF00672 HAMP domain JN178_RS00520 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS00530 PF17804 Tail specific protease N-terminal domain JN178_RS00530 PF03572 Peptidase family S41 JN178_RS00530 PF00595 PDZ domain JN178_RS00530 PF11818 C-terminal domain of tail specific protease (DUF3340) JN178_RS00540 PF07715 TonB-dependent Receptor Plug Domain JN178_RS00540 PF00593 TonB dependent receptor JN178_RS00550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN178_RS00550 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS00550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS00555 PF03466 LysR substrate binding domain JN178_RS00555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS00565 PF04317 YcjX-like family, DUF463 JN178_RS00585 PF04055 Radical SAM superfamily JN178_RS00585 PF06968 Biotin and Thiamin Synthesis associated domain JN178_RS00590 PF05690 Thiazole biosynthesis protein ThiG JN178_RS00600 PF00899 ThiF family JN178_RS00605 PF02581 Thiamine monophosphate synthase JN178_RS00610 PF13667 ThiC-associated domain JN178_RS00610 PF01964 Radical SAM ThiC family JN178_RS00615 PF07219 HemY protein N-terminus JN178_RS00615 PF07719 Tetratricopeptide repeat JN178_RS00620 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JN178_RS00625 PF02602 Uroporphyrinogen-III synthase HemD JN178_RS00630 PF03900 Porphobilinogen deaminase, C-terminal domain JN178_RS00630 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JN178_RS00635 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS00635 PF00072 Response regulator receiver domain JN178_RS00645 PF00625 Guanylate kinase JN178_RS00650 PF01192 RNA polymerase Rpb6 JN178_RS00655 PF13291 ACT domain JN178_RS00655 PF04607 Region found in RelA / SpoT proteins JN178_RS00655 PF02824 TGS domain JN178_RS00660 PF01042 Endoribonuclease L-PSP JN178_RS00665 PF00588 SpoU rRNA Methylase family JN178_RS00665 PF12105 SpoU, rRNA methylase, C-terminal JN178_RS00680 PF17191 RecG wedge domain JN178_RS00680 PF00270 DEAD/DEAH box helicase JN178_RS00680 PF00271 Helicase conserved C-terminal domain JN178_RS00685 PF04445 Putative SAM-dependent methyltransferase JN178_RS00690 PF08534 Redoxin JN178_RS00705 PF00528 Binding-protein-dependent transport system inner membrane component JN178_RS00710 PF00005 ABC transporter JN178_RS00710 PF08402 TOBE domain JN178_RS00740 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS00750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS00750 PF03466 LysR substrate binding domain JN178_RS00755 PF01810 LysE type translocator JN178_RS00770 PF00529 HlyD membrane-fusion protein of T1SS JN178_RS00770 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN178_RS00775 PF00873 AcrB/AcrD/AcrF family JN178_RS00785 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JN178_RS00785 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JN178_RS00790 PF00850 Histone deacetylase domain JN178_RS00805 PF02743 Cache domain JN178_RS00805 PF00672 HAMP domain JN178_RS00805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS00815 PF11737 Protein of unknown function (DUF3300) JN178_RS00820 PF00925 GTP cyclohydrolase II JN178_RS00825 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS00825 PF00563 EAL domain JN178_RS00825 PF08448 PAS fold JN178_RS00840 PF16124 RecQ zinc-binding JN178_RS00840 PF00270 DEAD/DEAH box helicase JN178_RS00840 PF00271 Helicase conserved C-terminal domain JN178_RS00840 PF00570 HRDC domain JN178_RS00840 PF09382 RQC domain JN178_RS00845 PF03061 Thioesterase superfamily JN178_RS00850 PF03448 MgtE intracellular N domain JN178_RS00850 PF01769 Divalent cation transporter JN178_RS00850 PF00571 CBS domain JN178_RS00855 PF00892 EamA-like transporter family JN178_RS00860 PF00072 Response regulator receiver domain JN178_RS00860 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS00865 PF00580 UvrD/REP helicase N-terminal domain JN178_RS00865 PF13361 UvrD-like helicase C-terminal domain JN178_RS00870 PF06426 Serine acetyltransferase, N-terminal JN178_RS00870 PF00132 Bacterial transferase hexapeptide (six repeats) JN178_RS00875 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS00880 PF13419 Haloacid dehalogenase-like hydrolase JN178_RS00885 PF02899 Phage integrase, N-terminal SAM-like domain JN178_RS00885 PF00589 Phage integrase family JN178_RS00895 PF01678 Diaminopimelate epimerase JN178_RS00900 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JN178_RS00900 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JN178_RS00915 PF01569 PAP2 superfamily JN178_RS00920 PF03737 Aldolase/RraA JN178_RS00930 PF02441 Flavoprotein JN178_RS00935 PF08245 Mur ligase middle domain JN178_RS00935 PF02875 Mur ligase family, glutamate ligase domain JN178_RS00935 PF01225 Mur ligase family, catalytic domain JN178_RS00940 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JN178_RS00945 PF00719 Inorganic pyrophosphatase JN178_RS00955 PF00155 Aminotransferase class I and II JN178_RS00955 PF00392 Bacterial regulatory proteins, gntR family JN178_RS00960 PF00701 Dihydrodipicolinate synthetase family JN178_RS00980 PF00106 short chain dehydrogenase JN178_RS00985 PF00005 ABC transporter JN178_RS00985 PF02687 FtsX-like permease family JN178_RS00985 PF12704 MacB-like periplasmic core domain JN178_RS00990 PF02687 FtsX-like permease family JN178_RS00990 PF00005 ABC transporter JN178_RS00990 PF12704 MacB-like periplasmic core domain JN178_RS00995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN178_RS01010 PF00005 ABC transporter JN178_RS01035 PF03472 Autoinducer binding domain JN178_RS01035 PF00196 Bacterial regulatory proteins, luxR family JN178_RS01060 PF17755 UvrA DNA-binding domain JN178_RS01060 PF17760 UvrA interaction domain JN178_RS01060 PF00005 ABC transporter JN178_RS01065 PF07690 Major Facilitator Superfamily JN178_RS01070 PF13419 Haloacid dehalogenase-like hydrolase JN178_RS01085 PF00356 Bacterial regulatory proteins, lacI family JN178_RS01090 PF01263 Aldose 1-epimerase JN178_RS01095 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JN178_RS01095 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JN178_RS01100 PF00288 GHMP kinases N terminal domain JN178_RS01100 PF10509 Galactokinase galactose-binding signature JN178_RS01100 PF08544 GHMP kinases C terminal JN178_RS01105 PF00474 Sodium:solute symporter family JN178_RS01110 PF00436 Single-strand binding protein family JN178_RS01130 PF16875 Glycosyl hydrolase family 36 N-terminal domain JN178_RS01130 PF16874 Glycosyl hydrolase family 36 C-terminal domain JN178_RS01135 PF00474 Sodium:solute symporter family JN178_RS01145 PF04820 Tryptophan halogenase JN178_RS01155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JN178_RS01155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JN178_RS01160 PF00455 DeoR C terminal sensor domain JN178_RS01160 PF08220 DeoR-like helix-turn-helix domain JN178_RS01165 PF01266 FAD dependent oxidoreductase JN178_RS01165 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JN178_RS01185 PF04085 rod shape-determining protein MreC JN178_RS01190 PF04093 rod shape-determining protein MreD JN178_RS01195 PF02545 Maf-like protein JN178_RS01200 PF10150 Ribonuclease E/G family JN178_RS01200 PF00575 S1 RNA binding domain JN178_RS01210 PF00795 Carbon-nitrogen hydrolase JN178_RS01215 PF01523 Putative modulator of DNA gyrase JN178_RS01230 PF09308 LuxQ, periplasmic JN178_RS01230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS01230 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS01230 PF00072 Response regulator receiver domain JN178_RS01235 PF04751 Protein of unknown function (DUF615) JN178_RS01240 PF01523 Putative modulator of DNA gyrase JN178_RS01245 PF12833 Helix-turn-helix domain JN178_RS01250 PF16353 Domain of unknown function(DUF4981) JN178_RS01250 PF02929 Beta galactosidase small chain JN178_RS01250 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JN178_RS01250 PF02837 Glycosyl hydrolases family 2, sugar binding domain JN178_RS01250 PF00703 Glycosyl hydrolases family 2 JN178_RS01255 PF00072 Response regulator receiver domain JN178_RS01255 PF00486 Transcriptional regulatory protein, C terminal JN178_RS01260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS01260 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS01260 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN178_RS01265 PF08323 Starch synthase catalytic domain JN178_RS01265 PF00534 Glycosyl transferases group 1 JN178_RS01270 PF08468 Methyltransferase small domain N-terminal JN178_RS01270 PF05175 Methyltransferase small domain JN178_RS01275 PF02390 Putative methyltransferase JN178_RS01285 PF00633 Helix-hairpin-helix motif JN178_RS01285 PF00730 HhH-GPD superfamily base excision DNA repair protein JN178_RS01285 PF14815 NUDIX domain JN178_RS01290 PF04362 Bacterial Fe(2+) trafficking JN178_RS01310 PF00672 HAMP domain JN178_RS01310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS01310 PF02743 Cache domain JN178_RS01315 PF00072 Response regulator receiver domain JN178_RS01320 PF01627 Hpt domain JN178_RS01320 PF02895 Signal transducing histidine kinase, homodimeric domain JN178_RS01320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS01320 PF09078 CheY binding JN178_RS01320 PF01584 CheW-like domain JN178_RS01325 PF01584 CheW-like domain JN178_RS01335 PF13419 Haloacid dehalogenase-like hydrolase JN178_RS01345 PF00356 Bacterial regulatory proteins, lacI family JN178_RS01345 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JN178_RS01355 PF01204 Trehalase JN178_RS01360 PF08281 Sigma-70, region 4 JN178_RS01360 PF04542 Sigma-70 region 2 JN178_RS01375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS01375 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS01375 PF09308 LuxQ, periplasmic JN178_RS01375 PF00072 Response regulator receiver domain JN178_RS01390 PF13419 Haloacid dehalogenase-like hydrolase JN178_RS01400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS01400 PF09456 RcsC Alpha-Beta-Loop (ABL) JN178_RS01400 PF00072 Response regulator receiver domain JN178_RS01400 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS01415 PF00356 Bacterial regulatory proteins, lacI family JN178_RS01500 PF01063 Amino-transferase class IV JN178_RS01505 PF00300 Histidine phosphatase superfamily (branch 1) JN178_RS01515 PF00330 Aconitase family (aconitate hydratase) JN178_RS01515 PF00694 Aconitase C-terminal domain JN178_RS01520 PF00437 Type II/IV secretion system protein JN178_RS01520 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JN178_RS01525 PF00338 Ribosomal protein S10p/S20e JN178_RS01530 PF00297 Ribosomal protein L3 JN178_RS01535 PF00573 Ribosomal protein L4/L1 family JN178_RS01540 PF00276 Ribosomal protein L23 JN178_RS01545 PF00181 Ribosomal Proteins L2, RNA binding domain JN178_RS01545 PF03947 Ribosomal Proteins L2, C-terminal domain JN178_RS01550 PF00203 Ribosomal protein S19 JN178_RS01555 PF00237 Ribosomal protein L22p/L17e JN178_RS01560 PF00189 Ribosomal protein S3, C-terminal domain JN178_RS01560 PF07650 KH domain JN178_RS01565 PF00252 Ribosomal protein L16p/L10e JN178_RS01570 PF00831 Ribosomal L29 protein JN178_RS01575 PF00366 Ribosomal protein S17 JN178_RS01580 PF13439 Glycosyltransferase Family 4 JN178_RS01580 PF00534 Glycosyl transferases group 1 JN178_RS01590 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JN178_RS01610 PF02743 Cache domain JN178_RS01610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS01610 PF00672 HAMP domain JN178_RS01615 PF01432 Peptidase family M3 JN178_RS01630 PF01842 ACT domain JN178_RS01630 PF00551 Formyl transferase JN178_RS01640 PF08482 ATP-dependent helicase C-terminal JN178_RS01640 PF00270 DEAD/DEAH box helicase JN178_RS01640 PF04408 Helicase associated domain (HA2) JN178_RS01640 PF00271 Helicase conserved C-terminal domain JN178_RS01645 PF13406 Transglycosylase SLT domain JN178_RS01650 PF14814 Bifunctional transglycosylase second domain JN178_RS01650 PF00912 Transglycosylase JN178_RS01650 PF00905 Penicillin binding protein transpeptidase domain JN178_RS01660 PF05661 Protein of unknown function (DUF808) JN178_RS01680 PF00543 Nitrogen regulatory protein P-II JN178_RS01685 PF00909 Ammonium Transporter Family JN178_RS01695 PF04261 Dyp-type peroxidase family JN178_RS01700 PF00202 Aminotransferase class-III JN178_RS01705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JN178_RS01705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JN178_RS01715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN178_RS01720 PF00873 AcrB/AcrD/AcrF family JN178_RS01730 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JN178_RS01730 PF01627 Hpt domain JN178_RS01730 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS01730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS01730 PF00672 HAMP domain JN178_RS01730 PF00072 Response regulator receiver domain JN178_RS01735 PF03989 DNA gyrase C-terminal domain, beta-propeller JN178_RS01735 PF00521 DNA gyrase/topoisomerase IV, subunit A JN178_RS01745 PF03707 Bacterial signalling protein N terminal repeat JN178_RS01745 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS01745 PF00563 EAL domain JN178_RS01745 PF13188 PAS domain JN178_RS01755 PF00171 Aldehyde dehydrogenase family JN178_RS01760 PF04958 Arginine N-succinyltransferase beta subunit JN178_RS01765 PF00202 Aminotransferase class-III JN178_RS01775 PF00117 Glutamine amidotransferase class-I JN178_RS01780 PF00579 tRNA synthetases class I (W and Y) JN178_RS01785 PF00834 Ribulose-phosphate 3 epimerase family JN178_RS01805 PF02086 D12 class N6 adenine-specific DNA methyltransferase JN178_RS01815 PF01761 3-dehydroquinate synthase JN178_RS01820 PF01202 Shikimate kinase JN178_RS01825 PF03958 Bacterial type II/III secretion system short domain JN178_RS01825 PF00263 Bacterial type II and III secretion system protein JN178_RS01825 PF11741 AMIN domain JN178_RS01825 PF07660 Secretin and TonB N terminus short domain JN178_RS01835 PF04350 Pilus assembly protein, PilO JN178_RS01845 PF11104 Type IV pilus assembly protein PilM; JN178_RS01850 PF00905 Penicillin binding protein transpeptidase domain JN178_RS01850 PF00912 Transglycosylase JN178_RS01850 PF17092 Penicillin-binding protein OB-like domain JN178_RS01855 PF03949 Malic enzyme, NAD binding domain JN178_RS01855 PF00390 Malic enzyme, N-terminal domain JN178_RS01865 PF02798 Glutathione S-transferase, N-terminal domain JN178_RS01890 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS01890 PF03707 Bacterial signalling protein N terminal repeat JN178_RS01890 PF00563 EAL domain JN178_RS01895 PF00696 Amino acid kinase family JN178_RS01895 PF00583 Acetyltransferase (GNAT) family JN178_RS01900 PF00206 Lyase JN178_RS01900 PF14698 Argininosuccinate lyase C-terminal JN178_RS01905 PF00764 Arginosuccinate synthase JN178_RS01910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JN178_RS01910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JN178_RS01915 PF00696 Amino acid kinase family JN178_RS01920 PF01118 Semialdehyde dehydrogenase, NAD binding domain JN178_RS01920 PF02774 Semialdehyde dehydrogenase, dimerisation domain JN178_RS01925 PF02142 MGS-like domain JN178_RS01935 PF00486 Transcriptional regulatory protein, C terminal JN178_RS01935 PF00072 Response regulator receiver domain JN178_RS01940 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS01940 PF16527 Two-component sensor protein CpxA, periplasmic domain JN178_RS01940 PF00672 HAMP domain JN178_RS01940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS01945 PF12146 Serine aminopeptidase, S33 JN178_RS01950 PF00588 SpoU rRNA Methylase family JN178_RS01955 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JN178_RS01955 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JN178_RS01960 PF02556 Preprotein translocase subunit SecB JN178_RS01965 PF00462 Glutaredoxin JN178_RS01970 PF00581 Rhodanese-like domain JN178_RS01975 PF01551 Peptidase family M23 JN178_RS01980 PF04748 Divergent polysaccharide deacetylase JN178_RS01990 PF03009 Glycerophosphoryl diester phosphodiesterase family JN178_RS02000 PF02666 Phosphatidylserine decarboxylase JN178_RS02005 PF03193 RsgA GTPase JN178_RS02010 PF00929 Exonuclease JN178_RS02025 PF00593 TonB dependent receptor JN178_RS02025 PF07715 TonB-dependent Receptor Plug Domain JN178_RS02030 PF13181 Tetratricopeptide repeat JN178_RS02045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JN178_RS02045 PF00205 Thiamine pyrophosphate enzyme, central domain JN178_RS02045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JN178_RS02050 PF10369 Small subunit of acetolactate synthase JN178_RS02055 PF01979 Amidohydrolase family JN178_RS02060 PF03606 C4-dicarboxylate anaerobic carrier JN178_RS02065 PF07715 TonB-dependent Receptor Plug Domain JN178_RS02065 PF00593 TonB dependent receptor JN178_RS02070 PF03575 Peptidase family S51 JN178_RS02080 PF02416 mttA/Hcf106 family JN178_RS02085 PF02416 mttA/Hcf106 family JN178_RS02090 PF00902 Sec-independent protein translocase protein (TatC) JN178_RS02100 PF01026 TatD related DNase JN178_RS02105 PF00360 Phytochrome region JN178_RS02105 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS02105 PF00563 EAL domain JN178_RS02105 PF01590 GAF domain JN178_RS02110 PF00490 Delta-aminolevulinic acid dehydratase JN178_RS02115 PF02541 Ppx/GppA phosphatase family JN178_RS02120 PF00270 DEAD/DEAH box helicase JN178_RS02120 PF00271 Helicase conserved C-terminal domain JN178_RS02125 PF00085 Thioredoxin JN178_RS02130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JN178_RS02130 PF07498 Rho termination factor, N-terminal domain JN178_RS02130 PF07497 Rho termination factor, RNA-binding domain JN178_RS02135 PF01546 Peptidase family M20/M25/M40 JN178_RS02135 PF07687 Peptidase dimerisation domain JN178_RS02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS02140 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS02140 PF09308 LuxQ, periplasmic JN178_RS02140 PF00072 Response regulator receiver domain JN178_RS02145 PF06965 Na+/H+ antiporter 1 JN178_RS02150 PF00731 AIR carboxylase JN178_RS02155 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JN178_RS02155 PF02222 ATP-grasp domain JN178_RS02170 PF00210 Ferritin-like domain JN178_RS02175 PF07995 Glucose / Sorbosone dehydrogenase JN178_RS02180 PF00326 Prolyl oligopeptidase family JN178_RS02180 PF07676 WD40-like Beta Propeller Repeat JN178_RS02190 PF00085 Thioredoxin JN178_RS02205 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JN178_RS02210 PF00709 Adenylosuccinate synthetase JN178_RS02215 PF00171 Aldehyde dehydrogenase family JN178_RS02240 PF03553 Na+/H+ antiporter family JN178_RS02245 PF00933 Glycosyl hydrolase family 3 N terminal domain JN178_RS02255 PF07075 Protein of unknown function (DUF1343) JN178_RS02260 PF01380 SIS domain JN178_RS02265 PF01168 Alanine racemase, N-terminal domain JN178_RS02265 PF00842 Alanine racemase, C-terminal domain JN178_RS02280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JN178_RS02310 PF00464 Serine hydroxymethyltransferase JN178_RS02315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS02315 PF03466 LysR substrate binding domain JN178_RS02320 PF03831 PhnA domain JN178_RS02320 PF08274 PhnA Zinc-Ribbon JN178_RS02325 PF00583 Acetyltransferase (GNAT) family JN178_RS02450 PF01252 Signal peptidase (SPase) II JN178_RS02475 PF01548 Transposase JN178_RS02475 PF02371 Transposase IS116/IS110/IS902 family JN178_RS02505 PF02371 Transposase IS116/IS110/IS902 family JN178_RS02505 PF01548 Transposase JN178_RS02540 PF02371 Transposase IS116/IS110/IS902 family JN178_RS02540 PF01548 Transposase JN178_RS02545 PF00589 Phage integrase family JN178_RS02545 PF13495 Phage integrase, N-terminal SAM-like domain JN178_RS02550 PF02803 Thiolase, C-terminal domain JN178_RS02550 PF00108 Thiolase, N-terminal domain JN178_RS02555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JN178_RS02555 PF00378 Enoyl-CoA hydratase/isomerase JN178_RS02555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JN178_RS02560 PF01464 Transglycosylase SLT domain JN178_RS02560 PF10145 Phage-related minor tail protein JN178_RS02560 PF01551 Peptidase family M23 JN178_RS02565 PF00557 Metallopeptidase family M24 JN178_RS02575 PF00348 Polyprenyl synthetase JN178_RS02580 PF00829 Ribosomal prokaryotic L21 protein JN178_RS02585 PF01016 Ribosomal L27 protein JN178_RS02590 PF01018 GTP1/OBG JN178_RS02590 PF01926 50S ribosome-binding GTPase JN178_RS02595 PF00186 Dihydrofolate reductase JN178_RS02600 PF04542 Sigma-70 region 2 JN178_RS02600 PF04539 Sigma-70 region 3 JN178_RS02600 PF00140 Sigma-70 factor, region 1.2 JN178_RS02600 PF04545 Sigma-70, region 4 JN178_RS02605 PF01551 Peptidase family M23 JN178_RS02605 PF01476 LysM domain JN178_RS02610 PF09335 SNARE associated Golgi protein JN178_RS02620 PF01142 tRNA pseudouridine synthase D (TruD) JN178_RS02625 PF02542 YgbB family JN178_RS02630 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JN178_RS02635 PF04977 Septum formation initiator JN178_RS02645 PF00672 HAMP domain JN178_RS02645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS02645 PF17200 Single Cache domain 2 JN178_RS02650 PF01037 Lrp/AsnC ligand binding domain JN178_RS02650 PF13404 AsnC-type helix-turn-helix domain JN178_RS02655 PF08240 Alcohol dehydrogenase GroES-like domain JN178_RS02655 PF00107 Zinc-binding dehydrogenase JN178_RS02660 PF14850 DNA-binding domain of Proline dehydrogenase JN178_RS02660 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JN178_RS02660 PF01619 Proline dehydrogenase JN178_RS02660 PF00171 Aldehyde dehydrogenase family JN178_RS02680 PF02976 DNA mismatch repair enzyme MutH JN178_RS02685 PF00293 NUDIX domain JN178_RS02690 PF01590 GAF domain JN178_RS02690 PF05524 PEP-utilising enzyme, N-terminal JN178_RS02690 PF00391 PEP-utilising enzyme, mobile domain JN178_RS02690 PF02896 PEP-utilising enzyme, TIM barrel domain JN178_RS02695 PF01925 Sulfite exporter TauE/SafE JN178_RS02700 PF01790 Prolipoprotein diacylglyceryl transferase JN178_RS02705 PF00303 Thymidylate synthase JN178_RS02710 PF00072 Response regulator receiver domain JN178_RS02715 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS02715 PF05230 MASE2 domain JN178_RS02720 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JN178_RS02720 PF00072 Response regulator receiver domain JN178_RS02720 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS02720 PF00672 HAMP domain JN178_RS02720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS02720 PF01627 Hpt domain JN178_RS02725 PF07690 Major Facilitator Superfamily JN178_RS02740 PF00849 RNA pseudouridylate synthase JN178_RS02745 PF00271 Helicase conserved C-terminal domain JN178_RS02745 PF00176 SNF2 family N-terminal domain JN178_RS02745 PF18339 RapA N-terminal Tudor like domain 1 JN178_RS02745 PF12137 RNA polymerase recycling family C-terminal JN178_RS02745 PF18337 RapA N-terminal Tudor like domain JN178_RS02755 PF13638 PIN domain JN178_RS02755 PF02562 PhoH-like protein JN178_RS02760 PF00155 Aminotransferase class I and II JN178_RS02760 PF00392 Bacterial regulatory proteins, gntR family JN178_RS02765 PF13746 4Fe-4S dicluster domain JN178_RS02765 PF12801 4Fe-4S binding domain JN178_RS02765 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JN178_RS02775 PF10414 Sirohaem synthase dimerisation region JN178_RS02775 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JN178_RS02780 PF00270 DEAD/DEAH box helicase JN178_RS02780 PF00271 Helicase conserved C-terminal domain JN178_RS02780 PF03880 DbpA RNA binding domain JN178_RS02780 PF12343 Cold shock protein DEAD box A JN178_RS02800 PF02321 Outer membrane efflux protein JN178_RS02805 PF00293 NUDIX domain JN178_RS02820 PF05728 Uncharacterised protein family (UPF0227) JN178_RS02825 PF01751 Toprim domain JN178_RS02825 PF00204 DNA gyrase B JN178_RS02825 PF00986 DNA gyrase B subunit, carboxyl terminus JN178_RS02825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS02850 PF04055 Radical SAM superfamily JN178_RS02855 PF09285 Elongation factor P, C-terminal JN178_RS02855 PF01132 Elongation factor P (EF-P) OB domain JN178_RS02855 PF08207 Elongation factor P (EF-P) KOW-like domain JN178_RS02860 PF00152 tRNA synthetases class II (D, K and N) JN178_RS02865 PF07715 TonB-dependent Receptor Plug Domain JN178_RS02865 PF00593 TonB dependent receptor JN178_RS02880 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JN178_RS02885 PF05175 Methyltransferase small domain JN178_RS02900 PF01722 BolA-like protein JN178_RS02905 PF01569 PAP2 superfamily JN178_RS02915 PF03861 ANTAR domain JN178_RS02915 PF08376 Nitrate and nitrite sensing JN178_RS02925 PF00916 Sulfate permease family JN178_RS02925 PF01740 STAS domain JN178_RS02930 PF18267 Rubredoxin NAD+ reductase C-terminal domain JN178_RS02930 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JN178_RS02930 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS02930 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JN178_RS02930 PF04324 BFD-like [2Fe-2S] binding domain JN178_RS02935 PF13806 Rieske-like [2Fe-2S] domain JN178_RS02940 PF01568 Molydopterin dinucleotide binding domain JN178_RS02940 PF00384 Molybdopterin oxidoreductase JN178_RS02940 PF04324 BFD-like [2Fe-2S] binding domain JN178_RS02940 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JN178_RS02945 PF10414 Sirohaem synthase dimerisation region JN178_RS02945 PF14824 Sirohaem biosynthesis protein central JN178_RS02945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JN178_RS02950 PF00591 Glycosyl transferase family, a/b domain JN178_RS02950 PF02885 Glycosyl transferase family, helical bundle domain JN178_RS02960 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS02960 PF17158 Membrane-associated sensor, integral membrane domain JN178_RS02965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS02965 PF08447 PAS fold JN178_RS02965 PF13426 PAS domain JN178_RS02970 PF00005 ABC transporter JN178_RS02975 PF00528 Binding-protein-dependent transport system inner membrane component JN178_RS02980 PF00005 ABC transporter JN178_RS02990 PF12804 MobA-like NTP transferase domain JN178_RS03000 PF01323 DSBA-like thioredoxin domain JN178_RS03005 PF00593 TonB dependent receptor JN178_RS03005 PF07715 TonB-dependent Receptor Plug Domain JN178_RS03010 PF01636 Phosphotransferase enzyme family JN178_RS03015 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JN178_RS03015 PF13746 4Fe-4S dicluster domain JN178_RS03015 PF12801 4Fe-4S binding domain JN178_RS03030 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS03030 PF12806 Acetyl-CoA dehydrogenase C-terminal like JN178_RS03030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN178_RS03030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS03040 PF04909 Amidohydrolase JN178_RS03045 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JN178_RS03045 PF13378 Enolase C-terminal domain-like JN178_RS03050 PF00596 Class II Aldolase and Adducin N-terminal domain JN178_RS03060 PF13533 Biotin-lipoyl like JN178_RS03065 PF00873 AcrB/AcrD/AcrF family JN178_RS03080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS03080 PF00672 HAMP domain JN178_RS03080 PF02743 Cache domain JN178_RS03085 PF04545 Sigma-70, region 4 JN178_RS03085 PF00140 Sigma-70 factor, region 1.2 JN178_RS03085 PF04539 Sigma-70 region 3 JN178_RS03085 PF04542 Sigma-70 region 2 JN178_RS03085 PF04546 Sigma-70, non-essential region JN178_RS03085 PF03979 Sigma-70 factor, region 1.1 JN178_RS03090 PF08278 DNA primase DnaG DnaB-binding JN178_RS03090 PF10410 DnaB-helicase binding domain of primase JN178_RS03090 PF01807 CHC2 zinc finger JN178_RS03090 PF08275 DNA primase catalytic core, N-terminal domain JN178_RS03100 PF01165 Ribosomal protein S21 JN178_RS03105 PF00814 Glycoprotease family JN178_RS03115 PF02660 Glycerol-3-phosphate acyltransferase JN178_RS03120 PF02152 Dihydroneopterin aldolase JN178_RS03130 PF02673 Bacitracin resistance protein BacA JN178_RS03135 PF01230 HIT domain JN178_RS03150 PF03594 Benzoate membrane transport protein JN178_RS03155 PF07883 Cupin domain JN178_RS03155 PF01381 Helix-turn-helix JN178_RS03160 PF04381 Putative exonuclease, RdgC JN178_RS03165 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN178_RS03165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS03165 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS03170 PF00072 Response regulator receiver domain JN178_RS03170 PF00486 Transcriptional regulatory protein, C terminal JN178_RS03175 PF00989 PAS fold JN178_RS03175 PF11808 Phosphate regulon sensor protein PhoR JN178_RS03175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS03175 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS03180 PF12849 PBP superfamily domain JN178_RS03205 PF01618 MotA/TolQ/ExbB proton channel family JN178_RS03210 PF01618 MotA/TolQ/ExbB proton channel family JN178_RS03215 PF02472 Biopolymer transport protein ExbD/TolR JN178_RS03220 PF03544 Gram-negative bacterial TonB protein C-terminal JN178_RS03230 PF00072 Response regulator receiver domain JN178_RS03235 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS03235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS03235 PF01627 Hpt domain JN178_RS03235 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JN178_RS03235 PF00672 HAMP domain JN178_RS03235 PF00072 Response regulator receiver domain JN178_RS03245 PF00501 AMP-binding enzyme JN178_RS03245 PF13193 AMP-binding enzyme C-terminal domain JN178_RS03255 PF07995 Glucose / Sorbosone dehydrogenase JN178_RS03260 PF11791 Aconitate B N-terminal domain JN178_RS03260 PF06434 Aconitate hydratase 2 N-terminus JN178_RS03260 PF00330 Aconitase family (aconitate hydratase) JN178_RS03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS03270 PF01627 Hpt domain JN178_RS03270 PF00672 HAMP domain JN178_RS03270 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS03270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JN178_RS03270 PF00072 Response regulator receiver domain JN178_RS03275 PF00756 Putative esterase JN178_RS03290 PF14743 DNA ligase OB-like domain JN178_RS03290 PF01068 ATP dependent DNA ligase domain JN178_RS03300 PF01842 ACT domain JN178_RS03300 PF00696 Amino acid kinase family JN178_RS03305 PF00360 Phytochrome region JN178_RS03305 PF01590 GAF domain JN178_RS03305 PF00563 EAL domain JN178_RS03305 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS03310 PF00672 HAMP domain JN178_RS03310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS03315 PF00149 Calcineurin-like phosphoesterase JN178_RS03320 PF04379 ApaG domain JN178_RS03325 PF00398 Ribosomal RNA adenine dimethylase JN178_RS03330 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JN178_RS03335 PF00639 PPIC-type PPIASE domain JN178_RS03335 PF09312 SurA N-terminal domain JN178_RS03340 PF04453 LPS transport system D JN178_RS03340 PF03968 OstA-like protein JN178_RS03345 PF05099 Tellurite resistance protein TerB JN178_RS03345 PF00226 DnaJ domain JN178_RS03350 PF02899 Phage integrase, N-terminal SAM-like domain JN178_RS03350 PF00589 Phage integrase family JN178_RS03355 PF10411 Disulfide bond isomerase protein N-terminus JN178_RS03355 PF13098 Thioredoxin-like domain JN178_RS03360 PF01368 DHH family JN178_RS03360 PF02272 DHHA1 domain JN178_RS03360 PF17768 RecJ OB domain JN178_RS03370 PF11967 Recombination protein O N terminal JN178_RS03370 PF02565 Recombination protein O C terminal JN178_RS03375 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JN178_RS03380 PF01648 4'-phosphopantetheinyl transferase superfamily JN178_RS03385 PF05958 tRNA (Uracil-5-)-methyltransferase JN178_RS03390 PF04607 Region found in RelA / SpoT proteins JN178_RS03390 PF02824 TGS domain JN178_RS03390 PF13291 ACT domain JN178_RS03395 PF03819 MazG nucleotide pyrophosphohydrolase domain JN178_RS03405 PF00593 TonB dependent receptor JN178_RS03405 PF07660 Secretin and TonB N terminus short domain JN178_RS03405 PF07715 TonB-dependent Receptor Plug Domain JN178_RS03430 PF00106 short chain dehydrogenase JN178_RS03440 PF00501 AMP-binding enzyme JN178_RS03450 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JN178_RS03460 PF00535 Glycosyl transferase family 2 JN178_RS03480 PF08521 Two-component sensor kinase N-terminal JN178_RS03480 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS03480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS03485 PF00072 Response regulator receiver domain JN178_RS03485 PF00486 Transcriptional regulatory protein, C terminal JN178_RS03495 PF00572 Ribosomal protein L13 JN178_RS03500 PF00380 Ribosomal protein S9/S16 JN178_RS03505 PF00355 Rieske [2Fe-2S] domain JN178_RS03505 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JN178_RS03510 PF00032 Cytochrome b(C-terminal)/b6/petD JN178_RS03510 PF00033 Cytochrome b/b6/petB JN178_RS03515 PF02167 Cytochrome C1 family JN178_RS03520 PF00043 Glutathione S-transferase, C-terminal domain JN178_RS03520 PF02798 Glutathione S-transferase, N-terminal domain JN178_RS03525 PF04386 Stringent starvation protein B JN178_RS03540 PF00072 Response regulator receiver domain JN178_RS03540 PF00486 Transcriptional regulatory protein, C terminal JN178_RS03545 PF00571 CBS domain JN178_RS03545 PF03448 MgtE intracellular N domain JN178_RS03545 PF01769 Divalent cation transporter JN178_RS03550 PF00381 PTS HPr component phosphorylation site JN178_RS03555 PF03668 P-loop ATPase protein family JN178_RS03560 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JN178_RS03565 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JN178_RS03570 PF04963 Sigma-54 factor, core binding domain JN178_RS03570 PF00309 Sigma-54 factor, Activator interacting domain (AID) JN178_RS03570 PF04552 Sigma-54, DNA binding domain JN178_RS03575 PF00005 ABC transporter JN178_RS03575 PF12399 Branched-chain amino acid ATP-binding cassette transporter JN178_RS03580 PF03968 OstA-like protein JN178_RS03595 PF00571 CBS domain JN178_RS03595 PF01380 SIS domain JN178_RS03600 PF01699 Sodium/calcium exchanger protein JN178_RS03605 PF00005 ABC transporter JN178_RS03610 PF02405 Permease MlaE JN178_RS03615 PF02470 MlaD protein JN178_RS03620 PF05494 MlaC protein JN178_RS03630 PF01722 BolA-like protein JN178_RS03635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JN178_RS03640 PF13180 PDZ domain JN178_RS03645 PF13180 PDZ domain JN178_RS03645 PF00595 PDZ domain JN178_RS03655 PF03969 AFG1-like ATPase JN178_RS03660 PF01709 Transcriptional regulator JN178_RS03680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS03680 PF03466 LysR substrate binding domain JN178_RS03685 PF02567 Phenazine biosynthesis-like protein JN178_RS03690 PF03466 LysR substrate binding domain JN178_RS03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS03695 PF12833 Helix-turn-helix domain JN178_RS03695 PF02311 AraC-like ligand binding domain JN178_RS03700 PF07681 DoxX JN178_RS03715 PF00578 AhpC/TSA family JN178_RS03725 PF05114 Protein of unknown function (DUF692) JN178_RS03735 PF00085 Thioredoxin JN178_RS03750 PF00881 Nitroreductase family JN178_RS03760 PF02355 Protein export membrane protein JN178_RS03760 PF07549 SecD/SecF GG Motif JN178_RS03765 PF00999 Sodium/hydrogen exchanger family JN178_RS03765 PF02080 TrkA-C domain JN178_RS03765 PF03471 Transporter associated domain JN178_RS03785 PF03193 RsgA GTPase JN178_RS03815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS03815 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS03820 PF00486 Transcriptional regulatory protein, C terminal JN178_RS03820 PF00072 Response regulator receiver domain JN178_RS03825 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS03830 PF00892 EamA-like transporter family JN178_RS03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS03840 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS03840 PF09308 LuxQ, periplasmic JN178_RS03840 PF00072 Response regulator receiver domain JN178_RS03845 PF13458 Periplasmic binding protein JN178_RS03865 PF00438 S-adenosylmethionine synthetase, N-terminal domain JN178_RS03865 PF02773 S-adenosylmethionine synthetase, C-terminal domain JN178_RS03865 PF02772 S-adenosylmethionine synthetase, central domain JN178_RS03870 PF00456 Transketolase, thiamine diphosphate binding domain JN178_RS03870 PF02780 Transketolase, C-terminal domain JN178_RS03870 PF02779 Transketolase, pyrimidine binding domain JN178_RS03875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JN178_RS03875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JN178_RS03880 PF00162 Phosphoglycerate kinase JN178_RS03885 PF00274 Fructose-bisphosphate aldolase class-I JN178_RS03895 PF07676 WD40-like Beta Propeller Repeat JN178_RS03895 PF04052 TolB amino-terminal domain JN178_RS03900 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN178_RS03905 PF02541 Ppx/GppA phosphatase family JN178_RS03910 PF13089 Polyphosphate kinase N-terminal domain JN178_RS03910 PF17941 Polyphosphate kinase C-terminal domain 1 JN178_RS03910 PF13090 Polyphosphate kinase C-terminal domain 2 JN178_RS03910 PF02503 Polyphosphate kinase middle domain JN178_RS03920 PF00528 Binding-protein-dependent transport system inner membrane component JN178_RS03925 PF00528 Binding-protein-dependent transport system inner membrane component JN178_RS03930 PF00005 ABC transporter JN178_RS03935 PF01895 PhoU domain JN178_RS03940 PF01384 Phosphate transporter family JN178_RS03950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS03950 PF03466 LysR substrate binding domain JN178_RS03975 PF03006 Haemolysin-III related JN178_RS03980 PF01047 MarR family JN178_RS03985 PF02566 OsmC-like protein JN178_RS03990 PF01433 Peptidase family M1 domain JN178_RS03995 PF00144 Beta-lactamase JN178_RS04005 PF09186 Domain of unknown function (DUF1949) JN178_RS04005 PF01205 Uncharacterized protein family UPF0029 JN178_RS04020 PF12320 Type 5 capsule protein repressor C-terminal domain JN178_RS04020 PF00149 Calcineurin-like phosphoesterase JN178_RS04025 PF13476 AAA domain JN178_RS04035 PF01223 DNA/RNA non-specific endonuclease JN178_RS04040 PF00375 Sodium:dicarboxylate symporter family JN178_RS04045 PF00491 Arginase family JN178_RS04050 PF01979 Amidohydrolase family JN178_RS04055 PF07702 UTRA domain JN178_RS04055 PF00392 Bacterial regulatory proteins, gntR family JN178_RS04060 PF01175 Urocanase Rossmann-like domain JN178_RS04060 PF17391 Urocanase N-terminal domain JN178_RS04060 PF17392 Urocanase C-terminal domain JN178_RS04065 PF00221 Aromatic amino acid lyase JN178_RS04085 PF01869 BadF/BadG/BcrA/BcrD ATPase family JN178_RS04090 PF01979 Amidohydrolase family JN178_RS04100 PF00005 ABC transporter JN178_RS04100 PF12848 ABC transporter JN178_RS04105 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) JN178_RS04110 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JN178_RS04110 PF00361 Proton-conducting membrane transporter JN178_RS04115 PF01300 Telomere recombination JN178_RS04120 PF03466 LysR substrate binding domain JN178_RS04120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS04140 PF00924 Mechanosensitive ion channel JN178_RS04150 PF18494 Pullulanase Ins domain JN178_RS04150 PF17967 Pullulanase N2 domain JN178_RS04150 PF03714 Bacterial pullanase-associated domain JN178_RS04150 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JN178_RS04150 PF11852 Domain of unknown function (DUF3372) JN178_RS04155 PF02525 Flavodoxin-like fold JN178_RS04160 PF03466 LysR substrate binding domain JN178_RS04160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS04180 PF02397 Bacterial sugar transferase JN178_RS04205 PF03150 Di-haem cytochrome c peroxidase JN178_RS04205 PF00034 Cytochrome c JN178_RS04225 PF00072 Response regulator receiver domain JN178_RS04225 PF04397 LytTr DNA-binding domain JN178_RS04235 PF04172 LrgB-like family JN178_RS04240 PF00072 Response regulator receiver domain JN178_RS04270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS04270 PF03466 LysR substrate binding domain JN178_RS04275 PF04055 Radical SAM superfamily JN178_RS04275 PF06969 HemN C-terminal domain JN178_RS04280 PF01725 Ham1 family JN178_RS04285 PF00270 DEAD/DEAH box helicase JN178_RS04285 PF00271 Helicase conserved C-terminal domain JN178_RS04300 PF13443 Cro/C1-type HTH DNA-binding domain JN178_RS04310 PF01743 Poly A polymerase head domain JN178_RS04310 PF12627 Probable RNA and SrmB- binding site of polymerase A JN178_RS04315 PF13401 AAA domain JN178_RS04315 PF01471 Putative peptidoglycan binding domain JN178_RS04325 PF01966 HD domain JN178_RS04325 PF11871 Domain of unknown function (DUF3391) JN178_RS04330 PF00694 Aconitase C-terminal domain JN178_RS04335 PF00330 Aconitase family (aconitate hydratase) JN178_RS04340 PF00180 Isocitrate/isopropylmalate dehydrogenase JN178_RS04345 PF00682 HMGL-like JN178_RS04345 PF08502 LeuA allosteric (dimerisation) domain JN178_RS04360 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JN178_RS04360 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JN178_RS04365 PF14592 Chondroitinase B JN178_RS04370 PF05426 Alginate lyase JN178_RS04370 PF07940 Heparinase II/III-like protein JN178_RS04380 PF07690 Major Facilitator Superfamily JN178_RS04385 PF00294 pfkB family carbohydrate kinase JN178_RS04390 PF01081 KDPG and KHG aldolase JN178_RS04395 PF00392 Bacterial regulatory proteins, gntR family JN178_RS04395 PF07729 FCD domain JN178_RS04400 PF08787 Alginate lyase JN178_RS04415 PF08787 Alginate lyase JN178_RS04420 PF00113 Enolase, C-terminal TIM barrel domain JN178_RS04420 PF03952 Enolase, N-terminal domain JN178_RS04425 PF06418 CTP synthase N-terminus JN178_RS04425 PF00117 Glutamine amidotransferase class-I JN178_RS04430 PF01624 MutS domain I JN178_RS04430 PF05192 MutS domain III JN178_RS04430 PF00488 MutS domain V JN178_RS04430 PF05190 MutS family domain IV JN178_RS04430 PF05188 MutS domain II JN178_RS04435 PF02464 Competence-damaged protein JN178_RS04440 PF00154 recA bacterial DNA recombination protein JN178_RS04445 PF00005 ABC transporter JN178_RS04450 PF12679 ABC-2 family transporter protein JN178_RS04455 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS04455 PF00672 HAMP domain JN178_RS04455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS04460 PF00486 Transcriptional regulatory protein, C terminal JN178_RS04460 PF00072 Response regulator receiver domain JN178_RS04490 PF00005 ABC transporter JN178_RS04495 PF03379 CcmB protein JN178_RS04500 PF01578 Cytochrome C assembly protein JN178_RS04505 PF04995 Heme exporter protein D (CcmD) JN178_RS04510 PF03100 CcmE JN178_RS04515 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JN178_RS04515 PF01578 Cytochrome C assembly protein JN178_RS04520 PF08534 Redoxin JN178_RS04525 PF03918 Cytochrome C biogenesis protein JN178_RS04535 PF04333 MlaA lipoprotein JN178_RS04545 PF16363 GDP-mannose 4,6 dehydratase JN178_RS04555 PF00854 POT family JN178_RS04565 PF00005 ABC transporter JN178_RS04585 PF00953 Glycosyl transferase family 4 JN178_RS04600 PF00483 Nucleotidyl transferase JN178_RS04610 PF18324 Hypothetical protein TT1725 JN178_RS04610 PF00180 Isocitrate/isopropylmalate dehydrogenase JN178_RS04625 PF11892 Domain of unknown function (DUF3412) JN178_RS04625 PF03641 Possible lysine decarboxylase JN178_RS04625 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JN178_RS04630 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS04635 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JN178_RS04635 PF14489 QueF-like protein JN178_RS04640 PF07348 Syd protein (SUKH-2) JN178_RS04675 PF00849 RNA pseudouridylate synthase JN178_RS04680 PF00258 Flavodoxin JN178_RS04685 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JN178_RS04685 PF00132 Bacterial transferase hexapeptide (six repeats) JN178_RS04685 PF14602 Hexapeptide repeat of succinyl-transferase JN178_RS04690 PF01909 Nucleotidyltransferase domain JN178_RS04690 PF01966 HD domain JN178_RS04690 PF08335 GlnD PII-uridylyltransferase JN178_RS04695 PF00557 Metallopeptidase family M24 JN178_RS04700 PF00318 Ribosomal protein S2 JN178_RS04705 PF00889 Elongation factor TS JN178_RS04710 PF00696 Amino acid kinase family JN178_RS04715 PF01765 Ribosome recycling factor JN178_RS04720 PF01255 Putative undecaprenyl diphosphate synthase JN178_RS04730 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JN178_RS04730 PF13288 DXP reductoisomerase C-terminal domain JN178_RS04730 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JN178_RS04735 PF02163 Peptidase family M50 JN178_RS04735 PF17820 PDZ domain JN178_RS04740 PF07244 Surface antigen variable number repeat JN178_RS04740 PF01103 Surface antigen JN178_RS04745 PF03938 Outer membrane protein (OmpH-like) JN178_RS04750 PF07977 FabA-like domain JN178_RS04755 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JN178_RS04755 PF00132 Bacterial transferase hexapeptide (six repeats) JN178_RS04760 PF02684 Lipid-A-disaccharide synthetase JN178_RS04765 PF01351 Ribonuclease HII JN178_RS04770 PF02811 PHP domain JN178_RS04770 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JN178_RS04770 PF14579 Helix-hairpin-helix motif JN178_RS04770 PF01336 OB-fold nucleic acid binding domain JN178_RS04770 PF07733 Bacterial DNA polymerase III alpha NTPase domain JN178_RS04775 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JN178_RS04780 PF01171 PP-loop family JN178_RS04780 PF09179 TilS substrate binding domain JN178_RS04780 PF11734 TilS substrate C-terminal domain JN178_RS04785 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS04790 PF02254 TrkA-N domain JN178_RS04790 PF02080 TrkA-C domain JN178_RS04790 PF00999 Sodium/hydrogen exchanger family JN178_RS04800 PF14437 MafB19-like deaminase JN178_RS04805 PF01464 Transglycosylase SLT domain JN178_RS04805 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN178_RS04810 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JN178_RS04810 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JN178_RS04810 PF02769 AIR synthase related protein, C-terminal domain JN178_RS04820 PF01713 Smr domain JN178_RS04875 PF01584 CheW-like domain JN178_RS04875 PF00072 Response regulator receiver domain JN178_RS04880 PF01739 CheR methyltransferase, SAM binding domain JN178_RS04880 PF03705 CheR methyltransferase, all-alpha domain JN178_RS04885 PF00460 Flagella basal body rod protein JN178_RS04890 PF00460 Flagella basal body rod protein JN178_RS04890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JN178_RS04895 PF13860 FlgD Ig-like domain JN178_RS04895 PF03963 Flagellar hook capping protein - N-terminal region JN178_RS04895 PF13861 FlgD Tudor-like domain JN178_RS04900 PF07559 Flagellar basal body protein FlaE JN178_RS04900 PF00460 Flagella basal body rod protein JN178_RS04900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JN178_RS04905 PF00460 Flagella basal body rod protein JN178_RS04905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JN178_RS04910 PF00460 Flagella basal body rod protein JN178_RS04910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JN178_RS04915 PF02107 Flagellar L-ring protein JN178_RS04920 PF02119 Flagellar P-ring protein JN178_RS04925 PF10135 Rod binding protein JN178_RS04925 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JN178_RS04935 PF00700 Bacterial flagellin C-terminal helical region JN178_RS04935 PF00700 Bacterial flagellin C-terminal helical region JN178_RS04935 PF00669 Bacterial flagellin N-terminal helical region JN178_RS04935 PF00669 Bacterial flagellin N-terminal helical region JN178_RS04945 PF00700 Bacterial flagellin C-terminal helical region JN178_RS04945 PF07196 Flagellin hook IN motif JN178_RS04945 PF00669 Bacterial flagellin N-terminal helical region JN178_RS04950 PF00669 Bacterial flagellin N-terminal helical region JN178_RS04950 PF00700 Bacterial flagellin C-terminal helical region JN178_RS04950 PF07196 Flagellin hook IN motif JN178_RS04955 PF00669 Bacterial flagellin N-terminal helical region JN178_RS04955 PF07196 Flagellin hook IN motif JN178_RS04955 PF00700 Bacterial flagellin C-terminal helical region JN178_RS04960 PF03646 FlaG protein JN178_RS04965 PF02465 Flagellar hook-associated protein 2 N-terminus JN178_RS04965 PF07195 Flagellar hook-associated protein 2 C-terminus JN178_RS04965 PF07196 Flagellin hook IN motif JN178_RS04970 PF02561 Flagellar protein FliS JN178_RS04990 PF16363 GDP-mannose 4,6 dehydratase JN178_RS05000 PF00483 Nucleotidyl transferase JN178_RS05005 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JN178_RS05010 PF00132 Bacterial transferase hexapeptide (six repeats) JN178_RS05025 PF00535 Glycosyl transferase family 2 JN178_RS05030 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JN178_RS05035 PF02719 Polysaccharide biosynthesis protein JN178_RS05050 PF04991 LicD family JN178_RS05055 PF03102 NeuB family JN178_RS05055 PF08666 SAF domain JN178_RS05065 PF02348 Cytidylyltransferase JN178_RS05070 PF01467 Cytidylyltransferase-like JN178_RS05075 PF00669 Bacterial flagellin N-terminal helical region JN178_RS05075 PF00700 Bacterial flagellin C-terminal helical region JN178_RS05080 PF00158 Sigma-54 interaction domain JN178_RS05080 PF02954 Bacterial regulatory protein, Fis family JN178_RS05080 PF06490 Flagellar regulatory protein FleQ JN178_RS05085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS05085 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS05085 PF13188 PAS domain JN178_RS05090 PF02954 Bacterial regulatory protein, Fis family JN178_RS05090 PF00072 Response regulator receiver domain JN178_RS05090 PF00158 Sigma-54 interaction domain JN178_RS05095 PF02049 Flagellar hook-basal body complex protein FliE JN178_RS05100 PF08345 Flagellar M-ring protein C-terminal JN178_RS05100 PF01514 Secretory protein of YscJ/FliF family JN178_RS05105 PF14842 FliG N-terminal domain JN178_RS05105 PF14841 FliG middle domain JN178_RS05105 PF01706 FliG C-terminal domain JN178_RS05115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JN178_RS05115 PF18269 T3SS EscN ATPase C-terminal domain JN178_RS05135 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JN178_RS05135 PF02154 Flagellar motor switch protein FliM JN178_RS05140 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JN178_RS05145 PF04347 Flagellar biosynthesis protein, FliO JN178_RS05150 PF00813 FliP family JN178_RS05155 PF01313 Bacterial export proteins, family 3 JN178_RS05160 PF01311 Bacterial export proteins, family 1 JN178_RS05165 PF01312 FlhB HrpN YscU SpaS Family JN178_RS05170 PF00771 FHIPEP family JN178_RS05175 PF00448 SRP54-type protein, GTPase domain JN178_RS05180 PF10609 NUBPL iron-transfer P-loop NTPase JN178_RS05185 PF04539 Sigma-70 region 3 JN178_RS05185 PF04545 Sigma-70, region 4 JN178_RS05185 PF04542 Sigma-70 region 2 JN178_RS05190 PF00072 Response regulator receiver domain JN178_RS05195 PF04344 Chemotaxis phosphatase, CheZ JN178_RS05200 PF01627 Hpt domain JN178_RS05200 PF02895 Signal transducing histidine kinase, homodimeric domain JN178_RS05200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS05200 PF00072 Response regulator receiver domain JN178_RS05200 PF01584 CheW-like domain JN178_RS05205 PF01339 CheB methylesterase JN178_RS05205 PF00072 Response regulator receiver domain JN178_RS05210 PF13614 AAA domain JN178_RS05220 PF01584 CheW-like domain JN178_RS05230 PF04204 Homoserine O-succinyltransferase JN178_RS05235 PF02607 B12 binding domain JN178_RS05235 PF02965 Vitamin B12 dependent methionine synthase, activation domain JN178_RS05235 PF00809 Pterin binding enzyme JN178_RS05235 PF02574 Homocysteine S-methyltransferase JN178_RS05235 PF02310 B12 binding domain JN178_RS05240 PF02965 Vitamin B12 dependent methionine synthase, activation domain JN178_RS05240 PF00809 Pterin binding enzyme JN178_RS05240 PF02574 Homocysteine S-methyltransferase JN178_RS05240 PF02607 B12 binding domain JN178_RS05240 PF02310 B12 binding domain JN178_RS05250 PF05987 Bacterial protein of unknown function (DUF898) JN178_RS05260 PF02743 Cache domain JN178_RS05260 PF00672 HAMP domain JN178_RS05260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS05265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS05265 PF03466 LysR substrate binding domain JN178_RS05270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS05270 PF03466 LysR substrate binding domain JN178_RS05275 PF00484 Carbonic anhydrase JN178_RS05280 PF01740 STAS domain JN178_RS05280 PF00916 Sulfate permease family JN178_RS05290 PF00440 Bacterial regulatory proteins, tetR family JN178_RS05290 PF13977 BetI-type transcriptional repressor, C-terminal JN178_RS05295 PF05649 Peptidase family M13 JN178_RS05295 PF01431 Peptidase family M13 JN178_RS05310 PF01411 tRNA synthetases class II (A) JN178_RS05310 PF02272 DHHA1 domain JN178_RS05310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JN178_RS05315 PF02599 Global regulator protein family JN178_RS05340 PF00364 Biotin-requiring enzyme JN178_RS05340 PF00682 HMGL-like JN178_RS05340 PF02436 Conserved carboxylase domain JN178_RS05345 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit JN178_RS05350 PF00005 ABC transporter JN178_RS05355 PF00005 ABC transporter JN178_RS05355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JN178_RS05360 PF12911 N-terminal TM domain of oligopeptide transport permease C JN178_RS05360 PF00528 Binding-protein-dependent transport system inner membrane component JN178_RS05365 PF00528 Binding-protein-dependent transport system inner membrane component JN178_RS05370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JN178_RS05375 PF02954 Bacterial regulatory protein, Fis family JN178_RS05375 PF00158 Sigma-54 interaction domain JN178_RS05380 PF04012 PspA/IM30 family JN178_RS05395 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JN178_RS05400 PF00158 Sigma-54 interaction domain JN178_RS05400 PF18024 Helix-turn-helix domain JN178_RS05410 PF14497 Glutathione S-transferase, C-terminal domain JN178_RS05410 PF02798 Glutathione S-transferase, N-terminal domain JN178_RS05415 PF01037 Lrp/AsnC ligand binding domain JN178_RS05420 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JN178_RS05420 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JN178_RS05435 PF03301 Tryptophan 2,3-dioxygenase JN178_RS05450 PF00593 TonB dependent receptor JN178_RS05450 PF07715 TonB-dependent Receptor Plug Domain JN178_RS05465 PF01618 MotA/TolQ/ExbB proton channel family JN178_RS05470 PF01618 MotA/TolQ/ExbB proton channel family JN178_RS05475 PF02472 Biopolymer transport protein ExbD/TolR JN178_RS05480 PF03544 Gram-negative bacterial TonB protein C-terminal JN178_RS05490 PF17176 tRNA-binding domain JN178_RS05490 PF05127 Helicase JN178_RS05490 PF13718 GNAT acetyltransferase 2 JN178_RS05490 PF08351 Domain of unknown function (DUF1726) JN178_RS05530 PF00583 Acetyltransferase (GNAT) family JN178_RS05540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS05540 PF03466 LysR substrate binding domain JN178_RS05545 PF07690 Major Facilitator Superfamily JN178_RS05550 PF00296 Luciferase-like monooxygenase JN178_RS05555 PF00248 Aldo/keto reductase family JN178_RS05560 PF08240 Alcohol dehydrogenase GroES-like domain JN178_RS05560 PF00107 Zinc-binding dehydrogenase JN178_RS05565 PF05230 MASE2 domain JN178_RS05565 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS05570 PF16658 Class II release factor RF3, C-terminal domain JN178_RS05570 PF03144 Elongation factor Tu domain 2 JN178_RS05570 PF00009 Elongation factor Tu GTP binding domain JN178_RS05575 PF05746 DALR anticodon binding domain JN178_RS05575 PF03485 Arginyl tRNA synthetase N terminal domain JN178_RS05575 PF00750 tRNA synthetases class I (R) JN178_RS05585 PF01039 Carboxyl transferase domain JN178_RS05590 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS05595 PF13411 MerR HTH family regulatory protein JN178_RS05605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS05605 PF03466 LysR substrate binding domain JN178_RS05610 PF02525 Flavodoxin-like fold JN178_RS05625 PF00291 Pyridoxal-phosphate dependent enzyme JN178_RS05640 PF04224 Protein of unknown function, DUF417 JN178_RS05650 PF03466 LysR substrate binding domain JN178_RS05650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS05655 PF05368 NmrA-like family JN178_RS05665 PF00487 Fatty acid desaturase JN178_RS05675 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JN178_RS05690 PF00152 tRNA synthetases class II (D, K and N) JN178_RS05690 PF01336 OB-fold nucleic acid binding domain JN178_RS05695 PF08546 Ketopantoate reductase PanE/ApbA C terminal JN178_RS05695 PF02558 Ketopantoate reductase PanE/ApbA JN178_RS05700 PF00849 RNA pseudouridylate synthase JN178_RS05710 PF05193 Peptidase M16 inactive domain JN178_RS05710 PF00675 Insulinase (Peptidase family M16) JN178_RS05715 PF04262 Glutamate-cysteine ligase JN178_RS05725 PF07687 Peptidase dimerisation domain JN178_RS05725 PF01546 Peptidase family M20/M25/M40 JN178_RS05730 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS05730 PF09308 LuxQ, periplasmic JN178_RS05730 PF00072 Response regulator receiver domain JN178_RS05730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS05740 PF00005 ABC transporter JN178_RS05745 PF02687 FtsX-like permease family JN178_RS05745 PF12704 MacB-like periplasmic core domain JN178_RS05745 PF00005 ABC transporter JN178_RS05750 PF00005 ABC transporter JN178_RS05750 PF02687 FtsX-like permease family JN178_RS05750 PF12704 MacB-like periplasmic core domain JN178_RS05755 PF00158 Sigma-54 interaction domain JN178_RS05755 PF02954 Bacterial regulatory protein, Fis family JN178_RS05755 PF00072 Response regulator receiver domain JN178_RS05760 PF00672 HAMP domain JN178_RS05760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS05765 PF00128 Alpha amylase, catalytic domain JN178_RS05780 PF01713 Smr domain JN178_RS05785 PF05175 Methyltransferase small domain JN178_RS05790 PF01264 Chorismate synthase JN178_RS05800 PF04293 SpoVR like protein JN178_RS05805 PF04285 Protein of unknown function (DUF444) JN178_RS05810 PF08298 PrkA AAA domain JN178_RS05810 PF06798 PrkA serine protein kinase C-terminal domain JN178_RS05815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JN178_RS05815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JN178_RS05820 PF00462 Glutaredoxin JN178_RS05825 PF07715 TonB-dependent Receptor Plug Domain JN178_RS05825 PF00593 TonB dependent receptor JN178_RS05840 PF07715 TonB-dependent Receptor Plug Domain JN178_RS05840 PF00593 TonB dependent receptor JN178_RS05845 PF04324 BFD-like [2Fe-2S] binding domain JN178_RS05850 PF00578 AhpC/TSA family JN178_RS05850 PF10417 C-terminal domain of 1-Cys peroxiredoxin JN178_RS05855 PF00929 Exonuclease JN178_RS05860 PF00691 OmpA family JN178_RS05860 PF18393 MotY N-terminal domain JN178_RS05865 PF03009 Glycerophosphoryl diester phosphodiesterase family JN178_RS05870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JN178_RS05880 PF00313 'Cold-shock' DNA-binding domain JN178_RS05885 PF02225 PA domain JN178_RS05885 PF04389 Peptidase family M28 JN178_RS05895 PF00633 Helix-hairpin-helix motif JN178_RS05895 PF10576 Iron-sulfur binding domain of endonuclease III JN178_RS05895 PF00730 HhH-GPD superfamily base excision DNA repair protein JN178_RS05900 PF02508 Rnf-Nqr subunit, membrane protein JN178_RS05905 PF04205 FMN-binding domain JN178_RS05910 PF03116 NQR2, RnfD, RnfE family JN178_RS05915 PF13375 RnfC Barrel sandwich hybrid domain JN178_RS05915 PF12838 4Fe-4S dicluster domain JN178_RS05915 PF10531 SLBB domain JN178_RS05915 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JN178_RS05920 PF04060 Putative Fe-S cluster JN178_RS05925 PF02508 Rnf-Nqr subunit, membrane protein JN178_RS05940 PF01554 MatE JN178_RS05945 PF04851 Type III restriction enzyme, res subunit JN178_RS05945 PF02151 UvrB/uvrC motif JN178_RS05945 PF12344 Ultra-violet resistance protein B JN178_RS05945 PF17757 UvrB interaction domain JN178_RS05945 PF00271 Helicase conserved C-terminal domain JN178_RS05965 PF06508 Queuosine biosynthesis protein QueC JN178_RS05970 PF04055 Radical SAM superfamily JN178_RS05980 PF13537 Glutamine amidotransferase domain JN178_RS05980 PF00733 Asparagine synthase JN178_RS06005 PF03600 Citrate transporter JN178_RS06005 PF02080 TrkA-C domain JN178_RS06010 PF00009 Elongation factor Tu GTP binding domain JN178_RS06015 PF00459 Inositol monophosphatase family JN178_RS06025 PF01507 Phosphoadenosine phosphosulfate reductase family JN178_RS06030 PF00474 Sodium:solute symporter family JN178_RS06035 PF00072 Response regulator receiver domain JN178_RS06035 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS06045 PF04542 Sigma-70 region 2 JN178_RS06045 PF04545 Sigma-70, region 4 JN178_RS06060 PF13519 von Willebrand factor type A domain JN178_RS06065 PF00092 von Willebrand factor type A domain JN178_RS06075 PF01882 Protein of unknown function DUF58 JN178_RS06080 PF17863 AAA lid domain JN178_RS06080 PF07726 ATPase family associated with various cellular activities (AAA) JN178_RS06085 PF02803 Thiolase, C-terminal domain JN178_RS06085 PF00108 Thiolase, N-terminal domain JN178_RS06090 PF00378 Enoyl-CoA hydratase/isomerase JN178_RS06090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JN178_RS06090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JN178_RS06105 PF00563 EAL domain JN178_RS06105 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS06105 PF03707 Bacterial signalling protein N terminal repeat JN178_RS06110 PF05193 Peptidase M16 inactive domain JN178_RS06110 PF00675 Insulinase (Peptidase family M16) JN178_RS06115 PF00300 Histidine phosphatase superfamily (branch 1) JN178_RS06125 PF01595 Cyclin M transmembrane N-terminal domain JN178_RS06125 PF03471 Transporter associated domain JN178_RS06125 PF00571 CBS domain JN178_RS06130 PF01578 Cytochrome C assembly protein JN178_RS06135 PF02881 SRP54-type protein, helical bundle domain JN178_RS06135 PF02978 Signal peptide binding domain JN178_RS06135 PF00448 SRP54-type protein, GTPase domain JN178_RS06175 PF00873 AcrB/AcrD/AcrF family JN178_RS06180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN178_RS06185 PF00005 ABC transporter JN178_RS06185 PF00664 ABC transporter transmembrane region JN178_RS06190 PF00886 Ribosomal protein S16 JN178_RS06195 PF05239 PRC-barrel domain JN178_RS06195 PF01782 RimM N-terminal domain JN178_RS06200 PF01746 tRNA (Guanine-1)-methyltransferase JN178_RS06205 PF01245 Ribosomal protein L19 JN178_RS06210 PF03458 UPF0126 domain JN178_RS06220 PF00378 Enoyl-CoA hydratase/isomerase JN178_RS06225 PF00793 DAHP synthetase I family JN178_RS06230 PF01817 Chorismate mutase type II JN178_RS06230 PF02153 Prephenate dehydrogenase JN178_RS06235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS06235 PF00672 HAMP domain JN178_RS06235 PF12729 Four helix bundle sensory module for signal transduction JN178_RS06240 PF00800 Prephenate dehydratase JN178_RS06240 PF01817 Chorismate mutase type II JN178_RS06245 PF00072 Response regulator receiver domain JN178_RS06250 PF01253 Translation initiation factor SUI1 JN178_RS06270 PF03707 Bacterial signalling protein N terminal repeat JN178_RS06270 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS06270 PF00563 EAL domain JN178_RS06280 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS06280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS06290 PF00158 Sigma-54 interaction domain JN178_RS06290 PF00072 Response regulator receiver domain JN178_RS06300 PF02938 GAD domain JN178_RS06300 PF00152 tRNA synthetases class II (D, K and N) JN178_RS06300 PF01336 OB-fold nucleic acid binding domain JN178_RS06305 PF00293 NUDIX domain JN178_RS06310 PF02075 Crossover junction endodeoxyribonuclease RuvC JN178_RS06315 PF07499 RuvA, C-terminal domain JN178_RS06315 PF01330 RuvA N terminal domain JN178_RS06320 PF05496 Holliday junction DNA helicase RuvB P-loop domain JN178_RS06320 PF17864 RuvB AAA lid domain JN178_RS06320 PF05491 RuvB C-terminal winged helix domain JN178_RS06325 PF03061 Thioesterase superfamily JN178_RS06330 PF01618 MotA/TolQ/ExbB proton channel family JN178_RS06335 PF02472 Biopolymer transport protein ExbD/TolR JN178_RS06345 PF07676 WD40-like Beta Propeller Repeat JN178_RS06345 PF04052 TolB amino-terminal domain JN178_RS06350 PF00691 OmpA family JN178_RS06355 PF13174 Tetratricopeptide repeat JN178_RS06355 PF16331 TolA binding protein trimerisation JN178_RS06380 PF02445 Quinolinate synthetase A protein JN178_RS06400 PF00440 Bacterial regulatory proteins, tetR family JN178_RS06400 PF17754 MftR C-terminal domain JN178_RS06405 PF13474 SnoaL-like domain JN178_RS06425 PF00392 Bacterial regulatory proteins, gntR family JN178_RS06435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS06435 PF03466 LysR substrate binding domain JN178_RS06455 PF00593 TonB dependent receptor JN178_RS06455 PF07715 TonB-dependent Receptor Plug Domain JN178_RS06485 PF01381 Helix-turn-helix JN178_RS06490 PF01734 Patatin-like phospholipase JN178_RS06500 PF00270 DEAD/DEAH box helicase JN178_RS06500 PF00271 Helicase conserved C-terminal domain JN178_RS06510 PF02774 Semialdehyde dehydrogenase, dimerisation domain JN178_RS06510 PF01118 Semialdehyde dehydrogenase, NAD binding domain JN178_RS06515 PF00106 short chain dehydrogenase JN178_RS06520 PF03466 LysR substrate binding domain JN178_RS06520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS06530 PF00873 AcrB/AcrD/AcrF family JN178_RS06540 PF08361 MAATS-type transcriptional repressor, C-terminal region JN178_RS06540 PF00440 Bacterial regulatory proteins, tetR family JN178_RS06545 PF07715 TonB-dependent Receptor Plug Domain JN178_RS06545 PF00593 TonB dependent receptor JN178_RS06555 PF00873 AcrB/AcrD/AcrF family JN178_RS06565 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS06575 PF02470 MlaD protein JN178_RS06580 PF04403 Paraquat-inducible protein A JN178_RS06590 PF03466 LysR substrate binding domain JN178_RS06590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS06610 PF06719 AraC-type transcriptional regulator N-terminus JN178_RS06610 PF12833 Helix-turn-helix domain JN178_RS06615 PF00152 tRNA synthetases class II (D, K and N) JN178_RS06615 PF01336 OB-fold nucleic acid binding domain JN178_RS06625 PF01699 Sodium/calcium exchanger protein JN178_RS06630 PF08443 RimK-like ATP-grasp domain JN178_RS06630 PF18030 RimK PreATP-grasp domain JN178_RS06650 PF00072 Response regulator receiver domain JN178_RS06650 PF01339 CheB methylesterase JN178_RS06655 PF03975 CheD chemotactic sensory transduction JN178_RS06660 PF01739 CheR methyltransferase, SAM binding domain JN178_RS06660 PF03705 CheR methyltransferase, all-alpha domain JN178_RS06665 PF13426 PAS domain JN178_RS06665 PF08447 PAS fold JN178_RS06665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS06675 PF00202 Aminotransferase class-III JN178_RS06680 PF06968 Biotin and Thiamin Synthesis associated domain JN178_RS06680 PF04055 Radical SAM superfamily JN178_RS06685 PF00155 Aminotransferase class I and II JN178_RS06690 PF08241 Methyltransferase domain JN178_RS06700 PF03575 Peptidase family S51 JN178_RS06705 PF01451 Low molecular weight phosphotyrosine protein phosphatase JN178_RS06710 PF01032 FecCD transport family JN178_RS06715 PF00005 ABC transporter JN178_RS06720 PF01474 Class-II DAHP synthetase family JN178_RS06725 PF17151 Periplasmic sensor domain JN178_RS06725 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS06750 PF02702 Osmosensitive K+ channel His kinase sensor domain JN178_RS06750 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS06750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS06750 PF13493 Domain of unknown function (DUF4118) JN178_RS06755 PF00072 Response regulator receiver domain JN178_RS06755 PF00486 Transcriptional regulatory protein, C terminal JN178_RS06760 PF02080 TrkA-C domain JN178_RS06760 PF02254 TrkA-N domain JN178_RS06765 PF02386 Cation transport protein JN178_RS06775 PF00664 ABC transporter transmembrane region JN178_RS06775 PF00005 ABC transporter JN178_RS06780 PF04055 Radical SAM superfamily JN178_RS06780 PF06463 Molybdenum Cofactor Synthesis C JN178_RS06790 PF00072 Response regulator receiver domain JN178_RS06790 PF00486 Transcriptional regulatory protein, C terminal JN178_RS06815 PF00749 tRNA synthetases class I (E and Q), catalytic domain JN178_RS06860 PF01207 Dihydrouridine synthase (Dus) JN178_RS06865 PF01979 Amidohydrolase family JN178_RS06870 PF01979 Amidohydrolase family JN178_RS06885 PF13472 GDSL-like Lipase/Acylhydrolase family JN178_RS06890 PF00005 ABC transporter JN178_RS06900 PF01370 NAD dependent epimerase/dehydratase family JN178_RS06900 PF08338 Domain of unknown function (DUF1731) JN178_RS06905 PF02152 Dihydroneopterin aldolase JN178_RS06910 PF01594 AI-2E family transporter JN178_RS06915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS06920 PF00072 Response regulator receiver domain JN178_RS06920 PF00486 Transcriptional regulatory protein, C terminal JN178_RS06930 PF03795 YCII-related domain JN178_RS06935 PF00290 Tryptophan synthase alpha chain JN178_RS06940 PF00291 Pyridoxal-phosphate dependent enzyme JN178_RS06945 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JN178_RS06945 PF00218 Indole-3-glycerol phosphate synthase JN178_RS06950 PF00591 Glycosyl transferase family, a/b domain JN178_RS06950 PF02885 Glycosyl transferase family, helical bundle domain JN178_RS06955 PF00117 Glutamine amidotransferase class-I JN178_RS06960 PF04715 Anthranilate synthase component I, N terminal region JN178_RS06960 PF00425 chorismate binding enzyme JN178_RS06965 PF02811 PHP domain JN178_RS06970 PF01300 Telomere recombination JN178_RS06975 PF02616 Segregation and condensation protein ScpA JN178_RS06980 PF04079 Segregation and condensation complex subunit ScpB JN178_RS06985 PF00849 RNA pseudouridylate synthase JN178_RS06985 PF01479 S4 domain JN178_RS06995 PF00248 Aldo/keto reductase family JN178_RS07000 PF07702 UTRA domain JN178_RS07000 PF00392 Bacterial regulatory proteins, gntR family JN178_RS07005 PF00005 ABC transporter JN178_RS07015 PF00326 Prolyl oligopeptidase family JN178_RS07015 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JN178_RS07020 PF14602 Hexapeptide repeat of succinyl-transferase JN178_RS07020 PF12464 Maltose acetyltransferase JN178_RS07030 PF04286 Protein of unknown function (DUF445) JN178_RS07050 PF05724 Thiopurine S-methyltransferase (TPMT) JN178_RS07055 PF04355 SmpA / OmlA family JN178_RS07060 PF02463 RecF/RecN/SMC N terminal domain JN178_RS07065 PF00210 Ferritin-like domain JN178_RS07070 PF01513 ATP-NAD kinase JN178_RS07080 PF00465 Iron-containing alcohol dehydrogenase JN178_RS07095 PF00561 alpha/beta hydrolase fold JN178_RS07105 PF07715 TonB-dependent Receptor Plug Domain JN178_RS07105 PF00593 TonB dependent receptor JN178_RS07110 PF00072 Response regulator receiver domain JN178_RS07110 PF00196 Bacterial regulatory proteins, luxR family JN178_RS07115 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS07115 PF00072 Response regulator receiver domain JN178_RS07115 PF09308 LuxQ, periplasmic JN178_RS07115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS07120 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS07125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS07125 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS07125 PF09308 LuxQ, periplasmic JN178_RS07125 PF00072 Response regulator receiver domain JN178_RS07130 PF02652 L-lactate permease JN178_RS07135 PF01025 GrpE JN178_RS07140 PF00012 Hsp70 protein JN178_RS07145 PF00226 DnaJ domain JN178_RS07145 PF01556 DnaJ C terminal domain JN178_RS07145 PF00684 DnaJ central domain JN178_RS07150 PF01322 Cytochrome C' JN178_RS07160 PF01872 RibD C-terminal domain JN178_RS07170 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS07170 PF00563 EAL domain JN178_RS07170 PF03707 Bacterial signalling protein N terminal repeat JN178_RS07175 PF13193 AMP-binding enzyme C-terminal domain JN178_RS07175 PF00501 AMP-binding enzyme JN178_RS07175 PF16177 Acetyl-coenzyme A synthetase N-terminus JN178_RS07185 PF01113 Dihydrodipicolinate reductase, N-terminus JN178_RS07185 PF05173 Dihydrodipicolinate reductase, C-terminus JN178_RS07190 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JN178_RS07190 PF00117 Glutamine amidotransferase class-I JN178_RS07195 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JN178_RS07195 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JN178_RS07195 PF02142 MGS-like domain JN178_RS07200 PF01272 Transcription elongation factor, GreA/GreB, C-term JN178_RS07200 PF03449 Transcription elongation factor, N-terminal JN178_RS07205 PF12729 Four helix bundle sensory module for signal transduction JN178_RS07205 PF00672 HAMP domain JN178_RS07205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS07220 PF00011 Hsp20/alpha crystallin family JN178_RS07225 PF17151 Periplasmic sensor domain JN178_RS07225 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS07230 PF00871 Acetokinase family JN178_RS07235 PF07085 DRTGG domain JN178_RS07235 PF01515 Phosphate acetyl/butaryl transferase JN178_RS07240 PF01979 Amidohydrolase family JN178_RS07245 PF00795 Carbon-nitrogen hydrolase JN178_RS07250 PF03471 Transporter associated domain JN178_RS07250 PF00571 CBS domain JN178_RS07255 PF02130 Uncharacterized protein family UPF0054 JN178_RS07260 PF02562 PhoH-like protein JN178_RS07265 PF01938 TRAM domain JN178_RS07265 PF00919 Uncharacterized protein family UPF0004 JN178_RS07265 PF04055 Radical SAM superfamily JN178_RS07270 PF01494 FAD binding domain JN178_RS07280 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS07285 PF00873 AcrB/AcrD/AcrF family JN178_RS07290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN178_RS07330 PF00593 TonB dependent receptor JN178_RS07330 PF07715 TonB-dependent Receptor Plug Domain JN178_RS07335 PF03061 Thioesterase superfamily JN178_RS07340 PF01613 Flavin reductase like domain JN178_RS07345 PF01638 HxlR-like helix-turn-helix JN178_RS07360 PF01235 Sodium:alanine symporter family JN178_RS07405 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JN178_RS07410 PF01926 50S ribosome-binding GTPase JN178_RS07410 PF06071 Protein of unknown function (DUF933) JN178_RS07415 PF01195 Peptidyl-tRNA hydrolase JN178_RS07420 PF14693 Ribosomal protein TL5, C-terminal domain JN178_RS07420 PF01386 Ribosomal L25p family JN178_RS07435 PF14572 Phosphoribosyl synthetase-associated domain JN178_RS07435 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JN178_RS07445 PF00288 GHMP kinases N terminal domain JN178_RS07445 PF08544 GHMP kinases C terminal JN178_RS07450 PF03550 Outer membrane lipoprotein LolB JN178_RS07455 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JN178_RS07455 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JN178_RS07455 PF01488 Shikimate / quinate 5-dehydrogenase JN178_RS07460 PF00472 RF-1 domain JN178_RS07460 PF03462 PCRF domain JN178_RS07465 PF17827 PrmC N-terminal domain JN178_RS07465 PF13847 Methyltransferase domain JN178_RS07470 PF11849 Domain of unknown function (DUF3369) JN178_RS07475 PF04247 Invasion gene expression up-regulator, SirB JN178_RS07480 PF00793 DAHP synthetase I family JN178_RS07490 PF03466 LysR substrate binding domain JN178_RS07490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS07500 PF04241 Protein of unknown function (DUF423) JN178_RS07505 PF01728 FtsJ-like methyltransferase JN178_RS07505 PF18125 RlmM ferredoxin-like domain JN178_RS07510 PF03764 Elongation factor G, domain IV JN178_RS07510 PF14492 Elongation Factor G, domain II JN178_RS07510 PF00009 Elongation factor Tu GTP binding domain JN178_RS07510 PF00679 Elongation factor G C-terminus JN178_RS07510 PF03144 Elongation factor Tu domain 2 JN178_RS07520 PF17820 PDZ domain JN178_RS07520 PF01471 Putative peptidoglycan binding domain JN178_RS07520 PF03572 Peptidase family S41 JN178_RS07525 PF02560 Cyanate lyase C-terminal domain JN178_RS07530 PF03793 PASTA domain JN178_RS07530 PF00069 Protein kinase domain JN178_RS07535 PF01226 Formate/nitrite transporter JN178_RS07540 PF01841 Transglutaminase-like superfamily JN178_RS07540 PF11992 Domain of unknown function (DUF3488) JN178_RS07540 PF13559 Domain of unknown function (DUF4129) JN178_RS07550 PF17863 AAA lid domain JN178_RS07550 PF07726 ATPase family associated with various cellular activities (AAA) JN178_RS07555 PF03925 SeqA protein C-terminal domain JN178_RS07555 PF17206 SeqA protein N-terminal domain JN178_RS07560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JN178_RS07560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JN178_RS07560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JN178_RS07560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JN178_RS07565 PF00343 Carbohydrate phosphorylase JN178_RS07570 PF00563 EAL domain JN178_RS07570 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS07570 PF03707 Bacterial signalling protein N terminal repeat JN178_RS07575 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JN178_RS07585 PF01906 Putative heavy-metal-binding JN178_RS07595 PF03544 Gram-negative bacterial TonB protein C-terminal JN178_RS07610 PF01546 Peptidase family M20/M25/M40 JN178_RS07610 PF07687 Peptidase dimerisation domain JN178_RS07615 PF03960 ArsC family JN178_RS07635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JN178_RS07640 PF04209 homogentisate 1,2-dioxygenase JN178_RS07660 PF12327 FtsZ family, C-terminal domain JN178_RS07660 PF00091 Tubulin/FtsZ family, GTPase domain JN178_RS07675 PF03435 Saccharopine dehydrogenase NADP binding domain JN178_RS07680 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS07685 PF00563 EAL domain JN178_RS07685 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS07685 PF03707 Bacterial signalling protein N terminal repeat JN178_RS07690 PF12706 Beta-lactamase superfamily domain JN178_RS07695 PF18113 Rubredoxin binding C-terminal domain JN178_RS07695 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS07705 PF00440 Bacterial regulatory proteins, tetR family JN178_RS07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS07710 PF03466 LysR substrate binding domain JN178_RS07720 PF00171 Aldehyde dehydrogenase family JN178_RS07740 PF00873 AcrB/AcrD/AcrF family JN178_RS07750 PF00999 Sodium/hydrogen exchanger family JN178_RS07750 PF02254 TrkA-N domain JN178_RS07755 PF02525 Flavodoxin-like fold JN178_RS07770 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JN178_RS07775 PF00111 2Fe-2S iron-sulfur cluster binding domain JN178_RS07775 PF01799 [2Fe-2S] binding domain JN178_RS07780 PF01638 HxlR-like helix-turn-helix JN178_RS07790 PF02525 Flavodoxin-like fold JN178_RS07795 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS07795 PF05230 MASE2 domain JN178_RS07805 PF01979 Amidohydrolase family JN178_RS07810 PF00576 HIUase/Transthyretin family JN178_RS07825 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JN178_RS07825 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JN178_RS07830 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain JN178_RS07830 PF00111 2Fe-2S iron-sulfur cluster binding domain JN178_RS07830 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JN178_RS07830 PF01799 [2Fe-2S] binding domain JN178_RS07835 PF08362 YcdC-like protein, C-terminal region JN178_RS07835 PF00440 Bacterial regulatory proteins, tetR family JN178_RS07850 PF00860 Permease family JN178_RS07855 PF00962 Adenosine/AMP deaminase JN178_RS07865 PF03707 Bacterial signalling protein N terminal repeat JN178_RS07865 PF00563 EAL domain JN178_RS07865 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS07870 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS07870 PF00072 Response regulator receiver domain JN178_RS07875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS07875 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS07875 PF00072 Response regulator receiver domain JN178_RS07875 PF09308 LuxQ, periplasmic JN178_RS07885 PF00593 TonB dependent receptor JN178_RS07885 PF07715 TonB-dependent Receptor Plug Domain JN178_RS07890 PF00860 Permease family JN178_RS07900 PF07687 Peptidase dimerisation domain JN178_RS07900 PF01546 Peptidase family M20/M25/M40 JN178_RS07905 PF00266 Aminotransferase class-V JN178_RS07910 PF01925 Sulfite exporter TauE/SafE JN178_RS07920 PF01425 Amidase JN178_RS07955 PF03881 Fructosamine kinase JN178_RS07960 PF03129 Anticodon binding domain JN178_RS07960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JN178_RS07960 PF02824 TGS domain JN178_RS07960 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JN178_RS07965 PF05198 Translation initiation factor IF-3, N-terminal domain JN178_RS07965 PF00707 Translation initiation factor IF-3, C-terminal domain JN178_RS07970 PF01632 Ribosomal protein L35 JN178_RS07975 PF00453 Ribosomal protein L20 JN178_RS07980 PF01050 Mannose-6-phosphate isomerase JN178_RS07980 PF00483 Nucleotidyl transferase JN178_RS07985 PF02397 Bacterial sugar transferase JN178_RS07995 PF18412 Outer-membrane lipoprotein Wza C-terminal domain JN178_RS07995 PF02563 Polysaccharide biosynthesis/export protein JN178_RS07995 PF10531 SLBB domain JN178_RS08000 PF13614 AAA domain JN178_RS08030 PF00563 EAL domain JN178_RS08030 PF13426 PAS domain JN178_RS08030 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS08050 PF13477 Glycosyl transferase 4-like JN178_RS08050 PF00534 Glycosyl transferases group 1 JN178_RS08060 PF13439 Glycosyltransferase Family 4 JN178_RS08060 PF00534 Glycosyl transferases group 1 JN178_RS08065 PF04230 Polysaccharide pyruvyl transferase JN178_RS08080 PF00534 Glycosyl transferases group 1 JN178_RS08080 PF13439 Glycosyltransferase Family 4 JN178_RS08085 PF00535 Glycosyl transferase family 2 JN178_RS08090 PF01757 Acyltransferase family JN178_RS08095 PF01409 tRNA synthetases class II core domain (F) JN178_RS08095 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JN178_RS08100 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JN178_RS08100 PF03483 B3/4 domain JN178_RS08100 PF03484 tRNA synthetase B5 domain JN178_RS08100 PF03147 Ferredoxin-fold anticodon binding domain JN178_RS08100 PF01588 Putative tRNA binding domain JN178_RS08105 PF00216 Bacterial DNA-binding protein JN178_RS08120 PF04073 Aminoacyl-tRNA editing domain JN178_RS08125 PF01804 Penicillin amidase JN178_RS08130 PF00933 Glycosyl hydrolase family 3 N terminal domain JN178_RS08140 PF01923 Cobalamin adenosyltransferase JN178_RS08150 PF02559 CarD-like/TRCF domain JN178_RS08150 PF00270 DEAD/DEAH box helicase JN178_RS08150 PF00271 Helicase conserved C-terminal domain JN178_RS08150 PF03461 TRCF domain JN178_RS08150 PF17757 UvrB interaction domain JN178_RS08160 PF12704 MacB-like periplasmic core domain JN178_RS08160 PF02687 FtsX-like permease family JN178_RS08165 PF00156 Phosphoribosyl transferase domain JN178_RS08170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS08170 PF08448 PAS fold JN178_RS08170 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS08170 PF13188 PAS domain JN178_RS08170 PF00072 Response regulator receiver domain JN178_RS08185 PF03372 Endonuclease/Exonuclease/phosphatase family JN178_RS08245 PF07690 Major Facilitator Superfamily JN178_RS08255 PF00483 Nucleotidyl transferase JN178_RS08260 PF01156 Inosine-uridine preferring nucleoside hydrolase JN178_RS08275 PF00682 HMGL-like JN178_RS08280 PF00364 Biotin-requiring enzyme JN178_RS08280 PF18140 Propionyl-coenzyme A carboxylase BT domain JN178_RS08280 PF02785 Biotin carboxylase C-terminal domain JN178_RS08280 PF00289 Biotin carboxylase, N-terminal domain JN178_RS08280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JN178_RS08285 PF00378 Enoyl-CoA hydratase/isomerase JN178_RS08290 PF01039 Carboxyl transferase domain JN178_RS08295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS08295 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS08295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN178_RS08300 PF13411 MerR HTH family regulatory protein JN178_RS08305 PF02803 Thiolase, C-terminal domain JN178_RS08305 PF00108 Thiolase, N-terminal domain JN178_RS08315 PF00266 Aminotransferase class-V JN178_RS08330 PF00929 Exonuclease JN178_RS08330 PF08411 Exonuclease C-terminal JN178_RS08335 PF00072 Response regulator receiver domain JN178_RS08335 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS08335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JN178_RS08335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS08335 PF00672 HAMP domain JN178_RS08335 PF01627 Hpt domain JN178_RS08340 PF01112 Asparaginase JN178_RS08355 PF11898 Domain of unknown function (DUF3418) JN178_RS08355 PF00270 DEAD/DEAH box helicase JN178_RS08355 PF04408 Helicase associated domain (HA2) JN178_RS08355 PF00271 Helicase conserved C-terminal domain JN178_RS08355 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JN178_RS08370 PF10672 S-adenosylmethionine-dependent methyltransferase JN178_RS08370 PF17785 PUA-like domain JN178_RS08375 PF02801 Beta-ketoacyl synthase, C-terminal domain JN178_RS08375 PF00109 Beta-ketoacyl synthase, N-terminal domain JN178_RS08375 PF00550 Phosphopantetheine attachment site JN178_RS08375 PF08240 Alcohol dehydrogenase GroES-like domain JN178_RS08375 PF08659 KR domain JN178_RS08375 PF16197 Ketoacyl-synthetase C-terminal extension JN178_RS08375 PF00698 Acyl transferase domain JN178_RS08375 PF14765 Polyketide synthase dehydratase JN178_RS08380 PF00075 RNase H JN178_RS08385 PF00929 Exonuclease JN178_RS08415 PF00005 ABC transporter JN178_RS08420 PF12704 MacB-like periplasmic core domain JN178_RS08420 PF02687 FtsX-like permease family JN178_RS08425 PF00375 Sodium:dicarboxylate symporter family JN178_RS08435 PF04996 Succinylarginine dihydrolase JN178_RS08440 PF08272 Topoisomerase I zinc-ribbon-like JN178_RS08440 PF01396 Topoisomerase DNA binding C4 zinc finger JN178_RS08440 PF01751 Toprim domain JN178_RS08440 PF01131 DNA topoisomerase JN178_RS08445 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) JN178_RS08460 PF00356 Bacterial regulatory proteins, lacI family JN178_RS08470 PF04820 Tryptophan halogenase JN178_RS08480 PF01081 KDPG and KHG aldolase JN178_RS08485 PF07690 Major Facilitator Superfamily JN178_RS08490 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JN178_RS08490 PF13378 Enolase C-terminal domain-like JN178_RS08500 PF05721 Phytanoyl-CoA dioxygenase (PhyH) JN178_RS08510 PF17992 Agarase CBM like domain JN178_RS08510 PF02449 Beta-galactosidase JN178_RS08530 PF04820 Tryptophan halogenase JN178_RS08540 PF00722 Glycosyl hydrolases family 16 JN178_RS08545 PF00884 Sulfatase JN178_RS08555 PF02449 Beta-galactosidase JN178_RS08555 PF17992 Agarase CBM like domain JN178_RS08570 PF08240 Alcohol dehydrogenase GroES-like domain JN178_RS08570 PF00107 Zinc-binding dehydrogenase JN178_RS08580 PF00067 Cytochrome P450 JN178_RS08585 PF00111 2Fe-2S iron-sulfur cluster binding domain JN178_RS08590 PF14759 Reductase C-terminal JN178_RS08590 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS08600 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JN178_RS08605 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component JN178_RS08610 PF03480 Bacterial extracellular solute-binding protein, family 7 JN178_RS08615 PF00171 Aldehyde dehydrogenase family JN178_RS08625 PF08240 Alcohol dehydrogenase GroES-like domain JN178_RS08625 PF00107 Zinc-binding dehydrogenase JN178_RS08630 PF13378 Enolase C-terminal domain-like JN178_RS08630 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JN178_RS08635 PF17992 Agarase CBM like domain JN178_RS08635 PF02449 Beta-galactosidase JN178_RS08640 PF08450 SMP-30/Gluconolactonase/LRE-like region JN178_RS08645 PF00083 Sugar (and other) transporter JN178_RS08650 PF00294 pfkB family carbohydrate kinase JN178_RS08665 PF02798 Glutathione S-transferase, N-terminal domain JN178_RS08675 PF03466 LysR substrate binding domain JN178_RS08675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS08680 PF16325 Peptidase family U32 C-terminal domain JN178_RS08680 PF01136 Peptidase family U32 JN178_RS08685 PF00037 4Fe-4S binding domain JN178_RS08690 PF13673 Acetyltransferase (GNAT) domain JN178_RS08700 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JN178_RS08705 PF01799 [2Fe-2S] binding domain JN178_RS08705 PF00111 2Fe-2S iron-sulfur cluster binding domain JN178_RS08715 PF00072 Response regulator receiver domain JN178_RS08715 PF00486 Transcriptional regulatory protein, C terminal JN178_RS08720 PF18698 Histidine kinase sensor domain JN178_RS08720 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS08720 PF00989 PAS fold JN178_RS08720 PF00672 HAMP domain JN178_RS08720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS08750 PF02620 Large ribosomal RNA subunit accumulation protein YceD JN178_RS08755 PF01783 Ribosomal L32p protein family JN178_RS08760 PF02504 Fatty acid synthesis protein JN178_RS08765 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JN178_RS08765 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JN178_RS08770 PF00698 Acyl transferase domain JN178_RS08780 PF00550 Phosphopantetheine attachment site JN178_RS08785 PF02801 Beta-ketoacyl synthase, C-terminal domain JN178_RS08785 PF00109 Beta-ketoacyl synthase, N-terminal domain JN178_RS08790 PF01063 Amino-transferase class IV JN178_RS08795 PF02618 YceG-like family JN178_RS08800 PF02223 Thymidylate kinase JN178_RS08805 PF09115 DNA polymerase III, delta subunit, C terminal JN178_RS08810 PF01026 TatD related DNase JN178_RS08815 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JN178_RS08815 PF01243 Pyridoxamine 5'-phosphate oxidase JN178_RS08820 PF13460 NAD(P)H-binding JN178_RS08845 PF00815 Histidinol dehydrogenase JN178_RS08850 PF00356 Bacterial regulatory proteins, lacI family JN178_RS08860 PF03328 HpcH/HpaI aldolase/citrate lyase family JN178_RS08880 PF00474 Sodium:solute symporter family JN178_RS08890 PF07715 TonB-dependent Receptor Plug Domain JN178_RS08890 PF00593 TonB dependent receptor JN178_RS08925 PF02810 SEC-C motif JN178_RS08935 PF09335 SNARE associated Golgi protein JN178_RS08940 PF01794 Ferric reductase like transmembrane component JN178_RS08945 PF00174 Oxidoreductase molybdopterin binding domain JN178_RS08955 PF01966 HD domain JN178_RS08955 PF13286 Phosphohydrolase-associated domain JN178_RS08965 PF00155 Aminotransferase class I and II JN178_RS08980 PF00873 AcrB/AcrD/AcrF family JN178_RS08985 PF00873 AcrB/AcrD/AcrF family JN178_RS08990 PF13533 Biotin-lipoyl like JN178_RS08995 PF02566 OsmC-like protein JN178_RS09000 PF13509 S1 domain JN178_RS09000 PF17783 CvfB-like winged helix domain JN178_RS09005 PF03746 LamB/YcsF family JN178_RS09010 PF02682 Carboxyltransferase domain, subdomain C and D JN178_RS09015 PF02626 Carboxyltransferase domain, subdomain A and B JN178_RS09020 PF01063 Amino-transferase class IV JN178_RS09025 PF01475 Ferric uptake regulator family JN178_RS09035 PF00258 Flavodoxin JN178_RS09045 PF00561 alpha/beta hydrolase fold JN178_RS09060 PF01012 Electron transfer flavoprotein domain JN178_RS09065 PF01012 Electron transfer flavoprotein domain JN178_RS09065 PF00766 Electron transfer flavoprotein FAD-binding domain JN178_RS09075 PF13533 Biotin-lipoyl like JN178_RS09080 PF00873 AcrB/AcrD/AcrF family JN178_RS09090 PF07715 TonB-dependent Receptor Plug Domain JN178_RS09090 PF00593 TonB dependent receptor JN178_RS09095 PF01965 DJ-1/PfpI family JN178_RS09095 PF12833 Helix-turn-helix domain JN178_RS09100 PF12806 Acetyl-CoA dehydrogenase C-terminal like JN178_RS09100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS09100 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS09100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN178_RS09115 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JN178_RS09125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS09125 PF00672 HAMP domain JN178_RS09135 PF00155 Aminotransferase class I and II JN178_RS09150 PF01053 Cys/Met metabolism PLP-dependent enzyme JN178_RS09160 PF02525 Flavodoxin-like fold JN178_RS09165 PF00255 Glutathione peroxidase JN178_RS09180 PF00378 Enoyl-CoA hydratase/isomerase JN178_RS09190 PF02567 Phenazine biosynthesis-like protein JN178_RS09315 PF03691 Uncharacterised protein family (UPF0167) JN178_RS09330 PF01548 Transposase JN178_RS09330 PF02371 Transposase IS116/IS110/IS902 family JN178_RS09350 PF00291 Pyridoxal-phosphate dependent enzyme JN178_RS09370 PF01554 MatE JN178_RS09375 PF00994 Probable molybdopterin binding domain JN178_RS09375 PF03453 MoeA N-terminal region (domain I and II) JN178_RS09375 PF03454 MoeA C-terminal region (domain IV) JN178_RS09380 PF13419 Haloacid dehalogenase-like hydrolase JN178_RS09385 PF00128 Alpha amylase, catalytic domain JN178_RS09400 PF00485 Phosphoribulokinase / Uridine kinase family JN178_RS09405 PF08003 Protein of unknown function (DUF1698) JN178_RS09410 PF13649 Methyltransferase domain JN178_RS09415 PF00196 Bacterial regulatory proteins, luxR family JN178_RS09415 PF00072 Response regulator receiver domain JN178_RS09420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN178_RS09420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS09420 PF09317 Domain of unknown function (DUF1974) JN178_RS09420 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS09430 PF00551 Formyl transferase JN178_RS09435 PF02769 AIR synthase related protein, C-terminal domain JN178_RS09435 PF00586 AIR synthase related protein, N-terminal domain JN178_RS09445 PF00308 Bacterial dnaA protein JN178_RS09460 PF03358 NADPH-dependent FMN reductase JN178_RS09465 PF03960 ArsC family JN178_RS09475 PF13181 Tetratricopeptide repeat JN178_RS09475 PF01435 Peptidase family M48 JN178_RS09480 PF01594 AI-2E family transporter JN178_RS09485 PF03466 LysR substrate binding domain JN178_RS09485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS09500 PF00578 AhpC/TSA family JN178_RS09510 PF00701 Dihydrodipicolinate synthetase family JN178_RS09515 PF06804 NlpB/DapX lipoprotein JN178_RS09520 PF01259 SAICAR synthetase JN178_RS09525 PF00892 EamA-like transporter family JN178_RS09530 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS09530 PF03707 Bacterial signalling protein N terminal repeat JN178_RS09530 PF00563 EAL domain JN178_RS09535 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS09535 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JN178_RS09545 PF00487 Fatty acid desaturase JN178_RS09560 PF03466 LysR substrate binding domain JN178_RS09560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS09570 PF00111 2Fe-2S iron-sulfur cluster binding domain JN178_RS09575 PF00268 Ribonucleotide reductase, small chain JN178_RS09580 PF00317 Ribonucleotide reductase, all-alpha domain JN178_RS09580 PF02867 Ribonucleotide reductase, barrel domain JN178_RS09580 PF03477 ATP cone domain JN178_RS09590 PF03989 DNA gyrase C-terminal domain, beta-propeller JN178_RS09590 PF00521 DNA gyrase/topoisomerase IV, subunit A JN178_RS09595 PF00266 Aminotransferase class-V JN178_RS09600 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JN178_RS09605 PF02224 Cytidylate kinase JN178_RS09610 PF00575 S1 RNA binding domain JN178_RS09615 PF00216 Bacterial DNA-binding protein JN178_RS09625 PF06305 Lipopolysaccharide assembly protein A domain JN178_RS09630 PF18073 Rubredoxin metal binding domain JN178_RS09635 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JN178_RS09640 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JN178_RS09640 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JN178_RS09645 PF01037 Lrp/AsnC ligand binding domain JN178_RS09650 PF01580 FtsK/SpoIIIE family JN178_RS09650 PF09397 Ftsk gamma domain JN178_RS09650 PF17854 FtsK alpha domain JN178_RS09650 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JN178_RS09655 PF03548 Outer membrane lipoprotein carrier protein LolA JN178_RS09660 PF12002 MgsA AAA+ ATPase C terminal JN178_RS09660 PF16193 AAA C-terminal domain JN178_RS09660 PF00004 ATPase family associated with various cellular activities (AAA) JN178_RS09665 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JN178_RS09670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JN178_RS09670 PF02403 Seryl-tRNA synthetase N-terminal domain JN178_RS09705 PF04358 DsrC like protein JN178_RS09720 PF02635 DsrE/DsrF-like family JN178_RS09725 PF01027 Inhibitor of apoptosis-promoting Bax1 JN178_RS09750 PF03466 LysR substrate binding domain JN178_RS09750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS09755 PF07681 DoxX JN178_RS09760 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JN178_RS09775 PF03781 Sulfatase-modifying factor enzyme 1 JN178_RS09775 PF12867 DinB superfamily JN178_RS09785 PF02678 Pirin JN178_RS09785 PF17954 Quercetinase C-terminal cupin domain JN178_RS09790 PF00196 Bacterial regulatory proteins, luxR family JN178_RS09790 PF00072 Response regulator receiver domain JN178_RS09795 PF08459 UvrC Helix-hairpin-helix N-terminal JN178_RS09795 PF02151 UvrB/uvrC motif JN178_RS09795 PF01541 GIY-YIG catalytic domain JN178_RS09800 PF01066 CDP-alcohol phosphatidyltransferase JN178_RS09830 PF12792 CSS motif domain associated with EAL JN178_RS09830 PF00563 EAL domain JN178_RS09835 PF03942 DTW domain JN178_RS09840 PF08534 Redoxin JN178_RS09845 PF00581 Rhodanese-like domain JN178_RS09850 PF02146 Sir2 family JN178_RS09855 PF01810 LysE type translocator JN178_RS09875 PF01734 Patatin-like phospholipase JN178_RS09880 PF01171 PP-loop family JN178_RS09885 PF00582 Universal stress protein family JN178_RS09890 PF00027 Cyclic nucleotide-binding domain JN178_RS09890 PF13545 Crp-like helix-turn-helix domain JN178_RS09905 PF00403 Heavy-metal-associated domain JN178_RS09915 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JN178_RS09915 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JN178_RS09930 PF00115 Cytochrome C and Quinol oxidase polypeptide I JN178_RS09940 PF00210 Ferritin-like domain JN178_RS09945 PF00210 Ferritin-like domain JN178_RS09950 PF00999 Sodium/hydrogen exchanger family JN178_RS09955 PF01645 Conserved region in glutamate synthase JN178_RS09965 PF00582 Universal stress protein family JN178_RS09970 PF01219 Prokaryotic diacylglycerol kinase JN178_RS09980 PF02899 Phage integrase, N-terminal SAM-like domain JN178_RS09980 PF00589 Phage integrase family JN178_RS09990 PF00486 Transcriptional regulatory protein, C terminal JN178_RS09990 PF00072 Response regulator receiver domain JN178_RS09995 PF00672 HAMP domain JN178_RS09995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS09995 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS09995 PF16750 Sensor domain of 2-component histidine kinase JN178_RS10000 PF08267 Cobalamin-independent synthase, N-terminal domain JN178_RS10000 PF01717 Cobalamin-independent synthase, Catalytic domain JN178_RS10025 PF01261 Xylose isomerase-like TIM barrel JN178_RS10035 PF13193 AMP-binding enzyme C-terminal domain JN178_RS10035 PF00501 AMP-binding enzyme JN178_RS10040 PF06276 Ferric iron reductase FhuF-like transporter JN178_RS10040 PF04183 IucA / IucC family JN178_RS10045 PF04183 IucA / IucC family JN178_RS10045 PF06276 Ferric iron reductase FhuF-like transporter JN178_RS10050 PF01554 MatE JN178_RS10055 PF07715 TonB-dependent Receptor Plug Domain JN178_RS10055 PF00593 TonB dependent receptor JN178_RS10065 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JN178_RS10070 PF03441 FAD binding domain of DNA photolyase JN178_RS10070 PF00875 DNA photolyase JN178_RS10075 PF03441 FAD binding domain of DNA photolyase JN178_RS10075 PF00875 DNA photolyase JN178_RS10080 PF00875 DNA photolyase JN178_RS10080 PF03441 FAD binding domain of DNA photolyase JN178_RS10090 PF07977 FabA-like domain JN178_RS10095 PF04957 Ribosome modulation factor JN178_RS10105 PF00005 ABC transporter JN178_RS10105 PF16326 ABC transporter C-terminal domain JN178_RS10105 PF12848 ABC transporter JN178_RS10115 PF01170 Putative RNA methylase family UPF0020 JN178_RS10115 PF10672 S-adenosylmethionine-dependent methyltransferase JN178_RS10115 PF02926 THUMP domain JN178_RS10120 PF01180 Dihydroorotate dehydrogenase JN178_RS10125 PF05088 Bacterial NAD-glutamate dehydrogenase JN178_RS10140 PF07044 Protein of unknown function (DUF1329) JN178_RS10155 PF11940 Domain of unknown function (DUF3458) Ig-like fold JN178_RS10155 PF01433 Peptidase family M1 domain JN178_RS10155 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JN178_RS10160 PF03553 Na+/H+ antiporter family JN178_RS10165 PF00209 Sodium:neurotransmitter symporter family JN178_RS10170 PF00595 PDZ domain JN178_RS10170 PF03572 Peptidase family S41 JN178_RS10170 PF11818 C-terminal domain of tail specific protease (DUF3340) JN178_RS10170 PF17804 Tail specific protease N-terminal domain JN178_RS10175 PF04352 ProQ/FINO family JN178_RS10175 PF17516 ProQ C-terminal domain JN178_RS10185 PF13185 GAF domain JN178_RS10195 PF00266 Aminotransferase class-V JN178_RS10200 PF00132 Bacterial transferase hexapeptide (six repeats) JN178_RS10210 PF00069 Protein kinase domain JN178_RS10215 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JN178_RS10220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JN178_RS10220 PF02817 e3 binding domain JN178_RS10220 PF00364 Biotin-requiring enzyme JN178_RS10225 PF02780 Transketolase, C-terminal domain JN178_RS10225 PF02779 Transketolase, pyrimidine binding domain JN178_RS10230 PF00676 Dehydrogenase E1 component JN178_RS10235 PF13860 FlgD Ig-like domain JN178_RS10235 PF05922 Peptidase inhibitor I9 JN178_RS10235 PF02225 PA domain JN178_RS10235 PF00082 Subtilase family JN178_RS10240 PF02646 RmuC family JN178_RS10250 PF04715 Anthranilate synthase component I, N terminal region JN178_RS10250 PF00425 chorismate binding enzyme JN178_RS10255 PF00293 NUDIX domain JN178_RS10260 PF03315 Serine dehydratase beta chain JN178_RS10260 PF03313 Serine dehydratase alpha chain JN178_RS10265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS10265 PF03466 LysR substrate binding domain JN178_RS10270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS10285 PF03466 LysR substrate binding domain JN178_RS10285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS10290 PF01144 Coenzyme A transferase JN178_RS10295 PF01144 Coenzyme A transferase JN178_RS10300 PF00270 DEAD/DEAH box helicase JN178_RS10300 PF00271 Helicase conserved C-terminal domain JN178_RS10310 PF00581 Rhodanese-like domain JN178_RS10310 PF17773 UPF0176 acylphosphatase like domain JN178_RS10320 PF00989 PAS fold JN178_RS10320 PF01627 Hpt domain JN178_RS10320 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS10320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS10320 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN178_RS10320 PF00072 Response regulator receiver domain JN178_RS10325 PF06719 AraC-type transcriptional regulator N-terminus JN178_RS10325 PF12833 Helix-turn-helix domain JN178_RS10330 PF12146 Serine aminopeptidase, S33 JN178_RS10340 PF00365 Phosphofructokinase JN178_RS10350 PF00072 Response regulator receiver domain JN178_RS10350 PF04397 LytTr DNA-binding domain JN178_RS10355 PF07694 5TMR of 5TMR-LYT JN178_RS10355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS10355 PF06580 Histidine kinase JN178_RS10385 PF04245 37-kD nucleoid-associated bacterial protein JN178_RS10390 PF07208 Protein of unknown function (DUF1414) JN178_RS10395 PF11893 Domain of unknown function (DUF3413) JN178_RS10395 PF00884 Sulfatase JN178_RS10405 PF13847 Methyltransferase domain JN178_RS10410 PF00378 Enoyl-CoA hydratase/isomerase JN178_RS10415 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS10415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN178_RS10415 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS10425 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JN178_RS10425 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JN178_RS10430 PF00255 Glutathione peroxidase JN178_RS10435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JN178_RS10435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JN178_RS10440 PF13847 Methyltransferase domain JN178_RS10445 PF01784 NIF3 (NGG1p interacting factor 3) JN178_RS10460 PF01343 Peptidase family S49 JN178_RS10460 PF08496 Peptidase family S49 N-terminal JN178_RS10465 PF01804 Penicillin amidase JN178_RS10470 PF12262 Bacterial virulence factor lipase N-terminal JN178_RS10475 PF00106 short chain dehydrogenase JN178_RS10480 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JN178_RS10480 PF00749 tRNA synthetases class I (E and Q), catalytic domain JN178_RS10485 PF00356 Bacterial regulatory proteins, lacI family JN178_RS10490 PF00686 Starch binding domain JN178_RS10490 PF00128 Alpha amylase, catalytic domain JN178_RS10500 PF00128 Alpha amylase, catalytic domain JN178_RS10500 PF10438 Cyclo-malto-dextrinase C-terminal domain JN178_RS10500 PF09087 Cyclomaltodextrinase, N-terminal JN178_RS10505 PF16657 Maltogenic Amylase, C-terminal domain JN178_RS10505 PF02903 Alpha amylase, N-terminal ig-like domain JN178_RS10505 PF00128 Alpha amylase, catalytic domain JN178_RS10510 PF00593 TonB dependent receptor JN178_RS10510 PF07715 TonB-dependent Receptor Plug Domain JN178_RS10525 PF01734 Patatin-like phospholipase JN178_RS10530 PF03714 Bacterial pullanase-associated domain JN178_RS10530 PF18494 Pullulanase Ins domain JN178_RS10530 PF11852 Domain of unknown function (DUF3372) JN178_RS10530 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JN178_RS10530 PF17967 Pullulanase N2 domain JN178_RS10540 PF04820 Tryptophan halogenase JN178_RS10545 PF04820 Tryptophan halogenase JN178_RS10570 PF02629 CoA binding domain JN178_RS10570 PF00549 CoA-ligase JN178_RS10575 PF08442 ATP-grasp domain JN178_RS10575 PF00549 CoA-ligase JN178_RS10580 PF02817 e3 binding domain JN178_RS10580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JN178_RS10580 PF00364 Biotin-requiring enzyme JN178_RS10585 PF16078 2-oxoglutarate dehydrogenase N-terminus JN178_RS10585 PF00676 Dehydrogenase E1 component JN178_RS10585 PF16870 2-oxoglutarate dehydrogenase C-terminal JN178_RS10585 PF02779 Transketolase, pyrimidine binding domain JN178_RS10590 PF13085 2Fe-2S iron-sulfur cluster binding domain JN178_RS10595 PF02910 Fumarate reductase flavoprotein C-term JN178_RS10595 PF00890 FAD binding domain JN178_RS10600 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JN178_RS10605 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JN178_RS10610 PF00285 Citrate synthase, C-terminal domain JN178_RS10625 PF02678 Pirin JN178_RS10625 PF05726 Pirin C-terminal cupin domain JN178_RS10630 PF13409 Glutathione S-transferase, N-terminal domain JN178_RS10635 PF01266 FAD dependent oxidoreductase JN178_RS10640 PF00899 ThiF family JN178_RS10660 PF04055 Radical SAM superfamily JN178_RS10660 PF18693 TRAM domain JN178_RS10660 PF00919 Uncharacterized protein family UPF0004 JN178_RS10665 PF00106 short chain dehydrogenase JN178_RS10670 PF02348 Cytidylyltransferase JN178_RS10675 PF03966 Trm112p-like protein JN178_RS10680 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JN178_RS10685 PF00664 ABC transporter transmembrane region JN178_RS10685 PF00005 ABC transporter JN178_RS10690 PF03772 Competence protein JN178_RS10690 PF00753 Metallo-beta-lactamase superfamily JN178_RS10700 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JN178_RS10700 PF03120 NAD-dependent DNA ligase OB-fold domain JN178_RS10700 PF01653 NAD-dependent DNA ligase adenylation domain JN178_RS10700 PF00533 BRCA1 C Terminus (BRCT) domain JN178_RS10700 PF12826 Helix-hairpin-helix motif JN178_RS10705 PF04354 ZipA, C-terminal FtsZ-binding domain JN178_RS10710 PF06470 SMC proteins Flexible Hinge Domain JN178_RS10710 PF02463 RecF/RecN/SMC N terminal domain JN178_RS10725 PF13181 Tetratricopeptide repeat JN178_RS10725 PF07719 Tetratricopeptide repeat JN178_RS10750 PF03544 Gram-negative bacterial TonB protein C-terminal JN178_RS10800 PF13649 Methyltransferase domain JN178_RS10895 PF03725 3' exoribonuclease family, domain 2 JN178_RS10895 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JN178_RS10895 PF00013 KH domain JN178_RS10895 PF00575 S1 RNA binding domain JN178_RS10895 PF01138 3' exoribonuclease family, domain 1 JN178_RS10910 PF00171 Aldehyde dehydrogenase family JN178_RS10915 PF00696 Amino acid kinase family JN178_RS10920 PF00474 Sodium:solute symporter family JN178_RS10950 PF00781 Diacylglycerol kinase catalytic domain JN178_RS10950 PF02142 MGS-like domain JN178_RS10955 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JN178_RS10955 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JN178_RS10965 PF01679 Proteolipid membrane potential modulator JN178_RS10970 PF00563 EAL domain JN178_RS10970 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS10970 PF03707 Bacterial signalling protein N terminal repeat JN178_RS10975 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS10985 PF03840 Preprotein translocase SecG subunit JN178_RS10990 PF00121 Triosephosphate isomerase JN178_RS10995 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JN178_RS10995 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JN178_RS10995 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JN178_RS10995 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JN178_RS11000 PF00809 Pterin binding enzyme JN178_RS11005 PF01434 Peptidase family M41 JN178_RS11005 PF00004 ATPase family associated with various cellular activities (AAA) JN178_RS11005 PF17862 AAA+ lid domain JN178_RS11005 PF06480 FtsH Extracellular JN178_RS11010 PF01728 FtsJ-like methyltransferase JN178_RS11015 PF01985 CRS1 / YhbY (CRM) domain JN178_RS11020 PF00106 short chain dehydrogenase JN178_RS11030 PF05362 Lon protease (S16) C-terminal proteolytic domain JN178_RS11030 PF13654 AAA domain JN178_RS11040 PF00133 tRNA synthetases class I (I, L, M and V) JN178_RS11040 PF13603 Leucyl-tRNA synthetase, Domain 2 JN178_RS11040 PF08264 Anticodon-binding domain of tRNA JN178_RS11045 PF04390 Lipopolysaccharide-assembly JN178_RS11050 PF14840 Processivity clamp loader gamma complex DNA pol III C-term JN178_RS11050 PF06144 DNA polymerase III, delta subunit JN178_RS11055 PF01467 Cytidylyltransferase-like JN178_RS11065 PF02590 Predicted SPOUT methyltransferase JN178_RS11070 PF03717 Penicillin-binding Protein dimerisation domain JN178_RS11070 PF00905 Penicillin binding protein transpeptidase domain JN178_RS11075 PF01098 Cell cycle protein JN178_RS11080 PF05036 Sporulation related domain JN178_RS11080 PF03330 Lytic transglycolase JN178_RS11085 PF07943 Penicillin-binding protein 5, C-terminal domain JN178_RS11085 PF00768 D-alanyl-D-alanine carboxypeptidase JN178_RS11090 PF04359 Protein of unknown function (DUF493) JN178_RS11095 PF03099 Biotin/lipoate A/B protein ligase family JN178_RS11100 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JN178_RS11100 PF04055 Radical SAM superfamily JN178_RS11105 PF00710 Asparaginase, N-terminal JN178_RS11105 PF17763 Glutaminase/Asparaginase C-terminal domain JN178_RS11125 PF00881 Nitroreductase family JN178_RS11140 PF01343 Peptidase family S49 JN178_RS11145 PF17283 SprT-like zinc ribbon domain JN178_RS11145 PF10263 SprT-like family JN178_RS11150 PF04217 Protein of unknown function, DUF412 JN178_RS11155 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS11160 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JN178_RS11165 PF04377 Arginine-tRNA-protein transferase, C terminus JN178_RS11165 PF04376 Arginine-tRNA-protein transferase, N terminus JN178_RS11170 PF01176 Translation initiation factor 1A / IF-1 JN178_RS11175 PF17871 AAA lid domain JN178_RS11175 PF00004 ATPase family associated with various cellular activities (AAA) JN178_RS11175 PF07724 AAA domain (Cdc48 subfamily) JN178_RS11175 PF02861 Clp amino terminal domain, pathogenicity island component JN178_RS11175 PF10431 C-terminal, D2-small domain, of ClpB protein JN178_RS11180 PF02617 ATP-dependent Clp protease adaptor protein ClpS JN178_RS11185 PF00313 'Cold-shock' DNA-binding domain JN178_RS11190 PF03971 Monomeric isocitrate dehydrogenase JN178_RS11195 PF00849 RNA pseudouridylate synthase JN178_RS11205 PF04356 Protein of unknown function (DUF489) JN178_RS11210 PF00206 Lyase JN178_RS11210 PF08328 Adenylosuccinate lyase C-terminal JN178_RS11220 PF08007 Cupin superfamily protein JN178_RS11240 PF00111 2Fe-2S iron-sulfur cluster binding domain JN178_RS11240 PF01799 [2Fe-2S] binding domain JN178_RS11245 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JN178_RS11255 PF02896 PEP-utilising enzyme, TIM barrel domain JN178_RS11255 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JN178_RS11255 PF00391 PEP-utilising enzyme, mobile domain JN178_RS11260 PF03618 Kinase/pyrophosphorylase JN178_RS11270 PF13181 Tetratricopeptide repeat JN178_RS11275 PF00593 TonB dependent receptor JN178_RS11275 PF07715 TonB-dependent Receptor Plug Domain JN178_RS11280 PF02028 BCCT, betaine/carnitine/choline family transporter JN178_RS11290 PF03658 RnfH family Ubiquitin JN178_RS11295 PF03364 Polyketide cyclase / dehydrase and lipid transport JN178_RS11300 PF01668 SmpB protein JN178_RS11305 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JN178_RS11315 PF17158 Membrane-associated sensor, integral membrane domain JN178_RS11315 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS11325 PF00005 ABC transporter JN178_RS11340 PF07715 TonB-dependent Receptor Plug Domain JN178_RS11340 PF00593 TonB dependent receptor JN178_RS11350 PF02525 Flavodoxin-like fold JN178_RS11355 PF03466 LysR substrate binding domain JN178_RS11355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS11385 PF14765 Polyketide synthase dehydratase JN178_RS11385 PF00550 Phosphopantetheine attachment site JN178_RS11385 PF08659 KR domain JN178_RS11385 PF02801 Beta-ketoacyl synthase, C-terminal domain JN178_RS11385 PF00109 Beta-ketoacyl synthase, N-terminal domain JN178_RS11385 PF09277 Erythronolide synthase, docking JN178_RS11385 PF08990 Erythronolide synthase docking JN178_RS11385 PF00698 Acyl transferase domain JN178_RS11385 PF16197 Ketoacyl-synthetase C-terminal extension JN178_RS11385 PF08240 Alcohol dehydrogenase GroES-like domain JN178_RS11395 PF01066 CDP-alcohol phosphatidyltransferase JN178_RS11400 PF00005 ABC transporter JN178_RS11405 PF00528 Binding-protein-dependent transport system inner membrane component JN178_RS11410 PF13416 Bacterial extracellular solute-binding protein JN178_RS11415 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS11415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JN178_RS11420 PF07715 TonB-dependent Receptor Plug Domain JN178_RS11420 PF00593 TonB dependent receptor JN178_RS11435 PF11842 Domain of unknown function (DUF3362) JN178_RS11435 PF04055 Radical SAM superfamily JN178_RS11435 PF08497 Radical SAM N-terminal JN178_RS11475 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS11475 PF13192 Thioredoxin domain JN178_RS11480 PF00578 AhpC/TSA family JN178_RS11480 PF10417 C-terminal domain of 1-Cys peroxiredoxin JN178_RS11505 PF00795 Carbon-nitrogen hydrolase JN178_RS11505 PF00583 Acetyltransferase (GNAT) family JN178_RS11515 PF00849 RNA pseudouridylate synthase JN178_RS11515 PF01479 S4 domain JN178_RS11520 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS11520 PF00563 EAL domain JN178_RS11520 PF03707 Bacterial signalling protein N terminal repeat JN178_RS11520 PF00563 EAL domain JN178_RS11520 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS11520 PF03707 Bacterial signalling protein N terminal repeat JN178_RS11525 PF00312 Ribosomal protein S15 JN178_RS11535 PF09157 Pseudouridine synthase II TruB, C-terminal JN178_RS11535 PF16198 tRNA pseudouridylate synthase B C-terminal domain JN178_RS11535 PF01509 TruB family pseudouridylate synthase (N terminal domain) JN178_RS11540 PF02033 Ribosome-binding factor A JN178_RS11545 PF04760 Translation initiation factor IF-2, N-terminal region JN178_RS11545 PF11987 Translation-initiation factor 2 JN178_RS11545 PF08364 Bacterial translation initiation factor IF-2 associated region JN178_RS11545 PF00009 Elongation factor Tu GTP binding domain JN178_RS11550 PF08529 NusA N-terminal domain JN178_RS11550 PF00575 S1 RNA binding domain JN178_RS11550 PF13184 NusA-like KH domain JN178_RS11555 PF17384 RimP C-terminal SH3 domain JN178_RS11555 PF02576 RimP N-terminal domain JN178_RS11560 PF00072 Response regulator receiver domain JN178_RS11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS11565 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS11565 PF01627 Hpt domain JN178_RS11565 PF00072 Response regulator receiver domain JN178_RS11590 PF00672 HAMP domain JN178_RS11590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS11590 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS11595 PF00072 Response regulator receiver domain JN178_RS11595 PF00486 Transcriptional regulatory protein, C terminal JN178_RS11610 PF01329 Pterin 4 alpha carbinolamine dehydratase JN178_RS11615 PF07715 TonB-dependent Receptor Plug Domain JN178_RS11615 PF00593 TonB dependent receptor JN178_RS11620 PF00924 Mechanosensitive ion channel JN178_RS11630 PF01575 MaoC like domain JN178_RS11635 PF03466 LysR substrate binding domain JN178_RS11635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS11675 PF00701 Dihydrodipicolinate synthetase family JN178_RS11700 PF00561 alpha/beta hydrolase fold JN178_RS11705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN178_RS11705 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS11705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS11705 PF12806 Acetyl-CoA dehydrogenase C-terminal like JN178_RS11710 PF02803 Thiolase, C-terminal domain JN178_RS11710 PF00108 Thiolase, N-terminal domain JN178_RS11715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JN178_RS11715 PF00378 Enoyl-CoA hydratase/isomerase JN178_RS11715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JN178_RS11720 PF00561 alpha/beta hydrolase fold JN178_RS11735 PF08447 PAS fold JN178_RS11735 PF13426 PAS domain JN178_RS11735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS11740 PF00128 Alpha amylase, catalytic domain JN178_RS11745 PF00107 Zinc-binding dehydrogenase JN178_RS11745 PF08240 Alcohol dehydrogenase GroES-like domain JN178_RS11755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS11755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN178_RS11755 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS11765 PF00593 TonB dependent receptor JN178_RS11765 PF07715 TonB-dependent Receptor Plug Domain JN178_RS11785 PF06969 HemN C-terminal domain JN178_RS11785 PF04055 Radical SAM superfamily JN178_RS11790 PF00005 ABC transporter JN178_RS11790 PF03459 TOBE domain JN178_RS11795 PF00528 Binding-protein-dependent transport system inner membrane component JN178_RS11805 PF02391 MoaE protein JN178_RS11810 PF02597 ThiS family JN178_RS11815 PF01967 MoaC family JN178_RS11820 PF00994 Probable molybdopterin binding domain JN178_RS11825 PF00899 ThiF family JN178_RS11845 PF00155 Aminotransferase class I and II JN178_RS11850 PF03435 Saccharopine dehydrogenase NADP binding domain JN178_RS11860 PF00970 Oxidoreductase FAD-binding domain JN178_RS11860 PF00042 Globin JN178_RS11860 PF00175 Oxidoreductase NAD-binding domain JN178_RS11870 PF01590 GAF domain JN178_RS11870 PF00158 Sigma-54 interaction domain JN178_RS11890 PF01810 LysE type translocator JN178_RS11895 PF00155 Aminotransferase class I and II JN178_RS11895 PF00392 Bacterial regulatory proteins, gntR family JN178_RS11910 PF13538 UvrD-like helicase C-terminal domain JN178_RS11915 PF12705 PD-(D/E)XK nuclease superfamily JN178_RS11915 PF00580 UvrD/REP helicase N-terminal domain JN178_RS11915 PF13361 UvrD-like helicase C-terminal domain JN178_RS11920 PF17946 RecC C-terminal domain JN178_RS11930 PF00501 AMP-binding enzyme JN178_RS11935 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS11935 PF03707 Bacterial signalling protein N terminal repeat JN178_RS11935 PF00563 EAL domain JN178_RS11940 PF12706 Beta-lactamase superfamily domain JN178_RS11940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JN178_RS11940 PF17770 Ribonuclease J C-terminal domain JN178_RS11955 PF03466 LysR substrate binding domain JN178_RS11955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS11975 PF01022 Bacterial regulatory protein, arsR family JN178_RS11985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS11985 PF03466 LysR substrate binding domain JN178_RS11990 PF06055 Exopolysaccharide synthesis, ExoD JN178_RS11995 PF00158 Sigma-54 interaction domain JN178_RS11995 PF00072 Response regulator receiver domain JN178_RS11995 PF02954 Bacterial regulatory protein, Fis family JN178_RS12005 PF08446 PAS fold JN178_RS12005 PF01590 GAF domain JN178_RS12005 PF00360 Phytochrome region JN178_RS12005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS12005 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS12010 PF00072 Response regulator receiver domain JN178_RS12015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS12015 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS12015 PF09308 LuxQ, periplasmic JN178_RS12015 PF00072 Response regulator receiver domain JN178_RS12050 PF07043 Protein of unknown function (DUF1328) JN178_RS12070 PF07023 Protein of unknown function (DUF1315) JN178_RS12080 PF01235 Sodium:alanine symporter family JN178_RS12085 PF00246 Zinc carboxypeptidase JN178_RS12085 PF18027 Cytosolic carboxypeptidase N-terminal domain JN178_RS12090 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JN178_RS12090 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JN178_RS12100 PF01641 SelR domain JN178_RS12105 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JN178_RS12105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JN178_RS12110 PF00128 Alpha amylase, catalytic domain JN178_RS12110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JN178_RS12115 PF00128 Alpha amylase, catalytic domain JN178_RS12115 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JN178_RS12115 PF02806 Alpha amylase, C-terminal all-beta domain JN178_RS12120 PF02446 4-alpha-glucanotransferase JN178_RS12125 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JN178_RS12125 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JN178_RS12130 PF01263 Aldose 1-epimerase JN178_RS12135 PF01081 KDPG and KHG aldolase JN178_RS12140 PF02685 Glucokinase JN178_RS12145 PF00920 Dehydratase family JN178_RS12150 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JN178_RS12155 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JN178_RS12155 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JN178_RS12160 PF01418 Helix-turn-helix domain, rpiR family JN178_RS12160 PF01380 SIS domain JN178_RS12165 PF00224 Pyruvate kinase, barrel domain JN178_RS12165 PF02887 Pyruvate kinase, alpha/beta domain JN178_RS12195 PF09456 RcsC Alpha-Beta-Loop (ABL) JN178_RS12195 PF00072 Response regulator receiver domain JN178_RS12195 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS12195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS12210 PF04231 Endonuclease I JN178_RS12215 PF01433 Peptidase family M1 domain JN178_RS12215 PF11838 ERAP1-like C-terminal domain JN178_RS12220 PF00672 HAMP domain JN178_RS12220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS12220 PF02743 Cache domain JN178_RS12240 PF03466 LysR substrate binding domain JN178_RS12240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS12250 PF00465 Iron-containing alcohol dehydrogenase JN178_RS12255 PF08447 PAS fold JN178_RS12255 PF08448 PAS fold JN178_RS12255 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS12255 PF00563 EAL domain JN178_RS12260 PF00881 Nitroreductase family JN178_RS12265 PF06628 Catalase-related immune-responsive JN178_RS12265 PF00199 Catalase JN178_RS12270 PF11849 Domain of unknown function (DUF3369) JN178_RS12275 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS12275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS12275 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN178_RS12280 PF01063 Amino-transferase class IV JN178_RS12310 PF00881 Nitroreductase family JN178_RS12330 PF01145 SPFH domain / Band 7 family JN178_RS12360 PF03358 NADPH-dependent FMN reductase JN178_RS12365 PF05726 Pirin C-terminal cupin domain JN178_RS12365 PF02678 Pirin JN178_RS12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS12370 PF03466 LysR substrate binding domain JN178_RS12390 PF00939 Sodium:sulfate symporter transmembrane region JN178_RS12395 PF00692 dUTPase JN178_RS12400 PF10609 NUBPL iron-transfer P-loop NTPase JN178_RS12405 PF09334 tRNA synthetases class I (M) JN178_RS12405 PF08264 Anticodon-binding domain of tRNA JN178_RS12405 PF01588 Putative tRNA binding domain JN178_RS12410 PF08241 Methyltransferase domain JN178_RS12415 PF16123 Hydroxyacylglutathione hydrolase C-terminus JN178_RS12415 PF00753 Metallo-beta-lactamase superfamily JN178_RS12420 PF01464 Transglycosylase SLT domain JN178_RS12420 PF01476 LysM domain JN178_RS12440 PF01406 tRNA synthetases class I (C) catalytic domain JN178_RS12440 PF09190 DALR domain JN178_RS12445 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JN178_RS12450 PF00149 Calcineurin-like phosphoesterase JN178_RS12455 PF00245 Alkaline phosphatase JN178_RS12460 PF00245 Alkaline phosphatase JN178_RS12475 PF01145 SPFH domain / Band 7 family JN178_RS12475 PF15975 Flotillin JN178_RS12485 PF00005 ABC transporter JN178_RS12500 PF00486 Transcriptional regulatory protein, C terminal JN178_RS12500 PF00072 Response regulator receiver domain JN178_RS12505 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS12505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS12505 PF00672 HAMP domain JN178_RS12535 PF08240 Alcohol dehydrogenase GroES-like domain JN178_RS12535 PF00107 Zinc-binding dehydrogenase JN178_RS12540 PF03466 LysR substrate binding domain JN178_RS12540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS12560 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JN178_RS12570 PF00156 Phosphoribosyl transferase domain JN178_RS12575 PF02674 Colicin V production protein JN178_RS12580 PF05036 Sporulation related domain JN178_RS12585 PF02875 Mur ligase family, glutamate ligase domain JN178_RS12585 PF08245 Mur ligase middle domain JN178_RS12590 PF17848 Acetyl-coA carboxylase zinc finger domain JN178_RS12590 PF01039 Carboxyl transferase domain JN178_RS12600 PF01416 tRNA pseudouridine synthase JN178_RS12610 PF02774 Semialdehyde dehydrogenase, dimerisation domain JN178_RS12610 PF01118 Semialdehyde dehydrogenase, NAD binding domain JN178_RS12615 PF11890 Domain of unknown function (DUF3410) JN178_RS12615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JN178_RS12615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JN178_RS12620 PF00596 Class II Aldolase and Adducin N-terminal domain JN178_RS12630 PF00109 Beta-ketoacyl synthase, N-terminal domain JN178_RS12630 PF02801 Beta-ketoacyl synthase, C-terminal domain JN178_RS12640 PF01266 FAD dependent oxidoreductase JN178_RS12640 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JN178_RS12660 PF00005 ABC transporter JN178_RS12665 PF05193 Peptidase M16 inactive domain JN178_RS12665 PF00675 Insulinase (Peptidase family M16) JN178_RS12675 PF02667 Short chain fatty acid transporter JN178_RS12680 PF08891 YfcL protein JN178_RS12690 PF04315 Elongation factor P hydroxylase JN178_RS12730 PF00884 Sulfatase JN178_RS12735 PF00106 short chain dehydrogenase JN178_RS12745 PF12708 Pectate lyase superfamily protein JN178_RS12765 PF00171 Aldehyde dehydrogenase family JN178_RS12770 PF13378 Enolase C-terminal domain-like JN178_RS12770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JN178_RS12775 PF07944 Beta-L-arabinofuranosidase, GH127 JN178_RS12780 PF00884 Sulfatase JN178_RS12785 PF16347 Domain of unknown function (DUF4976) JN178_RS12785 PF00884 Sulfatase JN178_RS12790 PF00392 Bacterial regulatory proteins, gntR family JN178_RS12790 PF00155 Aminotransferase class I and II JN178_RS12795 PF01081 KDPG and KHG aldolase JN178_RS12805 PF00083 Sugar (and other) transporter JN178_RS12810 PF00356 Bacterial regulatory proteins, lacI family JN178_RS12815 PF00593 TonB dependent receptor JN178_RS12815 PF07715 TonB-dependent Receptor Plug Domain JN178_RS12830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JN178_RS12830 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS12835 PF00378 Enoyl-CoA hydratase/isomerase JN178_RS12840 PF00440 Bacterial regulatory proteins, tetR family JN178_RS12840 PF02909 Tetracyclin repressor-like, C-terminal domain JN178_RS12845 PF00732 GMC oxidoreductase JN178_RS12845 PF05199 GMC oxidoreductase JN178_RS12855 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain JN178_RS12855 PF06974 Protein of unknown function (DUF1298) JN178_RS12865 PF04286 Protein of unknown function (DUF445) JN178_RS12890 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JN178_RS12890 PF00326 Prolyl oligopeptidase family JN178_RS12895 PF07840 FadR C-terminal domain JN178_RS12895 PF00392 Bacterial regulatory proteins, gntR family JN178_RS12900 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JN178_RS12905 PF02600 Disulfide bond formation protein DsbB JN178_RS12910 PF13302 Acetyltransferase (GNAT) domain JN178_RS12915 PF03692 Putative zinc- or iron-chelating domain JN178_RS12920 PF01557 Fumarylacetoacetate (FAA) hydrolase family JN178_RS12930 PF05166 YcgL domain JN178_RS12935 PF01612 3'-5' exonuclease JN178_RS12935 PF00570 HRDC domain JN178_RS12940 PF00501 AMP-binding enzyme JN178_RS12940 PF13193 AMP-binding enzyme C-terminal domain JN178_RS12945 PF12697 Alpha/beta hydrolase family JN178_RS12960 PF00814 Glycoprotease family JN178_RS12965 PF13307 Helicase C-terminal domain JN178_RS12965 PF06733 DEAD_2 JN178_RS12980 PF01569 PAP2 superfamily JN178_RS12990 PF00128 Alpha amylase, catalytic domain JN178_RS13015 PF13614 AAA domain JN178_RS13025 PF01634 ATP phosphoribosyltransferase JN178_RS13025 PF08029 HisG, C-terminal domain JN178_RS13030 PF00815 Histidinol dehydrogenase JN178_RS13035 PF00155 Aminotransferase class I and II JN178_RS13040 PF00475 Imidazoleglycerol-phosphate dehydratase JN178_RS13045 PF00117 Glutamine amidotransferase class-I JN178_RS13050 PF00977 Histidine biosynthesis protein JN178_RS13055 PF00977 Histidine biosynthesis protein JN178_RS13060 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JN178_RS13060 PF01502 Phosphoribosyl-AMP cyclohydrolase JN178_RS13065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS13065 PF03466 LysR substrate binding domain JN178_RS13070 PF00675 Insulinase (Peptidase family M16) JN178_RS13070 PF05193 Peptidase M16 inactive domain JN178_RS13075 PF10502 Signal peptidase, peptidase S26 JN178_RS13080 PF00593 TonB dependent receptor JN178_RS13080 PF07715 TonB-dependent Receptor Plug Domain JN178_RS13090 PF05191 Adenylate kinase, active site lid JN178_RS13095 PF00183 Hsp90 protein JN178_RS13095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS13100 PF13662 Toprim domain JN178_RS13100 PF02132 RecR protein JN178_RS13115 PF02575 YbaB/EbfC DNA-binding family JN178_RS13120 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JN178_RS13120 PF12169 DNA polymerase III subunits gamma and tau domain III JN178_RS13120 PF12170 DNA polymerase III tau subunit V interacting with alpha JN178_RS13125 PF00156 Phosphoribosyl transferase domain JN178_RS13135 PF05114 Protein of unknown function (DUF692) JN178_RS13175 PF01066 CDP-alcohol phosphatidyltransferase JN178_RS13195 PF09330 D-lactate dehydrogenase, membrane binding JN178_RS13195 PF01565 FAD binding domain JN178_RS13200 PF07724 AAA domain (Cdc48 subfamily) JN178_RS13200 PF17871 AAA lid domain JN178_RS13200 PF02861 Clp amino terminal domain, pathogenicity island component JN178_RS13200 PF10431 C-terminal, D2-small domain, of ClpB protein JN178_RS13200 PF00004 ATPase family associated with various cellular activities (AAA) JN178_RS13205 PF02578 Multi-copper polyphenol oxidoreductase laccase JN178_RS13210 PF01479 S4 domain JN178_RS13210 PF00849 RNA pseudouridylate synthase JN178_RS13215 PF13525 Outer membrane lipoprotein JN178_RS13225 PF04545 Sigma-70, region 4 JN178_RS13225 PF04542 Sigma-70 region 2 JN178_RS13240 PF00106 short chain dehydrogenase JN178_RS13245 PF01593 Flavin containing amine oxidoreductase JN178_RS13260 PF13677 Membrane MotB of proton-channel complex MotA/MotB JN178_RS13260 PF00691 OmpA family JN178_RS13265 PF01618 MotA/TolQ/ExbB proton channel family JN178_RS13270 PF02609 Exonuclease VII small subunit JN178_RS13275 PF00348 Polyprenyl synthetase JN178_RS13280 PF02780 Transketolase, C-terminal domain JN178_RS13280 PF02779 Transketolase, pyrimidine binding domain JN178_RS13280 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JN178_RS13285 PF04608 Phosphatidylglycerophosphatase A JN178_RS13290 PF02769 AIR synthase related protein, C-terminal domain JN178_RS13290 PF00586 AIR synthase related protein, N-terminal domain JN178_RS13295 PF01029 NusB family JN178_RS13300 PF00885 6,7-dimethyl-8-ribityllumazine synthase JN178_RS13305 PF00925 GTP cyclohydrolase II JN178_RS13305 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JN178_RS13310 PF00677 Lumazine binding domain JN178_RS13315 PF01872 RibD C-terminal domain JN178_RS13315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JN178_RS13320 PF03477 ATP cone domain JN178_RS13325 PF00464 Serine hydroxymethyltransferase JN178_RS13330 PF00132 Bacterial transferase hexapeptide (six repeats) JN178_RS13330 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JN178_RS13335 PF00005 ABC transporter JN178_RS13335 PF12848 ABC transporter JN178_RS13345 PF18073 Rubredoxin metal binding domain JN178_RS13355 PF18429 Domain of unknown function (DUF5609) JN178_RS13365 PF01026 TatD related DNase JN178_RS13370 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JN178_RS13370 PF01243 Pyridoxamine 5'-phosphate oxidase JN178_RS13375 PF07650 KH domain JN178_RS13375 PF01926 50S ribosome-binding GTPase JN178_RS13380 PF14622 Ribonuclease-III-like JN178_RS13380 PF00035 Double-stranded RNA binding motif JN178_RS13385 PF10502 Signal peptidase, peptidase S26 JN178_RS13390 PF06421 GTP-binding protein LepA C-terminus JN178_RS13390 PF00009 Elongation factor Tu GTP binding domain JN178_RS13390 PF03144 Elongation factor Tu domain 2 JN178_RS13390 PF00679 Elongation factor G C-terminus JN178_RS13400 PF03888 MucB/RseB N-terminal domain JN178_RS13400 PF17188 MucB/RseB C-terminal domain JN178_RS13410 PF04542 Sigma-70 region 2 JN178_RS13410 PF08281 Sigma-70, region 4 JN178_RS13415 PF02910 Fumarate reductase flavoprotein C-term JN178_RS13415 PF00890 FAD binding domain JN178_RS13430 PF03937 Flavinator of succinate dehydrogenase JN178_RS13440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN178_RS13445 PF00543 Nitrogen regulatory protein P-II JN178_RS13450 PF02540 NAD synthase JN178_RS13465 PF07963 Prokaryotic N-terminal methylation motif JN178_RS13465 PF00114 Pilin (bacterial filament) JN178_RS13485 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor JN178_RS13485 PF07963 Prokaryotic N-terminal methylation motif JN178_RS13510 PF02401 LytB protein JN178_RS13515 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN178_RS13520 PF01252 Signal peptidase (SPase) II JN178_RS13525 PF08264 Anticodon-binding domain of tRNA JN178_RS13525 PF06827 Zinc finger found in FPG and IleRS JN178_RS13525 PF00133 tRNA synthetases class I (I, L, M and V) JN178_RS13530 PF01687 Riboflavin kinase JN178_RS13530 PF06574 FAD synthetase JN178_RS13540 PF01649 Ribosomal protein S20 JN178_RS13545 PF00106 short chain dehydrogenase JN178_RS13555 PF00106 short chain dehydrogenase JN178_RS13560 PF01758 Sodium Bile acid symporter family JN178_RS13565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS13565 PF03466 LysR substrate binding domain JN178_RS13585 PF07687 Peptidase dimerisation domain JN178_RS13585 PF01546 Peptidase family M20/M25/M40 JN178_RS13600 PF00216 Bacterial DNA-binding protein JN178_RS13605 PF02190 ATP-dependent protease La (LON) substrate-binding domain JN178_RS13605 PF05362 Lon protease (S16) C-terminal proteolytic domain JN178_RS13605 PF00004 ATPase family associated with various cellular activities (AAA) JN178_RS13615 PF10431 C-terminal, D2-small domain, of ClpB protein JN178_RS13615 PF06689 ClpX C4-type zinc finger JN178_RS13615 PF07724 AAA domain (Cdc48 subfamily) JN178_RS13620 PF00574 Clp protease JN178_RS13625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN178_RS13625 PF05698 Bacterial trigger factor protein (TF) C-terminus JN178_RS13625 PF05697 Bacterial trigger factor protein (TF) JN178_RS13655 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JN178_RS13655 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JN178_RS13665 PF01980 tRNA-methyltransferase O JN178_RS13665 PF18389 TrmO C-terminal domain JN178_RS13670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JN178_RS13670 PF03129 Anticodon binding domain JN178_RS13675 PF12706 Beta-lactamase superfamily domain JN178_RS13675 PF00753 Metallo-beta-lactamase superfamily JN178_RS13680 PF02253 Phospholipase A1 JN178_RS13685 PF00850 Histone deacetylase domain JN178_RS13690 PF00672 HAMP domain JN178_RS13690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS13690 PF02743 Cache domain JN178_RS13695 PF01794 Ferric reductase like transmembrane component JN178_RS13700 PF00174 Oxidoreductase molybdopterin binding domain JN178_RS13715 PF03150 Di-haem cytochrome c peroxidase JN178_RS13715 PF00034 Cytochrome c JN178_RS13720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS13720 PF02743 Cache domain JN178_RS13720 PF00672 HAMP domain JN178_RS13730 PF00117 Glutamine amidotransferase class-I JN178_RS13730 PF00958 GMP synthase C terminal domain JN178_RS13730 PF02540 NAD synthase JN178_RS13735 PF00478 IMP dehydrogenase / GMP reductase domain JN178_RS13735 PF00571 CBS domain JN178_RS13740 PF02601 Exonuclease VII, large subunit JN178_RS13740 PF13742 OB-fold nucleic acid binding domain JN178_RS13760 PF01926 50S ribosome-binding GTPase JN178_RS13760 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JN178_RS13765 PF13360 PQQ-like domain JN178_RS13770 PF09976 Tetratricopeptide repeat-like domain JN178_RS13775 PF03129 Anticodon binding domain JN178_RS13775 PF13393 Histidyl-tRNA synthetase JN178_RS13780 PF04551 GcpE protein JN178_RS13785 PF13464 Domain of unknown function (DUF4115) JN178_RS13795 PF04055 Radical SAM superfamily JN178_RS13800 PF00334 Nucleoside diphosphate kinase JN178_RS13805 PF02657 Fe-S metabolism associated domain JN178_RS13810 PF01883 Iron-sulfur cluster assembly protein JN178_RS13815 PF01521 Iron-sulphur cluster biosynthesis JN178_RS13820 PF00266 Aminotransferase class-V JN178_RS13825 PF01458 Uncharacterized protein family (UPF0051) JN178_RS13830 PF00005 ABC transporter JN178_RS13835 PF01458 Uncharacterized protein family (UPF0051) JN178_RS13840 PF00266 Aminotransferase class-V JN178_RS13845 PF02082 Transcriptional regulator JN178_RS13850 PF06426 Serine acetyltransferase, N-terminal JN178_RS13850 PF00132 Bacterial transferase hexapeptide (six repeats) JN178_RS13855 PF00588 SpoU rRNA Methylase family JN178_RS13860 PF00459 Inositol monophosphatase family JN178_RS13875 PF02355 Protein export membrane protein JN178_RS13875 PF07549 SecD/SecF GG Motif JN178_RS13880 PF02355 Protein export membrane protein JN178_RS13880 PF13721 SecD export protein N-terminal TM region JN178_RS13880 PF07549 SecD/SecF GG Motif JN178_RS13885 PF02699 Preprotein translocase subunit JN178_RS13890 PF01702 Queuine tRNA-ribosyltransferase JN178_RS13895 PF02547 Queuosine biosynthesis protein JN178_RS13910 PF04012 PspA/IM30 family JN178_RS13915 PF07885 Ion channel JN178_RS13930 PF06693 Protein of unknown function (DUF1190) JN178_RS13935 PF03738 Glutathionylspermidine synthase preATP-grasp JN178_RS13950 PF00005 ABC transporter JN178_RS13965 PF04960 Glutaminase JN178_RS13970 PF00245 Alkaline phosphatase JN178_RS13975 PF00072 Response regulator receiver domain JN178_RS13980 PF00463 Isocitrate lyase family JN178_RS13985 PF03466 LysR substrate binding domain JN178_RS13985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS13990 PF01274 Malate synthase JN178_RS14005 PF01370 NAD dependent epimerase/dehydratase family JN178_RS14060 PF13439 Glycosyltransferase Family 4 JN178_RS14060 PF00534 Glycosyl transferases group 1 JN178_RS14105 PF00534 Glycosyl transferases group 1 JN178_RS14105 PF13439 Glycosyltransferase Family 4 JN178_RS14115 PF01757 Acyltransferase family JN178_RS14120 PF13537 Glutamine amidotransferase domain JN178_RS14120 PF00733 Asparagine synthase JN178_RS14150 PF00733 Asparagine synthase JN178_RS14150 PF13537 Glutamine amidotransferase domain JN178_RS14165 PF01522 Polysaccharide deacetylase JN178_RS14170 PF02397 Bacterial sugar transferase JN178_RS14185 PF13614 AAA domain JN178_RS14195 PF01471 Putative peptidoglycan binding domain JN178_RS14195 PF13401 AAA domain JN178_RS14200 PF00294 pfkB family carbohydrate kinase JN178_RS14200 PF01467 Cytidylyltransferase-like JN178_RS14205 PF01541 GIY-YIG catalytic domain JN178_RS14215 PF03710 Glutamate-ammonia ligase adenylyltransferase JN178_RS14215 PF08335 GlnD PII-uridylyltransferase JN178_RS14225 PF03279 Bacterial lipid A biosynthesis acyltransferase JN178_RS14240 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS14240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS14240 PF09317 Domain of unknown function (DUF1974) JN178_RS14240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JN178_RS14250 PF00563 EAL domain JN178_RS14250 PF03707 Bacterial signalling protein N terminal repeat JN178_RS14250 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS14255 PF00265 Thymidine kinase JN178_RS14265 PF00356 Bacterial regulatory proteins, lacI family JN178_RS14290 PF10566 Glycoside hydrolase 97 JN178_RS14290 PF14508 Glycosyl-hydrolase 97 N-terminal JN178_RS14290 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation JN178_RS14295 PF01926 50S ribosome-binding GTPase JN178_RS14300 PF08032 RNA 2'-O ribose methyltransferase substrate binding JN178_RS14300 PF00588 SpoU rRNA Methylase family JN178_RS14315 PF01276 Orn/Lys/Arg decarboxylase, major domain JN178_RS14315 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain JN178_RS14315 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JN178_RS14330 PF00171 Aldehyde dehydrogenase family JN178_RS14335 PF00732 GMC oxidoreductase JN178_RS14335 PF05199 GMC oxidoreductase JN178_RS14355 PF05971 RNA methyltransferase JN178_RS14360 PF00376 MerR family regulatory protein JN178_RS14360 PF09278 MerR, DNA binding JN178_RS14395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JN178_RS14395 PF02770 Acyl-CoA dehydrogenase, middle domain JN178_RS14395 PF18158 Adaptive response protein AidB N-terminal domain JN178_RS14415 PF01295 Adenylate cyclase, class-I JN178_RS14415 PF12633 Adenylate cyclase NT domain JN178_RS14420 PF03965 Penicillinase repressor JN178_RS14430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JN178_RS14460 PF07715 TonB-dependent Receptor Plug Domain JN178_RS14460 PF00593 TonB dependent receptor JN178_RS14465 PF03442 Carbohydrate binding domain X2 JN178_RS14465 PF00942 Cellulose binding domain JN178_RS14475 PF03631 Virulence factor BrkB JN178_RS14480 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS14480 PF00563 EAL domain JN178_RS14480 PF03707 Bacterial signalling protein N terminal repeat JN178_RS14485 PF00144 Beta-lactamase JN178_RS14495 PF00072 Response regulator receiver domain JN178_RS14495 PF04397 LytTr DNA-binding domain JN178_RS14500 PF00756 Putative esterase JN178_RS14510 PF12833 Helix-turn-helix domain JN178_RS14510 PF02311 AraC-like ligand binding domain JN178_RS14540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN178_RS14540 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JN178_RS14545 PF07152 YaeQ protein JN178_RS14560 PF00144 Beta-lactamase JN178_RS14590 PF00672 HAMP domain JN178_RS14590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS14590 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS14590 PF01627 Hpt domain JN178_RS14590 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JN178_RS14590 PF00072 Response regulator receiver domain JN178_RS14640 PF00158 Sigma-54 interaction domain JN178_RS14640 PF06956 Regulator of RNA terminal phosphate cyclase JN178_RS14660 PF01139 tRNA-splicing ligase RtcB JN178_RS14665 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain JN178_RS14665 PF01137 RNA 3'-terminal phosphate cyclase JN178_RS14670 PF00472 RF-1 domain JN178_RS14685 PF13087 AAA domain JN178_RS14685 PF13091 PLD-like domain JN178_RS14700 PF12008 Type I restriction and modification enzyme - subunit R C terminal JN178_RS14700 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JN178_RS14700 PF18766 SWI2/SNF2 ATPase JN178_RS14705 PF02384 N-6 DNA Methylase JN178_RS14710 PF01420 Type I restriction modification DNA specificity domain JN178_RS14730 PF02347 Glycine cleavage system P-protein JN178_RS14735 PF01597 Glycine cleavage H-protein JN178_RS14740 PF01571 Aminomethyltransferase folate-binding domain JN178_RS14740 PF08669 Glycine cleavage T-protein C-terminal barrel domain JN178_RS14745 PF03575 Peptidase family S51 JN178_RS14750 PF01048 Phosphorylase superfamily JN178_RS14755 PF06594 Haemolysin-type calcium binding protein related domain JN178_RS14755 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) JN178_RS14760 PF07690 Major Facilitator Superfamily JN178_RS14765 PF01979 Amidohydrolase family JN178_RS14770 PF01380 SIS domain JN178_RS14775 PF01869 BadF/BadG/BcrA/BcrD ATPase family JN178_RS14780 PF02838 Glycosyl hydrolase family 20, domain 2 JN178_RS14780 PF00728 Glycosyl hydrolase family 20, catalytic domain JN178_RS14780 PF03173 Putative carbohydrate binding domain JN178_RS14790 PF00356 Bacterial regulatory proteins, lacI family JN178_RS14795 PF04820 Tryptophan halogenase JN178_RS14800 PF03466 LysR substrate binding domain JN178_RS14800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS14810 PF01321 Creatinase/Prolidase N-terminal domain JN178_RS14810 PF00557 Metallopeptidase family M24 JN178_RS14825 PF01494 FAD binding domain JN178_RS14830 PF01494 FAD binding domain JN178_RS14835 PF05195 Aminopeptidase P, N-terminal domain JN178_RS14835 PF00557 Metallopeptidase family M24 JN178_RS14840 PF03695 Uncharacterised protein family (UPF0149) JN178_RS14850 PF00294 pfkB family carbohydrate kinase JN178_RS14855 PF01156 Inosine-uridine preferring nucleoside hydrolase JN178_RS14860 PF00072 Response regulator receiver domain JN178_RS14860 PF00989 PAS fold JN178_RS14860 PF01627 Hpt domain JN178_RS14860 PF18415 Histidine kinase receptor ArcB trans-membrane domain JN178_RS14860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS14860 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS14865 PF01812 5-formyltetrahydrofolate cyclo-ligase family JN178_RS14875 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JN178_RS14880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JN178_RS14880 PF01842 ACT domain JN178_RS14880 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JN178_RS14900 PF06945 Protein of unknown function (DUF1289) JN178_RS14910 PF00873 AcrB/AcrD/AcrF family JN178_RS14915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN178_RS14930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JN178_RS14930 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS14935 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JN178_RS14935 PF00364 Biotin-requiring enzyme JN178_RS14935 PF02817 e3 binding domain JN178_RS14940 PF00456 Transketolase, thiamine diphosphate binding domain JN178_RS14940 PF17831 Pyruvate dehydrogenase E1 component middle domain JN178_RS14945 PF00392 Bacterial regulatory proteins, gntR family JN178_RS14945 PF07729 FCD domain JN178_RS14955 PF01510 N-acetylmuramoyl-L-alanine amidase JN178_RS14965 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JN178_RS14965 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JN178_RS14970 PF07963 Prokaryotic N-terminal methylation motif JN178_RS14975 PF00482 Type II secretion system (T2SS), protein F JN178_RS14980 PF06750 Bacterial Peptidase A24 N-terminal domain JN178_RS14980 PF01478 Type IV leader peptidase family JN178_RS14985 PF01121 Dephospho-CoA kinase JN178_RS14990 PF07072 Cell division protein JN178_RS14995 PF03884 DNA gyrase inhibitor YacG JN178_RS15000 PF09278 MerR, DNA binding JN178_RS15000 PF00376 MerR family regulatory protein JN178_RS15005 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JN178_RS15005 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS15010 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JN178_RS15015 PF00293 NUDIX domain JN178_RS15020 PF07516 SecA Wing and Scaffold domain JN178_RS15020 PF01043 SecA preprotein cross-linking domain JN178_RS15020 PF07517 SecA DEAD-like domain JN178_RS15020 PF02810 SEC-C motif JN178_RS15025 PF08525 Opacity-associated protein A N-terminal motif JN178_RS15025 PF01551 Peptidase family M23 JN178_RS15025 PF01476 LysM domain JN178_RS15030 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JN178_RS15035 PF00091 Tubulin/FtsZ family, GTPase domain JN178_RS15035 PF12327 FtsZ family, C-terminal domain JN178_RS15040 PF02491 SHS2 domain inserted in FTSA JN178_RS15045 PF08478 POTRA domain, FtsQ-type JN178_RS15045 PF03799 Cell division protein FtsQ JN178_RS15050 PF01820 D-ala D-ala ligase N-terminus JN178_RS15050 PF07478 D-ala D-ala ligase C-terminus JN178_RS15055 PF02875 Mur ligase family, glutamate ligase domain JN178_RS15055 PF08245 Mur ligase middle domain JN178_RS15055 PF01225 Mur ligase family, catalytic domain JN178_RS15060 PF04101 Glycosyltransferase family 28 C-terminal domain JN178_RS15060 PF03033 Glycosyltransferase family 28 N-terminal domain JN178_RS15065 PF01098 Cell cycle protein JN178_RS15070 PF02875 Mur ligase family, glutamate ligase domain JN178_RS15070 PF08245 Mur ligase middle domain JN178_RS15075 PF00953 Glycosyl transferase family 4 JN178_RS15075 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JN178_RS15080 PF01225 Mur ligase family, catalytic domain JN178_RS15080 PF08245 Mur ligase middle domain JN178_RS15080 PF02875 Mur ligase family, glutamate ligase domain JN178_RS15085 PF08245 Mur ligase middle domain JN178_RS15085 PF01225 Mur ligase family, catalytic domain JN178_RS15085 PF02875 Mur ligase family, glutamate ligase domain JN178_RS15090 PF00905 Penicillin binding protein transpeptidase domain JN178_RS15090 PF03717 Penicillin-binding Protein dimerisation domain JN178_RS15095 PF04999 Cell division protein FtsL JN178_RS15100 PF01795 MraW methylase family JN178_RS15105 PF02381 MraZ protein, putative antitoxin-like JN178_RS15125 PF00873 AcrB/AcrD/AcrF family JN178_RS15130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JN178_RS15150 PF00462 Glutaredoxin JN178_RS15150 PF08534 Redoxin JN178_RS15155 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JN178_RS15165 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS15175 PF02954 Bacterial regulatory protein, Fis family JN178_RS15175 PF00072 Response regulator receiver domain JN178_RS15175 PF00158 Sigma-54 interaction domain JN178_RS15180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS15180 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS15180 PF09456 RcsC Alpha-Beta-Loop (ABL) JN178_RS15180 PF00072 Response regulator receiver domain JN178_RS15185 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JN178_RS15185 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JN178_RS15205 PF00924 Mechanosensitive ion channel JN178_RS15205 PF05552 Conserved TM helix JN178_RS15210 PF04452 RNA methyltransferase JN178_RS15215 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JN178_RS15215 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JN178_RS15220 PF02622 Uncharacterized ACR, COG1678 JN178_RS15225 PF03652 Holliday junction resolvase JN178_RS15235 PF00437 Type II/IV secretion system protein JN178_RS15240 PF00437 Type II/IV secretion system protein JN178_RS15245 PF01168 Alanine racemase, N-terminal domain JN178_RS15250 PF03807 NADP oxidoreductase coenzyme F420-dependent JN178_RS15250 PF14748 Pyrroline-5-carboxylate reductase dimerisation JN178_RS15255 PF02325 YGGT family JN178_RS15285 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS15285 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JN178_RS15305 PF00043 Glutathione S-transferase, C-terminal domain JN178_RS15305 PF02798 Glutathione S-transferase, N-terminal domain JN178_RS15315 PF03591 AzlC protein JN178_RS15330 PF08279 HTH domain JN178_RS15330 PF13280 WYL domain JN178_RS15335 PF03883 Peroxide stress protein YaaA JN178_RS15340 PF00923 Transaldolase/Fructose-6-phosphate aldolase JN178_RS15345 PF00342 Phosphoglucose isomerase JN178_RS15355 PF03167 Uracil DNA glycosylase superfamily JN178_RS15360 PF14821 Threonine synthase N terminus JN178_RS15360 PF00291 Pyridoxal-phosphate dependent enzyme JN178_RS15365 PF00288 GHMP kinases N terminal domain JN178_RS15365 PF08544 GHMP kinases C terminal JN178_RS15375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS15375 PF03466 LysR substrate binding domain JN178_RS15380 PF00107 Zinc-binding dehydrogenase JN178_RS15380 PF08240 Alcohol dehydrogenase GroES-like domain JN178_RS15385 PF00072 Response regulator receiver domain JN178_RS15385 PF00196 Bacterial regulatory proteins, luxR family JN178_RS15390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS15390 PF07730 Histidine kinase JN178_RS15405 PF02743 Cache domain JN178_RS15405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS15405 PF00672 HAMP domain JN178_RS15410 PF01022 Bacterial regulatory protein, arsR family JN178_RS15420 PF03358 NADPH-dependent FMN reductase JN178_RS15425 PF01758 Sodium Bile acid symporter family JN178_RS15430 PF00072 Response regulator receiver domain JN178_RS15430 PF00196 Bacterial regulatory proteins, luxR family JN178_RS15435 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) JN178_RS15440 PF00072 Response regulator receiver domain JN178_RS15440 PF00486 Transcriptional regulatory protein, C terminal JN178_RS15445 PF00672 HAMP domain JN178_RS15445 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS15445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS15470 PF16653 Saccharopine dehydrogenase C-terminal domain JN178_RS15470 PF03435 Saccharopine dehydrogenase NADP binding domain JN178_RS15475 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JN178_RS15480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JN178_RS15485 PF04348 LppC putative lipoprotein JN178_RS15490 PF02021 Uncharacterised protein family UPF0102 JN178_RS15495 PF13580 SIS domain JN178_RS15500 PF04972 BON domain JN178_RS15505 PF07690 Major Facilitator Superfamily JN178_RS15515 PF00893 Small Multidrug Resistance protein JN178_RS15520 PF07730 Histidine kinase JN178_RS15525 PF00072 Response regulator receiver domain JN178_RS15525 PF00196 Bacterial regulatory proteins, luxR family JN178_RS15540 PF07715 TonB-dependent Receptor Plug Domain JN178_RS15540 PF00593 TonB dependent receptor JN178_RS15545 PF00392 Bacterial regulatory proteins, gntR family JN178_RS15545 PF07729 FCD domain JN178_RS15555 PF00285 Citrate synthase, C-terminal domain JN178_RS15560 PF00694 Aconitase C-terminal domain JN178_RS15560 PF00330 Aconitase family (aconitate hydratase) JN178_RS15565 PF04303 PrpF protein JN178_RS15570 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS15585 PF18415 Histidine kinase receptor ArcB trans-membrane domain JN178_RS15585 PF00072 Response regulator receiver domain JN178_RS15585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS15585 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS15585 PF00989 PAS fold JN178_RS15585 PF01627 Hpt domain JN178_RS15590 PF01510 N-acetylmuramoyl-L-alanine amidase JN178_RS15595 PF04898 Glutamate synthase central domain JN178_RS15595 PF00310 Glutamine amidotransferases class-II JN178_RS15595 PF01493 GXGXG motif JN178_RS15595 PF01645 Conserved region in glutamate synthase JN178_RS15600 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS15600 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JN178_RS15605 PF00266 Aminotransferase class-V JN178_RS15625 PF01048 Phosphorylase superfamily JN178_RS15630 PF17113 Regulatory signalling modulator protein AmpE JN178_RS15630 PF03186 CobD/Cbib protein JN178_RS15635 PF01497 Periplasmic binding protein JN178_RS15640 PF17773 UPF0176 acylphosphatase like domain JN178_RS15640 PF00581 Rhodanese-like domain JN178_RS15655 PF01266 FAD dependent oxidoreductase JN178_RS15660 PF07237 Protein of unknown function (DUF1428) JN178_RS15665 PF01479 S4 domain JN178_RS15665 PF00579 tRNA synthetases class I (W and Y) JN178_RS15670 PF10145 Phage-related minor tail protein JN178_RS15670 PF01464 Transglycosylase SLT domain JN178_RS15670 PF01551 Peptidase family M23 JN178_RS15675 PF03702 Anhydro-N-acetylmuramic acid kinase JN178_RS15680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JN178_RS15690 PF01053 Cys/Met metabolism PLP-dependent enzyme JN178_RS15695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JN178_RS15695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JN178_RS15700 PF13417 Glutathione S-transferase, N-terminal domain JN178_RS15700 PF00043 Glutathione S-transferase, C-terminal domain JN178_RS15705 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase JN178_RS15710 PF00111 2Fe-2S iron-sulfur cluster binding domain JN178_RS15710 PF01799 [2Fe-2S] binding domain JN178_RS15715 PF01521 Iron-sulphur cluster biosynthesis JN178_RS15720 PF03976 Polyphosphate kinase 2 (PPK2) JN178_RS15725 PF00072 Response regulator receiver domain JN178_RS15725 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS15735 PF00535 Glycosyl transferase family 2 JN178_RS15740 PF02397 Bacterial sugar transferase JN178_RS15750 PF00158 Sigma-54 interaction domain JN178_RS15750 PF02954 Bacterial regulatory protein, Fis family JN178_RS15750 PF00072 Response regulator receiver domain JN178_RS15755 PF00072 Response regulator receiver domain JN178_RS15755 PF13188 PAS domain JN178_RS15755 PF08448 PAS fold JN178_RS15755 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS15755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS15760 PF03776 Septum formation topological specificity factor MinE JN178_RS15765 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JN178_RS15770 PF03775 Septum formation inhibitor MinC, C-terminal domain JN178_RS15770 PF05209 Septum formation inhibitor MinC, N-terminal domain JN178_RS15775 PF10415 Fumarase C C-terminus JN178_RS15775 PF00206 Lyase JN178_RS15790 PF03653 Uncharacterised protein family (UPF0093) JN178_RS15805 PF01566 Natural resistance-associated macrophage protein JN178_RS15810 PF00155 Aminotransferase class I and II JN178_RS15815 PF00072 Response regulator receiver domain JN178_RS15815 PF13188 PAS domain JN178_RS15815 PF08448 PAS fold JN178_RS15815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS15815 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS15820 PF00679 Elongation factor G C-terminus JN178_RS15820 PF00009 Elongation factor Tu GTP binding domain JN178_RS15820 PF03144 Elongation factor Tu domain 2 JN178_RS15825 PF00120 Glutamine synthetase, catalytic domain JN178_RS15825 PF03951 Glutamine synthetase, beta-Grasp domain JN178_RS15835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS15835 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS15835 PF00989 PAS fold JN178_RS15840 PF00072 Response regulator receiver domain JN178_RS15840 PF00158 Sigma-54 interaction domain JN178_RS15840 PF02954 Bacterial regulatory protein, Fis family JN178_RS15850 PF00072 Response regulator receiver domain JN178_RS15855 PF01553 Acyltransferase JN178_RS15860 PF06877 Regulator of ribonuclease activity B JN178_RS15875 PF01627 Hpt domain JN178_RS15875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS15875 PF00072 Response regulator receiver domain JN178_RS15875 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JN178_RS15875 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS15875 PF00672 HAMP domain JN178_RS15885 PF08264 Anticodon-binding domain of tRNA JN178_RS15885 PF00133 tRNA synthetases class I (I, L, M and V) JN178_RS15885 PF10458 Valyl tRNA synthetase tRNA binding arm JN178_RS15890 PF04364 DNA polymerase III chi subunit, HolC JN178_RS15895 PF02789 Cytosol aminopeptidase family, N-terminal domain JN178_RS15895 PF00883 Cytosol aminopeptidase family, catalytic domain JN178_RS15900 PF03739 Lipopolysaccharide export system permease LptF/LptG JN178_RS15905 PF03739 Lipopolysaccharide export system permease LptF/LptG JN178_RS15915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JN178_RS15915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JN178_RS15925 PF04545 Sigma-70, region 4 JN178_RS15925 PF04542 Sigma-70 region 2 JN178_RS16005 PF17866 AAA lid domain JN178_RS16005 PF00004 ATPase family associated with various cellular activities (AAA) JN178_RS16030 PF00072 Response regulator receiver domain JN178_RS16030 PF01966 HD domain JN178_RS16040 PF01751 Toprim domain JN178_RS16040 PF01396 Topoisomerase DNA binding C4 zinc finger JN178_RS16040 PF01131 DNA topoisomerase JN178_RS16050 PF01693 Caulimovirus viroplasmin JN178_RS16065 PF01434 Peptidase family M41 JN178_RS16065 PF17862 AAA+ lid domain JN178_RS16065 PF00004 ATPase family associated with various cellular activities (AAA) JN178_RS16070 PF00589 Phage integrase family JN178_RS16070 PF02899 Phage integrase, N-terminal SAM-like domain JN178_RS16090 PF00580 UvrD/REP helicase N-terminal domain JN178_RS16090 PF13361 UvrD-like helicase C-terminal domain JN178_RS16100 PF00722 Glycosyl hydrolases family 16 JN178_RS16125 PF01131 DNA topoisomerase JN178_RS16125 PF01396 Topoisomerase DNA binding C4 zinc finger JN178_RS16125 PF01751 Toprim domain JN178_RS16180 PF03707 Bacterial signalling protein N terminal repeat JN178_RS16180 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS16180 PF00563 EAL domain JN178_RS16195 PF13407 Periplasmic binding protein domain JN178_RS16205 PF00486 Transcriptional regulatory protein, C terminal JN178_RS16205 PF00072 Response regulator receiver domain JN178_RS16215 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JN178_RS16220 PF00580 UvrD/REP helicase N-terminal domain JN178_RS16220 PF13361 UvrD-like helicase C-terminal domain JN178_RS16225 PF00378 Enoyl-CoA hydratase/isomerase JN178_RS16250 PF00535 Glycosyl transferase family 2 JN178_RS16255 PF13439 Glycosyltransferase Family 4 JN178_RS16255 PF00534 Glycosyl transferases group 1 JN178_RS16270 PF05736 OprF membrane domain JN178_RS16270 PF00691 OmpA family JN178_RS16290 PF01321 Creatinase/Prolidase N-terminal domain JN178_RS16290 PF00557 Metallopeptidase family M24 JN178_RS16295 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain JN178_RS16295 PF05221 S-adenosyl-L-homocysteine hydrolase JN178_RS16315 PF00171 Aldehyde dehydrogenase family JN178_RS16320 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JN178_RS16320 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JN178_RS16325 PF09330 D-lactate dehydrogenase, membrane binding JN178_RS16325 PF01565 FAD binding domain JN178_RS16330 PF00196 Bacterial regulatory proteins, luxR family JN178_RS16335 PF03783 Curli production assembly/transport component CsgG JN178_RS16360 PF00082 Subtilase family JN178_RS16365 PF00196 Bacterial regulatory proteins, luxR family JN178_RS16365 PF00072 Response regulator receiver domain JN178_RS16370 PF07730 Histidine kinase JN178_RS16370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS16380 PF00271 Helicase conserved C-terminal domain JN178_RS16380 PF00270 DEAD/DEAH box helicase JN178_RS16385 PF05552 Conserved TM helix JN178_RS16385 PF00924 Mechanosensitive ion channel JN178_RS16395 PF00141 Peroxidase JN178_RS16405 PF13426 PAS domain JN178_RS16405 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS16405 PF00563 EAL domain JN178_RS16415 PF03372 Endonuclease/Exonuclease/phosphatase family JN178_RS16420 PF03466 LysR substrate binding domain JN178_RS16420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS16430 PF01925 Sulfite exporter TauE/SafE JN178_RS16435 PF00155 Aminotransferase class I and II JN178_RS16440 PF00072 Response regulator receiver domain JN178_RS16440 PF08769 Sporulation initiation factor Spo0A C terminal JN178_RS16450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS16450 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS16450 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN178_RS16460 PF03104 DNA polymerase family B, exonuclease domain JN178_RS16460 PF00136 DNA polymerase family B JN178_RS16505 PF05958 tRNA (Uracil-5-)-methyltransferase JN178_RS16510 PF00440 Bacterial regulatory proteins, tetR family JN178_RS16520 PF12697 Alpha/beta hydrolase family JN178_RS16530 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS16530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JN178_RS16540 PF03167 Uracil DNA glycosylase superfamily JN178_RS16545 PF03707 Bacterial signalling protein N terminal repeat JN178_RS16545 PF00563 EAL domain JN178_RS16545 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS16555 PF01507 Phosphoadenosine phosphosulfate reductase family JN178_RS16560 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JN178_RS16560 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JN178_RS16565 PF00175 Oxidoreductase NAD-binding domain JN178_RS16565 PF00258 Flavodoxin JN178_RS16565 PF00667 FAD binding domain JN178_RS16585 PF04024 PspC domain JN178_RS16590 PF04012 PspA/IM30 family JN178_RS16605 PF01207 Dihydrouridine synthase (Dus) JN178_RS16615 PF01389 OmpA-like transmembrane domain JN178_RS16615 PF00691 OmpA family JN178_RS16620 PF10431 C-terminal, D2-small domain, of ClpB protein JN178_RS16620 PF00004 ATPase family associated with various cellular activities (AAA) JN178_RS16620 PF02861 Clp amino terminal domain, pathogenicity island component JN178_RS16620 PF07724 AAA domain (Cdc48 subfamily) JN178_RS16620 PF17871 AAA lid domain JN178_RS16625 PF00563 EAL domain JN178_RS16625 PF03707 Bacterial signalling protein N terminal repeat JN178_RS16625 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS16630 PF00756 Putative esterase JN178_RS16635 PF01553 Acyltransferase JN178_RS16640 PF01553 Acyltransferase JN178_RS16645 PF00924 Mechanosensitive ion channel JN178_RS16660 PF01370 NAD dependent epimerase/dehydratase family JN178_RS16665 PF00209 Sodium:neurotransmitter symporter family JN178_RS16680 PF01625 Peptide methionine sulfoxide reductase JN178_RS16695 PF00258 Flavodoxin JN178_RS16705 PF02472 Biopolymer transport protein ExbD/TolR JN178_RS16715 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) JN178_RS16720 PF01270 Glycosyl hydrolases family 8 JN178_RS16730 PF07238 PilZ domain JN178_RS16730 PF03170 Bacterial cellulose synthase subunit JN178_RS16730 PF03552 Cellulose synthase JN178_RS16730 PF00535 Glycosyl transferase family 2 JN178_RS16745 PF05175 Methyltransferase small domain JN178_RS16750 PF13460 NAD(P)H-binding JN178_RS16755 PF00326 Prolyl oligopeptidase family JN178_RS16755 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region JN178_RS16760 PF00082 Subtilase family JN178_RS16765 PF08000 Bacterial PH domain JN178_RS16770 PF00563 EAL domain JN178_RS16770 PF08448 PAS fold JN178_RS16770 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS16775 PF00291 Pyridoxal-phosphate dependent enzyme JN178_RS16780 PF07969 Amidohydrolase family JN178_RS16790 PF00753 Metallo-beta-lactamase superfamily JN178_RS16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS16800 PF03466 LysR substrate binding domain JN178_RS16805 PF13230 Glutamine amidotransferases class-II JN178_RS16835 PF09905 DNA-binding protein VF530 JN178_RS16840 PF00753 Metallo-beta-lactamase superfamily JN178_RS16850 PF11798 IMS family HHH motif JN178_RS16850 PF00817 impB/mucB/samB family JN178_RS16850 PF11799 impB/mucB/samB family C-terminal domain JN178_RS16860 PF02424 ApbE family JN178_RS16865 PF00111 2Fe-2S iron-sulfur cluster binding domain JN178_RS16865 PF00175 Oxidoreductase NAD-binding domain JN178_RS16865 PF00970 Oxidoreductase FAD-binding domain JN178_RS16870 PF02508 Rnf-Nqr subunit, membrane protein JN178_RS16875 PF02508 Rnf-Nqr subunit, membrane protein JN178_RS16880 PF04205 FMN-binding domain JN178_RS16885 PF03116 NQR2, RnfD, RnfE family JN178_RS16890 PF11973 NQRA C-terminal domain JN178_RS16890 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JN178_RS16895 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JN178_RS16895 PF07055 Enoyl reductase FAD binding domain JN178_RS16895 PF12241 Trans-2-enoyl-CoA reductase catalytic region JN178_RS16900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN178_RS16900 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JN178_RS16905 PF00311 Phosphoenolpyruvate carboxylase JN178_RS16920 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JN178_RS16920 PF00056 lactate/malate dehydrogenase, NAD binding domain JN178_RS16925 PF02863 Arginine repressor, C-terminal domain JN178_RS16925 PF01316 Arginine repressor, DNA binding domain JN178_RS16935 PF00593 TonB dependent receptor JN178_RS16950 PF00485 Phosphoribulokinase / Uridine kinase family JN178_RS16955 PF07670 Nucleoside recognition JN178_RS16955 PF01773 Na+ dependent nucleoside transporter N-terminus JN178_RS16955 PF07662 Na+ dependent nucleoside transporter C-terminus JN178_RS16980 PF01380 SIS domain JN178_RS16980 PF00571 CBS domain JN178_RS16985 PF00474 Sodium:solute symporter family JN178_RS16995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS16995 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS16995 PF00072 Response regulator receiver domain JN178_RS16995 PF09456 RcsC Alpha-Beta-Loop (ABL) JN178_RS17005 PF18030 RimK PreATP-grasp domain JN178_RS17005 PF08443 RimK-like ATP-grasp domain JN178_RS17015 PF08443 RimK-like ATP-grasp domain JN178_RS17015 PF18030 RimK PreATP-grasp domain JN178_RS17025 PF00072 Response regulator receiver domain JN178_RS17025 PF00196 Bacterial regulatory proteins, luxR family JN178_RS17030 PF13193 AMP-binding enzyme C-terminal domain JN178_RS17030 PF16177 Acetyl-coenzyme A synthetase N-terminus JN178_RS17030 PF00501 AMP-binding enzyme JN178_RS17040 PF02690 Na+/Pi-cotransporter JN178_RS17045 PF00248 Aldo/keto reductase family JN178_RS17065 PF03707 Bacterial signalling protein N terminal repeat JN178_RS17065 PF00563 EAL domain JN178_RS17065 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS17070 PF03143 Elongation factor Tu C-terminal domain JN178_RS17070 PF00009 Elongation factor Tu GTP binding domain JN178_RS17070 PF03144 Elongation factor Tu domain 2 JN178_RS17095 PF03309 Type III pantothenate kinase JN178_RS17100 PF08279 HTH domain JN178_RS17100 PF03099 Biotin/lipoate A/B protein ligase family JN178_RS17100 PF02237 Biotin protein ligase C terminal domain JN178_RS17105 PF01565 FAD binding domain JN178_RS17105 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JN178_RS17110 PF00672 HAMP domain JN178_RS17110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS17110 PF12729 Four helix bundle sensory module for signal transduction JN178_RS17145 PF00005 ABC transporter JN178_RS17145 PF00664 ABC transporter transmembrane region JN178_RS17145 PF03412 Peptidase C39 family JN178_RS17150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS17150 PF03466 LysR substrate binding domain JN178_RS17160 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JN178_RS17160 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JN178_RS17160 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JN178_RS17165 PF00535 Glycosyl transferase family 2 JN178_RS17170 PF16363 GDP-mannose 4,6 dehydratase JN178_RS17175 PF04321 RmlD substrate binding domain JN178_RS17180 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JN178_RS17185 PF00483 Nucleotidyl transferase JN178_RS17200 PF00535 Glycosyl transferase family 2 JN178_RS17200 PF01501 Glycosyl transferase family 8 JN178_RS17205 PF00535 Glycosyl transferase family 2 JN178_RS17255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JN178_RS17255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JN178_RS17255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JN178_RS17260 PF02350 UDP-N-acetylglucosamine 2-epimerase JN178_RS17280 PF01196 Ribosomal protein L17 JN178_RS17285 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JN178_RS17285 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JN178_RS17285 PF01000 RNA polymerase Rpb3/RpoA insert domain JN178_RS17290 PF01479 S4 domain JN178_RS17290 PF00163 Ribosomal protein S4/S9 N-terminal domain JN178_RS17295 PF00411 Ribosomal protein S11 JN178_RS17300 PF00416 Ribosomal protein S13/S18 JN178_RS17305 PF00444 Ribosomal protein L36 JN178_RS17310 PF00344 SecY translocase JN178_RS17315 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JN178_RS17320 PF00327 Ribosomal protein L30p/L7e JN178_RS17325 PF00333 Ribosomal protein S5, N-terminal domain JN178_RS17325 PF03719 Ribosomal protein S5, C-terminal domain JN178_RS17330 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JN178_RS17335 PF00347 Ribosomal protein L6 JN178_RS17340 PF00410 Ribosomal protein S8 JN178_RS17345 PF00253 Ribosomal protein S14p/S29e JN178_RS17350 PF00673 ribosomal L5P family C-terminus JN178_RS17350 PF00281 Ribosomal protein L5 JN178_RS17355 PF00467 KOW motif JN178_RS17355 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JN178_RS17360 PF00238 Ribosomal protein L14p/L23e JN178_RS17365 PF09308 LuxQ, periplasmic JN178_RS17365 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS17365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS17365 PF00072 Response regulator receiver domain JN178_RS17375 PF00082 Subtilase family JN178_RS17375 PF05922 Peptidase inhibitor I9 JN178_RS17380 PF08032 RNA 2'-O ribose methyltransferase substrate binding JN178_RS17380 PF00588 SpoU rRNA Methylase family JN178_RS17385 PF08461 Ribonuclease R winged-helix domain JN178_RS17385 PF08206 Ribonuclease B OB domain JN178_RS17385 PF17876 Cold shock domain JN178_RS17385 PF00575 S1 RNA binding domain JN178_RS17385 PF00773 RNB domain JN178_RS17390 PF16655 PhoD-like phosphatase, N-terminal domain JN178_RS17390 PF09423 PhoD-like phosphatase JN178_RS17410 PF08238 Sel1 repeat JN178_RS17420 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JN178_RS17425 PF00970 Oxidoreductase FAD-binding domain JN178_RS17425 PF00175 Oxidoreductase NAD-binding domain JN178_RS17430 PF04389 Peptidase family M28 JN178_RS17430 PF04151 Bacterial pre-peptidase C-terminal domain JN178_RS17460 PF09411 Lipid A 3-O-deacylase (PagL) JN178_RS17470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS17470 PF08446 PAS fold JN178_RS17470 PF00360 Phytochrome region JN178_RS17470 PF01590 GAF domain JN178_RS17470 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS17490 PF08448 PAS fold JN178_RS17490 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS17505 PF04229 GrpB protein JN178_RS17505 PF13673 Acetyltransferase (GNAT) domain JN178_RS17515 PF03466 LysR substrate binding domain JN178_RS17515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS17535 PF01654 Cytochrome bd terminal oxidase subunit I JN178_RS17540 PF02322 Cytochrome bd terminal oxidase subunit II JN178_RS17545 PF13426 PAS domain JN178_RS17545 PF08447 PAS fold JN178_RS17545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS17550 PF13404 AsnC-type helix-turn-helix domain JN178_RS17550 PF01037 Lrp/AsnC ligand binding domain JN178_RS17560 PF00313 'Cold-shock' DNA-binding domain JN178_RS17565 PF03109 ABC1 family JN178_RS17575 PF01209 ubiE/COQ5 methyltransferase family JN178_RS17585 PF01432 Peptidase family M3 JN178_RS17590 PF00072 Response regulator receiver domain JN178_RS17600 PF00497 Bacterial extracellular solute-binding proteins, family 3 JN178_RS17600 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS17600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS17605 PF00158 Sigma-54 interaction domain JN178_RS17605 PF00072 Response regulator receiver domain JN178_RS17605 PF02954 Bacterial regulatory protein, Fis family JN178_RS17610 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS17610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JN178_RS17615 PF00072 Response regulator receiver domain JN178_RS17625 PF07676 WD40-like Beta Propeller Repeat JN178_RS17625 PF00326 Prolyl oligopeptidase family JN178_RS17655 PF00004 ATPase family associated with various cellular activities (AAA) JN178_RS17655 PF07724 AAA domain (Cdc48 subfamily) JN178_RS17660 PF00227 Proteasome subunit JN178_RS17665 PF00313 'Cold-shock' DNA-binding domain JN178_RS17685 PF05036 Sporulation related domain JN178_RS17690 PF00271 Helicase conserved C-terminal domain JN178_RS17690 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JN178_RS17690 PF00270 DEAD/DEAH box helicase JN178_RS17690 PF18074 Primosomal protein N C-terminal domain JN178_RS17690 PF17764 3′ DNA-binding domain (3′BD) JN178_RS17695 PF01197 Ribosomal protein L31 JN178_RS17705 PF03949 Malic enzyme, NAD binding domain JN178_RS17705 PF00390 Malic enzyme, N-terminal domain JN178_RS17710 PF01340 Met Apo-repressor, MetJ JN178_RS17715 PF02219 Methylenetetrahydrofolate reductase JN178_RS17720 PF03631 Virulence factor BrkB JN178_RS17735 PF00561 alpha/beta hydrolase fold JN178_RS17740 PF02580 D-Tyr-tRNA(Tyr) deacylase JN178_RS17745 PF09500 Putative thioesterase (yiiD_Cterm) JN178_RS17745 PF00583 Acetyltransferase (GNAT) family JN178_RS17750 PF00140 Sigma-70 factor, region 1.2 JN178_RS17750 PF04542 Sigma-70 region 2 JN178_RS17750 PF04545 Sigma-70, region 4 JN178_RS17755 PF00563 EAL domain JN178_RS17755 PF08668 HDOD domain JN178_RS17760 PF08668 HDOD domain JN178_RS17760 PF00563 EAL domain JN178_RS17765 PF18075 FtsX extracellular domain JN178_RS17770 PF00005 ABC transporter JN178_RS17775 PF00448 SRP54-type protein, GTPase domain JN178_RS17775 PF02881 SRP54-type protein, helical bundle domain JN178_RS17790 PF01914 MarC family integral membrane protein JN178_RS17800 PF12404 Peptidase JN178_RS17800 PF00883 Cytosol aminopeptidase family, catalytic domain JN178_RS17805 PF17746 SfsA N-terminal OB domain JN178_RS17805 PF03749 Sugar fermentation stimulation protein RE domain JN178_RS17810 PF01258 Prokaryotic dksA/traR C4-type zinc finger JN178_RS17815 PF00749 tRNA synthetases class I (E and Q), catalytic domain JN178_RS17820 PF12626 Polymerase A arginine-rich C-terminus JN178_RS17820 PF12627 Probable RNA and SrmB- binding site of polymerase A JN178_RS17820 PF01743 Poly A polymerase head domain JN178_RS17825 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JN178_RS17830 PF02548 Ketopantoate hydroxymethyltransferase JN178_RS17835 PF02569 Pantoate-beta-alanine ligase JN178_RS17840 PF00282 Pyridoxal-dependent decarboxylase conserved domain JN178_RS17855 PF01061 ABC-2 type transporter JN178_RS17860 PF00005 ABC transporter JN178_RS17865 PF02627 Carboxymuconolactone decarboxylase family JN178_RS17875 PF00486 Transcriptional regulatory protein, C terminal JN178_RS17875 PF00072 Response regulator receiver domain JN178_RS17880 PF00672 HAMP domain JN178_RS17880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS17880 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS17885 PF07715 TonB-dependent Receptor Plug Domain JN178_RS17885 PF00593 TonB dependent receptor JN178_RS17890 PF13640 2OG-Fe(II) oxygenase superfamily JN178_RS17890 PF18331 PKHD-type hydroxylase C-terminal domain JN178_RS17910 PF00571 CBS domain JN178_RS17910 PF01595 Cyclin M transmembrane N-terminal domain JN178_RS17915 PF03773 Predicted permease JN178_RS17920 PF13722 5TM C-terminal transporter carbon starvation CstA JN178_RS17920 PF02554 Carbon starvation protein CstA JN178_RS17930 PF00258 Flavodoxin JN178_RS17930 PF00175 Oxidoreductase NAD-binding domain JN178_RS17930 PF00667 FAD binding domain JN178_RS17960 PF02472 Biopolymer transport protein ExbD/TolR JN178_RS17970 PF01618 MotA/TolQ/ExbB proton channel family JN178_RS17980 PF07859 alpha/beta hydrolase fold JN178_RS17995 PF01638 HxlR-like helix-turn-helix JN178_RS18000 PF03144 Elongation factor Tu domain 2 JN178_RS18000 PF00009 Elongation factor Tu GTP binding domain JN178_RS18000 PF03143 Elongation factor Tu C-terminal domain JN178_RS18005 PF00679 Elongation factor G C-terminus JN178_RS18005 PF14492 Elongation Factor G, domain II JN178_RS18005 PF03144 Elongation factor Tu domain 2 JN178_RS18005 PF00009 Elongation factor Tu GTP binding domain JN178_RS18005 PF03764 Elongation factor G, domain IV JN178_RS18010 PF00177 Ribosomal protein S7p/S5e JN178_RS18015 PF00164 Ribosomal protein S12/S23 JN178_RS18020 PF05000 RNA polymerase Rpb1, domain 4 JN178_RS18020 PF04998 RNA polymerase Rpb1, domain 5 JN178_RS18020 PF04997 RNA polymerase Rpb1, domain 1 JN178_RS18020 PF00623 RNA polymerase Rpb1, domain 2 JN178_RS18020 PF04983 RNA polymerase Rpb1, domain 3 JN178_RS18025 PF10385 RNA polymerase beta subunit external 1 domain JN178_RS18025 PF00562 RNA polymerase Rpb2, domain 6 JN178_RS18025 PF04561 RNA polymerase Rpb2, domain 2 JN178_RS18025 PF04563 RNA polymerase beta subunit JN178_RS18025 PF04560 RNA polymerase Rpb2, domain 7 JN178_RS18025 PF04565 RNA polymerase Rpb2, domain 3 JN178_RS18030 PF00542 Ribosomal protein L7/L12 C-terminal domain JN178_RS18030 PF16320 Ribosomal protein L7/L12 dimerisation domain JN178_RS18035 PF00466 Ribosomal protein L10 JN178_RS18040 PF00687 Ribosomal protein L1p/L10e family JN178_RS18045 PF03946 Ribosomal protein L11, N-terminal domain JN178_RS18045 PF00298 Ribosomal protein L11, RNA binding domain JN178_RS18055 PF00467 KOW motif JN178_RS18055 PF02357 Transcription termination factor nusG JN178_RS18060 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JN178_RS18070 PF00005 ABC transporter JN178_RS18070 PF00664 ABC transporter transmembrane region JN178_RS18080 PF03737 Aldolase/RraA JN178_RS18085 PF05649 Peptidase family M13 JN178_RS18085 PF01431 Peptidase family M13 JN178_RS18100 PF00271 Helicase conserved C-terminal domain JN178_RS18100 PF00270 DEAD/DEAH box helicase JN178_RS18100 PF03880 DbpA RNA binding domain JN178_RS18110 PF01979 Amidohydrolase family JN178_RS18115 PF08212 Lipocalin-like domain JN178_RS18120 PF00248 Aldo/keto reductase family JN178_RS18125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JN178_RS18130 PF00924 Mechanosensitive ion channel JN178_RS18135 PF07690 Major Facilitator Superfamily JN178_RS18140 PF00128 Alpha amylase, catalytic domain JN178_RS18150 PF01227 GTP cyclohydrolase I JN178_RS18160 PF04371 Porphyromonas-type peptidyl-arginine deiminase JN178_RS18165 PF00795 Carbon-nitrogen hydrolase JN178_RS18175 PF00270 DEAD/DEAH box helicase JN178_RS18175 PF08494 DEAD/H associated JN178_RS18175 PF00271 Helicase conserved C-terminal domain JN178_RS18185 PF04679 ATP dependent DNA ligase C terminal region JN178_RS18185 PF01068 ATP dependent DNA ligase domain JN178_RS18185 PF04675 DNA ligase N terminus JN178_RS18190 PF00294 pfkB family carbohydrate kinase JN178_RS18205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS18205 PF03466 LysR substrate binding domain JN178_RS18210 PF00326 Prolyl oligopeptidase family JN178_RS18215 PF02798 Glutathione S-transferase, N-terminal domain JN178_RS18215 PF00043 Glutathione S-transferase, C-terminal domain JN178_RS18220 PF02798 Glutathione S-transferase, N-terminal domain JN178_RS18230 PF00561 alpha/beta hydrolase fold JN178_RS18245 PF00171 Aldehyde dehydrogenase family JN178_RS18250 PF00205 Thiamine pyrophosphate enzyme, central domain JN178_RS18250 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JN178_RS18250 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JN178_RS18260 PF00762 Ferrochelatase JN178_RS18265 PF03806 AbgT putative transporter family JN178_RS18270 PF01145 SPFH domain / Band 7 family JN178_RS18275 PF01145 SPFH domain / Band 7 family JN178_RS18275 PF12221 Bacterial membrane protein N terminal JN178_RS18280 PF13167 GTP-binding GTPase N-terminal JN178_RS18280 PF01926 50S ribosome-binding GTPase JN178_RS18280 PF16360 GTP-binding GTPase Middle Region JN178_RS18285 PF17209 Hfq protein JN178_RS18295 PF01119 DNA mismatch repair protein, C-terminal domain JN178_RS18295 PF08676 MutL C terminal dimerisation domain JN178_RS18300 PF01520 N-acetylmuramoyl-L-alanine amidase JN178_RS18305 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JN178_RS18310 PF03853 YjeF-related protein N-terminus JN178_RS18310 PF01256 Carbohydrate kinase JN178_RS18315 PF08331 Domain of unknown function (DUF1730) JN178_RS18325 PF01208 Uroporphyrinogen decarboxylase (URO-D) JN178_RS18330 PF00293 NUDIX domain JN178_RS18330 PF09297 NADH pyrophosphatase zinc ribbon domain JN178_RS18335 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JN178_RS18340 PF01475 Ferric uptake regulator family JN178_RS18350 PF01894 Uncharacterised protein family UPF0047 JN178_RS18355 PF00691 OmpA family JN178_RS18355 PF05736 OprF membrane domain JN178_RS18360 PF03796 DnaB-like helicase C terminal domain JN178_RS18360 PF00772 DnaB-like helicase N terminal domain JN178_RS18385 PF03473 MOSC domain JN178_RS18385 PF03475 3-alpha domain JN178_RS18405 PF00873 AcrB/AcrD/AcrF family JN178_RS18410 PF01281 Ribosomal protein L9, N-terminal domain JN178_RS18410 PF03948 Ribosomal protein L9, C-terminal domain JN178_RS18415 PF01084 Ribosomal protein S18 JN178_RS18420 PF01250 Ribosomal protein S6 JN178_RS18430 PF12704 MacB-like periplasmic core domain JN178_RS18430 PF02687 FtsX-like permease family JN178_RS18430 PF00005 ABC transporter JN178_RS18440 PF08447 PAS fold JN178_RS18440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS18445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS18445 PF13426 PAS domain JN178_RS18445 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS18445 PF00989 PAS fold JN178_RS18445 PF13188 PAS domain JN178_RS18450 PF12729 Four helix bundle sensory module for signal transduction JN178_RS18450 PF00672 HAMP domain JN178_RS18450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JN178_RS18465 PF03601 Conserved hypothetical protein 698 JN178_RS18475 PF00248 Aldo/keto reductase family JN178_RS18495 PF00474 Sodium:solute symporter family JN178_RS18500 PF07715 TonB-dependent Receptor Plug Domain JN178_RS18500 PF00593 TonB dependent receptor JN178_RS18505 PF01545 Cation efflux family JN178_RS18505 PF16916 Dimerisation domain of Zinc Transporter JN178_RS18510 PF00722 Glycosyl hydrolases family 16 JN178_RS18530 PF14310 Fibronectin type III-like domain JN178_RS18530 PF00933 Glycosyl hydrolase family 3 N terminal domain JN178_RS18530 PF01915 Glycosyl hydrolase family 3 C-terminal domain JN178_RS18535 PF07690 Major Facilitator Superfamily JN178_RS18540 PF00232 Glycosyl hydrolase family 1 JN178_RS18545 PF00356 Bacterial regulatory proteins, lacI family JN178_RS18550 PF00083 Sugar (and other) transporter JN178_RS18555 PF00005 ABC transporter JN178_RS18555 PF10649 Protein of unknown function (DUF2478) JN178_RS18555 PF03459 TOBE domain JN178_RS18560 PF00005 ABC transporter JN178_RS18560 PF00664 ABC transporter transmembrane region JN178_RS18565 PF08173 Membrane bound YbgT-like protein JN178_RS18570 PF02322 Cytochrome bd terminal oxidase subunit II JN178_RS18575 PF01654 Cytochrome bd terminal oxidase subunit I JN178_RS18580 PF00158 Sigma-54 interaction domain JN178_RS18580 PF02954 Bacterial regulatory protein, Fis family JN178_RS18610 PF13474 SnoaL-like domain JN178_RS18615 PF00857 Isochorismatase family JN178_RS18625 PF01979 Amidohydrolase family JN178_RS18630 PF05726 Pirin C-terminal cupin domain JN178_RS18630 PF02678 Pirin JN178_RS18640 PF07715 TonB-dependent Receptor Plug Domain JN178_RS18640 PF00593 TonB dependent receptor JN178_RS18655 PF02649 Type I GTP cyclohydrolase folE2 JN178_RS18695 PF01618 MotA/TolQ/ExbB proton channel family JN178_RS18735 PF00578 AhpC/TSA family JN178_RS18770 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS18770 PF00360 Phytochrome region JN178_RS18770 PF01590 GAF domain JN178_RS18770 PF00563 EAL domain JN178_RS18775 PF02424 ApbE family JN178_RS18805 PF05532 CsbD-like JN178_RS18815 PF00472 RF-1 domain JN178_RS18820 PF00561 alpha/beta hydrolase fold JN178_RS18820 PF00364 Biotin-requiring enzyme JN178_RS18845 PF01292 Prokaryotic cytochrome b561 JN178_RS18850 PF04264 YceI-like domain JN178_RS18855 PF07992 Pyridine nucleotide-disulphide oxidoreductase JN178_RS18860 PF07715 TonB-dependent Receptor Plug Domain JN178_RS18860 PF00593 TonB dependent receptor JN178_RS18870 PF01048 Phosphorylase superfamily JN178_RS18875 PF03466 LysR substrate binding domain JN178_RS18875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS18880 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JN178_RS18885 PF00360 Phytochrome region JN178_RS18885 PF01590 GAF domain JN178_RS18885 PF00563 EAL domain JN178_RS18885 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS18890 PF00989 PAS fold JN178_RS18890 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS18890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS18895 PF02954 Bacterial regulatory protein, Fis family JN178_RS18895 PF00158 Sigma-54 interaction domain JN178_RS18895 PF00072 Response regulator receiver domain JN178_RS18900 PF12704 MacB-like periplasmic core domain JN178_RS18900 PF02687 FtsX-like permease family JN178_RS18900 PF00005 ABC transporter JN178_RS18905 PF00005 ABC transporter JN178_RS18905 PF02687 FtsX-like permease family JN178_RS18905 PF12704 MacB-like periplasmic core domain JN178_RS18915 PF08448 PAS fold JN178_RS18915 PF00563 EAL domain JN178_RS18915 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS18925 PF00491 Arginase family JN178_RS18930 PF01380 SIS domain JN178_RS18935 PF00455 DeoR C terminal sensor domain JN178_RS18935 PF08220 DeoR-like helix-turn-helix domain JN178_RS18940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JN178_RS18940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JN178_RS18945 PF12804 MobA-like NTP transferase domain JN178_RS18945 PF00132 Bacterial transferase hexapeptide (six repeats) JN178_RS18945 PF14602 Hexapeptide repeat of succinyl-transferase JN178_RS18950 PF07694 5TMR of 5TMR-LYT JN178_RS18950 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS18960 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JN178_RS18960 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JN178_RS18965 PF02805 Metal binding domain of Ada JN178_RS18965 PF06029 AlkA N-terminal domain JN178_RS18965 PF00730 HhH-GPD superfamily base excision DNA repair protein JN178_RS18965 PF12833 Helix-turn-helix domain JN178_RS18970 PF00144 Beta-lactamase JN178_RS18975 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JN178_RS18975 PF17944 Arginine decarboxylase C-terminal helical extension JN178_RS18975 PF17810 Arginine decarboxylase helical bundle domain JN178_RS18985 PF02233 NAD(P) transhydrogenase beta subunit JN178_RS18990 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JN178_RS18995 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JN178_RS18995 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JN178_RS19005 PF04820 Tryptophan halogenase JN178_RS19035 PF07715 TonB-dependent Receptor Plug Domain JN178_RS19035 PF00593 TonB dependent receptor JN178_RS19065 PF13426 PAS domain JN178_RS19065 PF00990 Diguanylate cyclase, GGDEF domain JN178_RS19065 PF00563 EAL domain JN178_RS19075 PF03551 Transcriptional regulator PadR-like family JN178_RS19110 PF00239 Resolvase, N terminal domain JN178_RS19110 PF02796 Helix-turn-helix domain of resolvase JN178_RS19130 PF00075 RNase H JN178_RS19145 PF00118 TCP-1/cpn60 chaperonin family JN178_RS19150 PF00166 Chaperonin 10 Kd subunit JN178_RS19155 PF04186 FxsA cytoplasmic membrane protein JN178_RS19160 PF03091 CutA1 divalent ion tolerance protein JN178_RS19165 PF02683 Cytochrome C biogenesis protein transmembrane region JN178_RS19165 PF11412 Disulphide bond corrector protein DsbC JN178_RS19170 PF01551 Peptidase family M23 JN178_RS19175 PF01220 Dehydroquinase class II JN178_RS19180 PF00364 Biotin-requiring enzyme JN178_RS19185 PF00289 Biotin carboxylase, N-terminal domain JN178_RS19185 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JN178_RS19185 PF02785 Biotin carboxylase C-terminal domain JN178_RS19215 PF02811 PHP domain JN178_RS19215 PF11490 DNA polymerase III polC-type N-terminus II JN178_RS19215 PF07733 Bacterial DNA polymerase III alpha NTPase domain JN178_RS19215 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JN178_RS19215 PF14579 Helix-hairpin-helix motif JN178_RS19215 PF00929 Exonuclease JN178_RS19230 PF01355 High potential iron-sulfur protein JN178_RS19235 PF01425 Amidase JN178_RS19250 PF01207 Dihydrouridine synthase (Dus) JN178_RS19255 PF02954 Bacterial regulatory protein, Fis family JN178_RS19260 PF02142 MGS-like domain JN178_RS19260 PF01808 AICARFT/IMPCHase bienzyme JN178_RS19270 PF02844 Phosphoribosylglycinamide synthetase, N domain JN178_RS19270 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JN178_RS19270 PF02843 Phosphoribosylglycinamide synthetase, C domain JN178_RS19280 PF00027 Cyclic nucleotide-binding domain JN178_RS19280 PF00520 Ion transport protein JN178_RS19285 PF00485 Phosphoribulokinase / Uridine kinase family JN178_RS19300 PF00486 Transcriptional regulatory protein, C terminal JN178_RS19300 PF00072 Response regulator receiver domain JN178_RS19305 PF00672 HAMP domain JN178_RS19305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JN178_RS19305 PF00512 His Kinase A (phospho-acceptor) domain JN178_RS19315 PF16338 Domain of unknown function (DUF4968) JN178_RS19315 PF17137 Domain of unknown function (DUF5110) JN178_RS19315 PF13802 Galactose mutarotase-like JN178_RS19315 PF01055 Glycosyl hydrolases family 31 JN178_RS19325 PF01293 Phosphoenolpyruvate carboxykinase JN178_RS19330 PF01430 Hsp33 protein JN178_RS19335 PF01479 S4 domain JN178_RS19340 PF11356 Type II secretion system protein C JN178_RS19345 PF03958 Bacterial type II/III secretion system short domain JN178_RS19345 PF00263 Bacterial type II and III secretion system protein JN178_RS19350 PF00437 Type II/IV secretion system protein JN178_RS19355 PF00482 Type II secretion system (T2SS), protein F JN178_RS19360 PF08334 Type II secretion system (T2SS), protein G JN178_RS19360 PF07963 Prokaryotic N-terminal methylation motif JN178_RS19365 PF12019 Type II transport protein GspH JN178_RS19370 PF07963 Prokaryotic N-terminal methylation motif JN178_RS19370 PF02501 Type II secretion system (T2SS), protein I JN178_RS19375 PF11612 Type II secretion system (T2SS), protein J JN178_RS19375 PF07963 Prokaryotic N-terminal methylation motif JN178_RS19385 PF05134 Type II secretion system (T2SS), protein L JN178_RS19385 PF12693 GspL periplasmic domain JN178_RS19390 PF04612 Type II secretion system (T2SS), protein M JN178_RS19405 PF12706 Beta-lactamase superfamily domain JN178_RS19410 PF00171 Aldehyde dehydrogenase family JN178_RS19415 PF01931 Protein of unknown function DUF84 JN178_RS19420 PF13419 Haloacid dehalogenase-like hydrolase JN178_RS19425 PF00293 NUDIX domain JN178_RS19430 PF00459 Inositol monophosphatase family JN178_RS19440 PF00535 Glycosyl transferase family 2 JN178_RS19445 PF04349 Periplasmic glucan biosynthesis protein, MdoG JN178_RS19455 PF06794 Uncharacterised protein family (UPF0270) JN178_RS19460 PF00561 alpha/beta hydrolase fold JN178_RS19470 PF00005 ABC transporter JN178_RS19470 PF12848 ABC transporter JN178_RS19500 PF04102 SlyX JN178_RS19510 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JN178_RS19510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JN178_RS19515 PF03449 Transcription elongation factor, N-terminal JN178_RS19515 PF01272 Transcription elongation factor, GreA/GreB, C-term JN178_RS19520 PF09371 Tex-like protein N-terminal domain JN178_RS19520 PF00575 S1 RNA binding domain JN178_RS19520 PF17674 HHH domain JN178_RS19520 PF16921 Tex protein YqgF-like domain JN178_RS19535 PF00561 alpha/beta hydrolase fold JN178_RS19540 PF00156 Phosphoribosyl transferase domain JN178_RS19550 PF01106 NifU-like domain JN178_RS19550 PF01521 Iron-sulphur cluster biosynthesis JN178_RS19560 PF01177 Asp/Glu/Hydantoin racemase JN178_RS19575 PF01554 MatE JN178_RS19580 PF14883 Hypothetical glycosyl hydrolase family 13 JN178_RS19580 PF01522 Polysaccharide deacetylase JN178_RS19590 PF02630 SCO1/SenC JN178_RS19595 PF01040 UbiA prenyltransferase family JN178_RS19600 PF02628 Cytochrome oxidase assembly protein JN178_RS19620 PF00510 Cytochrome c oxidase subunit III JN178_RS19625 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JN178_RS19630 PF00115 Cytochrome C and Quinol oxidase polypeptide I JN178_RS19635 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JN178_RS19635 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JN178_RS19640 PF01726 LexA DNA binding domain JN178_RS19640 PF00717 Peptidase S24-like JN178_RS19650 PF01553 Acyltransferase JN178_RS19655 PF00291 Pyridoxal-phosphate dependent enzyme JN178_RS19655 PF00585 C-terminal regulatory domain of Threonine dehydratase JN178_RS19660 PF00920 Dehydratase family JN178_RS19665 PF03458 UPF0126 domain JN178_RS19670 PF01078 Magnesium chelatase, subunit ChlI JN178_RS19670 PF13335 Magnesium chelatase, subunit ChlI C-terminal JN178_RS19675 PF03466 LysR substrate binding domain JN178_RS19675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JN178_RS19680 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JN178_RS19680 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JN178_RS19715 PF07690 Major Facilitator Superfamily JN178_RS19720 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JN178_RS19725 PF17243 POTRA domain TamA domain 1 JN178_RS19725 PF07244 Surface antigen variable number repeat JN178_RS19725 PF01103 Surface antigen JN178_RS19730 PF04357 TamB, inner membrane protein subunit of TAM complex JN178_RS19740 PF04542 Sigma-70 region 2 JN178_RS19740 PF08281 Sigma-70, region 4 JN178_RS19755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JN178_RS19755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JN178_RS19765 PF00696 Amino acid kinase family JN178_RS19765 PF01472 PUA domain JN178_RS19785 PF03109 ABC1 family JN178_RS19795 PF04116 Fatty acid hydroxylase superfamily JN178_RS19810 PF01979 Amidohydrolase family JN178_RS19835 PF01206 Sulfurtransferase TusA JN178_RS19840 PF00156 Phosphoribosyl transferase domain JN178_RS19845 PF03725 3' exoribonuclease family, domain 2 JN178_RS19845 PF01138 3' exoribonuclease family, domain 1 JN178_RS19850 PF08340 Domain of unknown function (DUF1732) JN178_RS19850 PF03755 YicC-like family, N-terminal region JN178_RS19875 PF00145 C-5 cytosine-specific DNA methylase JN178_RS19880 PF01580 FtsK/SpoIIIE family JN178_RS19880 PF09397 Ftsk gamma domain JN178_RS19880 PF17854 FtsK alpha domain JN178_RS19880 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JN178_RS19920 PF00232 Glycosyl hydrolase family 1 JN178_RS19930 PF00356 Bacterial regulatory proteins, lacI family JN178_RS19940 PF00691 OmpA family JN178_RS19940 PF05736 OprF membrane domain JN178_RS19945 PF01966 HD domain JN178_RS19950 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JN178_RS19950 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JN178_RS19960 PF02798 Glutathione S-transferase, N-terminal domain JN178_RS19960 PF00043 Glutathione S-transferase, C-terminal domain JN178_RS19970 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JN178_RS19970 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JN178_RS19975 PF02874 ATP synthase alpha/beta family, beta-barrel domain JN178_RS19975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JN178_RS19980 PF00231 ATP synthase JN178_RS19985 PF00306 ATP synthase alpha/beta chain, C terminal domain JN178_RS19985 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JN178_RS19985 PF02874 ATP synthase alpha/beta family, beta-barrel domain JN178_RS19990 PF00213 ATP synthase delta (OSCP) subunit JN178_RS19995 PF00430 ATP synthase B/B' CF(0) JN178_RS20000 PF00137 ATP synthase subunit C JN178_RS20005 PF00119 ATP synthase A chain JN178_RS20015 PF02195 ParB-like nuclease domain JN178_RS20015 PF17762 HTH domain found in ParB protein JN178_RS20020 PF13614 AAA domain JN178_RS20025 PF02527 rRNA small subunit methyltransferase G JN178_RS20030 PF13932 GidA associated domain JN178_RS20030 PF01134 Glucose inhibited division protein A JN178_RS20035 PF00005 ABC transporter JN178_RS20035 PF16326 ABC transporter C-terminal domain JN178_RS20035 PF12848 ABC transporter JN178_RS20050 PF00258 Flavodoxin JN178_RS20055 PF10396 GTP-binding protein TrmE N-terminus JN178_RS20055 PF01926 50S ribosome-binding GTPase JN178_RS20055 PF12631 MnmE helical domain JN178_RS20075 PF00239 Resolvase, N terminal domain JN178_RS20075 PF02796 Helix-turn-helix domain of resolvase JN178_RS20085 PF04461 Protein of unknown function (DUF520) JN178_RS20090 PF14849 YidC periplasmic domain JN178_RS20090 PF02096 60Kd inner membrane protein JN178_RS20095 PF01809 Putative membrane protein insertion efficiency factor JN178_RS20100 PF00825 Ribonuclease P JN178_RS20105 PF00468 Ribosomal protein L34