locus-tag	class	description
AMJAP_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AMJAP_RS00010	COG0592	DNA-directed DNA polymerase activity
AMJAP_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AMJAP_RS00110	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AMJAP_RS00115	COG0751	glycine-tRNA ligase activity
AMJAP_RS00120	COG0752	glycyl-tRNA synthetase alpha subunit
AMJAP_RS00135	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AMJAP_RS00140	COG0569	domain protein
AMJAP_RS00145	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMJAP_RS00155	COG0242	peptide deformylase activity
AMJAP_RS00165	COG0758	DNA mediated transformation
AMJAP_RS00170	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AMJAP_RS00175	COG0009	L-threonylcarbamoyladenylate synthase
AMJAP_RS00180	COG0408	coproporphyrinogen oxidase activity
AMJAP_RS00185	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AMJAP_RS00190	COG1067	ATP-dependent peptidase activity
AMJAP_RS00240	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AMJAP_RS00245	COG0339	signal peptide processing
AMJAP_RS00250	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
AMJAP_RS00255	COG0519	Catalyzes the synthesis of GMP from XMP
AMJAP_RS00270	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AMJAP_RS00280	COG0735	belongs to the Fur family
AMJAP_RS00285	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
AMJAP_RS00315	COG0583	DNA-binding transcription factor activity
AMJAP_RS00350	COG0678	peroxiredoxin activity
AMJAP_RS00350	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AMJAP_RS00355	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AMJAP_RS00365	COG2217	Heavy metal translocating P-type atpase
AMJAP_RS00375	COG0789	Transcriptional regulator
AMJAP_RS00390	COG2252	PERMEase
AMJAP_RS00405	COG3829	transcription factor binding
AMJAP_RS00420	COG0577	efflux transmembrane transporter activity
AMJAP_RS00420	COG1136	(ABC) transporter
AMJAP_RS00435	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
AMJAP_RS00460	COG2759	Belongs to the formate--tetrahydrofolate ligase family
AMJAP_RS00470	COG2207	Transcriptional regulator
AMJAP_RS00485	COG2207	Transcriptional regulator
AMJAP_RS00510	COG0589	response to stress
AMJAP_RS00515	COG2902	Dehydrogenase
AMJAP_RS00535	COG2204	response regulator
AMJAP_RS00540	COG4191	Histidine kinase
AMJAP_RS00550	COG3273	potassium ion transport
AMJAP_RS00550	COG0471	metal ion transport
AMJAP_RS00565	COG0247	lactate metabolic process
AMJAP_RS00570	COG0277	FAD linked oxidase domain protein
AMJAP_RS00575	COG0277	FAD linked oxidase domain protein
AMJAP_RS00585	COG0583	DNA-binding transcription factor activity
AMJAP_RS00615	COG1194	a g-specific adenine glycosylase
AMJAP_RS00625	COG0131	Imidazoleglycerol-phosphate dehydratase
AMJAP_RS00630	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AMJAP_RS00635	COG0107	imidazoleglycerol-phosphate synthase activity
AMJAP_RS00640	COG1448	Aminotransferase
AMJAP_RS00650	COG1522	sequence-specific DNA binding
AMJAP_RS00655	COG3706	GGDEF domain
AMJAP_RS00665	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
AMJAP_RS00700	COG0702	epimerase
AMJAP_RS00705	COG0583	DNA-binding transcription factor activity
AMJAP_RS00710	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMJAP_RS00725	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AMJAP_RS00730	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AMJAP_RS00735	COG0501	Belongs to the peptidase M48B family
AMJAP_RS00740	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_RS00750	COG0742	ribosomal rna small subunit methyltransferase
AMJAP_RS00760	COG0552	protein localization to endoplasmic reticulum
AMJAP_RS00765	COG2884	Cell division ATP-binding protein ftsE
AMJAP_RS00770	COG2177	Part of the ABC transporter FtsEX involved in
AMJAP_RS00780	COG2363	Small membrane protein
AMJAP_RS00795	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AMJAP_RS00825	COG0745	RESPONSE REGULATOR receiver
AMJAP_RS00835	COG5001	Diguanylate cyclase
AMJAP_RS00835	COG5002	protein histidine kinase activity
AMJAP_RS00840	COG3724	N-succinylarginine dihydrolase activity
AMJAP_RS00845	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_RS00865	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMJAP_RS00875	COG0004	ammonium transporteR
AMJAP_RS00885	COG2960	long-chain fatty acid transporting porin activity
AMJAP_RS00890	COG2205	protein histidine kinase activity
AMJAP_RS00935	COG0564	pseudouridine synthase activity
AMJAP_RS00945	COG2989	Protein conserved in bacteria
AMJAP_RS00955	COG2207	Transcriptional regulator
AMJAP_RS00960	COG1024	Enoyl-CoA hydratase
AMJAP_RS00980	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMJAP_RS00985	COG0671	phosphoesterase, PA-phosphatase related
AMJAP_RS00990	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMJAP_RS01000	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AMJAP_RS01050	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMJAP_RS01050	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AMJAP_RS01060	COG0306	phosphate transporter
AMJAP_RS01065	COG1392	Phosphate transport regulator
AMJAP_RS01075	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMJAP_RS01080	COG0859	PFAM glycosyl transferase family 9
AMJAP_RS01090	COG0463	Glycosyl transferase, family 2
AMJAP_RS01110	COG0463	Glycosyl transferase, family 2
AMJAP_RS01110	COG1216	Glycosyl transferase, family 2
AMJAP_RS01115	COG1560	Kdo2-lipid A biosynthetic process
AMJAP_RS01120	COG1132	(ABC) transporter
AMJAP_RS01135	COG0656	L-ascorbic acid biosynthetic process
AMJAP_RS01145	COG1519	Transferase
AMJAP_RS01150	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AMJAP_RS01155	COG1965	Belongs to the frataxin family
AMJAP_RS01170	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AMJAP_RS01205	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_RS01215	COG2030	dehydratase
AMJAP_RS01230	COG4191	Histidine kinase
AMJAP_RS01235	COG4566	intracellular signal transduction
AMJAP_RS01250	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMJAP_RS01255	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AMJAP_RS01265	COG2813	Specifically methylates the guanine in position
AMJAP_RS01265	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMJAP_RS01270	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMJAP_RS01275	COG1872	DUF167
AMJAP_RS01310	COG0540	Belongs to the ATCase OTCase family
AMJAP_RS01320	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AMJAP_RS01325	COG1678	Uncharacterized ACR, COG1678
AMJAP_RS01335	COG0189	ligase activity
AMJAP_RS01340	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AMJAP_RS01345	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AMJAP_RS01350	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AMJAP_RS01360	COG0126	phosphoglycerate kinase activity
AMJAP_RS01375	COG0583	DNA-binding transcription factor activity
AMJAP_RS01400	COG1573	uracil-dna glycosylase
AMJAP_RS01410	COG0583	DNA-binding transcription factor activity
AMJAP_RS01445	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMJAP_RS01450	COG0513	Belongs to the DEAD box helicase family
AMJAP_RS01460	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AMJAP_RS01475	COG1511	domain protein
AMJAP_RS01475	COG3264	Mechanosensitive ion channel
AMJAP_RS01485	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMJAP_RS01495	COG0583	DNA-binding transcription factor activity
AMJAP_RS01500	COG2814	Major facilitator Superfamily
AMJAP_RS01505	COG0179	Fumarylacetoacetate (FAA) hydrolase
AMJAP_RS01510	COG1981	membrane
AMJAP_RS01520	COG2226	methyltransferase
AMJAP_RS01530	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AMJAP_RS01535	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AMJAP_RS01545	COG0018	arginyl-trna synthetase
AMJAP_RS01550	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AMJAP_RS01555	COG0254	rRNA binding
AMJAP_RS01560	COG0281	malic enzyme
AMJAP_RS01600	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AMJAP_RS01610	COG0070	glutamate synthase
AMJAP_RS01610	COG0069	glutamate synthase activity
AMJAP_RS01610	COG0067	glutamate synthase
AMJAP_RS01615	COG0493	'glutamate synthase
AMJAP_RS01620	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AMJAP_RS01625	COG0288	reversible hydration of carbon dioxide
AMJAP_RS01630	COG2873	o-acetylhomoserine
AMJAP_RS01635	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
AMJAP_RS01645	COG0488	(ABC) transporter
AMJAP_RS01650	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMJAP_RS01655	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AMJAP_RS01660	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMJAP_RS01660	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMJAP_RS01680	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMJAP_RS01685	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AMJAP_RS01690	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AMJAP_RS01710	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AMJAP_RS01715	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AMJAP_RS01720	COG0142	geranyltranstransferase activity
AMJAP_RS01725	COG1722	exodeoxyribonuclease VII activity
AMJAP_RS01730	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AMJAP_RS01735	COG1360	Flagellar Motor Protein
AMJAP_RS01775	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMJAP_RS01785	COG2010	Cytochrome c
AMJAP_RS01800	COG0733	neurotransmitter:sodium symporter activity
AMJAP_RS01845	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AMJAP_RS01850	COG0733	neurotransmitter:sodium symporter activity
AMJAP_RS01855	COG2867	negative regulation of translational initiation
AMJAP_RS01860	COG2914	Belongs to the UPF0125 (RnfH) family
AMJAP_RS01870	COG0735	belongs to the Fur family
AMJAP_RS01875	COG0497	DNA recombination
AMJAP_RS01880	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AMJAP_RS01885	COG0443	Heat shock 70 kDa protein
AMJAP_RS01890	COG0484	heat shock protein binding
AMJAP_RS01895	COG1045	serine acetyltransferase
AMJAP_RS01900	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AMJAP_RS01915	COG2095	MarC family integral membrane protein
AMJAP_RS01945	COG0811	peptide transport
AMJAP_RS01965	COG0494	nUDIX hydrolase
AMJAP_RS01980	COG0011	TIGRFAM Protein of
AMJAP_RS01985	COG4536	flavin adenine dinucleotide binding
AMJAP_RS01995	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMJAP_RS02000	COG0228	four-way junction DNA binding
AMJAP_RS02005	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AMJAP_RS02010	COG0336	Belongs to the RNA methyltransferase TrmD family
AMJAP_RS02015	COG0335	large ribosomal subunit rRNA binding
AMJAP_RS02025	COG4974	Belongs to the 'phage' integrase family
AMJAP_RS02030	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMJAP_RS02060	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
AMJAP_RS02070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMJAP_RS02105	COG0494	nUDIX hydrolase
AMJAP_RS02110	COG3151	Protein conserved in bacteria
AMJAP_RS02115	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AMJAP_RS02120	COG3150	esterase
AMJAP_RS02155	COG1280	lysine exporter protein (LysE YggA)
AMJAP_RS02160	COG0730	response to heat
AMJAP_RS02170	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AMJAP_RS02175	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AMJAP_RS02185	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AMJAP_RS02190	COG0768	penicillin binding
AMJAP_RS02195	COG0772	Belongs to the SEDS family
AMJAP_RS02200	COG2951	lytic endotransglycosylase activity
AMJAP_RS02205	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AMJAP_RS02210	COG1686	Belongs to the peptidase S11 family
AMJAP_RS02225	COG0321	lipoyl(octanoyl) transferase activity
AMJAP_RS02230	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AMJAP_RS02240	COG0463	Glycosyl transferase, family 2
AMJAP_RS02245	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMJAP_RS02250	COG0671	phosphoesterase, PA-phosphatase related
AMJAP_RS02265	COG0583	DNA-binding transcription factor activity
AMJAP_RS02275	COG1466	dna polymerase III delta subunit
AMJAP_RS02285	COG0495	leucyl-tRNA aminoacylation
AMJAP_RS02295	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AMJAP_RS02300	COG4535	Mg2 and Co2 transporter CorC
AMJAP_RS02305	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AMJAP_RS02310	COG1702	phosphate starvation-inducible protein PhoH
AMJAP_RS02315	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMJAP_RS02325	COG3152	Membrane
AMJAP_RS02330	COG5002	protein histidine kinase activity
AMJAP_RS02330	COG5001	Diguanylate cyclase
AMJAP_RS02340	COG1509	lysine 2,3-aminomutase activity
AMJAP_RS02345	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMJAP_RS02370	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMJAP_RS02380	COG0456	acetyltransferase
AMJAP_RS02390	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AMJAP_RS02405	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AMJAP_RS02410	COG0084	hydrolase, TatD family'
AMJAP_RS02425	COG2885	chlorophyll binding
AMJAP_RS02455	COG0024	Methionine aminopeptidase
AMJAP_RS02460	COG0052	Belongs to the universal ribosomal protein uS2 family
AMJAP_RS02465	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AMJAP_RS02470	COG0528	UMP kinase activity
AMJAP_RS02475	COG0233	cytoplasmic translational termination
AMJAP_RS02510	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMJAP_RS02515	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMJAP_RS02520	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMJAP_RS02525	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AMJAP_RS02530	COG0587	DNA-directed DNA polymerase activity
AMJAP_RS02540	COG0037	tRNA processing
AMJAP_RS02550	COG0148	phosphopyruvate hydratase activity
AMJAP_RS02555	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AMJAP_RS02560	COG0585	pseudouridine synthase activity
AMJAP_RS02565	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AMJAP_RS02570	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMJAP_RS02590	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AMJAP_RS02595	COG1215	transferase activity, transferring glycosyl groups
AMJAP_RS02650	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
AMJAP_RS02660	COG0438	transferase activity, transferring glycosyl groups
AMJAP_RS02660	COG1216	Glycosyl transferase, family 2
AMJAP_RS02675	COG0300	oxidoreductase activity
AMJAP_RS02685	COG0156	8-amino-7-oxononanoate synthase activity
AMJAP_RS02690	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_RS02690	COG0604	alcohol dehydrogenase
AMJAP_RS02690	COG3321	synthase
AMJAP_RS02705	COG1546	Belongs to the CinA family
AMJAP_RS02710	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AMJAP_RS02715	COG2137	regulation of response to DNA damage stimulus
AMJAP_RS02720	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AMJAP_RS02725	COG0527	aspartate kinase activity
AMJAP_RS02730	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
AMJAP_RS02760	COG2274	protein secretion by the type I secretion system
AMJAP_RS02765	COG2274	protein secretion by the type I secretion system
AMJAP_RS02775	COG0301	tRNA thio-modification
AMJAP_RS02775	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMJAP_RS02790	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
AMJAP_RS02795	COG0123	including yeast histone deacetylase and acetoin utilization protein
AMJAP_RS02800	COG0745	RESPONSE REGULATOR receiver
AMJAP_RS02830	COG0784	Response regulator, receiver
AMJAP_RS02830	COG0835	chemotaxis
AMJAP_RS02835	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMJAP_RS02840	COG1815	bacterial-type flagellum-dependent cell motility
AMJAP_RS02845	COG1558	bacterial-type flagellum-dependent cell motility
AMJAP_RS02850	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AMJAP_RS02860	COG4787	bacterial-type flagellum-dependent cell motility
AMJAP_RS02870	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AMJAP_RS02875	COG1706	bacterial-type flagellum-dependent cell motility
AMJAP_RS02935	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMJAP_RS02950	COG0784	Response regulator, receiver
AMJAP_RS02950	COG2205	protein histidine kinase activity
AMJAP_RS02960	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMJAP_RS02970	COG2176	DNA-directed DNA polymerase activity
AMJAP_RS02975	COG1677	Flagellar hook-basal body complex protein FliE
AMJAP_RS02985	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AMJAP_RS03005	COG3144	bacterial-type flagellum assembly
AMJAP_RS03035	COG1987	bacterial-type flagellum assembly
AMJAP_RS03040	COG1684	flagellar biosynthetic protein fliR
AMJAP_RS03075	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
AMJAP_RS03080	COG0643	Histidine kinase
AMJAP_RS03080	COG2198	Histidine kinase
AMJAP_RS03090	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AMJAP_RS03095	COG1360	Flagellar Motor Protein
AMJAP_RS03100	COG1192	Involved in chromosome partitioning
AMJAP_RS03115	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMJAP_RS03125	COG4133	protoheme IX ABC transporter activity
AMJAP_RS03130	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMJAP_RS03145	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMJAP_RS03150	COG1138	Cytochrome C-type biogenesis protein
AMJAP_RS03175	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AMJAP_RS03200	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
AMJAP_RS03200	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJAP_RS03205	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
AMJAP_RS03250	COG1215	transferase activity, transferring glycosyl groups
AMJAP_RS03270	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AMJAP_RS03290	COG0358	DNA primase activity
AMJAP_RS03300	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AMJAP_RS03305	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AMJAP_RS03310	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AMJAP_RS03330	COG1704	LemA family
AMJAP_RS03335	COG0501	Belongs to the peptidase M48B family
AMJAP_RS03340	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_RS03345	COG0617	tRNA 3'-terminal CCA addition
AMJAP_RS03350	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMJAP_RS03355	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMJAP_RS03360	COG2967	ApaG domain
AMJAP_RS03365	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AMJAP_RS03380	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AMJAP_RS03385	COG3178	'Phosphotransferase
AMJAP_RS03390	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AMJAP_RS03395	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AMJAP_RS03405	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AMJAP_RS03410	COG0546	phosphoglycolate phosphatase activity
AMJAP_RS03415	COG0583	DNA-binding transcription factor activity
AMJAP_RS03565	COG0515	serine threonine protein kinase
AMJAP_RS03575	COG0523	cobalamin synthesis protein
AMJAP_RS03590	COG4176	ABC-type proline glycine betaine transport system permease component
AMJAP_RS03595	COG4175	Glycine betaine
AMJAP_RS03595	COG3448	diguanylate cyclase activity
AMJAP_RS03600	COG3739	integral membrane protein
AMJAP_RS03625	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_RS03635	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMJAP_RS03650	COG4628	conserved protein (DUF2132)
AMJAP_RS03660	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AMJAP_RS03700	COG0512	Glutamine amidotransferase of anthranilate synthase
AMJAP_RS03705	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMJAP_RS03710	COG0134	indole-3-glycerol-phosphate synthase activity
AMJAP_RS03715	COG1765	OsmC-like protein
AMJAP_RS03720	COG1335	isochorismatase
AMJAP_RS03725	COG4977	sequence-specific DNA binding
AMJAP_RS03735	COG0360	Binds together with S18 to 16S ribosomal RNA
AMJAP_RS03740	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AMJAP_RS03745	COG0359	binds to the 23S rRNA
AMJAP_RS03750	COG0305	Participates in initiation and elongation during chromosome replication
AMJAP_RS03760	COG2226	methyltransferase
AMJAP_RS03775	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMJAP_RS03785	COG1720	tRNA m6t6A37 methyltransferase activity
AMJAP_RS03795	COG1040	competence protein
AMJAP_RS03805	COG0156	8-amino-7-oxononanoate synthase activity
AMJAP_RS03810	COG0596	Alpha beta hydrolase
AMJAP_RS03815	COG1073	alpha beta
AMJAP_RS03815	COG2226	methyltransferase
AMJAP_RS03820	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AMJAP_RS03850	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMJAP_RS03875	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJAP_RS03875	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_RS03880	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_RS03885	COG3383	formate dehydrogenase (NAD+) activity
AMJAP_RS03895	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJAP_RS03900	COG0251	oxidation-reduction process
AMJAP_RS03905	COG0596	Alpha beta hydrolase
AMJAP_RS03910	COG0545	Peptidyl-prolyl cis-trans isomerase
AMJAP_RS03920	COG1570	exodeoxyribonuclease VII activity
AMJAP_RS03930	COG0519	Catalyzes the synthesis of GMP from XMP
AMJAP_RS03930	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMJAP_RS03935	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMJAP_RS03940	COG2755	lipolytic protein G-D-S-L family
AMJAP_RS03940	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMJAP_RS03950	COG2866	Carboxypeptidase
AMJAP_RS03955	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
AMJAP_RS03980	COG2350	Protein conserved in bacteria
AMJAP_RS03985	COG2917	probably involved in intracellular septation
AMJAP_RS03990	COG0613	PHP domain protein
AMJAP_RS03995	COG0009	L-threonylcarbamoyladenylate synthase
AMJAP_RS04010	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_RS04020	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMJAP_RS04030	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AMJAP_RS04040	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMJAP_RS04045	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMJAP_RS04050	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AMJAP_RS04060	COG0776	regulation of translation
AMJAP_RS04070	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AMJAP_RS04080	COG1555	photosystem II stabilization
AMJAP_RS04090	COG1490	D-aminoacyl-tRNA deacylase activity
AMJAP_RS04100	COG1217	gtp-binding protein TYPA
AMJAP_RS04105	COG0174	glutamine synthetase
AMJAP_RS04115	COG3852	Histidine kinase
AMJAP_RS04120	COG2204	response regulator
AMJAP_RS04125	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AMJAP_RS04130	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AMJAP_RS04135	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AMJAP_RS04140	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMJAP_RS04145	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AMJAP_RS04150	COG4942	peptidase
AMJAP_RS04155	COG0793	Belongs to the peptidase S41A family
AMJAP_RS04170	COG1309	transcriptional regulator
AMJAP_RS04175	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMJAP_RS04180	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMJAP_RS04185	COG0756	dUTP diphosphatase activity
AMJAP_RS04190	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMJAP_RS04195	COG2003	Belongs to the UPF0758 family
AMJAP_RS04200	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AMJAP_RS04205	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AMJAP_RS04210	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AMJAP_RS04225	COG0671	phosphoesterase, PA-phosphatase related
AMJAP_RS04235	COG0351	phosphomethylpyrimidine kinase
AMJAP_RS04240	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
AMJAP_RS04260	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJAP_RS04275	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMJAP_RS04280	COG0095	Lipoate-protein ligase
AMJAP_RS04285	COG0205	6-phosphofructokinase activity
AMJAP_RS04340	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
AMJAP_RS04345	COG3647	Membrane
AMJAP_RS04365	COG0277	FAD linked oxidase domain protein
AMJAP_RS04370	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_RS04380	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AMJAP_RS04385	COG2186	Transcriptional regulator
AMJAP_RS04395	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMJAP_RS04410	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AMJAP_RS04445	COG0438	transferase activity, transferring glycosyl groups
AMJAP_RS04485	COG0175	sulfate reduction
AMJAP_RS04490	COG3273	potassium ion transport
AMJAP_RS04490	COG0471	metal ion transport
AMJAP_RS04500	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMJAP_RS04515	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMJAP_RS04530	COG0166	Belongs to the GPI family
AMJAP_RS04535	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AMJAP_RS04550	COG0489	protein tyrosine kinase activity
AMJAP_RS04565	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMJAP_RS04570	COG0303	'Molybdopterin
AMJAP_RS04575	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AMJAP_RS04580	COG0746	molybdenum cofactor guanylyltransferase activity
AMJAP_RS04590	COG1346	cytolysis
AMJAP_RS04595	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMJAP_RS04600	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AMJAP_RS04605	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AMJAP_RS04610	COG0723	plastoquinol--plastocyanin reductase activity
AMJAP_RS04615	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AMJAP_RS04620	COG2857	Cytochrome c1
AMJAP_RS04625	COG0625	glutathione transferase activity
AMJAP_RS04630	COG2969	positive regulation of protein catabolic process
AMJAP_RS04635	COG2823	Periplasmic or secreted lipoprotein
AMJAP_RS04640	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AMJAP_RS04645	COG0792	nuclease activity
AMJAP_RS04685	COG2192	nodulation
AMJAP_RS04695	COG2001	Belongs to the MraZ family
AMJAP_RS04700	COG0275	rRNA processing
AMJAP_RS04715	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AMJAP_RS04720	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AMJAP_RS04725	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMJAP_RS04730	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AMJAP_RS04735	COG0772	Belongs to the SEDS family
AMJAP_RS04740	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AMJAP_RS04745	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMJAP_RS04750	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMJAP_RS04770	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AMJAP_RS04775	COG0653	protein targeting
AMJAP_RS04785	COG0352	thiamine-phosphate diphosphorylase activity
AMJAP_RS04790	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AMJAP_RS04795	COG0237	dephospho-CoA kinase activity
AMJAP_RS04800	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
AMJAP_RS04815	COG4969	Belongs to the N-Me-Phe pilin family
AMJAP_RS04830	COG3023	N-Acetylmuramoyl-L-alanine amidase
AMJAP_RS04835	COG3725	Membrane protein required for beta-lactamase induction
AMJAP_RS04840	COG3842	ATPase activity
AMJAP_RS04845	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AMJAP_RS04850	COG1840	ABC-type Fe3 transport system, periplasmic component
AMJAP_RS04860	COG0534	Mate efflux family protein
AMJAP_RS04865	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_RS04875	COG3012	SEC-C Motif Domain Protein
AMJAP_RS04880	COG2925	Exonuclease
AMJAP_RS04890	COG1025	Belongs to the peptidase M16 family
AMJAP_RS04900	COG0569	domain protein
AMJAP_RS04915	COG3022	response to hydroperoxide
AMJAP_RS04925	COG0180	Tryptophanyl-tRNA synthetase
AMJAP_RS04935	COG2315	Protein conserved in bacteria
AMJAP_RS04940	COG2837	iron assimilation
AMJAP_RS04950	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMJAP_RS04970	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AMJAP_RS04980	COG0748	coenzyme F420 binding
AMJAP_RS05025	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMJAP_RS05030	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMJAP_RS05035	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMJAP_RS05045	COG4628	conserved protein (DUF2132)
AMJAP_RS05055	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AMJAP_RS05070	COG4660	Part of a membrane complex involved in electron transport
AMJAP_RS05075	COG4659	FMN binding
AMJAP_RS05080	COG4658	electron transport chain
AMJAP_RS05090	COG2878	Part of a membrane complex involved in electron transport
AMJAP_RS05095	COG4657	Part of a membrane complex involved in electron transport
AMJAP_RS05105	COG0175	sulfate reduction
AMJAP_RS05110	COG0730	response to heat
AMJAP_RS05115	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMJAP_RS05125	COG0175	sulfate reduction
AMJAP_RS05150	COG2827	Endonuclease containing a URI domain
AMJAP_RS05160	COG0418	dihydroorotase activity
AMJAP_RS05165	COG0252	asparaginase activity
AMJAP_RS05180	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
AMJAP_RS05190	COG1794	racemase activity, acting on amino acids and derivatives
AMJAP_RS05200	COG1686	Belongs to the peptidase S11 family
AMJAP_RS05210	COG0436	Aminotransferase
AMJAP_RS05215	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMJAP_RS05235	COG1643	Atp-dependent helicase
AMJAP_RS05245	COG1741	Belongs to the pirin family
AMJAP_RS05255	COG0069	glutamate synthase activity
AMJAP_RS05260	COG1741	Belongs to the pirin family
AMJAP_RS05265	COG0583	DNA-binding transcription factor activity
AMJAP_RS05270	COG0435	Glutathione S-transferase
AMJAP_RS05300	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_RS05320	COG1187	pseudouridine synthase activity
AMJAP_RS05340	COG1605	Chorismate mutase
AMJAP_RS05340	COG0077	Prephenate dehydratase
AMJAP_RS05345	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMJAP_RS05385	COG0438	transferase activity, transferring glycosyl groups
AMJAP_RS05395	COG1522	sequence-specific DNA binding
AMJAP_RS05400	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMJAP_RS05405	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMJAP_RS05420	COG0513	Belongs to the DEAD box helicase family
AMJAP_RS05425	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AMJAP_RS05430	COG0513	Belongs to the DEAD box helicase family
AMJAP_RS05435	COG2863	cytochrome
AMJAP_RS05450	COG3901	Regulator of nitric oxide reductase transcription
AMJAP_RS05450	COG0348	domain, Protein
AMJAP_RS05490	COG0488	(ABC) transporter
AMJAP_RS05510	COG2199	diguanylate cyclase activity
AMJAP_RS05520	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJAP_RS05530	COG3577	Aspartyl protease
AMJAP_RS05555	COG3510	cephalosporin hydroxylase
AMJAP_RS05570	COG3706	GGDEF domain
AMJAP_RS05585	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AMJAP_RS05590	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AMJAP_RS05595	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AMJAP_RS05610	COG2983	Belongs to the UPF0260 family
AMJAP_RS05625	COG0793	Belongs to the peptidase S41A family
AMJAP_RS05630	COG0545	Peptidyl-prolyl cis-trans isomerase
AMJAP_RS05635	COG1362	aminopeptidase activity
AMJAP_RS05640	COG1187	pseudouridine synthase activity
AMJAP_RS05645	COG0653	protein targeting
AMJAP_RS05675	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AMJAP_RS05685	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJAP_RS05695	COG3842	ATPase activity
AMJAP_RS05700	COG0557	exoribonuclease II activity
AMJAP_RS05705	COG5001	Diguanylate cyclase
AMJAP_RS05705	COG4251	negative regulation of phosphorylation
AMJAP_RS05705	COG3706	GGDEF domain
AMJAP_RS05705	COG2203	Gaf domain
AMJAP_RS05785	COG1944	ATP diphosphatase activity
AMJAP_RS05820	COG0271	Belongs to the BolA IbaG family
AMJAP_RS05830	COG1132	(ABC) transporter
AMJAP_RS05835	COG3133	Outer membrane lipoprotein
AMJAP_RS05845	COG0514	ATP-dependent DNA helicase (RecQ)
AMJAP_RS05850	COG1238	metal cluster binding
AMJAP_RS05880	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJAP_RS05890	COG0037	tRNA processing
AMJAP_RS05900	COG1024	Enoyl-CoA hydratase
AMJAP_RS05910	COG3258	Cytochrome c
AMJAP_RS05930	COG3258	Cytochrome c
AMJAP_RS05940	COG0737	Belongs to the 5'-nucleotidase family
AMJAP_RS05950	COG3101	peptidyl-lysine hydroxylation
AMJAP_RS05975	COG0023	Translation Initiation Factor
AMJAP_RS05995	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AMJAP_RS06000	COG2954	triphosphatase activity
AMJAP_RS06005	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMJAP_RS06005	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMJAP_RS06015	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMJAP_RS06025	COG2326	polyphosphate kinase activity
AMJAP_RS06055	COG0489	protein tyrosine kinase activity
AMJAP_RS06060	COG0717	Belongs to the dCTP deaminase family
AMJAP_RS06075	COG3300	MHYT domain
AMJAP_RS06075	COG5001	Diguanylate cyclase
AMJAP_RS06085	COG1538	Outer membrane efflux protein
AMJAP_RS06090	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMJAP_RS06095	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJAP_RS06100	COG1309	transcriptional regulator
AMJAP_RS06105	COG0436	Aminotransferase
AMJAP_RS06110	COG0556	nucleotide-excision repair
AMJAP_RS06115	COG4191	Histidine kinase
AMJAP_RS06115	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJAP_RS06130	COG2204	response regulator
AMJAP_RS06160	COG0686	Belongs to the AlaDH PNT family
AMJAP_RS06170	COG2207	Transcriptional regulator
AMJAP_RS06210	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMJAP_RS06215	COG2159	amidohydrolase
AMJAP_RS06220	COG0583	DNA-binding transcription factor activity
AMJAP_RS06230	COG0667	Aldo Keto reductase
AMJAP_RS06265	COG0583	DNA-binding transcription factor activity
AMJAP_RS06290	COG0625	glutathione transferase activity
AMJAP_RS06295	COG0583	DNA-binding transcription factor activity
AMJAP_RS06315	COG2212	antiporter activity
AMJAP_RS06320	COG1863	multisubunit Na H antiporter MnhE subunit
AMJAP_RS06325	COG0651	ATP synthesis coupled electron transport
AMJAP_RS06330	COG1006	Multisubunit Na H antiporter MnhC subunit
AMJAP_RS06335	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMJAP_RS06335	COG2111	Na H antiporter
AMJAP_RS06370	COG0784	Response regulator, receiver
AMJAP_RS06370	COG2205	protein histidine kinase activity
AMJAP_RS06390	COG1234	tRNA 3'-trailer cleavage
AMJAP_RS06400	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
AMJAP_RS06470	COG0697	spore germination
AMJAP_RS06475	COG1522	sequence-specific DNA binding
AMJAP_RS06490	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AMJAP_RS06490	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AMJAP_RS06490	COG0506	proline dehydrogenase activity
AMJAP_RS06505	COG0640	Transcriptional regulator
AMJAP_RS06520	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AMJAP_RS06535	COG2261	transglycosylase associated protein
AMJAP_RS06545	COG4807	Protein conserved in bacteria
AMJAP_RS06565	COG2207	Transcriptional regulator
AMJAP_RS06580	COG3706	GGDEF domain
AMJAP_RS06595	COG1802	Transcriptional regulator
AMJAP_RS06605	COG0579	oxidoreductase
AMJAP_RS06630	COG0251	oxidation-reduction process
AMJAP_RS06635	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJAP_RS06645	COG2962	Rard protein
AMJAP_RS06670	COG0791	NLP P60 protein
AMJAP_RS06685	COG3437	response regulator, receiver
AMJAP_RS06685	COG0784	Response regulator, receiver
AMJAP_RS06695	COG1132	(ABC) transporter
AMJAP_RS06700	COG0390	transport system, permease component
AMJAP_RS06725	COG0714	Associated with various cellular activities
AMJAP_RS06760	COG0784	Response regulator, receiver
AMJAP_RS06760	COG2205	protein histidine kinase activity
AMJAP_RS06785	COG1131	(ABC) transporter
AMJAP_RS06810	COG0745	RESPONSE REGULATOR receiver
AMJAP_RS06815	COG2205	protein histidine kinase activity
AMJAP_RS06820	COG3713	MltA-interacting MipA family protein
AMJAP_RS06875	COG3706	GGDEF domain
AMJAP_RS06885	COG1279	arginine transmembrane transporter activity
AMJAP_RS06890	COG0840	transmembrane signaling receptor activity
AMJAP_RS06900	COG5001	Diguanylate cyclase
AMJAP_RS06925	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AMJAP_RS06940	COG0535	radical SAM domain protein
AMJAP_RS06950	COG2824	Alkylphosphonate utilization operon protein PhnA
AMJAP_RS07015	COG0429	hydrolase of the alpha beta-hydrolase fold
AMJAP_RS07025	COG2258	MOSC domain
AMJAP_RS07055	COG3154	lipid carrier protein
AMJAP_RS07060	COG0826	peptidase U32
AMJAP_RS07065	COG0826	peptidase U32
AMJAP_RS07075	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMJAP_RS07120	COG0714	Associated with various cellular activities
AMJAP_RS07135	COG0697	spore germination
AMJAP_RS07150	COG0307	riboflavin synthase, alpha
AMJAP_RS07155	COG1090	epimerase
AMJAP_RS07165	COG2902	Dehydrogenase
AMJAP_RS07175	COG0167	dihydroorotate dehydrogenase activity
AMJAP_RS07180	COG3130	regulation of translation
AMJAP_RS07185	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMJAP_RS07185	COG0116	Belongs to the methyltransferase superfamily
AMJAP_RS07190	COG0004	ammonium transporteR
AMJAP_RS07200	COG2009	succinate dehydrogenase
AMJAP_RS07205	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AMJAP_RS07210	COG1053	succinate dehydrogenase
AMJAP_RS07215	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AMJAP_RS07230	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMJAP_RS07235	COG0045	succinate-CoA ligase (ADP-forming) activity
AMJAP_RS07270	COG1280	lysine exporter protein (LysE YggA)
AMJAP_RS07280	COG0513	Belongs to the DEAD box helicase family
AMJAP_RS07295	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMJAP_RS07315	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMJAP_RS07320	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AMJAP_RS07330	COG0628	permease
AMJAP_RS07345	COG0564	pseudouridine synthase activity
AMJAP_RS07355	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AMJAP_RS07365	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AMJAP_RS07380	COG1393	Belongs to the ArsC family
AMJAP_RS07385	COG1295	ribonuclease BN
AMJAP_RS07400	COG2329	Antibiotic biosynthesis monooxygenase
AMJAP_RS07410	COG0442	prolyl-tRNA aminoacylation
AMJAP_RS07430	COG0668	transmembrane transport
AMJAP_RS07440	COG1960	acyl-CoA dehydrogenase activity
AMJAP_RS07445	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AMJAP_RS07450	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMJAP_RS07475	COG3474	cytochrome
AMJAP_RS07500	COG4566	intracellular signal transduction
AMJAP_RS07505	COG4191	Histidine kinase
AMJAP_RS07510	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_RS07520	COG4783	chaperone-mediated protein folding
AMJAP_RS07535	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMJAP_RS07540	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJAP_RS07550	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMJAP_RS07555	COG0564	pseudouridine synthase activity
AMJAP_RS07560	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMJAP_RS07565	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMJAP_RS07575	COG0316	Belongs to the HesB IscA family
AMJAP_RS07575	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
AMJAP_RS07580	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AMJAP_RS07595	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMJAP_RS07625	COG4172	Belongs to the ABC transporter superfamily
AMJAP_RS07630	COG4239	(ABC) transporter, permease
AMJAP_RS07635	COG4174	ABC transporter (Permease)
AMJAP_RS07640	COG4166	transmembrane transport
AMJAP_RS07650	COG0741	lytic transglycosylase activity
AMJAP_RS07650	COG1388	LysM domain
AMJAP_RS07655	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJAP_RS07660	COG2226	methyltransferase
AMJAP_RS07665	COG0328	RNA-DNA hybrid ribonuclease activity
AMJAP_RS07670	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMJAP_RS07675	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AMJAP_RS07680	COG2816	NAD+ diphosphatase activity
AMJAP_RS07690	COG0616	signal peptide processing
AMJAP_RS07700	COG1376	ErfK ybiS ycfS ynhG family protein
AMJAP_RS07705	COG1472	Belongs to the glycosyl hydrolase 3 family
AMJAP_RS07710	COG0668	transmembrane transport
AMJAP_RS07725	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMJAP_RS07735	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AMJAP_RS07740	COG1805	sodium ion transport
AMJAP_RS07755	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AMJAP_RS07760	COG2871	sodium ion transport
AMJAP_RS07765	COG1477	protein flavinylation
AMJAP_RS07775	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMJAP_RS07795	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMJAP_RS07800	COG1136	(ABC) transporter
AMJAP_RS07815	COG0811	peptide transport
AMJAP_RS07820	COG0848	biopolymer transport protein
AMJAP_RS07830	COG2835	tetraacyldisaccharide 4'-kinase activity
AMJAP_RS07835	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AMJAP_RS07855	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMJAP_RS07860	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AMJAP_RS07865	COG1530	ribonuclease E activity
AMJAP_RS07900	COG0589	response to stress
AMJAP_RS07905	COG0583	DNA-binding transcription factor activity
AMJAP_RS07910	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AMJAP_RS07930	COG2081	HI0933 family
AMJAP_RS07940	COG3005	denitrification pathway
AMJAP_RS07945	COG0443	Heat shock 70 kDa protein
AMJAP_RS07950	COG0583	DNA-binding transcription factor activity
AMJAP_RS07975	COG1006	Multisubunit Na H antiporter MnhC subunit
AMJAP_RS07980	COG0651	ATP synthesis coupled electron transport
AMJAP_RS07985	COG0651	ATP synthesis coupled electron transport
AMJAP_RS07995	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMJAP_RS07995	COG2111	Na H antiporter
AMJAP_RS08005	COG1944	ATP diphosphatase activity
AMJAP_RS08025	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AMJAP_RS08040	COG0513	Belongs to the DEAD box helicase family
AMJAP_RS08055	COG2066	Belongs to the glutaminase family
AMJAP_RS08075	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AMJAP_RS08095	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMJAP_RS08100	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AMJAP_RS08125	COG0544	peptidyl-prolyl cis-trans isomerase activity
AMJAP_RS08130	COG0740	serine-type endopeptidase activity
AMJAP_RS08135	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AMJAP_RS08140	COG0217	transcriptional regulatory protein
AMJAP_RS08150	COG3706	GGDEF domain
AMJAP_RS08160	COG3791	Glutathione-dependent formaldehyde-activating
AMJAP_RS08210	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AMJAP_RS08215	COG2814	Major facilitator Superfamily
AMJAP_RS08220	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AMJAP_RS08235	COG0463	Glycosyl transferase, family 2
AMJAP_RS08275	COG1451	nucleotide metabolic process
AMJAP_RS08285	COG2050	protein possibly involved in aromatic compounds catabolism
AMJAP_RS08295	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMJAP_RS08300	COG2207	Transcriptional regulator
AMJAP_RS08315	COG0490	domain, Protein
AMJAP_RS08315	COG0471	metal ion transport
AMJAP_RS08320	COG1607	acyl-coa hydrolase
AMJAP_RS08325	COG0583	DNA-binding transcription factor activity
AMJAP_RS08330	COG0247	lactate metabolic process
AMJAP_RS08330	COG0277	FAD linked oxidase domain protein
AMJAP_RS08345	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMJAP_RS08350	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJAP_RS08360	COG0546	phosphoglycolate phosphatase activity
AMJAP_RS08365	COG0616	signal peptide processing
AMJAP_RS08380	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
AMJAP_RS08385	COG0424	maF-like protein
AMJAP_RS08390	COG1399	metal-binding, possibly nucleic acid-binding protein
AMJAP_RS08395	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AMJAP_RS08400	COG0416	fatty acid biosynthetic process
AMJAP_RS08405	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AMJAP_RS08415	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMJAP_RS08420	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMJAP_RS08430	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AMJAP_RS08435	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AMJAP_RS08450	COG0084	hydrolase, TatD family'
AMJAP_RS08460	COG0039	L-malate dehydrogenase activity
AMJAP_RS08465	COG0432	Pfam Uncharacterised protein family UPF0047
AMJAP_RS08475	COG3622	Belongs to the hyi family
AMJAP_RS08480	COG2084	Dehydrogenase
AMJAP_RS08495	COG2923	Belongs to the DsrF TusC family
AMJAP_RS08500	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AMJAP_RS08505	COG0670	Belongs to the BI1 family
AMJAP_RS08510	COG0564	pseudouridine synthase activity
AMJAP_RS08520	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AMJAP_RS08525	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AMJAP_RS08535	COG2084	Dehydrogenase
AMJAP_RS08555	COG0322	excinuclease ABC activity
AMJAP_RS08560	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMJAP_RS08585	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AMJAP_RS08600	COG2197	response regulator
AMJAP_RS08665	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_RS08675	COG4191	Histidine kinase
AMJAP_RS08690	COG3360	Dodecin
AMJAP_RS08695	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMJAP_RS08700	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMJAP_RS08710	COG0750	zinc metalloprotease
AMJAP_RS08725	COG0300	oxidoreductase activity
AMJAP_RS08740	COG0753	catalase activity
AMJAP_RS08755	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
AMJAP_RS08760	COG0646	methionine synthase
AMJAP_RS08760	COG1410	methionine synthase
AMJAP_RS08775	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMJAP_RS08800	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMJAP_RS08805	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AMJAP_RS08810	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AMJAP_RS08815	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AMJAP_RS08820	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AMJAP_RS08825	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AMJAP_RS08830	COG1674	ftsk spoiiie
AMJAP_RS08835	COG0492	ferredoxin-NADP+ reductase activity
AMJAP_RS08840	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AMJAP_RS08845	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
AMJAP_RS08850	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AMJAP_RS08855	COG0542	response to heat
AMJAP_RS08860	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AMJAP_RS08865	COG1278	Cold shock
AMJAP_RS08870	COG1187	pseudouridine synthase activity
AMJAP_RS08875	COG0314	molybdopterin synthase activity
AMJAP_RS08885	COG0482	sulfurtransferase activity
AMJAP_RS08890	COG2915	High frequency lysogenization protein hflD homolog
AMJAP_RS08900	COG2267	carboxylic ester hydrolase activity
AMJAP_RS08905	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
AMJAP_RS08910	COG2850	peptidyl-arginine hydroxylation
AMJAP_RS08935	COG0477	Major facilitator Superfamily
AMJAP_RS08940	COG3047	cAMP biosynthetic process
AMJAP_RS08950	COG1024	Enoyl-CoA hydratase
AMJAP_RS08955	COG1132	(ABC) transporter
AMJAP_RS08975	COG0215	cysteine-tRNA ligase activity
AMJAP_RS08980	COG1013	pyruvate-flavodoxin oxidoreductase activity
AMJAP_RS08980	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AMJAP_RS08980	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
AMJAP_RS08980	COG0674	pyruvate-flavodoxin oxidoreductase activity
AMJAP_RS08990	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMJAP_RS08995	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMJAP_RS09000	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMJAP_RS09005	COG1942	4-Oxalocrotonate Tautomerase
AMJAP_RS09025	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMJAP_RS09025	COG4651	solute:proton antiporter activity
AMJAP_RS09035	COG0583	DNA-binding transcription factor activity
AMJAP_RS09040	COG0604	alcohol dehydrogenase
AMJAP_RS09055	COG2828	Protein conserved in bacteria
AMJAP_RS09060	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AMJAP_RS09065	COG0372	Belongs to the citrate synthase family
AMJAP_RS09070	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
AMJAP_RS09075	COG1802	Transcriptional regulator
AMJAP_RS09085	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AMJAP_RS09120	COG3148	PFAM DTW domain containing protein
AMJAP_RS09125	COG5001	Diguanylate cyclase
AMJAP_RS09125	COG1716	ATPase activity
AMJAP_RS09135	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AMJAP_RS09155	COG2814	Major facilitator Superfamily
AMJAP_RS09165	COG0583	DNA-binding transcription factor activity
AMJAP_RS09170	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AMJAP_RS09175	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AMJAP_RS09195	COG4232	protein-disulfide reductase activity
AMJAP_RS09210	COG1252	NADH dehydrogenase
AMJAP_RS09220	COG0840	transmembrane signaling receptor activity
AMJAP_RS09255	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AMJAP_RS09265	COG3447	MASE1 domain protein
AMJAP_RS09265	COG5002	protein histidine kinase activity
AMJAP_RS09265	COG5001	Diguanylate cyclase
AMJAP_RS09270	COG1960	acyl-CoA dehydrogenase activity
AMJAP_RS09275	COG2207	Transcriptional regulator
AMJAP_RS09280	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMJAP_RS09290	COG0071	Belongs to the small heat shock protein (HSP20) family
AMJAP_RS09295	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
AMJAP_RS09310	COG1355	regulation of microtubule-based process
AMJAP_RS09335	COG1286	toxin biosynthetic process
AMJAP_RS09345	COG0285	dihydrofolate synthase activity
AMJAP_RS09355	COG0159	tryptophan synthase activity
AMJAP_RS09365	COG0135	phosphoribosylanthranilate isomerase activity
AMJAP_RS09380	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AMJAP_RS09385	COG0473	3-isopropylmalate dehydrogenase activity
AMJAP_RS09390	COG0066	3-isopropylmalate dehydratase activity
AMJAP_RS09395	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AMJAP_RS09410	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMJAP_RS09415	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
AMJAP_RS09445	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
AMJAP_RS09455	COG2814	Major facilitator Superfamily
AMJAP_RS09460	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
AMJAP_RS09465	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AMJAP_RS09480	COG0302	gtp cyclohydrolase
AMJAP_RS09510	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AMJAP_RS09515	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AMJAP_RS09520	COG0513	Belongs to the DEAD box helicase family
AMJAP_RS09525	COG1199	ATP-dependent helicase activity
AMJAP_RS09530	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMJAP_RS09570	COG0589	response to stress
AMJAP_RS09575	COG0488	(ABC) transporter
AMJAP_RS09580	COG0741	lytic transglycosylase activity
AMJAP_RS09595	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMJAP_RS09615	COG3287	FIST C domain
AMJAP_RS09615	COG2200	EAL domain
AMJAP_RS09615	COG2199	diguanylate cyclase activity
AMJAP_RS09625	COG0425	Belongs to the sulfur carrier protein TusA family
AMJAP_RS09635	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
AMJAP_RS09645	COG3278	Belongs to the heme-copper respiratory oxidase family
AMJAP_RS09660	COG2010	Cytochrome c
AMJAP_RS09675	COG2217	Heavy metal translocating P-type atpase
AMJAP_RS09695	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJAP_RS09700	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AMJAP_RS09715	COG2974	May be involved in recombination
AMJAP_RS09725	COG0602	queuosine metabolic process
AMJAP_RS09730	COG0385	Bile acid
AMJAP_RS09735	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AMJAP_RS09740	COG1739	Uncharacterized protein family UPF0029
AMJAP_RS09745	COG0659	secondary active sulfate transmembrane transporter activity
AMJAP_RS09750	COG3706	GGDEF domain
AMJAP_RS09760	COG0708	Exodeoxyribonuclease III
AMJAP_RS09770	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMJAP_RS09800	COG0640	Transcriptional regulator
AMJAP_RS09830	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMJAP_RS09840	COG0133	tryptophan synthase activity
AMJAP_RS09870	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AMJAP_RS09895	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AMJAP_RS09900	COG1074	ATP-dependent DNA helicase activity
AMJAP_RS09905	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AMJAP_RS09915	COG2814	Major facilitator Superfamily
AMJAP_RS09930	COG2030	dehydratase
AMJAP_RS09935	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AMJAP_RS09940	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AMJAP_RS09950	COG2885	chlorophyll binding
AMJAP_RS09955	COG0823	Involved in the tonB-independent uptake of proteins
AMJAP_RS09980	COG2255	four-way junction helicase activity
AMJAP_RS09985	COG0632	four-way junction helicase activity
AMJAP_RS09995	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AMJAP_RS10000	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AMJAP_RS10055	COG0308	aminopeptidase N
AMJAP_RS10065	COG3139	Protein of unknown function (DUF1315)
AMJAP_RS10075	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMJAP_RS10080	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AMJAP_RS10150	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJAP_RS10155	COG0436	Aminotransferase
AMJAP_RS10165	COG1639	'signal transduction protein
AMJAP_RS10175	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMJAP_RS10180	COG0501	Belongs to the peptidase M48B family
AMJAP_RS10250	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMJAP_RS10285	COG0019	diaminopimelate decarboxylase activity
AMJAP_RS10300	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMJAP_RS10310	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
AMJAP_RS10325	COG1846	Transcriptional regulator
AMJAP_RS10330	COG3384	dioxygenase
AMJAP_RS10340	COG2814	Major facilitator Superfamily
AMJAP_RS10355	COG3813	Protein conserved in bacteria
AMJAP_RS10365	COG0668	transmembrane transport
AMJAP_RS10400	COG3971	2-oxopent-4-enoate hydratase activity
AMJAP_RS10410	COG0456	acetyltransferase
AMJAP_RS10425	COG0326	Molecular chaperone. Has ATPase activity
AMJAP_RS10445	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMJAP_RS10465	COG0579	oxidoreductase
AMJAP_RS10475	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMJAP_RS10480	COG1242	4 iron, 4 sulfur cluster binding
AMJAP_RS10485	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMJAP_RS10500	COG1024	Enoyl-CoA hydratase
AMJAP_RS10505	COG1024	Enoyl-CoA hydratase
AMJAP_RS10510	COG1960	acyl-CoA dehydrogenase activity
AMJAP_RS10525	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMJAP_RS10540	COG1522	sequence-specific DNA binding
AMJAP_RS10545	COG0531	amino acid
AMJAP_RS10560	COG1902	pentaerythritol trinitrate reductase activity
AMJAP_RS10560	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJAP_RS10565	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AMJAP_RS10575	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
AMJAP_RS10580	COG0183	Belongs to the thiolase family
AMJAP_RS10615	COG1960	acyl-CoA dehydrogenase activity
AMJAP_RS10620	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AMJAP_RS10625	COG1024	Enoyl-CoA hydratase
AMJAP_RS10630	COG4770	biotin carboxylase activity
AMJAP_RS10645	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_RS10650	COG2226	methyltransferase
AMJAP_RS10655	COG0513	Belongs to the DEAD box helicase family
AMJAP_RS10660	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AMJAP_RS10670	COG0730	response to heat
AMJAP_RS10675	COG0659	secondary active sulfate transmembrane transporter activity
AMJAP_RS10680	COG0037	tRNA processing
AMJAP_RS10680	COG0590	tRNA wobble adenosine to inosine editing
AMJAP_RS10685	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMJAP_RS10710	COG0484	heat shock protein binding
AMJAP_RS10720	COG0179	Fumarylacetoacetate (FAA) hydrolase
AMJAP_RS10730	COG2205	protein histidine kinase activity
AMJAP_RS10740	COG2204	response regulator
AMJAP_RS10765	COG0625	glutathione transferase activity
AMJAP_RS10770	COG3530	Putative quorum-sensing-regulated virulence factor
AMJAP_RS10780	COG1444	tRNA N-acetyltransferase activity
AMJAP_RS10805	COG0625	glutathione transferase activity
AMJAP_RS10825	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AMJAP_RS10835	COG4336	lyase activity
AMJAP_RS10845	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AMJAP_RS10850	COG1984	allophanate hydrolase subunit 2
AMJAP_RS10860	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMJAP_RS10865	COG1522	sequence-specific DNA binding
AMJAP_RS10870	COG0583	DNA-binding transcription factor activity
AMJAP_RS10890	COG1902	pentaerythritol trinitrate reductase activity
AMJAP_RS10905	COG2226	methyltransferase
AMJAP_RS10915	COG0514	ATP-dependent DNA helicase (RecQ)
AMJAP_RS10920	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMJAP_RS10940	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_RS10950	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_RS10960	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJAP_RS10965	COG1757	Na H antiporter
AMJAP_RS10970	COG0697	spore germination
AMJAP_RS10980	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_RS10990	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJAP_RS10990	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_RS11000	COG1793	dna ligase
AMJAP_RS11035	COG0435	Glutathione S-transferase
AMJAP_RS11070	COG0583	DNA-binding transcription factor activity
AMJAP_RS11075	COG0519	Catalyzes the synthesis of GMP from XMP
AMJAP_RS11075	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMJAP_RS11080	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMJAP_RS11080	COG0519	Catalyzes the synthesis of GMP from XMP
AMJAP_RS11085	COG1177	transmembrane transport
AMJAP_RS11090	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJAP_RS11095	COG3842	ATPase activity
AMJAP_RS11100	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AMJAP_RS11105	COG0174	glutamine synthetase
AMJAP_RS11130	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_RS11140	COG1280	lysine exporter protein (LysE YggA)
AMJAP_RS11160	COG0010	Belongs to the arginase family
AMJAP_RS11195	COG2197	response regulator
AMJAP_RS11215	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AMJAP_RS11225	COG3272	Protein of unknown function (DUF1722)
AMJAP_RS11230	COG0415	Belongs to the DNA photolyase family
AMJAP_RS11235	COG3409	Peptidoglycan-binding domain 1 protein
AMJAP_RS11235	COG3267	Type II secretory pathway component ExeA
AMJAP_RS11250	COG0492	ferredoxin-NADP+ reductase activity
AMJAP_RS11285	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMJAP_RS11290	COG1459	type II secretion system
AMJAP_RS11320	COG4191	Histidine kinase
AMJAP_RS11340	COG1999	signal sequence binding
AMJAP_RS11375	COG1404	Belongs to the peptidase S8 family
AMJAP_RS11395	COG1450	Type ii and iii secretion system protein
AMJAP_RS11405	COG3806	Anti-sigma factor
AMJAP_RS11410	COG1595	DNA-templated transcription, initiation
AMJAP_RS11415	COG0493	'glutamate synthase
AMJAP_RS11425	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMJAP_RS11465	COG0625	glutathione transferase activity
AMJAP_RS11480	COG0583	DNA-binding transcription factor activity
AMJAP_RS11490	COG3327	negative regulation of DNA-templated transcription, initiation
AMJAP_RS11500	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_RS11505	COG1024	Enoyl-CoA hydratase
AMJAP_RS11510	COG1024	Enoyl-CoA hydratase
AMJAP_RS11515	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMJAP_RS11520	COG2050	protein possibly involved in aromatic compounds catabolism
AMJAP_RS11525	COG0183	Belongs to the thiolase family
AMJAP_RS11535	COG3396	Phenylacetate-CoA oxygenase
AMJAP_RS11540	COG3460	Phenylacetate-CoA oxygenase
AMJAP_RS11545	COG3396	Phenylacetate-CoA oxygenase
AMJAP_RS11550	COG2151	metal-sulfur cluster biosynthetic enzyme
AMJAP_RS11555	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMJAP_RS11560	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_RS11560	COG2030	dehydratase
AMJAP_RS11565	COG3106	COG3106 Predicted ATPase
AMJAP_RS11605	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AMJAP_RS11630	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMJAP_RS11630	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
AMJAP_RS11635	COG2201	protein-glutamate methylesterase activity
AMJAP_RS11640	COG1116	anion transmembrane transporter activity
AMJAP_RS11640	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMJAP_RS11645	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMJAP_RS11650	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMJAP_RS11655	COG1116	anion transmembrane transporter activity
AMJAP_RS11660	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMJAP_RS11665	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMJAP_RS11670	COG2146	nitrite reductase [NAD(P)H] activity
AMJAP_RS11675	COG0243	molybdopterin cofactor binding
AMJAP_RS11680	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AMJAP_RS11700	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AMJAP_RS11705	COG2853	Lipoprotein
AMJAP_RS11715	COG1643	Atp-dependent helicase
AMJAP_RS11720	COG0121	glutamine amidotransferase
AMJAP_RS11730	COG0739	heme binding
AMJAP_RS11740	COG0679	Auxin Efflux Carrier
AMJAP_RS11745	COG0183	Belongs to the thiolase family
AMJAP_RS11750	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AMJAP_RS11750	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AMJAP_RS11750	COG0506	proline dehydrogenase activity
AMJAP_RS11755	COG1611	Belongs to the LOG family
AMJAP_RS11765	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AMJAP_RS11770	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AMJAP_RS11780	COG0668	transmembrane transport
AMJAP_RS11785	COG1061	Type III restriction enzyme res subunit
AMJAP_RS11815	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AMJAP_RS11845	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMJAP_RS11855	COG1280	lysine exporter protein (LysE YggA)
AMJAP_RS11860	COG3901	Regulator of nitric oxide reductase transcription
AMJAP_RS11860	COG0348	domain, Protein
AMJAP_RS11875	COG3038	cytochrome b561
AMJAP_RS11880	COG2353	YceI-like domain
AMJAP_RS11900	COG3122	Protein conserved in bacteria
AMJAP_RS11905	COG1278	Cold shock
AMJAP_RS11920	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMJAP_RS11920	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMJAP_RS11925	COG0509	glycine decarboxylation via glycine cleavage system
AMJAP_RS11930	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMJAP_RS11935	COG1760	l-serine dehydratase
AMJAP_RS11945	COG1115	amino acid carrier protein
AMJAP_RS11950	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMJAP_RS11955	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AMJAP_RS11960	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AMJAP_RS11975	COG1917	Cupin 2, conserved barrel domain protein
AMJAP_RS11990	COG1846	Transcriptional regulator
AMJAP_RS12005	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJAP_RS12015	COG0583	DNA-binding transcription factor activity
AMJAP_RS12020	COG3048	D-serine ammonia-lyase activity
AMJAP_RS12025	COG1115	amino acid carrier protein
AMJAP_RS12030	COG2267	carboxylic ester hydrolase activity
AMJAP_RS12040	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMJAP_RS12045	COG1917	Cupin 2, conserved barrel domain protein
AMJAP_RS12045	COG1396	sequence-specific DNA binding
AMJAP_RS12055	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AMJAP_RS12060	COG1960	acyl-CoA dehydrogenase activity
AMJAP_RS12065	COG2832	Protein of unknown function (DUF454)
AMJAP_RS12080	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AMJAP_RS12115	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_RS12120	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJAP_RS12120	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_RS12130	COG0583	DNA-binding transcription factor activity
AMJAP_RS12140	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
AMJAP_RS12145	COG0830	nickel cation binding
AMJAP_RS12150	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
AMJAP_RS12155	COG0804	urea catabolic process
AMJAP_RS12160	COG0832	Belongs to the urease beta subunit family
AMJAP_RS12165	COG0831	urea catabolic process
AMJAP_RS12170	COG0829	nickel cation binding
AMJAP_RS12230	COG0745	RESPONSE REGULATOR receiver
AMJAP_RS12235	COG2205	protein histidine kinase activity
AMJAP_RS12235	COG0784	Response regulator, receiver
AMJAP_RS12245	COG0583	DNA-binding transcription factor activity
AMJAP_RS12250	COG0154	amidase activity
AMJAP_RS12290	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_RS12305	COG0583	DNA-binding transcription factor activity
AMJAP_RS12325	COG3383	formate dehydrogenase (NAD+) activity
AMJAP_RS12330	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AMJAP_RS12360	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_RS12360	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJAP_RS12370	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_RS12395	COG1063	alcohol dehydrogenase
AMJAP_RS12405	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
AMJAP_RS12410	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMJAP_RS12410	COG1017	nitric oxide dioxygenase activity
AMJAP_RS12420	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AMJAP_RS12430	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMJAP_RS12440	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
AMJAP_RS12445	COG2181	nitrate reductase activity
AMJAP_RS12445	COG0247	lactate metabolic process
AMJAP_RS12450	COG1902	pentaerythritol trinitrate reductase activity
AMJAP_RS12450	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJAP_RS12530	COG1760	l-serine dehydratase
AMJAP_RS12545	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJAP_RS12545	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMJAP_RS12560	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMJAP_RS12590	COG1469	GTP cyclohydrolase I activity
AMJAP_RS12595	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AMJAP_RS12600	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AMJAP_RS12620	COG0583	DNA-binding transcription factor activity
AMJAP_RS12630	COG3132	Protein of unknown function, DUF480
AMJAP_RS12635	COG2258	MOSC domain
AMJAP_RS12640	COG3284	Transcriptional regulator
AMJAP_RS12675	COG0644	oxidoreductase
AMJAP_RS12680	COG1404	Belongs to the peptidase S8 family
AMJAP_RS12685	COG1132	(ABC) transporter
AMJAP_RS12730	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
AMJAP_RS12735	COG1278	Cold shock
AMJAP_RS12750	COG0513	Belongs to the DEAD box helicase family
AMJAP_RS12755	COG2223	nitrite transmembrane transporter activity
AMJAP_RS12765	COG3850	Histidine kinase
AMJAP_RS12770	COG2197	response regulator
AMJAP_RS12775	COG2223	nitrite transmembrane transporter activity
AMJAP_RS12780	COG0515	serine threonine protein kinase
AMJAP_RS12780	COG2815	serine threonine protein kinase
AMJAP_RS12805	COG0746	molybdenum cofactor guanylyltransferase activity
AMJAP_RS12810	COG0303	'Molybdopterin
AMJAP_RS12815	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMJAP_RS12820	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJAP_RS12825	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMJAP_RS12830	COG0288	reversible hydration of carbon dioxide
AMJAP_RS12840	COG2181	nitrate reductase activity
AMJAP_RS12845	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
AMJAP_RS12850	COG1140	nitrate reductase beta subunit
AMJAP_RS12855	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
AMJAP_RS12885	COG0583	DNA-binding transcription factor activity
AMJAP_RS12900	COG0154	amidase activity
AMJAP_RS12915	COG0488	(ABC) transporter
AMJAP_RS12970	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AMJAP_RS12975	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AMJAP_RS12980	COG1119	ATPase activity
AMJAP_RS12985	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJAP_RS13005	COG1192	Involved in chromosome partitioning
AMJAP_RS13020	COG1960	acyl-CoA dehydrogenase activity
AMJAP_RS13045	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_RS13055	COG0745	RESPONSE REGULATOR receiver
AMJAP_RS13065	COG0842	Transport permease protein
AMJAP_RS13070	COG1131	(ABC) transporter
AMJAP_RS13085	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMJAP_RS13090	COG3039	Transposase
AMJAP_RS13095	COG0589	response to stress
AMJAP_RS13105	COG4447	cellulose binding
AMJAP_RS13130	COG0277	FAD linked oxidase domain protein
AMJAP_RS13135	COG4221	oxidoreductase activity
AMJAP_RS13155	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_RS13165	COG1741	Belongs to the pirin family
AMJAP_RS13175	COG0778	Nitroreductase
AMJAP_RS13180	COG1024	Enoyl-CoA hydratase
AMJAP_RS13180	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMJAP_RS13185	COG1024	Enoyl-CoA hydratase
AMJAP_RS13190	COG0183	Belongs to the thiolase family
AMJAP_RS13225	COG1322	Protein conserved in bacteria
AMJAP_RS13280	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMJAP_RS13280	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMJAP_RS13290	COG0625	glutathione transferase activity
AMJAP_RS13300	COG0583	DNA-binding transcription factor activity
AMJAP_RS13315	COG1741	Belongs to the pirin family
AMJAP_RS13320	COG1335	isochorismatase
AMJAP_RS13325	COG1162	GTPase activity
AMJAP_RS13340	COG0513	Belongs to the DEAD box helicase family
AMJAP_RS13355	COG0583	DNA-binding transcription factor activity
AMJAP_RS13360	COG0625	glutathione transferase activity
AMJAP_RS13370	COG0419	ATPase involved in DNA repair
AMJAP_RS13375	COG0420	3'-5' exonuclease activity
AMJAP_RS13380	COG2860	membrane
AMJAP_RS13400	COG3384	dioxygenase
AMJAP_RS13420	COG0739	heme binding
AMJAP_RS13440	COG3038	cytochrome b561
AMJAP_RS13450	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMJAP_RS13455	COG0456	acetyltransferase
AMJAP_RS13460	COG0778	Nitroreductase
AMJAP_RS13470	COG0842	Transport permease protein
AMJAP_RS13475	COG1131	(ABC) transporter
AMJAP_RS13525	COG2391	methyltransferase activity
AMJAP_RS13530	COG1522	sequence-specific DNA binding
AMJAP_RS13535	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
AMJAP_RS13540	COG2962	Rard protein
AMJAP_RS13555	COG0776	regulation of translation
AMJAP_RS13560	COG0072	phenylalanine-tRNA ligase activity
AMJAP_RS13565	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AMJAP_RS13570	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AMJAP_RS13575	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AMJAP_RS13580	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMJAP_RS13585	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AMJAP_RS13595	COG0247	lactate metabolic process
AMJAP_RS13600	COG1139	Iron-sulfur cluster binding protein
AMJAP_RS13610	COG1858	cytochrome C peroxidase
AMJAP_RS13630	COG0417	DNA replication proofreading
AMJAP_RS13645	COG0083	homoserine kinase activity
AMJAP_RS13650	COG3425	synthase
AMJAP_RS13655	COG1304	FMN binding
AMJAP_RS13675	COG0137	argininosuccinate synthase activity
AMJAP_RS13685	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMJAP_RS13690	COG0450	alkyl hydroperoxide reductase
AMJAP_RS13695	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMJAP_RS13700	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMJAP_RS13705	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AMJAP_RS13710	COG0583	DNA-binding transcription factor activity
AMJAP_RS13720	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMJAP_RS13725	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
AMJAP_RS13770	COG0617	tRNA 3'-terminal CCA addition
AMJAP_RS13770	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
AMJAP_RS13770	COG0517	IMP dehydrogenase activity
AMJAP_RS13775	COG0788	formyltetrahydrofolate deformylase activity
AMJAP_RS13780	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
AMJAP_RS13815	COG0716	FMN binding
AMJAP_RS13830	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AMJAP_RS13830	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AMJAP_RS13835	COG1575	Belongs to the MenA family. Type 1 subfamily
AMJAP_RS13840	COG0826	peptidase U32
AMJAP_RS13850	COG0625	glutathione transferase activity
AMJAP_RS13860	COG0459	protein refolding
AMJAP_RS13870	COG3030	protein affecting phage T7 exclusion by the F plasmid
AMJAP_RS13875	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_RS13880	COG2211	Major facilitator Superfamily
AMJAP_RS13885	COG1666	GTP binding
AMJAP_RS13900	COG4206	TonB-dependent receptor
AMJAP_RS13905	COG2096	Adenosyltransferase
AMJAP_RS13915	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AMJAP_RS13930	COG0604	alcohol dehydrogenase
AMJAP_RS13935	COG2186	Transcriptional regulator
AMJAP_RS13950	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMJAP_RS13955	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AMJAP_RS13960	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AMJAP_RS13965	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AMJAP_RS13985	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMJAP_RS13990	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMJAP_RS13995	COG1127	ABC transporter
AMJAP_RS14020	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AMJAP_RS14025	COG1137	ATPase activity
AMJAP_RS14030	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AMJAP_RS14045	COG1660	Displays ATPase and GTPase activities
AMJAP_RS14050	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMJAP_RS14055	COG2239	Acts as a magnesium transporter
AMJAP_RS14070	COG1530	ribonuclease E activity
AMJAP_RS14075	COG0424	maF-like protein
AMJAP_RS14080	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
AMJAP_RS14085	COG1792	Involved in formation and maintenance of cell shape
AMJAP_RS14090	COG1077	Cell shape determining protein MreB Mrl
AMJAP_RS14095	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AMJAP_RS14100	COG0154	amidase activity
AMJAP_RS14105	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AMJAP_RS14110	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJAP_RS14115	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJAP_RS14115	COG1902	pentaerythritol trinitrate reductase activity
AMJAP_RS14125	COG3384	dioxygenase
AMJAP_RS14170	COG2900	Belongs to the SlyX family
AMJAP_RS14175	COG0742	ribosomal rna small subunit methyltransferase
AMJAP_RS14180	COG1968	undecaprenyl-diphosphatase activity
AMJAP_RS14195	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMJAP_RS14200	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
AMJAP_RS14205	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AMJAP_RS14210	COG2354	Protein conserved in bacteria
AMJAP_RS14220	COG0778	Nitroreductase
AMJAP_RS14250	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMJAP_RS14255	COG2233	PERMEase
AMJAP_RS14260	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AMJAP_RS14275	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AMJAP_RS14280	COG0511	ligase activity, forming carbon-carbon bonds
AMJAP_RS14290	COG2264	protein methyltransferase activity
AMJAP_RS14310	COG0138	bifunctional purine biosynthesis protein purh
AMJAP_RS14315	COG0151	Belongs to the GarS family
AMJAP_RS14335	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AMJAP_RS14350	COG2766	serine protein kinase
AMJAP_RS14355	COG2718	Belongs to the UPF0229 family
AMJAP_RS14360	COG2719	SpoVR family
AMJAP_RS14365	COG0537	adenosine 5'-monophosphoramidase activity
AMJAP_RS14380	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AMJAP_RS14415	COG2824	Alkylphosphonate utilization operon protein PhnA
AMJAP_RS14430	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AMJAP_RS14435	COG0563	adenylate kinase activity
AMJAP_RS14440	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AMJAP_RS14450	COG3956	TIGRFAM MazG family protein
AMJAP_RS14455	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMJAP_RS14470	COG0736	holo-[acyl-carrier-protein] synthase activity
AMJAP_RS14475	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AMJAP_RS14480	COG1381	Involved in DNA repair and RecF pathway recombination
AMJAP_RS14485	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AMJAP_RS14490	COG0571	ribonuclease III activity
AMJAP_RS14505	COG0481	GTPase activity
AMJAP_RS14510	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMJAP_RS14570	COG1160	GTP binding
AMJAP_RS14580	COG2976	Protein conserved in bacteria
AMJAP_RS14585	COG0124	histidyl-tRNA synthetase
AMJAP_RS14600	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AMJAP_RS14605	COG0105	UTP biosynthetic process
AMJAP_RS14620	COG0443	Heat shock 70 kDa protein
AMJAP_RS14625	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AMJAP_RS14630	COG0316	Belongs to the HesB IscA family
AMJAP_RS14635	COG0822	iron-sulfur transferase activity
AMJAP_RS14640	COG1104	cysteine desulfurase activity
AMJAP_RS14665	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
AMJAP_RS14675	COG0330	HflC and HflK could
AMJAP_RS14680	COG0330	HflC and HflK could
AMJAP_RS14685	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AMJAP_RS14690	COG1923	regulation of RNA biosynthetic process
AMJAP_RS14695	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMJAP_RS14700	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AMJAP_RS14705	COG0860	N-Acetylmuramoyl-L-alanine amidase
AMJAP_RS14710	COG0802	atpase or kinase
AMJAP_RS14715	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMJAP_RS14715	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AMJAP_RS14725	COG5002	protein histidine kinase activity
AMJAP_RS14725	COG5001	Diguanylate cyclase
AMJAP_RS14730	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AMJAP_RS14735	COG1162	GTPase activity
AMJAP_RS14750	COG0688	phosphatidylethanolamine metabolic process
AMJAP_RS14755	COG0354	folic acid binding
AMJAP_RS14760	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMJAP_RS14770	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AMJAP_RS14780	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AMJAP_RS14795	COG0716	FMN binding
AMJAP_RS14815	COG2391	methyltransferase activity
AMJAP_RS14825	COG0795	lipopolysaccharide-transporting ATPase activity
AMJAP_RS14830	COG0795	lipopolysaccharide-transporting ATPase activity
AMJAP_RS14850	COG0525	valine-tRNA ligase activity
AMJAP_RS14890	COG3300	MHYT domain
AMJAP_RS14890	COG5001	Diguanylate cyclase
AMJAP_RS14895	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMJAP_RS14900	COG0348	domain, Protein
AMJAP_RS14915	COG0330	HflC and HflK could
AMJAP_RS14925	COG1309	transcriptional regulator
AMJAP_RS14955	COG1047	Peptidyl-prolyl cis-trans
AMJAP_RS14960	COG0400	carboxylic ester hydrolase activity
AMJAP_RS14965	COG0259	pyridoxamine-phosphate oxidase activity
AMJAP_RS14970	COG3001	Fructosamine kinase
AMJAP_RS14975	COG2995	paraquat-inducible protein a
AMJAP_RS14980	COG2995	paraquat-inducible protein a
AMJAP_RS14985	COG3008	intermembrane lipid transfer
AMJAP_RS15000	COG0572	uridine kinase
AMJAP_RS15010	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJAP_RS15025	COG0436	Aminotransferase
AMJAP_RS15030	COG1393	Belongs to the ArsC family
AMJAP_RS15040	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMJAP_RS15045	COG2226	methyltransferase
AMJAP_RS15065	COG0583	DNA-binding transcription factor activity
AMJAP_RS15070	COG2855	membrane
AMJAP_RS15130	COG1854	S-ribosylhomocysteine lyase activity
AMJAP_RS15140	COG3152	Membrane
AMJAP_RS15160	COG0709	Synthesizes selenophosphate from selenide and ATP
AMJAP_RS15170	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJAP_RS15170	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJAP_RS15185	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
AMJAP_RS15190	COG0183	Belongs to the thiolase family
AMJAP_RS15200	COG0204	Acyl-transferase
AMJAP_RS15205	COG1024	Enoyl-CoA hydratase
AMJAP_RS15215	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_RS15225	COG1960	acyl-CoA dehydrogenase activity
AMJAP_RS15305	COG0251	oxidation-reduction process
AMJAP_RS15310	COG1832	CoA-binding protein
AMJAP_RS15315	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AMJAP_RS15320	COG2890	protein-(glutamine-N5) methyltransferase activity
AMJAP_RS15325	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AMJAP_RS15330	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AMJAP_RS15350	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMJAP_RS15355	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AMJAP_RS15360	COG0193	aminoacyl-tRNA hydrolase activity
AMJAP_RS15365	COG0012	GTP binding
AMJAP_RS15425	COG3830	Belongs to the UPF0237 family
AMJAP_RS15425	COG0560	Phosphoserine phosphatase
AMJAP_RS15430	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJAP_RS15435	COG0653	protein targeting
AMJAP_RS15460	COG1538	Outer membrane efflux protein
AMJAP_RS15465	COG0557	exoribonuclease II activity
AMJAP_RS15480	COG1862	Preprotein translocase
AMJAP_RS15485	COG0343	queuine tRNA-ribosyltransferase activity
AMJAP_RS15490	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AMJAP_RS15505	COG1054	Belongs to the UPF0176 family
AMJAP_RS15510	COG0745	RESPONSE REGULATOR receiver
AMJAP_RS15515	COG5002	protein histidine kinase activity
AMJAP_RS15520	COG2304	oxidoreductase activity
AMJAP_RS15525	COG0583	DNA-binding transcription factor activity
AMJAP_RS15570	COG3220	belongs to the UPF0276 family
AMJAP_RS15580	COG0625	glutathione transferase activity
AMJAP_RS15585	COG0625	glutathione transferase activity
AMJAP_RS15590	COG2358	TRAP transporter, solute receptor (TAXI family
AMJAP_RS15610	COG1024	Enoyl-CoA hydratase
AMJAP_RS15625	COG0583	DNA-binding transcription factor activity
AMJAP_RS15635	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJAP_RS15705	COG3384	dioxygenase
AMJAP_RS15710	COG0435	Glutathione S-transferase
AMJAP_RS15715	COG0583	DNA-binding transcription factor activity
AMJAP_RS15770	COG0583	DNA-binding transcription factor activity
AMJAP_RS15785	COG1132	(ABC) transporter
AMJAP_RS15845	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AMJAP_RS15850	COG3639	organic phosphonate transmembrane transporter activity
AMJAP_RS15855	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
AMJAP_RS15855	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AMJAP_RS15860	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
AMJAP_RS15870	COG1280	lysine exporter protein (LysE YggA)
AMJAP_RS15875	COG2813	Specifically methylates the guanine in position
AMJAP_RS15880	COG4771	TonB-dependent receptor
AMJAP_RS15890	COG2205	protein histidine kinase activity
AMJAP_RS15890	COG0784	Response regulator, receiver
AMJAP_RS15890	COG5002	protein histidine kinase activity
AMJAP_RS15930	COG0109	protoheme IX farnesyltransferase activity
AMJAP_RS15935	COG1612	heme a metabolic process
AMJAP_RS15955	COG1845	cytochrome c oxidase, subunit III
AMJAP_RS15960	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AMJAP_RS15965	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMJAP_RS15970	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMJAP_RS15975	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
AMJAP_RS15985	COG1183	phosphatidylcholine synthase activity
AMJAP_RS15990	COG0519	Catalyzes the synthesis of GMP from XMP
AMJAP_RS15990	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMJAP_RS16000	COG0583	DNA-binding transcription factor activity
AMJAP_RS16015	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
AMJAP_RS16030	COG0028	Belongs to the TPP enzyme family
AMJAP_RS16045	COG0739	heme binding
AMJAP_RS16060	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AMJAP_RS16070	COG0352	thiamine-phosphate diphosphorylase activity
AMJAP_RS16075	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AMJAP_RS16095	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJAP_RS16105	COG0714	Associated with various cellular activities
AMJAP_RS16115	COG1845	cytochrome c oxidase, subunit III
AMJAP_RS16130	COG2010	Cytochrome c
AMJAP_RS16145	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMJAP_RS16155	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
AMJAP_RS16160	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AMJAP_RS16165	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
AMJAP_RS16175	COG1489	DNA binding
AMJAP_RS16180	COG0436	Aminotransferase
AMJAP_RS16185	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AMJAP_RS16190	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMJAP_RS16200	COG4191	Histidine kinase
AMJAP_RS16205	COG2204	response regulator
AMJAP_RS16220	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AMJAP_RS16225	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
AMJAP_RS16230	COG0183	Belongs to the thiolase family
AMJAP_RS16240	COG1187	pseudouridine synthase activity
AMJAP_RS16245	COG2813	Specifically methylates the guanine in position
AMJAP_RS16275	COG1185	polyribonucleotide nucleotidyltransferase activity
AMJAP_RS16280	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AMJAP_RS16285	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AMJAP_RS16290	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AMJAP_RS16295	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AMJAP_RS16300	COG0195	Participates in both transcription termination and antitermination
AMJAP_RS16305	COG0779	Required for maturation of 30S ribosomal subunits
AMJAP_RS16320	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AMJAP_RS16325	COG0149	triose-phosphate isomerase activity
AMJAP_RS16335	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AMJAP_RS16340	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMJAP_RS16345	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AMJAP_RS16410	COG1918	ferrous iron import across plasma membrane
AMJAP_RS16410	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
AMJAP_RS16425	COG0564	pseudouridine synthase activity
AMJAP_RS16435	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AMJAP_RS16475	COG4969	Belongs to the N-Me-Phe pilin family
AMJAP_RS16505	COG1047	Peptidyl-prolyl cis-trans
AMJAP_RS16515	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AMJAP_RS16520	COG0196	riboflavin kinase activity
AMJAP_RS16525	COG0728	peptidoglycan biosynthetic process
AMJAP_RS16530	COG0268	Binds directly to 16S ribosomal RNA
AMJAP_RS16535	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AMJAP_RS16540	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AMJAP_RS16545	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AMJAP_RS16550	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AMJAP_RS16555	COG0142	geranyltranstransferase activity
AMJAP_RS16560	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMJAP_RS16575	COG0315	cyclic pyranopterin monophosphate synthase activity
AMJAP_RS16585	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMJAP_RS16620	COG0203	ribosomal protein L17
AMJAP_RS16635	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AMJAP_RS16640	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AMJAP_RS16645	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AMJAP_RS16655	COG0200	Binds to the 23S rRNA
AMJAP_RS16660	COG1841	ribosomal large subunit assembly
AMJAP_RS16665	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AMJAP_RS16670	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AMJAP_RS16675	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AMJAP_RS16680	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AMJAP_RS16685	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AMJAP_RS16690	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AMJAP_RS16695	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AMJAP_RS16700	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
AMJAP_RS16705	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AMJAP_RS16710	COG0255	Belongs to the universal ribosomal protein uL29 family
AMJAP_RS16715	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AMJAP_RS16720	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AMJAP_RS16725	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AMJAP_RS16730	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AMJAP_RS16735	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AMJAP_RS16740	COG0089	rRNA binding
AMJAP_RS16745	COG0088	Forms part of the polypeptide exit tunnel
AMJAP_RS16750	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AMJAP_RS16755	COG0051	transcription antitermination factor activity, RNA binding
AMJAP_RS16760	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMJAP_RS16765	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AMJAP_RS16770	COG0049	tRNA binding
AMJAP_RS16775	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AMJAP_RS16780	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AMJAP_RS16785	COG0085	RNA polymerase activity
AMJAP_RS16790	COG0222	ribosome binding
AMJAP_RS16800	COG0081	regulation of translation
AMJAP_RS16805	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AMJAP_RS16825	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMJAP_RS16855	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AMJAP_RS16870	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AMJAP_RS16875	COG0494	nUDIX hydrolase
AMJAP_RS16880	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AMJAP_RS16895	COG0494	nUDIX hydrolase
AMJAP_RS16910	COG0667	Aldo Keto reductase
AMJAP_RS16915	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMJAP_RS16920	COG0509	glycine decarboxylation via glycine cleavage system
AMJAP_RS16930	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMJAP_RS16935	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMJAP_RS16940	COG0006	proline dipeptidase activity
AMJAP_RS16945	COG3079	Belongs to the UPF0149 family
AMJAP_RS16965	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AMJAP_RS16980	COG0165	Argininosuccinate lyase
AMJAP_RS16985	COG0181	hydroxymethylbilane synthase activity
AMJAP_RS16995	COG2959	enzyme of heme biosynthesis
AMJAP_RS17000	COG3071	HemY protein
AMJAP_RS17015	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AMJAP_RS17030	COG0248	Ppx GppA phosphatase
AMJAP_RS17040	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AMJAP_RS17045	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AMJAP_RS17050	COG1011	Hydrolase
AMJAP_RS17055	COG0494	nUDIX hydrolase
AMJAP_RS17060	COG1218	3'(2'),5'-bisphosphate nucleotidase
AMJAP_RS17070	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AMJAP_RS17085	COG4181	ATPase activity
AMJAP_RS17090	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AMJAP_RS17100	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AMJAP_RS17105	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AMJAP_RS17145	COG2204	response regulator
AMJAP_RS17150	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_RS17155	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJAP_RS17160	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_RS17175	COG4191	Histidine kinase
AMJAP_RS17180	COG0469	pyruvate kinase activity
AMJAP_RS17205	COG5001	Diguanylate cyclase
AMJAP_RS17205	COG2203	Gaf domain
AMJAP_RS17205	COG3706	GGDEF domain
AMJAP_RS17205	COG4251	negative regulation of phosphorylation
AMJAP_RS17215	COG1126	abc transporter atp-binding protein
AMJAP_RS17220	COG0765	amino acid transport
AMJAP_RS17225	COG4597	amino acid ABC transporter
AMJAP_RS17230	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJAP_RS17235	COG0545	Peptidyl-prolyl cis-trans isomerase
AMJAP_RS17245	COG0488	(ABC) transporter
AMJAP_RS17255	COG0405	Gamma-glutamyltransferase
AMJAP_RS17260	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMJAP_RS17270	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
AMJAP_RS17295	COG0708	Exodeoxyribonuclease III
AMJAP_RS17300	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AMJAP_RS17305	COG1561	YicC-like family, N-terminal region
AMJAP_RS17315	COG1758	RNA polymerase activity
AMJAP_RS17320	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMJAP_RS17350	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMJAP_RS17355	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMJAP_RS17360	COG0140	phosphoribosyl-ATP diphosphatase activity
AMJAP_RS17365	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AMJAP_RS17370	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMJAP_RS17390	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AMJAP_RS17410	COG0210	DNA helicase
AMJAP_RS17415	COG0700	Nucleoside recognition
AMJAP_RS17430	COG0573	inorganic phosphate transmembrane transporter activity
AMJAP_RS17435	COG0573	inorganic phosphate transmembrane transporter activity
AMJAP_RS17440	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AMJAP_RS17455	COG5001	Diguanylate cyclase
AMJAP_RS17455	COG3706	GGDEF domain
AMJAP_RS17455	COG4251	negative regulation of phosphorylation
AMJAP_RS17455	COG2203	Gaf domain
AMJAP_RS17465	COG3161	chorismate lyase activity
AMJAP_RS17470	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMJAP_RS17485	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
AMJAP_RS17510	COG0840	transmembrane signaling receptor activity
AMJAP_RS17550	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_RS17570	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AMJAP_RS17585	COG0069	glutamate synthase activity
AMJAP_RS17600	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMJAP_RS17605	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AMJAP_RS17620	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AMJAP_RS17625	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AMJAP_RS17630	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AMJAP_RS17635	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AMJAP_RS17640	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AMJAP_RS17650	COG0356	it plays a direct role in the translocation of protons across the membrane
AMJAP_RS17660	COG1475	DNA binding
AMJAP_RS17665	COG1192	Involved in chromosome partitioning
AMJAP_RS17670	COG0357	Ribosomal RNA small subunit methyltransferase G
AMJAP_RS17675	COG0445	tRNA wobble uridine modification
AMJAP_RS17685	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AMJAP_RS17690	COG0706	membrane insertase activity
AMJAP_RS17695	COG0594	ribonuclease P activity
AMJAP_RS17700	COG0230	Belongs to the bacterial ribosomal protein bL34 family