locus-tag class description RAM_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix RAM_RS00005 PF00308 Bacterial dnaA protein RAM_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RAM_RS00010 PF02767 DNA polymerase III beta subunit, central domain RAM_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RAM_RS00015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RAM_RS00015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_RS00020 PF02463 RecF/RecN/SMC N terminal domain RAM_RS00025 PF05258 Dna[CI] antecedent, DciA RAM_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS00030 PF01751 Toprim domain RAM_RS00030 PF00204 DNA gyrase B RAM_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus RAM_RS00035 PF00521 DNA gyrase/topoisomerase IV, subunit A RAM_RS00035 PF03989 DNA gyrase C-terminal domain, beta-propeller RAM_RS00040 PF12089 Transmembrane domain of unknown function (DUF3566) RAM_RS00050 PF00589 Phage integrase family RAM_RS00125 PF13732 Domain of unknown function (DUF4162) RAM_RS00125 PF00005 ABC transporter RAM_RS00130 PF01061 ABC-2 type transporter RAM_RS00135 PF00196 Bacterial regulatory proteins, luxR family RAM_RS00140 PF00067 Cytochrome P450 RAM_RS00145 PF00561 alpha/beta hydrolase fold RAM_RS00150 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_RS00150 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RAM_RS00175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_RS00180 PF01694 Rhomboid family RAM_RS00190 PF06781 Cell division protein CrgA RAM_RS00195 PF04203 Sortase domain RAM_RS00215 PF00005 ABC transporter RAM_RS00225 PF00072 Response regulator receiver domain RAM_RS00225 PF00196 Bacterial regulatory proteins, luxR family RAM_RS00230 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS00235 PF00117 Glutamine amidotransferase class-I RAM_RS00240 PF00005 ABC transporter RAM_RS00255 PF03793 PASTA domain RAM_RS00255 PF00069 Protein kinase domain RAM_RS00260 PF00069 Protein kinase domain RAM_RS00265 PF00905 Penicillin binding protein transpeptidase domain RAM_RS00270 PF01098 Cell cycle protein RAM_RS00280 PF16697 Inner membrane component of T3SS, cytoplasmic domain RAM_RS00285 PF00498 FHA domain RAM_RS00285 PF12401 Protein of unknown function (DUF2662) RAM_RS00305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAM_RS00315 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_RS00335 PF00392 Bacterial regulatory proteins, gntR family RAM_RS00335 PF07729 FCD domain RAM_RS00340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_RS00345 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS00350 PF12911 N-terminal TM domain of oligopeptide transport permease C RAM_RS00350 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS00355 PF00005 ABC transporter RAM_RS00355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS00360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS00360 PF00005 ABC transporter RAM_RS00365 PF00171 Aldehyde dehydrogenase family RAM_RS00375 PF01425 Amidase RAM_RS00380 PF02371 Transposase IS116/IS110/IS902 family RAM_RS00380 PF01548 Transposase RAM_RS00395 PF03328 HpcH/HpaI aldolase/citrate lyase family RAM_RS00400 PF03328 HpcH/HpaI aldolase/citrate lyase family RAM_RS00410 PF13460 NAD(P)H-binding RAM_RS00415 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RAM_RS00415 PF14572 Phosphoribosyl synthetase-associated domain RAM_RS00420 PF04030 D-arabinono-1,4-lactone oxidase RAM_RS00420 PF01565 FAD binding domain RAM_RS00430 PF13977 BetI-type transcriptional repressor, C-terminal RAM_RS00430 PF00440 Bacterial regulatory proteins, tetR family RAM_RS00435 PF00232 Glycosyl hydrolase family 1 RAM_RS00470 PF05425 Copper resistance protein D RAM_RS00470 PF13115 YtkA-like RAM_RS00470 PF04234 CopC domain RAM_RS00485 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS00490 PF00005 ABC transporter RAM_RS00490 PF00571 CBS domain RAM_RS00495 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS00500 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RAM_RS00520 PF01209 ubiE/COQ5 methyltransferase family RAM_RS00525 PF00106 short chain dehydrogenase RAM_RS00530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RAM_RS00530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RAM_RS00530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RAM_RS00545 PF01609 Transposase DDE domain RAM_RS00545 PF13808 DDE_Tnp_1-associated RAM_RS00560 PF07690 Major Facilitator Superfamily RAM_RS00570 PF07730 Histidine kinase RAM_RS00575 PF00072 Response regulator receiver domain RAM_RS00575 PF00196 Bacterial regulatory proteins, luxR family RAM_RS00580 PF16363 GDP-mannose 4,6 dehydratase RAM_RS00605 PF00534 Glycosyl transferases group 1 RAM_RS00660 PF06827 Zinc finger found in FPG and IleRS RAM_RS00660 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_RS00665 PF06580 Histidine kinase RAM_RS00665 PF07694 5TMR of 5TMR-LYT RAM_RS00670 PF01343 Peptidase family S49 RAM_RS00670 PF06965 Na+/H+ antiporter 1 RAM_RS00680 PF00072 Response regulator receiver domain RAM_RS00680 PF04397 LytTr DNA-binding domain RAM_RS00690 PF00474 Sodium:solute symporter family RAM_RS00695 PF00581 Rhodanese-like domain RAM_RS00695 PF01206 Sulfurtransferase TusA RAM_RS00710 PF07690 Major Facilitator Superfamily RAM_RS00715 PF02585 GlcNAc-PI de-N-acetylase RAM_RS00720 PF00067 Cytochrome P450 RAM_RS00735 PF04539 Sigma-70 region 3 RAM_RS00735 PF04542 Sigma-70 region 2 RAM_RS00735 PF04545 Sigma-70, region 4 RAM_RS00745 PF00210 Ferritin-like domain RAM_RS00825 PF01654 Cytochrome bd terminal oxidase subunit I RAM_RS00830 PF02322 Cytochrome bd terminal oxidase subunit II RAM_RS00835 PF00664 ABC transporter transmembrane region RAM_RS00835 PF00005 ABC transporter RAM_RS00840 PF13185 GAF domain RAM_RS00840 PF07730 Histidine kinase RAM_RS00840 PF13492 GAF domain RAM_RS00840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS00845 PF00196 Bacterial regulatory proteins, luxR family RAM_RS00845 PF00072 Response regulator receiver domain RAM_RS00890 PF04434 SWIM zinc finger RAM_RS00900 PF00485 Phosphoribulokinase / Uridine kinase family RAM_RS00905 PF01661 Macro domain RAM_RS00910 PF01842 ACT domain RAM_RS00910 PF00800 Prephenate dehydratase RAM_RS00915 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS00950 PF03738 Glutathionylspermidine synthase preATP-grasp RAM_RS00960 PF00561 alpha/beta hydrolase fold RAM_RS00965 PF00202 Aminotransferase class-III RAM_RS00970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_RS00970 PF02403 Seryl-tRNA synthetase N-terminal domain RAM_RS00980 PF01266 FAD dependent oxidoreductase RAM_RS01000 PF00196 Bacterial regulatory proteins, luxR family RAM_RS01005 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_RS01010 PF01370 NAD dependent epimerase/dehydratase family RAM_RS01020 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RAM_RS01020 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_RS01025 PF04545 Sigma-70, region 4 RAM_RS01025 PF04542 Sigma-70 region 2 RAM_RS01035 PF04151 Bacterial pre-peptidase C-terminal domain RAM_RS01035 PF04389 Peptidase family M28 RAM_RS01045 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_RS01050 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_RS01050 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RAM_RS01065 PF13193 AMP-binding enzyme C-terminal domain RAM_RS01065 PF00501 AMP-binding enzyme RAM_RS01105 PF01553 Acyltransferase RAM_RS01115 PF00296 Luciferase-like monooxygenase RAM_RS01125 PF03275 UDP-galactopyranose mutase RAM_RS01130 PF01569 PAP2 superfamily RAM_RS01135 PF01040 UbiA prenyltransferase family RAM_RS01150 PF00106 short chain dehydrogenase RAM_RS01155 PF01565 FAD binding domain RAM_RS01155 PF04030 D-arabinono-1,4-lactone oxidase RAM_RS01160 PF04138 GtrA-like protein RAM_RS01165 PF17994 Galactofuranosyltransferase 2 N-terminal RAM_RS01200 PF00005 ABC transporter RAM_RS01205 PF01061 ABC-2 type transporter RAM_RS01210 PF10759 Protein of unknown function (DUF2587) RAM_RS01215 PF00266 Aminotransferase class-V RAM_RS01220 PF14765 Polyketide synthase dehydratase RAM_RS01220 PF00550 Phosphopantetheine attachment site RAM_RS01220 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS01220 PF00698 Acyl transferase domain RAM_RS01220 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS01220 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS01220 PF00107 Zinc-binding dehydrogenase RAM_RS01220 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS01220 PF08659 KR domain RAM_RS01225 PF02225 PA domain RAM_RS01225 PF04389 Peptidase family M28 RAM_RS01230 PF04228 Putative neutral zinc metallopeptidase RAM_RS01275 PF00106 short chain dehydrogenase RAM_RS01285 PF00072 Response regulator receiver domain RAM_RS01290 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RAM_RS01290 PF17203 Single cache domain 3 RAM_RS01290 PF00989 PAS fold RAM_RS01290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS01295 PF00005 ABC transporter RAM_RS01320 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_RS01320 PF13191 AAA ATPase domain RAM_RS01325 PF02983 Alpha-lytic protease prodomain RAM_RS01330 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_RS01335 PF01037 Lrp/AsnC ligand binding domain RAM_RS01340 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_RS01340 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_RS01345 PF00672 HAMP domain RAM_RS01345 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_RS01350 PF04072 Leucine carboxyl methyltransferase RAM_RS01355 PF07729 FCD domain RAM_RS01355 PF00392 Bacterial regulatory proteins, gntR family RAM_RS01370 PF00155 Aminotransferase class I and II RAM_RS01375 PF01738 Dienelactone hydrolase family RAM_RS01380 PF00501 AMP-binding enzyme RAM_RS01380 PF13193 AMP-binding enzyme C-terminal domain RAM_RS01385 PF01336 OB-fold nucleic acid binding domain RAM_RS01385 PF16995 Transmembrane region of lysyl-tRNA synthetase RAM_RS01385 PF00152 tRNA synthetases class II (D, K and N) RAM_RS01385 PF09924 Uncharacterised conserved protein (DUF2156) RAM_RS01405 PF00041 Fibronectin type III domain RAM_RS01405 PF00704 Glycosyl hydrolases family 18 RAM_RS01405 PF00553 Cellulose binding domain RAM_RS01415 PF00202 Aminotransferase class-III RAM_RS01420 PF03466 LysR substrate binding domain RAM_RS01420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS01440 PF06725 3D domain RAM_RS01440 PF07501 G5 domain RAM_RS01440 PF03990 G5-linked-Ubiquitin-like domain RAM_RS01450 PF00248 Aldo/keto reductase family RAM_RS01465 PF04545 Sigma-70, region 4 RAM_RS01465 PF04539 Sigma-70 region 3 RAM_RS01465 PF04542 Sigma-70 region 2 RAM_RS01470 PF13581 Histidine kinase-like ATPase domain RAM_RS01475 PF02467 Transcription factor WhiB RAM_RS01495 PF00440 Bacterial regulatory proteins, tetR family RAM_RS01520 PF00005 ABC transporter RAM_RS01520 PF13732 Domain of unknown function (DUF4162) RAM_RS01575 PF02153 Prephenate dehydrogenase RAM_RS01580 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS01580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RAM_RS01600 PF01047 MarR family RAM_RS01605 PF07859 alpha/beta hydrolase fold RAM_RS01630 PF00206 Lyase RAM_RS01630 PF10397 Adenylosuccinate lyase C-terminus RAM_RS01635 PF06736 Protein of unknown function (DUF1211) RAM_RS01640 PF04978 Protein of unknown function (DUF664) RAM_RS01650 PF00625 Guanylate kinase RAM_RS01680 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS01710 PF00069 Protein kinase domain RAM_RS01720 PF00465 Iron-containing alcohol dehydrogenase RAM_RS01725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS01725 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS01725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS01730 PF00313 'Cold-shock' DNA-binding domain RAM_RS01740 PF01513 ATP-NAD kinase RAM_RS01745 PF00676 Dehydrogenase E1 component RAM_RS01760 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_RS01765 PF16918 Protein kinase G tetratricopeptide repeat RAM_RS01765 PF16919 Protein kinase G rubredoxin domain RAM_RS01765 PF00069 Protein kinase domain RAM_RS01795 PF00589 Phage integrase family RAM_RS01795 PF14659 Phage integrase, N-terminal SAM-like domain RAM_RS01800 PF12728 Helix-turn-helix domain RAM_RS01805 PF12307 Protein of unknown function (DUF3631) RAM_RS01840 PF00436 Single-strand binding protein family RAM_RS01885 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_RS01890 PF00293 NUDIX domain RAM_RS01890 PF13344 Haloacid dehalogenase-like hydrolase RAM_RS01940 PF13649 Methyltransferase domain RAM_RS01950 PF00797 N-acetyltransferase RAM_RS01955 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS01955 PF00563 EAL domain RAM_RS01955 PF03707 Bacterial signalling protein N terminal repeat RAM_RS01980 PF00860 Permease family RAM_RS01985 PF01717 Cobalamin-independent synthase, Catalytic domain RAM_RS01995 PF01614 Bacterial transcriptional regulator RAM_RS01995 PF09339 IclR helix-turn-helix domain RAM_RS02000 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS02000 PF14759 Reductase C-terminal RAM_RS02005 PF01494 FAD binding domain RAM_RS02010 PF02861 Clp amino terminal domain, pathogenicity island component RAM_RS02015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_RS02015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RAM_RS02075 PF00561 alpha/beta hydrolase fold RAM_RS02085 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) RAM_RS02095 PF01425 Amidase RAM_RS02105 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS02125 PF02861 Clp amino terminal domain, pathogenicity island component RAM_RS02135 PF00155 Aminotransferase class I and II RAM_RS02135 PF00392 Bacterial regulatory proteins, gntR family RAM_RS02145 PF00155 Aminotransferase class I and II RAM_RS02150 PF04286 Protein of unknown function (DUF445) RAM_RS02170 PF01202 Shikimate kinase RAM_RS02180 PF01381 Helix-turn-helix RAM_RS02190 PF10724 Protein of unknown function (DUF2516) RAM_RS02200 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_RS02205 PF00221 Aromatic amino acid lyase RAM_RS02235 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS02245 PF08241 Methyltransferase domain RAM_RS02250 PF01047 MarR family RAM_RS02260 PF16884 N-terminal domain of oxidoreductase RAM_RS02260 PF00107 Zinc-binding dehydrogenase RAM_RS02275 PF00107 Zinc-binding dehydrogenase RAM_RS02275 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS02280 PF00551 Formyl transferase RAM_RS02305 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RAM_RS02305 PF01565 FAD binding domain RAM_RS02310 PF03734 L,D-transpeptidase catalytic domain RAM_RS02310 PF17964 Bacterial Ig domain RAM_RS02315 PF00561 alpha/beta hydrolase fold RAM_RS02320 PF13439 Glycosyltransferase Family 4 RAM_RS02320 PF00534 Glycosyl transferases group 1 RAM_RS02325 PF10722 Putative bacterial sensory transduction regulator RAM_RS02335 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS02345 PF00248 Aldo/keto reductase family RAM_RS02350 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS02350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS02355 PF00072 Response regulator receiver domain RAM_RS02355 PF00486 Transcriptional regulatory protein, C terminal RAM_RS02360 PF02541 Ppx/GppA phosphatase family RAM_RS02370 PF01261 Xylose isomerase-like TIM barrel RAM_RS02380 PF14748 Pyrroline-5-carboxylate reductase dimerisation RAM_RS02380 PF03807 NADP oxidoreductase coenzyme F420-dependent RAM_RS02385 PF12728 Helix-turn-helix domain RAM_RS02390 PF01370 NAD dependent epimerase/dehydratase family RAM_RS02395 PF01553 Acyltransferase RAM_RS02405 PF00196 Bacterial regulatory proteins, luxR family RAM_RS02405 PF00072 Response regulator receiver domain RAM_RS02425 PF04542 Sigma-70 region 2 RAM_RS02425 PF08281 Sigma-70, region 4 RAM_RS02430 PF00501 AMP-binding enzyme RAM_RS02430 PF13193 AMP-binding enzyme C-terminal domain RAM_RS02435 PF05768 Glutaredoxin-like domain (DUF836) RAM_RS02445 PF06971 Putative DNA-binding protein N-terminus RAM_RS02445 PF02629 CoA binding domain RAM_RS02450 PF01488 Shikimate / quinate 5-dehydrogenase RAM_RS02450 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RAM_RS02450 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RAM_RS02455 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RAM_RS02455 PF03900 Porphobilinogen deaminase, C-terminal domain RAM_RS02460 PF10414 Sirohaem synthase dimerisation region RAM_RS02460 PF14824 Sirohaem biosynthesis protein central RAM_RS02460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_RS02465 PF16363 GDP-mannose 4,6 dehydratase RAM_RS02475 PF00490 Delta-aminolevulinic acid dehydratase RAM_RS02495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RAM_RS02500 PF00005 ABC transporter RAM_RS02500 PF02687 FtsX-like permease family RAM_RS02500 PF12704 MacB-like periplasmic core domain RAM_RS02505 PF02687 FtsX-like permease family RAM_RS02505 PF12704 MacB-like periplasmic core domain RAM_RS02505 PF00005 ABC transporter RAM_RS02520 PF00202 Aminotransferase class-III RAM_RS02525 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS02530 PF00578 AhpC/TSA family RAM_RS02535 PF02683 Cytochrome C biogenesis protein transmembrane region RAM_RS02545 PF01578 Cytochrome C assembly protein RAM_RS02550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_RS02565 PF01037 Lrp/AsnC ligand binding domain RAM_RS02580 PF01040 UbiA prenyltransferase family RAM_RS02585 PF00501 AMP-binding enzyme RAM_RS02585 PF13193 AMP-binding enzyme C-terminal domain RAM_RS02590 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS02595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS02595 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS02600 PF01433 Peptidase family M1 domain RAM_RS02600 PF11838 ERAP1-like C-terminal domain RAM_RS02610 PF00459 Inositol monophosphatase family RAM_RS02615 PF00534 Glycosyl transferases group 1 RAM_RS02615 PF13439 Glycosyltransferase Family 4 RAM_RS02620 PF00534 Glycosyl transferases group 1 RAM_RS02620 PF13579 Glycosyl transferase 4-like domain RAM_RS02635 PF01209 ubiE/COQ5 methyltransferase family RAM_RS02640 PF01494 FAD binding domain RAM_RS02645 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RAM_RS02650 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RAM_RS02655 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RAM_RS02660 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RAM_RS02670 PF10531 SLBB domain RAM_RS02670 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_RS02670 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RAM_RS02675 PF00384 Molybdopterin oxidoreductase RAM_RS02675 PF01568 Molydopterin dinucleotide binding domain RAM_RS02675 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RAM_RS02680 PF00146 NADH dehydrogenase RAM_RS02685 PF12838 4Fe-4S dicluster domain RAM_RS02690 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RAM_RS02695 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RAM_RS02700 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RAM_RS02700 PF00361 Proton-conducting membrane transporter RAM_RS02705 PF00361 Proton-conducting membrane transporter RAM_RS02710 PF00361 Proton-conducting membrane transporter RAM_RS02735 PF00348 Polyprenyl synthetase RAM_RS02750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS02755 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RAM_RS02755 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RAM_RS02755 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RAM_RS02760 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS02765 PF01037 Lrp/AsnC ligand binding domain RAM_RS02765 PF13404 AsnC-type helix-turn-helix domain RAM_RS02785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RAM_RS02785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RAM_RS02785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RAM_RS02790 PF00534 Glycosyl transferases group 1 RAM_RS02790 PF13439 Glycosyltransferase Family 4 RAM_RS02805 PF00733 Asparagine synthase RAM_RS02805 PF13537 Glutamine amidotransferase domain RAM_RS02810 PF00107 Zinc-binding dehydrogenase RAM_RS02830 PF13439 Glycosyltransferase Family 4 RAM_RS02830 PF00534 Glycosyl transferases group 1 RAM_RS02850 PF00202 Aminotransferase class-III RAM_RS02855 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RAM_RS02865 PF00535 Glycosyl transferase family 2 RAM_RS02875 PF09940 Domain of unknown function (DUF2172) RAM_RS02875 PF16221 winged helix-turn-helix RAM_RS02875 PF16254 Domain of unknown function (DUF4910) RAM_RS02880 PF16363 GDP-mannose 4,6 dehydratase RAM_RS02890 PF00483 Nucleotidyl transferase RAM_RS02895 PF08421 Putative zinc binding domain RAM_RS02895 PF08484 C-methyltransferase C-terminal domain RAM_RS02905 PF00296 Luciferase-like monooxygenase RAM_RS02915 PF01435 Peptidase family M48 RAM_RS02920 PF00296 Luciferase-like monooxygenase RAM_RS02925 PF00296 Luciferase-like monooxygenase RAM_RS02930 PF00483 Nucleotidyl transferase RAM_RS02945 PF04461 Protein of unknown function (DUF520) RAM_RS02960 PF08241 Methyltransferase domain RAM_RS02965 PF02190 ATP-dependent protease La (LON) substrate-binding domain RAM_RS02965 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS02965 PF05362 Lon protease (S16) C-terminal proteolytic domain RAM_RS02980 PF00563 EAL domain RAM_RS02980 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS02980 PF03707 Bacterial signalling protein N terminal repeat RAM_RS02995 PF00471 Ribosomal protein L33 RAM_RS03000 PF13452 N-terminal half of MaoC dehydratase RAM_RS03020 PF00392 Bacterial regulatory proteins, gntR family RAM_RS03025 PF00296 Luciferase-like monooxygenase RAM_RS03035 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RAM_RS03040 PF02357 Transcription termination factor nusG RAM_RS03045 PF03946 Ribosomal protein L11, N-terminal domain RAM_RS03045 PF00298 Ribosomal protein L11, RNA binding domain RAM_RS03050 PF00687 Ribosomal protein L1p/L10e family RAM_RS03055 PF00561 alpha/beta hydrolase fold RAM_RS03065 PF00466 Ribosomal protein L10 RAM_RS03070 PF16320 Ribosomal protein L7/L12 dimerisation domain RAM_RS03070 PF00542 Ribosomal protein L7/L12 C-terminal domain RAM_RS03075 PF00005 ABC transporter RAM_RS03085 PF02405 Permease MlaE RAM_RS03110 PF02470 MlaD protein RAM_RS03135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS03135 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS03150 PF00067 Cytochrome P450 RAM_RS03155 PF14765 Polyketide synthase dehydratase RAM_RS03155 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS03155 PF00550 Phosphopantetheine attachment site RAM_RS03155 PF08659 KR domain RAM_RS03155 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS03155 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS03155 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS03155 PF00698 Acyl transferase domain RAM_RS03160 PF08659 KR domain RAM_RS03160 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS03160 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS03160 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS03160 PF00698 Acyl transferase domain RAM_RS03160 PF14765 Polyketide synthase dehydratase RAM_RS03160 PF00550 Phosphopantetheine attachment site RAM_RS03165 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS03165 PF08990 Erythronolide synthase docking RAM_RS03165 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS03165 PF08659 KR domain RAM_RS03165 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS03165 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS03165 PF00698 Acyl transferase domain RAM_RS03165 PF14765 Polyketide synthase dehydratase RAM_RS03165 PF14765 Polyketide synthase dehydratase RAM_RS03165 PF00698 Acyl transferase domain RAM_RS03165 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS03165 PF00550 Phosphopantetheine attachment site RAM_RS03165 PF08659 KR domain RAM_RS03165 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS03165 PF08990 Erythronolide synthase docking RAM_RS03165 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS03165 PF00550 Phosphopantetheine attachment site RAM_RS03165 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS03170 PF08659 KR domain RAM_RS03170 PF00550 Phosphopantetheine attachment site RAM_RS03170 PF14765 Polyketide synthase dehydratase RAM_RS03170 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS03170 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS03170 PF00698 Acyl transferase domain RAM_RS03170 PF08990 Erythronolide synthase docking RAM_RS03170 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS03170 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS03170 PF08990 Erythronolide synthase docking RAM_RS03170 PF00698 Acyl transferase domain RAM_RS03170 PF14765 Polyketide synthase dehydratase RAM_RS03170 PF00550 Phosphopantetheine attachment site RAM_RS03170 PF08659 KR domain RAM_RS03170 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS03170 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS03170 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS03170 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS03175 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS03175 PF08659 KR domain RAM_RS03175 PF00550 Phosphopantetheine attachment site RAM_RS03175 PF14765 Polyketide synthase dehydratase RAM_RS03175 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS03175 PF00698 Acyl transferase domain RAM_RS03175 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS03175 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS03180 PF00797 N-acetyltransferase RAM_RS03190 PF01761 3-dehydroquinate synthase RAM_RS03195 PF01474 Class-II DAHP synthetase family RAM_RS03200 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RAM_RS03200 PF08501 Shikimate dehydrogenase substrate binding domain RAM_RS03205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_RS03210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS03210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS03215 PF13419 Haloacid dehalogenase-like hydrolase RAM_RS03220 PF00480 ROK family RAM_RS03225 PF02585 GlcNAc-PI de-N-acetylase RAM_RS03230 PF07859 alpha/beta hydrolase fold RAM_RS03235 PF07690 Major Facilitator Superfamily RAM_RS03250 PF00067 Cytochrome P450 RAM_RS03255 PF00067 Cytochrome P450 RAM_RS03260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_RS03265 PF06722 Protein of unknown function (DUF1205) RAM_RS03270 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RAM_RS03275 PF00202 Aminotransferase class-III RAM_RS03280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS03290 PF00296 Luciferase-like monooxygenase RAM_RS03295 PF03559 NDP-hexose 2,3-dehydratase RAM_RS03300 PF01494 FAD binding domain RAM_RS03310 PF00975 Thioesterase domain RAM_RS03315 PF00067 Cytochrome P450 RAM_RS03320 PF08241 Methyltransferase domain RAM_RS03325 PF00456 Transketolase, thiamine diphosphate binding domain RAM_RS03330 PF02779 Transketolase, pyrimidine binding domain RAM_RS03335 PF00067 Cytochrome P450 RAM_RS03340 PF01220 Dehydroquinase class II RAM_RS03345 PF00196 Bacterial regulatory proteins, luxR family RAM_RS03350 PF00562 RNA polymerase Rpb2, domain 6 RAM_RS03350 PF04565 RNA polymerase Rpb2, domain 3 RAM_RS03350 PF10385 RNA polymerase beta subunit external 1 domain RAM_RS03350 PF04561 RNA polymerase Rpb2, domain 2 RAM_RS03350 PF04563 RNA polymerase beta subunit RAM_RS03350 PF04560 RNA polymerase Rpb2, domain 7 RAM_RS03355 PF05000 RNA polymerase Rpb1, domain 4 RAM_RS03355 PF04983 RNA polymerase Rpb1, domain 3 RAM_RS03355 PF00623 RNA polymerase Rpb1, domain 2 RAM_RS03355 PF04997 RNA polymerase Rpb1, domain 1 RAM_RS03355 PF04998 RNA polymerase Rpb1, domain 5 RAM_RS03365 PF01427 D-ala-D-ala dipeptidase RAM_RS03370 PF01037 Lrp/AsnC ligand binding domain RAM_RS03375 PF07690 Major Facilitator Superfamily RAM_RS03385 PF00027 Cyclic nucleotide-binding domain RAM_RS03385 PF13302 Acetyltransferase (GNAT) domain RAM_RS03430 PF00164 Ribosomal protein S12/S23 RAM_RS03435 PF00177 Ribosomal protein S7p/S5e RAM_RS03440 PF14492 Elongation Factor G, domain II RAM_RS03440 PF00679 Elongation factor G C-terminus RAM_RS03440 PF03144 Elongation factor Tu domain 2 RAM_RS03440 PF00009 Elongation factor Tu GTP binding domain RAM_RS03440 PF03764 Elongation factor G, domain IV RAM_RS03445 PF03144 Elongation factor Tu domain 2 RAM_RS03445 PF00009 Elongation factor Tu GTP binding domain RAM_RS03445 PF03143 Elongation factor Tu C-terminal domain RAM_RS03450 PF00338 Ribosomal protein S10p/S20e RAM_RS03455 PF00297 Ribosomal protein L3 RAM_RS03460 PF00573 Ribosomal protein L4/L1 family RAM_RS03465 PF00276 Ribosomal protein L23 RAM_RS03470 PF03947 Ribosomal Proteins L2, C-terminal domain RAM_RS03470 PF00181 Ribosomal Proteins L2, RNA binding domain RAM_RS03475 PF00203 Ribosomal protein S19 RAM_RS03480 PF00237 Ribosomal protein L22p/L17e RAM_RS03485 PF07650 KH domain RAM_RS03485 PF00189 Ribosomal protein S3, C-terminal domain RAM_RS03490 PF00252 Ribosomal protein L16p/L10e RAM_RS03495 PF00831 Ribosomal L29 protein RAM_RS03500 PF00366 Ribosomal protein S17 RAM_RS03505 PF00238 Ribosomal protein L14p/L23e RAM_RS03510 PF00467 KOW motif RAM_RS03510 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RAM_RS03515 PF00673 ribosomal L5P family C-terminus RAM_RS03515 PF00281 Ribosomal protein L5 RAM_RS03520 PF00253 Ribosomal protein S14p/S29e RAM_RS03525 PF00410 Ribosomal protein S8 RAM_RS03530 PF00347 Ribosomal protein L6 RAM_RS03535 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RAM_RS03540 PF03719 Ribosomal protein S5, C-terminal domain RAM_RS03540 PF00333 Ribosomal protein S5, N-terminal domain RAM_RS03545 PF00327 Ribosomal protein L30p/L7e RAM_RS03550 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RAM_RS03560 PF01810 LysE type translocator RAM_RS03565 PF00344 SecY translocase RAM_RS03575 PF00557 Metallopeptidase family M24 RAM_RS03580 PF01176 Translation initiation factor 1A / IF-1 RAM_RS03585 PF00444 Ribosomal protein L36 RAM_RS03590 PF00416 Ribosomal protein S13/S18 RAM_RS03600 PF00411 Ribosomal protein S11 RAM_RS03605 PF00163 Ribosomal protein S4/S9 N-terminal domain RAM_RS03605 PF01479 S4 domain RAM_RS03610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RAM_RS03610 PF01000 RNA polymerase Rpb3/RpoA insert domain RAM_RS03610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RAM_RS03615 PF01196 Ribosomal protein L17 RAM_RS03620 PF01416 tRNA pseudouridine synthase RAM_RS03640 PF05108 Type VII secretion system ESX-1, transport TM domain B RAM_RS03655 PF00082 Subtilase family RAM_RS03665 PF01580 FtsK/SpoIIIE family RAM_RS03670 PF00012 Hsp70 protein RAM_RS03690 PF14230 Domain of unknown function (DUF4333) RAM_RS03700 PF00572 Ribosomal protein L13 RAM_RS03705 PF00380 Ribosomal protein S9/S16 RAM_RS03710 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RAM_RS03710 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RAM_RS03710 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RAM_RS03710 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RAM_RS03720 PF00501 AMP-binding enzyme RAM_RS03750 PF01380 SIS domain RAM_RS03755 PF03853 YjeF-related protein N-terminus RAM_RS03755 PF01256 Carbohydrate kinase RAM_RS03760 PF00455 DeoR C terminal sensor domain RAM_RS03760 PF08220 DeoR-like helix-turn-helix domain RAM_RS03765 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_RS03765 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_RS03770 PF17912 MalK OB fold domain RAM_RS03770 PF00005 ABC transporter RAM_RS03775 PF01168 Alanine racemase, N-terminal domain RAM_RS03775 PF00842 Alanine racemase, C-terminal domain RAM_RS03780 PF00561 alpha/beta hydrolase fold RAM_RS03780 PF00364 Biotin-requiring enzyme RAM_RS03785 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RAM_RS03795 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RAM_RS03795 PF17848 Acetyl-coA carboxylase zinc finger domain RAM_RS03795 PF01039 Carboxyl transferase domain RAM_RS03800 PF13193 AMP-binding enzyme C-terminal domain RAM_RS03800 PF00501 AMP-binding enzyme RAM_RS03805 PF00814 Glycoprotease family RAM_RS03810 PF00583 Acetyltransferase (GNAT) family RAM_RS03815 PF00814 Glycoprotease family RAM_RS03820 PF02350 UDP-N-acetylglucosamine 2-epimerase RAM_RS03850 PF13847 Methyltransferase domain RAM_RS03855 PF01022 Bacterial regulatory protein, arsR family RAM_RS03860 PF01451 Low molecular weight phosphotyrosine protein phosphatase RAM_RS03865 PF01758 Sodium Bile acid symporter family RAM_RS03870 PF01022 Bacterial regulatory protein, arsR family RAM_RS03875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_RS03880 PF00166 Chaperonin 10 Kd subunit RAM_RS03885 PF00118 TCP-1/cpn60 chaperonin family RAM_RS03890 PF02467 Transcription factor WhiB RAM_RS03905 PF00072 Response regulator receiver domain RAM_RS03905 PF00196 Bacterial regulatory proteins, luxR family RAM_RS03910 PF08281 Sigma-70, region 4 RAM_RS03910 PF04542 Sigma-70 region 2 RAM_RS03920 PF17252 Family of unknown function (DUF5319) RAM_RS03925 PF00571 CBS domain RAM_RS03925 PF00478 IMP dehydrogenase / GMP reductase domain RAM_RS03935 PF00478 IMP dehydrogenase / GMP reductase domain RAM_RS03945 PF05199 GMC oxidoreductase RAM_RS03955 PF08031 Berberine and berberine like RAM_RS03955 PF01565 FAD binding domain RAM_RS03960 PF00171 Aldehyde dehydrogenase family RAM_RS03965 PF13823 Alcohol dehydrogenase GroES-associated RAM_RS03965 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS03965 PF00107 Zinc-binding dehydrogenase RAM_RS03980 PF02540 NAD synthase RAM_RS03980 PF00117 Glutamine amidotransferase class-I RAM_RS03980 PF00958 GMP synthase C terminal domain RAM_RS04010 PF00196 Bacterial regulatory proteins, luxR family RAM_RS04010 PF00072 Response regulator receiver domain RAM_RS04015 PF00892 EamA-like transporter family RAM_RS04020 PF03466 LysR substrate binding domain RAM_RS04020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS04025 PF00069 Protein kinase domain RAM_RS04025 PF13191 AAA ATPase domain RAM_RS04030 PF00069 Protein kinase domain RAM_RS04030 PF03793 PASTA domain RAM_RS04050 PF01817 Chorismate mutase type II RAM_RS04060 PF13361 UvrD-like helicase C-terminal domain RAM_RS04060 PF00580 UvrD/REP helicase N-terminal domain RAM_RS04065 PF01551 Peptidase family M23 RAM_RS04065 PF01476 LysM domain RAM_RS04080 PF00549 CoA-ligase RAM_RS04080 PF08442 ATP-grasp domain RAM_RS04085 PF00549 CoA-ligase RAM_RS04085 PF02629 CoA binding domain RAM_RS04100 PF00551 Formyl transferase RAM_RS04105 PF01808 AICARFT/IMPCHase bienzyme RAM_RS04105 PF02142 MGS-like domain RAM_RS04145 PF14579 Helix-hairpin-helix motif RAM_RS04145 PF01336 OB-fold nucleic acid binding domain RAM_RS04145 PF07733 Bacterial DNA polymerase III alpha NTPase domain RAM_RS04145 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RAM_RS04145 PF02811 PHP domain RAM_RS04150 PF08241 Methyltransferase domain RAM_RS04165 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RAM_RS04165 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RAM_RS04175 PF07690 Major Facilitator Superfamily RAM_RS04180 PF01022 Bacterial regulatory protein, arsR family RAM_RS04185 PF07690 Major Facilitator Superfamily RAM_RS04195 PF12105 SpoU, rRNA methylase, C-terminal RAM_RS04195 PF00588 SpoU rRNA Methylase family RAM_RS04220 PF08241 Methyltransferase domain RAM_RS04235 PF00180 Isocitrate/isopropylmalate dehydrogenase RAM_RS04255 PF12706 Beta-lactamase superfamily domain RAM_RS04270 PF00579 tRNA synthetases class I (W and Y) RAM_RS04280 PF03631 Virulence factor BrkB RAM_RS04290 PF01638 HxlR-like helix-turn-helix RAM_RS04295 PF00768 D-alanyl-D-alanine carboxypeptidase RAM_RS04305 PF00082 Subtilase family RAM_RS04315 PF13085 2Fe-2S iron-sulfur cluster binding domain RAM_RS04320 PF00890 FAD binding domain RAM_RS04320 PF02910 Fumarate reductase flavoprotein C-term RAM_RS04330 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RAM_RS04335 PF16499 Alpha galactosidase A RAM_RS04335 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_RS04340 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation RAM_RS04340 PF14508 Glycosyl-hydrolase 97 N-terminal RAM_RS04340 PF10566 Glycoside hydrolase 97 RAM_RS04345 PF02608 ABC transporter substrate-binding protein PnrA-like RAM_RS04350 PF00005 ABC transporter RAM_RS04360 PF02653 Branched-chain amino acid transport system / permease component RAM_RS04365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_RS04370 PF00591 Glycosyl transferase family, a/b domain RAM_RS04370 PF02885 Glycosyl transferase family, helical bundle domain RAM_RS04370 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RAM_RS04380 PF00962 Adenosine/AMP deaminase RAM_RS04385 PF07690 Major Facilitator Superfamily RAM_RS04395 PF00270 DEAD/DEAH box helicase RAM_RS04395 PF08148 DSHCT (NUC185) domain RAM_RS04395 PF00271 Helicase conserved C-terminal domain RAM_RS04405 PF01638 HxlR-like helix-turn-helix RAM_RS04415 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS04415 PF00107 Zinc-binding dehydrogenase RAM_RS04425 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS04430 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS04435 PF00975 Thioesterase domain RAM_RS04440 PF00067 Cytochrome P450 RAM_RS04445 PF00067 Cytochrome P450 RAM_RS04465 PF00171 Aldehyde dehydrogenase family RAM_RS04470 PF00171 Aldehyde dehydrogenase family RAM_RS04475 PF01791 DeoC/LacD family aldolase RAM_RS04500 PF04542 Sigma-70 region 2 RAM_RS04500 PF04545 Sigma-70, region 4 RAM_RS04515 PF09278 MerR, DNA binding RAM_RS04515 PF00376 MerR family regulatory protein RAM_RS04520 PF00248 Aldo/keto reductase family RAM_RS04530 PF01070 FMN-dependent dehydrogenase RAM_RS04540 PF00999 Sodium/hydrogen exchanger family RAM_RS04545 PF00072 Response regulator receiver domain RAM_RS04545 PF00486 Transcriptional regulatory protein, C terminal RAM_RS04550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS04550 PF00672 HAMP domain RAM_RS04550 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS04560 PF03129 Anticodon binding domain RAM_RS04560 PF13393 Histidyl-tRNA synthetase RAM_RS04570 PF01979 Amidohydrolase family RAM_RS04595 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RAM_RS04595 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RAM_RS04595 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RAM_RS04595 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RAM_RS04600 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_RS04605 PF01048 Phosphorylase superfamily RAM_RS04625 PF00069 Protein kinase domain RAM_RS04630 PF01642 Methylmalonyl-CoA mutase RAM_RS04635 PF01642 Methylmalonyl-CoA mutase RAM_RS04635 PF02310 B12 binding domain RAM_RS04650 PF01546 Peptidase family M20/M25/M40 RAM_RS04650 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_RS04665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_RS04665 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS04685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_RS04685 PF18029 Glyoxalase-like domain RAM_RS04690 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_RS04690 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_RS04695 PF00230 Major intrinsic protein RAM_RS04700 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RAM_RS04700 PF01266 FAD dependent oxidoreductase RAM_RS04735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_RS04735 PF00289 Biotin carboxylase, N-terminal domain RAM_RS04735 PF00364 Biotin-requiring enzyme RAM_RS04735 PF02785 Biotin carboxylase C-terminal domain RAM_RS04750 PF00375 Sodium:dicarboxylate symporter family RAM_RS04755 PF02545 Maf-like protein RAM_RS04760 PF14310 Fibronectin type III-like domain RAM_RS04760 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS04760 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS04765 PF07690 Major Facilitator Superfamily RAM_RS04780 PF00296 Luciferase-like monooxygenase RAM_RS04785 PF01047 MarR family RAM_RS04795 PF01039 Carboxyl transferase domain RAM_RS04805 PF00072 Response regulator receiver domain RAM_RS04805 PF00196 Bacterial regulatory proteins, luxR family RAM_RS04810 PF07730 Histidine kinase RAM_RS04830 PF00440 Bacterial regulatory proteins, tetR family RAM_RS04835 PF01494 FAD binding domain RAM_RS04840 PF01638 HxlR-like helix-turn-helix RAM_RS04855 PF12833 Helix-turn-helix domain RAM_RS04855 PF01965 DJ-1/PfpI family RAM_RS04865 PF03466 LysR substrate binding domain RAM_RS04865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS04880 PF01209 ubiE/COQ5 methyltransferase family RAM_RS04890 PF08281 Sigma-70, region 4 RAM_RS04890 PF04542 Sigma-70 region 2 RAM_RS04895 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RAM_RS04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS04915 PF07730 Histidine kinase RAM_RS04920 PF00196 Bacterial regulatory proteins, luxR family RAM_RS04920 PF00072 Response regulator receiver domain RAM_RS04925 PF08239 Bacterial SH3 domain RAM_RS04925 PF00877 NlpC/P60 family RAM_RS04925 PF01476 LysM domain RAM_RS04930 PF02237 Biotin protein ligase C terminal domain RAM_RS04930 PF03099 Biotin/lipoate A/B protein ligase family RAM_RS04940 PF00682 HMGL-like RAM_RS04955 PF07971 Glycosyl hydrolase family 92 RAM_RS04955 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_RS04960 PF00459 Inositol monophosphatase family RAM_RS04965 PF00072 Response regulator receiver domain RAM_RS04965 PF00486 Transcriptional regulatory protein, C terminal RAM_RS04970 PF00672 HAMP domain RAM_RS04970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS04970 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS04975 PF00196 Bacterial regulatory proteins, luxR family RAM_RS04975 PF00072 Response regulator receiver domain RAM_RS04980 PF00072 Response regulator receiver domain RAM_RS04980 PF00196 Bacterial regulatory proteins, luxR family RAM_RS04990 PF07690 Major Facilitator Superfamily RAM_RS05015 PF09594 Glycosyltransferase family 87 RAM_RS05020 PF09594 Glycosyltransferase family 87 RAM_RS05025 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RAM_RS05025 PF02222 ATP-grasp domain RAM_RS05030 PF00731 AIR carboxylase RAM_RS05045 PF13193 AMP-binding enzyme C-terminal domain RAM_RS05045 PF00501 AMP-binding enzyme RAM_RS05050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS05050 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS05050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS05085 PF13460 NAD(P)H-binding RAM_RS05090 PF03816 Cell envelope-related transcriptional attenuator domain RAM_RS05090 PF13399 LytR cell envelope-related transcriptional attenuator RAM_RS05095 PF13399 LytR cell envelope-related transcriptional attenuator RAM_RS05095 PF03816 Cell envelope-related transcriptional attenuator domain RAM_RS05100 PF16363 GDP-mannose 4,6 dehydratase RAM_RS05105 PF04321 RmlD substrate binding domain RAM_RS05110 PF00534 Glycosyl transferases group 1 RAM_RS05110 PF13439 Glycosyltransferase Family 4 RAM_RS05125 PF13439 Glycosyltransferase Family 4 RAM_RS05125 PF00534 Glycosyl transferases group 1 RAM_RS05145 PF00483 Nucleotidyl transferase RAM_RS05160 PF00392 Bacterial regulatory proteins, gntR family RAM_RS05175 PF01996 F420-0:Gamma-glutamyl ligase RAM_RS05175 PF00881 Nitroreductase family RAM_RS05180 PF01933 Uncharacterised protein family UPF0052 RAM_RS05195 PF00037 4Fe-4S binding domain RAM_RS05200 PF00155 Aminotransferase class I and II RAM_RS05210 PF01494 FAD binding domain RAM_RS05220 PF14602 Hexapeptide repeat of succinyl-transferase RAM_RS05220 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle RAM_RS05230 PF07687 Peptidase dimerisation domain RAM_RS05230 PF01546 Peptidase family M20/M25/M40 RAM_RS05245 PF01483 Proprotein convertase P-domain RAM_RS05245 PF04389 Peptidase family M28 RAM_RS05250 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_RS05250 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_RS05250 PF04389 Peptidase family M28 RAM_RS05260 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_RS05260 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_RS05260 PF04389 Peptidase family M28 RAM_RS05270 PF03641 Possible lysine decarboxylase RAM_RS05275 PF03641 Possible lysine decarboxylase RAM_RS05295 PF01757 Acyltransferase family RAM_RS05310 PF00535 Glycosyl transferase family 2 RAM_RS05315 PF00005 ABC transporter RAM_RS05315 PF00664 ABC transporter transmembrane region RAM_RS05320 PF00664 ABC transporter transmembrane region RAM_RS05320 PF00005 ABC transporter RAM_RS05325 PF02322 Cytochrome bd terminal oxidase subunit II RAM_RS05330 PF01654 Cytochrome bd terminal oxidase subunit I RAM_RS05355 PF03352 Methyladenine glycosylase RAM_RS05360 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS05370 PF00883 Cytosol aminopeptidase family, catalytic domain RAM_RS05370 PF02789 Cytosol aminopeptidase family, N-terminal domain RAM_RS05375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS05375 PF03466 LysR substrate binding domain RAM_RS05380 PF07690 Major Facilitator Superfamily RAM_RS05385 PF01596 O-methyltransferase RAM_RS05390 PF04542 Sigma-70 region 2 RAM_RS05390 PF08281 Sigma-70, region 4 RAM_RS05400 PF13180 PDZ domain RAM_RS05405 PF02416 mttA/Hcf106 family RAM_RS05410 PF01883 Iron-sulfur cluster assembly protein RAM_RS05410 PF10609 NUBPL iron-transfer P-loop NTPase RAM_RS05420 PF00571 CBS domain RAM_RS05420 PF03448 MgtE intracellular N domain RAM_RS05420 PF01769 Divalent cation transporter RAM_RS05425 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase RAM_RS05430 PF01145 SPFH domain / Band 7 family RAM_RS05445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS05445 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS05445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS05455 PF01547 Bacterial extracellular solute-binding protein RAM_RS05460 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS05465 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS05470 PF00005 ABC transporter RAM_RS05470 PF17912 MalK OB fold domain RAM_RS05485 PF00440 Bacterial regulatory proteins, tetR family RAM_RS05485 PF17925 Tetracyclin repressor-like, C-terminal domain RAM_RS05490 PF07690 Major Facilitator Superfamily RAM_RS05495 PF00072 Response regulator receiver domain RAM_RS05495 PF00196 Bacterial regulatory proteins, luxR family RAM_RS05500 PF07730 Histidine kinase RAM_RS05510 PF04542 Sigma-70 region 2 RAM_RS05510 PF04545 Sigma-70, region 4 RAM_RS05530 PF01544 CorA-like Mg2+ transporter protein RAM_RS05545 PF13344 Haloacid dehalogenase-like hydrolase RAM_RS05545 PF00293 NUDIX domain RAM_RS05560 PF02811 PHP domain RAM_RS05565 PF01914 MarC family integral membrane protein RAM_RS05590 PF00270 DEAD/DEAH box helicase RAM_RS05590 PF00271 Helicase conserved C-terminal domain RAM_RS05610 PF00440 Bacterial regulatory proteins, tetR family RAM_RS05620 PF12697 Alpha/beta hydrolase family RAM_RS05625 PF00440 Bacterial regulatory proteins, tetR family RAM_RS05625 PF08362 YcdC-like protein, C-terminal region RAM_RS05630 PF12697 Alpha/beta hydrolase family RAM_RS05640 PF00581 Rhodanese-like domain RAM_RS05640 PF00899 ThiF family RAM_RS05650 PF00384 Molybdopterin oxidoreductase RAM_RS05650 PF01568 Molydopterin dinucleotide binding domain RAM_RS05650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS05655 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_RS05655 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS05655 PF18267 Rubredoxin NAD+ reductase C-terminal domain RAM_RS05655 PF04324 BFD-like [2Fe-2S] binding domain RAM_RS05655 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RAM_RS05660 PF07690 Major Facilitator Superfamily RAM_RS05665 PF04324 BFD-like [2Fe-2S] binding domain RAM_RS05665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RAM_RS05665 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_RS05665 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS05665 PF18267 Rubredoxin NAD+ reductase C-terminal domain RAM_RS05665 PF13806 Rieske-like [2Fe-2S] domain RAM_RS05670 PF18267 Rubredoxin NAD+ reductase C-terminal domain RAM_RS05670 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RAM_RS05670 PF04324 BFD-like [2Fe-2S] binding domain RAM_RS05670 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS05670 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_RS05670 PF13806 Rieske-like [2Fe-2S] domain RAM_RS05695 PF08279 HTH domain RAM_RS05695 PF13280 WYL domain RAM_RS05710 PF13361 UvrD-like helicase C-terminal domain RAM_RS05710 PF00580 UvrD/REP helicase N-terminal domain RAM_RS05715 PF13361 UvrD-like helicase C-terminal domain RAM_RS05715 PF00580 UvrD/REP helicase N-terminal domain RAM_RS05735 PF04228 Putative neutral zinc metallopeptidase RAM_RS05750 PF14258 Domain of unknown function (DUF4350) RAM_RS05755 PF17863 AAA lid domain RAM_RS05755 PF07726 ATPase family associated with various cellular activities (AAA) RAM_RS05780 PF04228 Putative neutral zinc metallopeptidase RAM_RS05800 PF00675 Insulinase (Peptidase family M16) RAM_RS05800 PF05193 Peptidase M16 inactive domain RAM_RS05805 PF00293 NUDIX domain RAM_RS05805 PF09297 NADH pyrophosphatase zinc ribbon domain RAM_RS05805 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RAM_RS05810 PF01047 MarR family RAM_RS05810 PF00480 ROK family RAM_RS05820 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS05825 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS05830 PF02056 Family 4 glycosyl hydrolase RAM_RS05830 PF11975 Family 4 glycosyl hydrolase C-terminal domain RAM_RS05845 PF01022 Bacterial regulatory protein, arsR family RAM_RS05855 PF02447 GntP family permease RAM_RS05870 PF03186 CobD/Cbib protein RAM_RS05885 PF02104 SURF1 family RAM_RS05890 PF01451 Low molecular weight phosphotyrosine protein phosphatase RAM_RS05900 PF01817 Chorismate mutase type II RAM_RS05905 PF01784 NIF3 (NGG1p interacting factor 3) RAM_RS05910 PF02591 C4-type zinc ribbon domain RAM_RS05915 PF13456 Reverse transcriptase-like RAM_RS05915 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS05925 PF02040 Arsenical pump membrane protein RAM_RS05930 PF00072 Response regulator receiver domain RAM_RS05930 PF00196 Bacterial regulatory proteins, luxR family RAM_RS05940 PF04542 Sigma-70 region 2 RAM_RS05940 PF04545 Sigma-70, region 4 RAM_RS05955 PF14759 Reductase C-terminal RAM_RS05955 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS05990 PF00877 NlpC/P60 family RAM_RS06005 PF00773 RNB domain RAM_RS06005 PF08206 Ribonuclease B OB domain RAM_RS06005 PF17876 Cold shock domain RAM_RS06005 PF08461 Ribonuclease R winged-helix domain RAM_RS06010 PF01497 Periplasmic binding protein RAM_RS06015 PF00171 Aldehyde dehydrogenase family RAM_RS06020 PF00202 Aminotransferase class-III RAM_RS06040 PF00392 Bacterial regulatory proteins, gntR family RAM_RS06040 PF07729 FCD domain RAM_RS06045 PF00171 Aldehyde dehydrogenase family RAM_RS06050 PF00005 ABC transporter RAM_RS06050 PF08402 TOBE domain RAM_RS06055 PF13416 Bacterial extracellular solute-binding protein RAM_RS06060 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS06065 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS06070 PF00561 alpha/beta hydrolase fold RAM_RS06075 PF02673 Bacitracin resistance protein BacA RAM_RS06085 PF02548 Ketopantoate hydroxymethyltransferase RAM_RS06090 PF01336 OB-fold nucleic acid binding domain RAM_RS06090 PF16995 Transmembrane region of lysyl-tRNA synthetase RAM_RS06090 PF00152 tRNA synthetases class II (D, K and N) RAM_RS06090 PF09924 Uncharacterised conserved protein (DUF2156) RAM_RS06100 PF04978 Protein of unknown function (DUF664) RAM_RS06115 PF02540 NAD synthase RAM_RS06115 PF00795 Carbon-nitrogen hydrolase RAM_RS06120 PF07516 SecA Wing and Scaffold domain RAM_RS06120 PF07517 SecA DEAD-like domain RAM_RS06120 PF01043 SecA preprotein cross-linking domain RAM_RS06125 PF00561 alpha/beta hydrolase fold RAM_RS06140 PF03951 Glutamine synthetase, beta-Grasp domain RAM_RS06140 PF00120 Glutamine synthetase, catalytic domain RAM_RS06145 PF01425 Amidase RAM_RS06165 PF01037 Lrp/AsnC ligand binding domain RAM_RS06175 PF02540 NAD synthase RAM_RS06175 PF00117 Glutamine amidotransferase class-I RAM_RS06175 PF00958 GMP synthase C terminal domain RAM_RS06185 PF08335 GlnD PII-uridylyltransferase RAM_RS06185 PF03710 Glutamate-ammonia ligase adenylyltransferase RAM_RS06195 PF00120 Glutamine synthetase, catalytic domain RAM_RS06195 PF03951 Glutamine synthetase, beta-Grasp domain RAM_RS06210 PF13829 Domain of unknown function (DUF4191) RAM_RS06215 PF13361 UvrD-like helicase C-terminal domain RAM_RS06215 PF00580 UvrD/REP helicase N-terminal domain RAM_RS06215 PF00570 HRDC domain RAM_RS06225 PF02467 Transcription factor WhiB RAM_RS06255 PF03109 ABC1 family RAM_RS06275 PF13180 PDZ domain RAM_RS06275 PF05362 Lon protease (S16) C-terminal proteolytic domain RAM_RS06285 PF03699 Uncharacterised protein family (UPF0182) RAM_RS06295 PF01494 FAD binding domain RAM_RS06300 PF00440 Bacterial regulatory proteins, tetR family RAM_RS06300 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_RS06315 PF03462 PCRF domain RAM_RS06315 PF00472 RF-1 domain RAM_RS06320 PF00005 ABC transporter RAM_RS06325 PF02687 FtsX-like permease family RAM_RS06325 PF18075 FtsX extracellular domain RAM_RS06330 PF01668 SmpB protein RAM_RS06355 PF00072 Response regulator receiver domain RAM_RS06355 PF00196 Bacterial regulatory proteins, luxR family RAM_RS06360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS06360 PF07730 Histidine kinase RAM_RS06370 PF17151 Periplasmic sensor domain RAM_RS06370 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS06385 PF00221 Aromatic amino acid lyase RAM_RS06390 PF17392 Urocanase C-terminal domain RAM_RS06390 PF01175 Urocanase Rossmann-like domain RAM_RS06390 PF17391 Urocanase N-terminal domain RAM_RS06395 PF07687 Peptidase dimerisation domain RAM_RS06395 PF01546 Peptidase family M20/M25/M40 RAM_RS06400 PF01979 Amidohydrolase family RAM_RS06405 PF01979 Amidohydrolase family RAM_RS06410 PF01494 FAD binding domain RAM_RS06425 PF01384 Phosphate transporter family RAM_RS06445 PF07730 Histidine kinase RAM_RS06450 PF00072 Response regulator receiver domain RAM_RS06450 PF00196 Bacterial regulatory proteins, luxR family RAM_RS06455 PF01494 FAD binding domain RAM_RS06475 PF00005 ABC transporter RAM_RS06480 PF08482 ATP-dependent helicase C-terminal RAM_RS06480 PF00271 Helicase conserved C-terminal domain RAM_RS06480 PF04408 Helicase associated domain (HA2) RAM_RS06480 PF00270 DEAD/DEAH box helicase RAM_RS06485 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_RS06495 PF00069 Protein kinase domain RAM_RS06495 PF13462 Thioredoxin RAM_RS06505 PF00877 NlpC/P60 family RAM_RS06520 PF01494 FAD binding domain RAM_RS06530 PF04978 Protein of unknown function (DUF664) RAM_RS06535 PF14310 Fibronectin type III-like domain RAM_RS06535 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS06535 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS06545 PF00521 DNA gyrase/topoisomerase IV, subunit A RAM_RS06545 PF03989 DNA gyrase C-terminal domain, beta-propeller RAM_RS06550 PF01751 Toprim domain RAM_RS06550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS06550 PF00986 DNA gyrase B subunit, carboxyl terminus RAM_RS06550 PF00204 DNA gyrase B RAM_RS06565 PF03358 NADPH-dependent FMN reductase RAM_RS06595 PF02653 Branched-chain amino acid transport system / permease component RAM_RS06600 PF02653 Branched-chain amino acid transport system / permease component RAM_RS06605 PF00005 ABC transporter RAM_RS06610 PF13407 Periplasmic binding protein domain RAM_RS06615 PF00356 Bacterial regulatory proteins, lacI family RAM_RS06620 PF02463 RecF/RecN/SMC N terminal domain RAM_RS06625 PF01638 HxlR-like helix-turn-helix RAM_RS06635 PF00440 Bacterial regulatory proteins, tetR family RAM_RS06635 PF13305 Tetracyclin repressor-like, C-terminal domain RAM_RS06650 PF17760 UvrA interaction domain RAM_RS06650 PF00005 ABC transporter RAM_RS06650 PF17755 UvrA DNA-binding domain RAM_RS06680 PF12706 Beta-lactamase superfamily domain RAM_RS06695 PF02983 Alpha-lytic protease prodomain RAM_RS06695 PF00089 Trypsin RAM_RS06700 PF03848 Tellurite resistance protein TehB RAM_RS06715 PF00067 Cytochrome P450 RAM_RS06720 PF01336 OB-fold nucleic acid binding domain RAM_RS06720 PF00152 tRNA synthetases class II (D, K and N) RAM_RS06740 PF00561 alpha/beta hydrolase fold RAM_RS06745 PF07995 Glucose / Sorbosone dehydrogenase RAM_RS06755 PF01906 Putative heavy-metal-binding RAM_RS06760 PF01906 Putative heavy-metal-binding RAM_RS06765 PF00294 pfkB family carbohydrate kinase RAM_RS06770 PF02056 Family 4 glycosyl hydrolase RAM_RS06770 PF11975 Family 4 glycosyl hydrolase C-terminal domain RAM_RS06780 PF00890 FAD binding domain RAM_RS06785 PF00296 Luciferase-like monooxygenase RAM_RS06790 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_RS06790 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RAM_RS06800 PF06441 Epoxide hydrolase N terminus RAM_RS06835 PF00809 Pterin binding enzyme RAM_RS06845 PF00005 ABC transporter RAM_RS06885 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS06885 PF16483 Beta-1,3-glucanase RAM_RS06890 PF00892 EamA-like transporter family RAM_RS06895 PF01047 MarR family RAM_RS06905 PF03830 PTS system sorbose subfamily IIB component RAM_RS06910 PF03613 PTS system mannose/fructose/sorbose family IID component RAM_RS06915 PF03610 PTS system fructose IIA component RAM_RS06930 PF00486 Transcriptional regulatory protein, C terminal RAM_RS06930 PF03704 Bacterial transcriptional activator domain RAM_RS06930 PF00931 NB-ARC domain RAM_RS06940 PF07690 Major Facilitator Superfamily RAM_RS06950 PF09084 NMT1/THI5 like RAM_RS06955 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_RS06955 PF00005 ABC transporter RAM_RS06960 PF00005 ABC transporter RAM_RS06980 PF00440 Bacterial regulatory proteins, tetR family RAM_RS07000 PF00072 Response regulator receiver domain RAM_RS07000 PF00196 Bacterial regulatory proteins, luxR family RAM_RS07010 PF00005 ABC transporter RAM_RS07020 PF00457 Glycosyl hydrolases family 11 RAM_RS07025 PF01522 Polysaccharide deacetylase RAM_RS07025 PF00457 Glycosyl hydrolases family 11 RAM_RS07030 PF00005 ABC transporter RAM_RS07070 PF07690 Major Facilitator Superfamily RAM_RS07075 PF00171 Aldehyde dehydrogenase family RAM_RS07085 PF00723 Glycosyl hydrolases family 15 RAM_RS07090 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS07090 PF00107 Zinc-binding dehydrogenase RAM_RS07110 PF00296 Luciferase-like monooxygenase RAM_RS07125 PF17964 Bacterial Ig domain RAM_RS07125 PF03734 L,D-transpeptidase catalytic domain RAM_RS07130 PF07690 Major Facilitator Superfamily RAM_RS07135 PF11838 ERAP1-like C-terminal domain RAM_RS07135 PF01433 Peptidase family M1 domain RAM_RS07160 PF03527 RHS protein RAM_RS07160 PF05593 RHS Repeat RAM_RS07195 PF14765 Polyketide synthase dehydratase RAM_RS07195 PF00698 Acyl transferase domain RAM_RS07195 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS07195 PF00550 Phosphopantetheine attachment site RAM_RS07195 PF08659 KR domain RAM_RS07195 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS07195 PF00107 Zinc-binding dehydrogenase RAM_RS07195 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS07195 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS07205 PF00107 Zinc-binding dehydrogenase RAM_RS07205 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS07225 PF03259 Roadblock/LC7 domain RAM_RS07240 PF00067 Cytochrome P450 RAM_RS07255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS07255 PF03466 LysR substrate binding domain RAM_RS07270 PF01494 FAD binding domain RAM_RS07275 PF00440 Bacterial regulatory proteins, tetR family RAM_RS07275 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_RS07305 PF00248 Aldo/keto reductase family RAM_RS07315 PF08281 Sigma-70, region 4 RAM_RS07315 PF04542 Sigma-70 region 2 RAM_RS07345 PF00486 Transcriptional regulatory protein, C terminal RAM_RS07345 PF00931 NB-ARC domain RAM_RS07345 PF03704 Bacterial transcriptional activator domain RAM_RS07355 PF03055 Retinal pigment epithelial membrane protein RAM_RS07370 PF00107 Zinc-binding dehydrogenase RAM_RS07370 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS07385 PF00682 HMGL-like RAM_RS07390 PF13193 AMP-binding enzyme C-terminal domain RAM_RS07390 PF00501 AMP-binding enzyme RAM_RS07395 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_RS07395 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS07405 PF00072 Response regulator receiver domain RAM_RS07405 PF00196 Bacterial regulatory proteins, luxR family RAM_RS07435 PF12706 Beta-lactamase superfamily domain RAM_RS07435 PF00753 Metallo-beta-lactamase superfamily RAM_RS07440 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS07445 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS07445 PF00989 PAS fold RAM_RS07445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS07450 PF00135 Carboxylesterase family RAM_RS07485 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_RS07490 PF02371 Transposase IS116/IS110/IS902 family RAM_RS07490 PF01548 Transposase RAM_RS07500 PF00174 Oxidoreductase molybdopterin binding domain RAM_RS07505 PF00175 Oxidoreductase NAD-binding domain RAM_RS07505 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS07505 PF00970 Oxidoreductase FAD-binding domain RAM_RS07530 PF00350 Dynamin family RAM_RS07535 PF00350 Dynamin family RAM_RS07545 PF01638 HxlR-like helix-turn-helix RAM_RS07550 PF13193 AMP-binding enzyme C-terminal domain RAM_RS07550 PF00501 AMP-binding enzyme RAM_RS07565 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_RS07570 PF01270 Glycosyl hydrolases family 8 RAM_RS07575 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS07575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS07580 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_RS07585 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS07590 PF00005 ABC transporter RAM_RS07595 PF08348 YheO-like PAS domain RAM_RS07595 PF13309 HTH domain RAM_RS07605 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_RS07610 PF00561 alpha/beta hydrolase fold RAM_RS07615 PF00005 ABC transporter RAM_RS07635 PF11798 IMS family HHH motif RAM_RS07635 PF00817 impB/mucB/samB family RAM_RS07635 PF11799 impB/mucB/samB family C-terminal domain RAM_RS07645 PF00392 Bacterial regulatory proteins, gntR family RAM_RS07645 PF07729 FCD domain RAM_RS07650 PF02653 Branched-chain amino acid transport system / permease component RAM_RS07655 PF00005 ABC transporter RAM_RS07660 PF13407 Periplasmic binding protein domain RAM_RS07670 PF00348 Polyprenyl synthetase RAM_RS07695 PF13407 Periplasmic binding protein domain RAM_RS07705 PF07470 Glycosyl Hydrolase Family 88 RAM_RS07725 PF09423 PhoD-like phosphatase RAM_RS07725 PF16655 PhoD-like phosphatase, N-terminal domain RAM_RS07730 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RAM_RS07730 PF12708 Pectate lyase superfamily protein RAM_RS07730 PF13229 Right handed beta helix region RAM_RS07735 PF07470 Glycosyl Hydrolase Family 88 RAM_RS07750 PF00480 ROK family RAM_RS07760 PF07730 Histidine kinase RAM_RS07760 PF17200 Single Cache domain 2 RAM_RS07770 PF00106 short chain dehydrogenase RAM_RS07775 PF02547 Queuosine biosynthesis protein RAM_RS07790 PF00005 ABC transporter RAM_RS07795 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS07810 PF00271 Helicase conserved C-terminal domain RAM_RS07810 PF00270 DEAD/DEAH box helicase RAM_RS07835 PF17674 HHH domain RAM_RS07835 PF00575 S1 RNA binding domain RAM_RS07835 PF09371 Tex-like protein N-terminal domain RAM_RS07835 PF16921 Tex protein YqgF-like domain RAM_RS07840 PF02018 Carbohydrate binding domain RAM_RS07840 PF00041 Fibronectin type III domain RAM_RS07840 PF00704 Glycosyl hydrolases family 18 RAM_RS07845 PF05199 GMC oxidoreductase RAM_RS07860 PF12833 Helix-turn-helix domain RAM_RS07860 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RAM_RS07880 PF00440 Bacterial regulatory proteins, tetR family RAM_RS07880 PF18665 Tetracyclin repressor-like, C-terminal domain RAM_RS07885 PF14535 AMP-binding enzyme C-terminal domain RAM_RS07885 PF00501 AMP-binding enzyme RAM_RS07895 PF01575 MaoC like domain RAM_RS07895 PF00171 Aldehyde dehydrogenase family RAM_RS07900 PF05138 Phenylacetic acid catabolic protein RAM_RS07905 PF06243 Phenylacetic acid degradation B RAM_RS07910 PF05138 Phenylacetic acid catabolic protein RAM_RS07915 PF01883 Iron-sulfur cluster assembly protein RAM_RS07920 PF00970 Oxidoreductase FAD-binding domain RAM_RS07920 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS07920 PF00175 Oxidoreductase NAD-binding domain RAM_RS07935 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_RS07935 PF16701 Adenylate cyclase regulatory domain RAM_RS07940 PF00582 Universal stress protein family RAM_RS07950 PF00107 Zinc-binding dehydrogenase RAM_RS07950 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS07970 PF00108 Thiolase, N-terminal domain RAM_RS07970 PF02803 Thiolase, C-terminal domain RAM_RS07980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_RS07985 PF00392 Bacterial regulatory proteins, gntR family RAM_RS07985 PF00155 Aminotransferase class I and II RAM_RS07990 PF02627 Carboxymuconolactone decarboxylase family RAM_RS08000 PF00474 Sodium:solute symporter family RAM_RS08010 PF00474 Sodium:solute symporter family RAM_RS08020 PF00072 Response regulator receiver domain RAM_RS08020 PF04397 LytTr DNA-binding domain RAM_RS08025 PF06580 Histidine kinase RAM_RS08025 PF07694 5TMR of 5TMR-LYT RAM_RS08035 PF13407 Periplasmic binding protein domain RAM_RS08040 PF02653 Branched-chain amino acid transport system / permease component RAM_RS08045 PF00005 ABC transporter RAM_RS08055 PF00356 Bacterial regulatory proteins, lacI family RAM_RS08060 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_RS08060 PF07971 Glycosyl hydrolase family 92 RAM_RS08065 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_RS08065 PF07971 Glycosyl hydrolase family 92 RAM_RS08075 PF01047 MarR family RAM_RS08080 PF01910 Thiamine-binding protein RAM_RS08090 PF00085 Thioredoxin RAM_RS08100 PF00343 Carbohydrate phosphorylase RAM_RS08100 PF11897 Protein of unknown function (DUF3417) RAM_RS08125 PF00296 Luciferase-like monooxygenase RAM_RS08140 PF00005 ABC transporter RAM_RS08145 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS08150 PF01209 ubiE/COQ5 methyltransferase family RAM_RS08155 PF18096 THUMP domain-like RAM_RS08165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS08165 PF03466 LysR substrate binding domain RAM_RS08170 PF02839 Carbohydrate binding domain RAM_RS08180 PF00392 Bacterial regulatory proteins, gntR family RAM_RS08180 PF00155 Aminotransferase class I and II RAM_RS08190 PF01494 FAD binding domain RAM_RS08215 PF00248 Aldo/keto reductase family RAM_RS08220 PF01494 FAD binding domain RAM_RS08225 PF00877 NlpC/P60 family RAM_RS08230 PF01156 Inosine-uridine preferring nucleoside hydrolase RAM_RS08235 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_RS08250 PF00585 C-terminal regulatory domain of Threonine dehydratase RAM_RS08250 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS08265 PF09856 Predicted transcriptional regulator (DUF2083) RAM_RS08265 PF06114 IrrE N-terminal-like domain RAM_RS08265 PF01381 Helix-turn-helix RAM_RS08270 PF00463 Isocitrate lyase family RAM_RS08275 PF01274 Malate synthase RAM_RS08305 PF00534 Glycosyl transferases group 1 RAM_RS08305 PF13439 Glycosyltransferase Family 4 RAM_RS08310 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS08310 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_RS08310 PF00703 Glycosyl hydrolases family 2 RAM_RS08315 PF00255 Glutathione peroxidase RAM_RS08320 PF03065 Glycosyl hydrolase family 57 RAM_RS08320 PF09210 Domain of unknown function (DUF1957) RAM_RS08325 PF08241 Methyltransferase domain RAM_RS08335 PF02645 Uncharacterised protein, DegV family COG1307 RAM_RS08340 PF01012 Electron transfer flavoprotein domain RAM_RS08345 PF01012 Electron transfer flavoprotein domain RAM_RS08345 PF00766 Electron transfer flavoprotein FAD-binding domain RAM_RS08360 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS08360 PF00107 Zinc-binding dehydrogenase RAM_RS08365 PF00196 Bacterial regulatory proteins, luxR family RAM_RS08365 PF00072 Response regulator receiver domain RAM_RS08370 PF07690 Major Facilitator Superfamily RAM_RS08375 PF00266 Aminotransferase class-V RAM_RS08400 PF00753 Metallo-beta-lactamase superfamily RAM_RS08420 PF00533 BRCA1 C Terminus (BRCT) domain RAM_RS08420 PF01653 NAD-dependent DNA ligase adenylation domain RAM_RS08420 PF03120 NAD-dependent DNA ligase OB-fold domain RAM_RS08420 PF12826 Helix-hairpin-helix motif RAM_RS08420 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RAM_RS08435 PF02686 Glu-tRNAGln amidotransferase C subunit RAM_RS08440 PF01425 Amidase RAM_RS08445 PF02637 GatB domain RAM_RS08445 PF02934 GatB/GatE catalytic domain RAM_RS08470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS08470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS08480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_RS08480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_RS08490 PF00920 Dehydratase family RAM_RS08500 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS08500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS08500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS08505 PF10369 Small subunit of acetolactate synthase RAM_RS08510 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RAM_RS08510 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RAM_RS08540 PF00440 Bacterial regulatory proteins, tetR family RAM_RS08545 PF01842 ACT domain RAM_RS08545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_RS08545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_RS08550 PF00082 Subtilase family RAM_RS08550 PF02225 PA domain RAM_RS08550 PF13860 FlgD Ig-like domain RAM_RS08550 PF05922 Peptidase inhibitor I9 RAM_RS08555 PF00180 Isocitrate/isopropylmalate dehydrogenase RAM_RS08560 PF00682 HMGL-like RAM_RS08560 PF08502 LeuA allosteric (dimerisation) domain RAM_RS08565 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_RS08570 PF01494 FAD binding domain RAM_RS08590 PF00216 Bacterial DNA-binding protein RAM_RS08595 PF03704 Bacterial transcriptional activator domain RAM_RS08595 PF00931 NB-ARC domain RAM_RS08595 PF00486 Transcriptional regulatory protein, C terminal RAM_RS08640 PF11774 Lsr2 RAM_RS08650 PF00216 Bacterial DNA-binding protein RAM_RS08660 PF12320 Type 5 capsule protein repressor C-terminal domain RAM_RS08660 PF00149 Calcineurin-like phosphoesterase RAM_RS08665 PF13476 AAA domain RAM_RS08675 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS08675 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS08675 PF14310 Fibronectin type III-like domain RAM_RS08695 PF09339 IclR helix-turn-helix domain RAM_RS08695 PF01614 Bacterial transcriptional regulator RAM_RS08700 PF00330 Aconitase family (aconitate hydratase) RAM_RS08705 PF00694 Aconitase C-terminal domain RAM_RS08710 PF00216 Bacterial DNA-binding protein RAM_RS08715 PF00931 NB-ARC domain RAM_RS08715 PF00486 Transcriptional regulatory protein, C terminal RAM_RS08715 PF03704 Bacterial transcriptional activator domain RAM_RS08720 PF00293 NUDIX domain RAM_RS08720 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS08725 PF02503 Polyphosphate kinase middle domain RAM_RS08725 PF13090 Polyphosphate kinase C-terminal domain 2 RAM_RS08725 PF17941 Polyphosphate kinase C-terminal domain 1 RAM_RS08725 PF13089 Polyphosphate kinase N-terminal domain RAM_RS08730 PF01983 Guanylyl transferase CofC like RAM_RS08740 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RAM_RS08740 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RAM_RS08750 PF00710 Asparaginase, N-terminal RAM_RS08750 PF17763 Glutaminase/Asparaginase C-terminal domain RAM_RS08760 PF02424 ApbE family RAM_RS08770 PF00175 Oxidoreductase NAD-binding domain RAM_RS08770 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS08775 PF00486 Transcriptional regulatory protein, C terminal RAM_RS08775 PF00072 Response regulator receiver domain RAM_RS08780 PF00672 HAMP domain RAM_RS08780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS08780 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS08790 PF00392 Bacterial regulatory proteins, gntR family RAM_RS08795 PF07478 D-ala D-ala ligase C-terminus RAM_RS08795 PF01820 D-ala D-ala ligase N-terminus RAM_RS08810 PF02769 AIR synthase related protein, C-terminal domain RAM_RS08810 PF00586 AIR synthase related protein, N-terminal domain RAM_RS08820 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_RS08820 PF16499 Alpha galactosidase A RAM_RS08825 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_RS08830 PF03167 Uracil DNA glycosylase superfamily RAM_RS08840 PF00830 Ribosomal L28 family RAM_RS08845 PF13684 Dihydroxyacetone kinase family RAM_RS08845 PF02734 DAK2 domain RAM_RS08850 PF00270 DEAD/DEAH box helicase RAM_RS08850 PF17191 RecG wedge domain RAM_RS08850 PF00271 Helicase conserved C-terminal domain RAM_RS08865 PF05139 Erythromycin esterase RAM_RS08865 PF00156 Phosphoribosyl transferase domain RAM_RS08875 PF00082 Subtilase family RAM_RS08875 PF05922 Peptidase inhibitor I9 RAM_RS08875 PF04151 Bacterial pre-peptidase C-terminal domain RAM_RS08880 PF13808 DDE_Tnp_1-associated RAM_RS08880 PF01609 Transposase DDE domain RAM_RS08890 PF02785 Biotin carboxylase C-terminal domain RAM_RS08890 PF02436 Conserved carboxylase domain RAM_RS08890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_RS08890 PF00289 Biotin carboxylase, N-terminal domain RAM_RS08890 PF00682 HMGL-like RAM_RS08890 PF00364 Biotin-requiring enzyme RAM_RS08895 PF00491 Arginase family RAM_RS08960 PF02470 MlaD protein RAM_RS08985 PF02405 Permease MlaE RAM_RS08995 PF00296 Luciferase-like monooxygenase RAM_RS09000 PF01494 FAD binding domain RAM_RS09010 PF02861 Clp amino terminal domain, pathogenicity island component RAM_RS09010 PF17871 AAA lid domain RAM_RS09010 PF07724 AAA domain (Cdc48 subfamily) RAM_RS09010 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS09010 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_RS09015 PF00400 WD domain, G-beta repeat RAM_RS09015 PF12894 Anaphase-promoting complex subunit 4 WD40 domain RAM_RS09020 PF13538 UvrD-like helicase C-terminal domain RAM_RS09030 PF01467 Cytidylyltransferase-like RAM_RS09035 PF00545 ribonuclease RAM_RS09055 PF02620 Large ribosomal RNA subunit accumulation protein YceD RAM_RS09060 PF01783 Ribosomal L32p protein family RAM_RS09065 PF00035 Double-stranded RNA binding motif RAM_RS09065 PF14622 Ribonuclease-III-like RAM_RS09070 PF14592 Chondroitinase B RAM_RS09075 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_RS09075 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_RS09075 PF06827 Zinc finger found in FPG and IleRS RAM_RS09095 PF08450 SMP-30/Gluconolactonase/LRE-like region RAM_RS09110 PF12697 Alpha/beta hydrolase family RAM_RS09120 PF00120 Glutamine synthetase, catalytic domain RAM_RS09125 PF07722 Peptidase C26 RAM_RS09130 PF00171 Aldehyde dehydrogenase family RAM_RS09150 PF02347 Glycine cleavage system P-protein RAM_RS09155 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_RS09155 PF01571 Aminomethyltransferase folate-binding domain RAM_RS09160 PF01597 Glycine cleavage H-protein RAM_RS09165 PF00464 Serine hydroxymethyltransferase RAM_RS09170 PF04055 Radical SAM superfamily RAM_RS09170 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RAM_RS09175 PF03315 Serine dehydratase beta chain RAM_RS09175 PF03313 Serine dehydratase alpha chain RAM_RS09185 PF04255 Protein of unknown function (DUF433) RAM_RS09195 PF00392 Bacterial regulatory proteins, gntR family RAM_RS09195 PF07729 FCD domain RAM_RS09205 PF00912 Transglycosylase RAM_RS09205 PF00905 Penicillin binding protein transpeptidase domain RAM_RS09210 PF01596 O-methyltransferase RAM_RS09215 PF00392 Bacterial regulatory proteins, gntR family RAM_RS09215 PF00155 Aminotransferase class I and II RAM_RS09220 PF01494 FAD binding domain RAM_RS09230 PF00106 short chain dehydrogenase RAM_RS09240 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS09240 PF14759 Reductase C-terminal RAM_RS09245 PF07739 TipAS antibiotic-recognition domain RAM_RS09245 PF13411 MerR HTH family regulatory protein RAM_RS09255 PF07690 Major Facilitator Superfamily RAM_RS09260 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_RS09265 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS09265 PF13378 Enolase C-terminal domain-like RAM_RS09275 PF13407 Periplasmic binding protein domain RAM_RS09280 PF00005 ABC transporter RAM_RS09285 PF02653 Branched-chain amino acid transport system / permease component RAM_RS09290 PF07729 FCD domain RAM_RS09290 PF00392 Bacterial regulatory proteins, gntR family RAM_RS09295 PF00248 Aldo/keto reductase family RAM_RS09305 PF08281 Sigma-70, region 4 RAM_RS09305 PF04542 Sigma-70 region 2 RAM_RS09315 PF02656 Domain of unknown function (DUF202) RAM_RS09335 PF02595 Glycerate kinase family RAM_RS09340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_RS09340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_RS09345 PF16875 Glycosyl hydrolase family 36 N-terminal domain RAM_RS09345 PF16874 Glycosyl hydrolase family 36 C-terminal domain RAM_RS09350 PF00480 ROK family RAM_RS09355 PF01547 Bacterial extracellular solute-binding protein RAM_RS09360 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS09365 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS09370 PF16499 Alpha galactosidase A RAM_RS09370 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_RS09375 PF01144 Coenzyme A transferase RAM_RS09380 PF01144 Coenzyme A transferase RAM_RS09385 PF00108 Thiolase, N-terminal domain RAM_RS09385 PF02803 Thiolase, C-terminal domain RAM_RS09390 PF00775 Dioxygenase RAM_RS09390 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal RAM_RS09395 PF00775 Dioxygenase RAM_RS09400 PF12146 Serine aminopeptidase, S33 RAM_RS09405 PF02627 Carboxymuconolactone decarboxylase family RAM_RS09410 PF01614 Bacterial transcriptional regulator RAM_RS09410 PF09339 IclR helix-turn-helix domain RAM_RS09415 PF12804 MobA-like NTP transferase domain RAM_RS09420 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS09420 PF05362 Lon protease (S16) C-terminal proteolytic domain RAM_RS09420 PF02190 ATP-dependent protease La (LON) substrate-binding domain RAM_RS09440 PF01799 [2Fe-2S] binding domain RAM_RS09440 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS09445 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_RS09445 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS09450 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_RS09450 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_RS09460 PF08448 PAS fold RAM_RS09460 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS09465 PF00743 Flavin-binding monooxygenase-like RAM_RS09470 PF00248 Aldo/keto reductase family RAM_RS09480 PF00149 Calcineurin-like phosphoesterase RAM_RS09495 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS09495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS09495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS09500 PF04962 KduI/IolB family RAM_RS09510 PF00294 pfkB family carbohydrate kinase RAM_RS09515 PF00005 ABC transporter RAM_RS09520 PF02653 Branched-chain amino acid transport system / permease component RAM_RS09530 PF01261 Xylose isomerase-like TIM barrel RAM_RS09535 PF00356 Bacterial regulatory proteins, lacI family RAM_RS09540 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS09540 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS09545 PF00733 Asparagine synthase RAM_RS09545 PF13537 Glutamine amidotransferase domain RAM_RS09555 PF03814 Potassium-transporting ATPase A subunit RAM_RS09565 PF02669 K+-transporting ATPase, c chain RAM_RS09570 PF00582 Universal stress protein family RAM_RS09570 PF02702 Osmosensitive K+ channel His kinase sensor domain RAM_RS09570 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS09570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS09570 PF13493 Domain of unknown function (DUF4118) RAM_RS09575 PF00072 Response regulator receiver domain RAM_RS09575 PF00486 Transcriptional regulatory protein, C terminal RAM_RS09600 PF00708 Acylphosphatase RAM_RS09605 PF06470 SMC proteins Flexible Hinge Domain RAM_RS09605 PF02463 RecF/RecN/SMC N terminal domain RAM_RS09615 PF00474 Sodium:solute symporter family RAM_RS09620 PF03702 Anhydro-N-acetylmuramic acid kinase RAM_RS09625 PF00448 SRP54-type protein, GTPase domain RAM_RS09625 PF02881 SRP54-type protein, helical bundle domain RAM_RS09640 PF09339 IclR helix-turn-helix domain RAM_RS09640 PF01614 Bacterial transcriptional regulator RAM_RS09645 PF01274 Malate synthase RAM_RS09670 PF00375 Sodium:dicarboxylate symporter family RAM_RS09680 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS09680 PF17853 GGDEF-like domain RAM_RS09680 PF05651 Putative sugar diacid recognition RAM_RS09685 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_RS09685 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_RS09690 PF01799 [2Fe-2S] binding domain RAM_RS09690 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS09695 PF01979 Amidohydrolase family RAM_RS09700 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_RS09700 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS09705 PF16499 Alpha galactosidase A RAM_RS09705 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_RS09710 PF00440 Bacterial regulatory proteins, tetR family RAM_RS09720 PF01014 Uricase RAM_RS09725 PF00576 HIUase/Transthyretin family RAM_RS09740 PF01979 Amidohydrolase family RAM_RS09745 PF03561 Allantoicase repeat RAM_RS09750 PF13380 CoA binding domain RAM_RS09755 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_RS09770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS09770 PF03466 LysR substrate binding domain RAM_RS09775 PF08281 Sigma-70, region 4 RAM_RS09775 PF04542 Sigma-70 region 2 RAM_RS09775 PF12680 SnoaL-like domain RAM_RS09790 PF00909 Ammonium Transporter Family RAM_RS09795 PF00543 Nitrogen regulatory protein P-II RAM_RS09800 PF01966 HD domain RAM_RS09800 PF08335 GlnD PII-uridylyltransferase RAM_RS09805 PF01494 FAD binding domain RAM_RS09820 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS09820 PF08448 PAS fold RAM_RS09830 PF00440 Bacterial regulatory proteins, tetR family RAM_RS09840 PF02735 Ku70/Ku80 beta-barrel domain RAM_RS09850 PF00664 ABC transporter transmembrane region RAM_RS09850 PF00005 ABC transporter RAM_RS09855 PF00448 SRP54-type protein, GTPase domain RAM_RS09855 PF02881 SRP54-type protein, helical bundle domain RAM_RS09855 PF02978 Signal peptide binding domain RAM_RS09860 PF01979 Amidohydrolase family RAM_RS09875 PF00886 Ribosomal protein S16 RAM_RS09885 PF01782 RimM N-terminal domain RAM_RS09885 PF05239 PRC-barrel domain RAM_RS09895 PF01746 tRNA (Guanine-1)-methyltransferase RAM_RS09900 PF01245 Ribosomal protein L19 RAM_RS09905 PF10502 Signal peptidase, peptidase S26 RAM_RS09910 PF01351 Ribonuclease HII RAM_RS09915 PF10611 Protein of unknown function (DUF2469) RAM_RS09920 PF02021 Uncharacterised protein family UPF0102 RAM_RS09925 PF13335 Magnesium chelatase, subunit ChlI C-terminal RAM_RS09925 PF01078 Magnesium chelatase, subunit ChlI RAM_RS09935 PF02481 DNA recombination-mediator protein A RAM_RS09935 PF17782 DprA winged helix domain RAM_RS09940 PF00589 Phage integrase family RAM_RS09940 PF02899 Phage integrase, N-terminal SAM-like domain RAM_RS09945 PF04539 Sigma-70 region 3 RAM_RS09945 PF04542 Sigma-70 region 2 RAM_RS09945 PF04545 Sigma-70, region 4 RAM_RS09950 PF01551 Peptidase family M23 RAM_RS09955 PF00318 Ribosomal protein S2 RAM_RS09960 PF00889 Elongation factor TS RAM_RS09965 PF00696 Amino acid kinase family RAM_RS09970 PF01765 Ribosome recycling factor RAM_RS09985 PF03551 Transcriptional regulator PadR-like family RAM_RS09985 PF13847 Methyltransferase domain RAM_RS09990 PF03551 Transcriptional regulator PadR-like family RAM_RS09995 PF01032 FecCD transport family RAM_RS10005 PF00005 ABC transporter RAM_RS10010 PF01497 Periplasmic binding protein RAM_RS10015 PF02779 Transketolase, pyrimidine binding domain RAM_RS10015 PF00456 Transketolase, thiamine diphosphate binding domain RAM_RS10015 PF02780 Transketolase, C-terminal domain RAM_RS10025 PF04055 Radical SAM superfamily RAM_RS10035 PF05593 RHS Repeat RAM_RS10050 PF02633 Creatinine amidohydrolase RAM_RS10055 PF01565 FAD binding domain RAM_RS10055 PF02913 FAD linked oxidases, C-terminal domain RAM_RS10070 PF00005 ABC transporter RAM_RS10075 PF07969 Amidohydrolase family RAM_RS10085 PF00970 Oxidoreductase FAD-binding domain RAM_RS10085 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS10090 PF01979 Amidohydrolase family RAM_RS10120 PF01568 Molydopterin dinucleotide binding domain RAM_RS10120 PF00384 Molybdopterin oxidoreductase RAM_RS10130 PF13411 MerR HTH family regulatory protein RAM_RS10135 PF07690 Major Facilitator Superfamily RAM_RS10150 PF03795 YCII-related domain RAM_RS10155 PF13460 NAD(P)H-binding RAM_RS10165 PF00698 Acyl transferase domain RAM_RS10165 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS10165 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS10165 PF08990 Erythronolide synthase docking RAM_RS10165 PF08659 KR domain RAM_RS10165 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS10165 PF00550 Phosphopantetheine attachment site RAM_RS10165 PF14765 Polyketide synthase dehydratase RAM_RS10165 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS10170 PF01381 Helix-turn-helix RAM_RS10180 PF03795 YCII-related domain RAM_RS10185 PF04542 Sigma-70 region 2 RAM_RS10185 PF08281 Sigma-70, region 4 RAM_RS10190 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS10200 PF03960 ArsC family RAM_RS10205 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS10220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS10220 PF03466 LysR substrate binding domain RAM_RS10225 PF00067 Cytochrome P450 RAM_RS10230 PF00561 alpha/beta hydrolase fold RAM_RS10235 PF00931 NB-ARC domain RAM_RS10235 PF00486 Transcriptional regulatory protein, C terminal RAM_RS10235 PF03704 Bacterial transcriptional activator domain RAM_RS10240 PF13847 Methyltransferase domain RAM_RS10245 PF00155 Aminotransferase class I and II RAM_RS10245 PF00392 Bacterial regulatory proteins, gntR family RAM_RS10250 PF07690 Major Facilitator Superfamily RAM_RS10255 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_RS10265 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RAM_RS10265 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RAM_RS10265 PF13288 DXP reductoisomerase C-terminal domain RAM_RS10270 PF02163 Peptidase family M50 RAM_RS10270 PF17820 PDZ domain RAM_RS10275 PF04551 GcpE protein RAM_RS10305 PF00583 Acetyltransferase (GNAT) family RAM_RS10310 PF00905 Penicillin binding protein transpeptidase domain RAM_RS10315 PF00557 Metallopeptidase family M24 RAM_RS10320 PF01061 ABC-2 type transporter RAM_RS10325 PF13732 Domain of unknown function (DUF4162) RAM_RS10325 PF00005 ABC transporter RAM_RS10340 PF00392 Bacterial regulatory proteins, gntR family RAM_RS10340 PF07729 FCD domain RAM_RS10350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_RS10350 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS10360 PF00089 Trypsin RAM_RS10365 PF13673 Acetyltransferase (GNAT) domain RAM_RS10370 PF00155 Aminotransferase class I and II RAM_RS10375 PF00270 DEAD/DEAH box helicase RAM_RS10375 PF00271 Helicase conserved C-terminal domain RAM_RS10410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS10410 PF03466 LysR substrate binding domain RAM_RS10420 PF01266 FAD dependent oxidoreductase RAM_RS10425 PF03883 Peroxide stress protein YaaA RAM_RS10445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_RS10450 PF09594 Glycosyltransferase family 87 RAM_RS10460 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_RS10460 PF04073 Aminoacyl-tRNA editing domain RAM_RS10460 PF03129 Anticodon binding domain RAM_RS10475 PF09924 Uncharacterised conserved protein (DUF2156) RAM_RS10505 PF01894 Uncharacterised protein family UPF0047 RAM_RS10510 PF00072 Response regulator receiver domain RAM_RS10510 PF00196 Bacterial regulatory proteins, luxR family RAM_RS10525 PF00487 Fatty acid desaturase RAM_RS10530 PF00175 Oxidoreductase NAD-binding domain RAM_RS10530 PF00042 Globin RAM_RS10530 PF00970 Oxidoreductase FAD-binding domain RAM_RS10535 PF00440 Bacterial regulatory proteins, tetR family RAM_RS10540 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAM_RS10540 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RAM_RS10545 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RAM_RS10550 PF02233 NAD(P) transhydrogenase beta subunit RAM_RS10565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_RS10565 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS10585 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS10585 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS10590 PF00550 Phosphopantetheine attachment site RAM_RS10595 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_RS10595 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_RS10600 PF00698 Acyl transferase domain RAM_RS10610 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS10610 PF17853 GGDEF-like domain RAM_RS10615 PF00005 ABC transporter RAM_RS10615 PF13732 Domain of unknown function (DUF4162) RAM_RS10630 PF04973 Nicotinamide mononucleotide transporter RAM_RS10635 PF02652 L-lactate permease RAM_RS10650 PF01070 FMN-dependent dehydrogenase RAM_RS10655 PF00456 Transketolase, thiamine diphosphate binding domain RAM_RS10655 PF17831 Pyruvate dehydrogenase E1 component middle domain RAM_RS10660 PF11253 Protein of unknown function (DUF3052) RAM_RS10665 PF00578 AhpC/TSA family RAM_RS10690 PF01555 DNA methylase RAM_RS10770 PF12697 Alpha/beta hydrolase family RAM_RS10780 PF00899 ThiF family RAM_RS10810 PF07690 Major Facilitator Superfamily RAM_RS10830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS10830 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS10830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS10835 PF00106 short chain dehydrogenase RAM_RS10840 PF00266 Aminotransferase class-V RAM_RS10845 PF07729 FCD domain RAM_RS10845 PF00392 Bacterial regulatory proteins, gntR family RAM_RS10850 PF00149 Calcineurin-like phosphoesterase RAM_RS10860 PF00206 Lyase RAM_RS10860 PF10415 Fumarase C C-terminus RAM_RS10870 PF00324 Amino acid permease RAM_RS10875 PF07729 FCD domain RAM_RS10875 PF00392 Bacterial regulatory proteins, gntR family RAM_RS10880 PF01336 OB-fold nucleic acid binding domain RAM_RS10880 PF07733 Bacterial DNA polymerase III alpha NTPase domain RAM_RS10880 PF02811 PHP domain RAM_RS10880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RAM_RS10880 PF14579 Helix-hairpin-helix motif RAM_RS10885 PF07690 Major Facilitator Superfamily RAM_RS10910 PF17964 Bacterial Ig domain RAM_RS10910 PF03734 L,D-transpeptidase catalytic domain RAM_RS10920 PF09335 SNARE associated Golgi protein RAM_RS10925 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RAM_RS10925 PF04055 Radical SAM superfamily RAM_RS10930 PF00106 short chain dehydrogenase RAM_RS10940 PF00440 Bacterial regulatory proteins, tetR family RAM_RS10950 PF03099 Biotin/lipoate A/B protein ligase family RAM_RS10960 PF01370 NAD dependent epimerase/dehydratase family RAM_RS10960 PF08338 Domain of unknown function (DUF1731) RAM_RS10965 PF02817 e3 binding domain RAM_RS10965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_RS10965 PF00364 Biotin-requiring enzyme RAM_RS10970 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS10970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_RS11000 PF02789 Cytosol aminopeptidase family, N-terminal domain RAM_RS11000 PF00883 Cytosol aminopeptidase family, catalytic domain RAM_RS11020 PF01063 Amino-transferase class IV RAM_RS11025 PF02277 Phosphoribosyltransferase RAM_RS11030 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RAM_RS11030 PF02542 YgbB family RAM_RS11045 PF01259 SAICAR synthetase RAM_RS11050 PF00248 Aldo/keto reductase family RAM_RS11060 PF11241 Protein of unknown function (DUF3043) RAM_RS11065 PF01521 Iron-sulphur cluster biosynthesis RAM_RS11070 PF00294 pfkB family carbohydrate kinase RAM_RS11075 PF00733 Asparagine synthase RAM_RS11075 PF13537 Glutamine amidotransferase domain RAM_RS11080 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RAM_RS11085 PF12270 Cytochrome c oxidase subunit IV RAM_RS11090 PF01965 DJ-1/PfpI family RAM_RS11090 PF12833 Helix-turn-helix domain RAM_RS11100 PF00591 Glycosyl transferase family, a/b domain RAM_RS11100 PF02885 Glycosyl transferase family, helical bundle domain RAM_RS11115 PF00510 Cytochrome c oxidase subunit III RAM_RS11120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RAM_RS11120 PF00034 Cytochrome c RAM_RS11125 PF00355 Rieske [2Fe-2S] domain RAM_RS11130 PF13631 Cytochrome b(N-terminal)/b6/petB RAM_RS11145 PF01541 GIY-YIG catalytic domain RAM_RS11145 PF00929 Exonuclease RAM_RS11160 PF00877 NlpC/P60 family RAM_RS11165 PF00534 Glycosyl transferases group 1 RAM_RS11165 PF13439 Glycosyltransferase Family 4 RAM_RS11180 PF00067 Cytochrome P450 RAM_RS11185 PF00202 Aminotransferase class-III RAM_RS11190 PF00916 Sulfate permease family RAM_RS11190 PF01740 STAS domain RAM_RS11195 PF01740 STAS domain RAM_RS11195 PF00916 Sulfate permease family RAM_RS11205 PF06968 Biotin and Thiamin Synthesis associated domain RAM_RS11205 PF04055 Radical SAM superfamily RAM_RS11220 PF01435 Peptidase family M48 RAM_RS11225 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS11225 PF05362 Lon protease (S16) C-terminal proteolytic domain RAM_RS11225 PF02190 ATP-dependent protease La (LON) substrate-binding domain RAM_RS11235 PF02445 Quinolinate synthetase A protein RAM_RS11240 PF02910 Fumarate reductase flavoprotein C-term RAM_RS11240 PF00890 FAD binding domain RAM_RS11245 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RAM_RS11245 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RAM_RS11250 PF00082 Subtilase family RAM_RS11290 PF00501 AMP-binding enzyme RAM_RS11290 PF13193 AMP-binding enzyme C-terminal domain RAM_RS11310 PF01580 FtsK/SpoIIIE family RAM_RS11335 PF02575 YbaB/EbfC DNA-binding family RAM_RS11345 PF17189 Glycosyl hydrolase family 30 beta sandwich domain RAM_RS11355 PF05108 Type VII secretion system ESX-1, transport TM domain B RAM_RS11360 PF00072 Response regulator receiver domain RAM_RS11360 PF00196 Bacterial regulatory proteins, luxR family RAM_RS11365 PF00196 Bacterial regulatory proteins, luxR family RAM_RS11365 PF00072 Response regulator receiver domain RAM_RS11370 PF00795 Carbon-nitrogen hydrolase RAM_RS11375 PF00815 Histidinol dehydrogenase RAM_RS11380 PF00155 Aminotransferase class I and II RAM_RS11385 PF00475 Imidazoleglycerol-phosphate dehydratase RAM_RS11390 PF12706 Beta-lactamase superfamily domain RAM_RS11400 PF00561 alpha/beta hydrolase fold RAM_RS11405 PF03176 MMPL family RAM_RS11410 PF08361 MAATS-type transcriptional repressor, C-terminal region RAM_RS11410 PF00440 Bacterial regulatory proteins, tetR family RAM_RS11415 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family RAM_RS11420 PF00376 MerR family regulatory protein RAM_RS11420 PF09278 MerR, DNA binding RAM_RS11425 PF00456 Transketolase, thiamine diphosphate binding domain RAM_RS11430 PF02779 Transketolase, pyrimidine binding domain RAM_RS11435 PF00293 NUDIX domain RAM_RS11445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS11445 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS11445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS11455 PF00117 Glutamine amidotransferase class-I RAM_RS11460 PF00977 Histidine biosynthesis protein RAM_RS11510 PF04542 Sigma-70 region 2 RAM_RS11510 PF04545 Sigma-70, region 4 RAM_RS11510 PF04539 Sigma-70 region 3 RAM_RS11515 PF02333 Phytase RAM_RS11520 PF00977 Histidine biosynthesis protein RAM_RS11530 PF01502 Phosphoribosyl-AMP cyclohydrolase RAM_RS11565 PF04715 Anthranilate synthase component I, N terminal region RAM_RS11565 PF00425 chorismate binding enzyme RAM_RS11575 PF00218 Indole-3-glycerol phosphate synthase RAM_RS11580 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS11585 PF00290 Tryptophan synthase alpha chain RAM_RS11590 PF13411 MerR HTH family regulatory protein RAM_RS11610 PF00120 Glutamine synthetase, catalytic domain RAM_RS11610 PF03951 Glutamine synthetase, beta-Grasp domain RAM_RS11625 PF07687 Peptidase dimerisation domain RAM_RS11625 PF01546 Peptidase family M20/M25/M40 RAM_RS11630 PF01790 Prolipoprotein diacylglyceryl transferase RAM_RS11640 PF04898 Glutamate synthase central domain RAM_RS11640 PF01645 Conserved region in glutamate synthase RAM_RS11640 PF00310 Glutamine amidotransferases class-II RAM_RS11640 PF01493 GXGXG motif RAM_RS11645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RAM_RS11645 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS11660 PF00561 alpha/beta hydrolase fold RAM_RS11665 PF01474 Class-II DAHP synthetase family RAM_RS11680 PF06974 Protein of unknown function (DUF1298) RAM_RS11680 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RAM_RS11690 PF15975 Flotillin RAM_RS11690 PF01145 SPFH domain / Band 7 family RAM_RS11700 PF00069 Protein kinase domain RAM_RS11700 PF03793 PASTA domain RAM_RS11715 PF00296 Luciferase-like monooxygenase RAM_RS11725 PF01593 Flavin containing amine oxidoreductase RAM_RS11730 PF00348 Polyprenyl synthetase RAM_RS11740 PF02219 Methylenetetrahydrofolate reductase RAM_RS11785 PF01327 Polypeptide deformylase RAM_RS11790 PF00271 Helicase conserved C-terminal domain RAM_RS11790 PF00270 DEAD/DEAH box helicase RAM_RS11790 PF08494 DEAD/H associated RAM_RS11795 PF08220 DeoR-like helix-turn-helix domain RAM_RS11795 PF00455 DeoR C terminal sensor domain RAM_RS11800 PF07690 Major Facilitator Superfamily RAM_RS11805 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RAM_RS11815 PF00012 Hsp70 protein RAM_RS11825 PF00154 recA bacterial DNA recombination protein RAM_RS11830 PF02631 RecX family RAM_RS11850 PF01081 KDPG and KHG aldolase RAM_RS11855 PF00920 Dehydratase family RAM_RS11870 PF00890 FAD binding domain RAM_RS11870 PF02910 Fumarate reductase flavoprotein C-term RAM_RS11875 PF13183 4Fe-4S dicluster domain RAM_RS11875 PF13085 2Fe-2S iron-sulfur cluster binding domain RAM_RS11905 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS11910 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS11915 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_RS11920 PF00005 ABC transporter RAM_RS11925 PF00072 Response regulator receiver domain RAM_RS11925 PF00486 Transcriptional regulatory protein, C terminal RAM_RS11930 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS11930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS11930 PF00672 HAMP domain RAM_RS11940 PF01638 HxlR-like helix-turn-helix RAM_RS11960 PF03372 Endonuclease/Exonuclease/phosphatase family RAM_RS11990 PF01494 FAD binding domain RAM_RS11995 PF00440 Bacterial regulatory proteins, tetR family RAM_RS11995 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_RS12000 PF01494 FAD binding domain RAM_RS12005 PF00919 Uncharacterized protein family UPF0004 RAM_RS12005 PF04055 Radical SAM superfamily RAM_RS12010 PF00919 Uncharacterized protein family UPF0004 RAM_RS12010 PF04055 Radical SAM superfamily RAM_RS12020 PF03993 Domain of Unknown Function (DUF349) RAM_RS12030 PF01678 Diaminopimelate epimerase RAM_RS12035 PF00133 tRNA synthetases class I (I, L, M and V) RAM_RS12035 PF08264 Anticodon-binding domain of tRNA RAM_RS12050 PF16360 GTP-binding GTPase Middle Region RAM_RS12050 PF13167 GTP-binding GTPase N-terminal RAM_RS12050 PF01926 50S ribosome-binding GTPase RAM_RS12060 PF00717 Peptidase S24-like RAM_RS12060 PF01726 LexA DNA binding domain RAM_RS12070 PF03477 ATP cone domain RAM_RS12075 PF08471 Class II vitamin B12-dependent ribonucleotide reductase RAM_RS12075 PF02867 Ribonucleotide reductase, barrel domain RAM_RS12095 PF02525 Flavodoxin-like fold RAM_RS12105 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RAM_RS12105 PF00326 Prolyl oligopeptidase family RAM_RS12120 PF00155 Aminotransferase class I and II RAM_RS12120 PF00392 Bacterial regulatory proteins, gntR family RAM_RS12140 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_RS12140 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS12145 PF02698 DUF218 domain RAM_RS12150 PF01565 FAD binding domain RAM_RS12150 PF08031 Berberine and berberine like RAM_RS12155 PF00196 Bacterial regulatory proteins, luxR family RAM_RS12155 PF00072 Response regulator receiver domain RAM_RS12160 PF07730 Histidine kinase RAM_RS12175 PF01370 NAD dependent epimerase/dehydratase family RAM_RS12180 PF08544 GHMP kinases C terminal RAM_RS12180 PF10509 Galactokinase galactose-binding signature RAM_RS12180 PF00288 GHMP kinases N terminal domain RAM_RS12185 PF18357 Diphteria toxin repressor SH3 domain RAM_RS12185 PF02742 Iron dependent repressor, metal binding and dimerisation domain RAM_RS12185 PF01325 Iron dependent repressor, N-terminal DNA binding domain RAM_RS12190 PF00581 Rhodanese-like domain RAM_RS12195 PF00850 Histone deacetylase domain RAM_RS12205 PF00144 Beta-lactamase RAM_RS12210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS12210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS12215 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS12215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS12215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS12235 PF02405 Permease MlaE RAM_RS12240 PF02405 Permease MlaE RAM_RS12290 PF12897 Alanine-glyoxylate amino-transferase RAM_RS12300 PF01494 FAD binding domain RAM_RS12305 PF00356 Bacterial regulatory proteins, lacI family RAM_RS12315 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS12320 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS12325 PF00232 Glycosyl hydrolase family 1 RAM_RS12330 PF00501 AMP-binding enzyme RAM_RS12350 PF02374 Anion-transporting ATPase RAM_RS12350 PF17886 HSP20-like domain found in ArsA RAM_RS12360 PF00480 ROK family RAM_RS12375 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_RS12385 PF12146 Serine aminopeptidase, S33 RAM_RS12390 PF01553 Acyltransferase RAM_RS12395 PF16473 3' exoribonuclease, RNase T-like RAM_RS12400 PF00793 DAHP synthetase I family RAM_RS12405 PF00365 Phosphofructokinase RAM_RS12415 PF04542 Sigma-70 region 2 RAM_RS12415 PF08281 Sigma-70, region 4 RAM_RS12420 PF00221 Aromatic amino acid lyase RAM_RS12430 PF01638 HxlR-like helix-turn-helix RAM_RS12435 PF01022 Bacterial regulatory protein, arsR family RAM_RS12440 PF00553 Cellulose binding domain RAM_RS12440 PF00704 Glycosyl hydrolases family 18 RAM_RS12440 PF00041 Fibronectin type III domain RAM_RS12450 PF00224 Pyruvate kinase, barrel domain RAM_RS12450 PF02887 Pyruvate kinase, alpha/beta domain RAM_RS12475 PF00196 Bacterial regulatory proteins, luxR family RAM_RS12475 PF00072 Response regulator receiver domain RAM_RS12480 PF00171 Aldehyde dehydrogenase family RAM_RS12490 PF00440 Bacterial regulatory proteins, tetR family RAM_RS12495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS12495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS12495 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS12500 PF02515 CoA-transferase family III RAM_RS12510 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS12535 PF07690 Major Facilitator Superfamily RAM_RS12540 PF00440 Bacterial regulatory proteins, tetR family RAM_RS12545 PF00474 Sodium:solute symporter family RAM_RS12560 PF03259 Roadblock/LC7 domain RAM_RS12590 PF01642 Methylmalonyl-CoA mutase RAM_RS12590 PF02310 B12 binding domain RAM_RS12595 PF13847 Methyltransferase domain RAM_RS12600 PF00296 Luciferase-like monooxygenase RAM_RS12605 PF17925 Tetracyclin repressor-like, C-terminal domain RAM_RS12605 PF00440 Bacterial regulatory proteins, tetR family RAM_RS12610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS12610 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS12610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS12615 PF00271 Helicase conserved C-terminal domain RAM_RS12615 PF00176 SNF2 family N-terminal domain RAM_RS12615 PF12419 SNF2 Helicase protein RAM_RS12625 PF07859 alpha/beta hydrolase fold RAM_RS12630 PF06974 Protein of unknown function (DUF1298) RAM_RS12630 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RAM_RS12635 PF04075 F420H(2)-dependent quinone reductase RAM_RS12640 PF00561 alpha/beta hydrolase fold RAM_RS12645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS12645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS12650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS12650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS12650 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS12655 PF13452 N-terminal half of MaoC dehydratase RAM_RS12675 PF06574 FAD synthetase RAM_RS12675 PF01687 Riboflavin kinase RAM_RS12680 PF01575 MaoC like domain RAM_RS12685 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS12685 PF00970 Oxidoreductase FAD-binding domain RAM_RS12685 PF00175 Oxidoreductase NAD-binding domain RAM_RS12695 PF00355 Rieske [2Fe-2S] domain RAM_RS12700 PF00890 FAD binding domain RAM_RS12705 PF00890 FAD binding domain RAM_RS12710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS12710 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS12715 PF12697 Alpha/beta hydrolase family RAM_RS12720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_RS12725 PF01613 Flavin reductase like domain RAM_RS12740 PF12706 Beta-lactamase superfamily domain RAM_RS12745 PF00487 Fatty acid desaturase RAM_RS12750 PF17760 UvrA interaction domain RAM_RS12750 PF00005 ABC transporter RAM_RS12750 PF17755 UvrA DNA-binding domain RAM_RS12770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS12770 PF03466 LysR substrate binding domain RAM_RS12775 PF07690 Major Facilitator Superfamily RAM_RS12780 PF14759 Reductase C-terminal RAM_RS12780 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS12805 PF04542 Sigma-70 region 2 RAM_RS12805 PF04545 Sigma-70, region 4 RAM_RS12830 PF01546 Peptidase family M20/M25/M40 RAM_RS12830 PF07687 Peptidase dimerisation domain RAM_RS12840 PF01979 Amidohydrolase family RAM_RS12845 PF00561 alpha/beta hydrolase fold RAM_RS12850 PF00108 Thiolase, N-terminal domain RAM_RS12850 PF02803 Thiolase, C-terminal domain RAM_RS12855 PF00067 Cytochrome P450 RAM_RS12870 PF03631 Virulence factor BrkB RAM_RS12890 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS12895 PF13193 AMP-binding enzyme C-terminal domain RAM_RS12895 PF00501 AMP-binding enzyme RAM_RS12900 PF03060 Nitronate monooxygenase RAM_RS12905 PF00089 Trypsin RAM_RS12910 PF13520 Amino acid permease RAM_RS12915 PF07702 UTRA domain RAM_RS12915 PF00392 Bacterial regulatory proteins, gntR family RAM_RS12935 PF05683 Fumarase C-terminus RAM_RS12935 PF05681 Fumarate hydratase (Fumerase) RAM_RS12940 PF04545 Sigma-70, region 4 RAM_RS12940 PF00140 Sigma-70 factor, region 1.2 RAM_RS12940 PF04542 Sigma-70 region 2 RAM_RS12940 PF04539 Sigma-70 region 3 RAM_RS12945 PF02580 D-Tyr-tRNA(Tyr) deacylase RAM_RS12950 PF05175 Methyltransferase small domain RAM_RS12950 PF17827 PrmC N-terminal domain RAM_RS12955 PF07687 Peptidase dimerisation domain RAM_RS12955 PF01546 Peptidase family M20/M25/M40 RAM_RS12965 PF00294 pfkB family carbohydrate kinase RAM_RS12970 PF04227 Indigoidine synthase A like protein RAM_RS12995 PF00873 AcrB/AcrD/AcrF family RAM_RS13005 PF04851 Type III restriction enzyme, res subunit RAM_RS13010 PF13407 Periplasmic binding protein domain RAM_RS13015 PF00005 ABC transporter RAM_RS13020 PF02653 Branched-chain amino acid transport system / permease component RAM_RS13040 PF03951 Glutamine synthetase, beta-Grasp domain RAM_RS13040 PF00120 Glutamine synthetase, catalytic domain RAM_RS13050 PF13520 Amino acid permease RAM_RS13055 PF02446 4-alpha-glucanotransferase RAM_RS13060 PF00128 Alpha amylase, catalytic domain RAM_RS13060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_RS13065 PF00128 Alpha amylase, catalytic domain RAM_RS13070 PF00128 Alpha amylase, catalytic domain RAM_RS13070 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_RS13075 PF00128 Alpha amylase, catalytic domain RAM_RS13075 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_RS13080 PF11896 Domain of unknown function (DUF3416) RAM_RS13080 PF00128 Alpha amylase, catalytic domain RAM_RS13085 PF16657 Maltogenic Amylase, C-terminal domain RAM_RS13085 PF00128 Alpha amylase, catalytic domain RAM_RS13090 PF18085 Maltokinase N-terminal cap domain RAM_RS13095 PF00128 Alpha amylase, catalytic domain RAM_RS13095 PF02806 Alpha amylase, C-terminal all-beta domain RAM_RS13095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_RS13105 PF04545 Sigma-70, region 4 RAM_RS13105 PF04542 Sigma-70 region 2 RAM_RS13105 PF04539 Sigma-70 region 3 RAM_RS13105 PF00140 Sigma-70 factor, region 1.2 RAM_RS13110 PF00480 ROK family RAM_RS13115 PF00459 Inositol monophosphatase family RAM_RS13135 PF00692 dUTPase RAM_RS13160 PF02254 TrkA-N domain RAM_RS13160 PF02080 TrkA-C domain RAM_RS13165 PF02254 TrkA-N domain RAM_RS13165 PF02080 TrkA-C domain RAM_RS13170 PF13520 Amino acid permease RAM_RS13175 PF01938 TRAM domain RAM_RS13175 PF05958 tRNA (Uracil-5-)-methyltransferase RAM_RS13185 PF00171 Aldehyde dehydrogenase family RAM_RS13190 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RAM_RS13190 PF02779 Transketolase, pyrimidine binding domain RAM_RS13190 PF02780 Transketolase, C-terminal domain RAM_RS13195 PF00356 Bacterial regulatory proteins, lacI family RAM_RS13205 PF00171 Aldehyde dehydrogenase family RAM_RS13210 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS13210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS13210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS13215 PF00491 Arginase family RAM_RS13225 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS13230 PF00072 Response regulator receiver domain RAM_RS13230 PF00486 Transcriptional regulatory protein, C terminal RAM_RS13235 PF00672 HAMP domain RAM_RS13235 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS13235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS13240 PF07859 alpha/beta hydrolase fold RAM_RS13255 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS13255 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS13255 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS13260 PF00108 Thiolase, N-terminal domain RAM_RS13260 PF02803 Thiolase, C-terminal domain RAM_RS13275 PF01425 Amidase RAM_RS13295 PF13520 Amino acid permease RAM_RS13300 PF00440 Bacterial regulatory proteins, tetR family RAM_RS13300 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_RS13310 PF00072 Response regulator receiver domain RAM_RS13310 PF00196 Bacterial regulatory proteins, luxR family RAM_RS13320 PF01208 Uroporphyrinogen decarboxylase (URO-D) RAM_RS13325 PF01593 Flavin containing amine oxidoreductase RAM_RS13330 PF06778 Chlorite dismutase RAM_RS13335 PF02515 CoA-transferase family III RAM_RS13345 PF05114 Protein of unknown function (DUF692) RAM_RS13360 PF01641 SelR domain RAM_RS13370 PF00069 Protein kinase domain RAM_RS13370 PF03793 PASTA domain RAM_RS13375 PF09335 SNARE associated Golgi protein RAM_RS13380 PF13298 DNA polymerase Ligase (LigD) RAM_RS13380 PF04679 ATP dependent DNA ligase C terminal region RAM_RS13380 PF01068 ATP dependent DNA ligase domain RAM_RS13390 PF00296 Luciferase-like monooxygenase RAM_RS13395 PF00575 S1 RNA binding domain RAM_RS13405 PF17853 GGDEF-like domain RAM_RS13405 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS13405 PF06018 CodY GAF-like domain RAM_RS13410 PF00171 Aldehyde dehydrogenase family RAM_RS13420 PF00085 Thioredoxin RAM_RS13425 PF10944 Protein of unknown function (DUF2630) RAM_RS13430 PF03795 YCII-related domain RAM_RS13440 PF08281 Sigma-70, region 4 RAM_RS13440 PF04542 Sigma-70 region 2 RAM_RS13450 PF04679 ATP dependent DNA ligase C terminal region RAM_RS13450 PF01068 ATP dependent DNA ligase domain RAM_RS13475 PF03780 Asp23 family, cell envelope-related function RAM_RS13485 PF08281 Sigma-70, region 4 RAM_RS13485 PF04542 Sigma-70 region 2 RAM_RS13505 PF01266 FAD dependent oxidoreductase RAM_RS13510 PF08533 Beta-galactosidase C-terminal domain RAM_RS13510 PF02449 Beta-galactosidase RAM_RS13510 PF08532 Beta-galactosidase trimerisation domain RAM_RS13520 PF00202 Aminotransferase class-III RAM_RS13525 PF01022 Bacterial regulatory protein, arsR family RAM_RS13535 PF03976 Polyphosphate kinase 2 (PPK2) RAM_RS13540 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region RAM_RS13540 PF00326 Prolyl oligopeptidase family RAM_RS13550 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RAM_RS13555 PF02641 Uncharacterized ACR, COG1993 RAM_RS13560 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RAM_RS13565 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_RS13570 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RAM_RS13575 PF04183 IucA / IucC family RAM_RS13575 PF06276 Ferric iron reductase FhuF-like transporter RAM_RS13580 PF00120 Glutamine synthetase, catalytic domain RAM_RS13585 PF08031 Berberine and berberine like RAM_RS13585 PF01565 FAD binding domain RAM_RS13590 PF13191 AAA ATPase domain RAM_RS13590 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_RS13595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_RS13595 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS13605 PF04055 Radical SAM superfamily RAM_RS13605 PF04055 Radical SAM superfamily RAM_RS13615 PF02938 GAD domain RAM_RS13615 PF01336 OB-fold nucleic acid binding domain RAM_RS13615 PF00152 tRNA synthetases class II (D, K and N) RAM_RS13640 PF00067 Cytochrome P450 RAM_RS13645 PF00440 Bacterial regulatory proteins, tetR family RAM_RS13650 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS13650 PF12002 MgsA AAA+ ATPase C terminal RAM_RS13650 PF16193 AAA C-terminal domain RAM_RS13660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_RS13660 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_RS13675 PF02272 DHHA1 domain RAM_RS13675 PF01411 tRNA synthetases class II (A) RAM_RS13675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RAM_RS13680 PF03652 Holliday junction resolvase RAM_RS13685 PF02618 YceG-like family RAM_RS13690 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RAM_RS13690 PF01488 Shikimate / quinate 5-dehydrogenase RAM_RS13690 PF08501 Shikimate dehydrogenase substrate binding domain RAM_RS13695 PF04229 GrpB protein RAM_RS13700 PF00440 Bacterial regulatory proteins, tetR family RAM_RS13700 PF16295 Tetracyclin repressor-like, C-terminal domain RAM_RS13710 PF12146 Serine aminopeptidase, S33 RAM_RS13710 PF13026 Protein of unknown function (DUF3887) RAM_RS13720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_RS13720 PF01842 ACT domain RAM_RS13720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_RS13730 PF00381 PTS HPr component phosphorylation site RAM_RS13735 PF02378 Phosphotransferase system, EIIC RAM_RS13740 PF07702 UTRA domain RAM_RS13740 PF00392 Bacterial regulatory proteins, gntR family RAM_RS13745 PF00367 phosphotransferase system, EIIB RAM_RS13750 PF02378 Phosphotransferase system, EIIC RAM_RS13750 PF00367 phosphotransferase system, EIIB RAM_RS13750 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RAM_RS13765 PF04542 Sigma-70 region 2 RAM_RS13765 PF04545 Sigma-70, region 4 RAM_RS13775 PF01264 Chorismate synthase RAM_RS13780 PF01202 Shikimate kinase RAM_RS13785 PF01761 3-dehydroquinate synthase RAM_RS13790 PF01220 Dehydroquinase class II RAM_RS13810 PF01321 Creatinase/Prolidase N-terminal domain RAM_RS13810 PF00557 Metallopeptidase family M24 RAM_RS13815 PF01132 Elongation factor P (EF-P) OB domain RAM_RS13815 PF08207 Elongation factor P (EF-P) KOW-like domain RAM_RS13815 PF09285 Elongation factor P, C-terminal RAM_RS13820 PF01029 NusB family RAM_RS13835 PF00156 Phosphoribosyl transferase domain RAM_RS13840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RAM_RS13840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RAM_RS13845 PF01979 Amidohydrolase family RAM_RS13855 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RAM_RS13855 PF00117 Glutamine amidotransferase class-I RAM_RS13860 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system RAM_RS13870 PF02142 MGS-like domain RAM_RS13870 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RAM_RS13870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_RS13875 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RAM_RS13885 PF00625 Guanylate kinase RAM_RS13890 PF01192 RNA polymerase Rpb6 RAM_RS13895 PF04127 DNA / pantothenate metabolism flavoprotein RAM_RS13895 PF02441 Flavoprotein RAM_RS13900 PF02772 S-adenosylmethionine synthetase, central domain RAM_RS13900 PF02773 S-adenosylmethionine synthetase, C-terminal domain RAM_RS13900 PF00438 S-adenosylmethionine synthetase, N-terminal domain RAM_RS13905 PF17764 3′ DNA-binding domain (3′BD) RAM_RS13930 PF02911 Formyl transferase, C-terminal domain RAM_RS13930 PF00551 Formyl transferase RAM_RS13935 PF01189 16S rRNA methyltransferase RsmB/F RAM_RS13935 PF01029 NusB family RAM_RS13940 PF04127 DNA / pantothenate metabolism flavoprotein RAM_RS13940 PF02441 Flavoprotein RAM_RS13945 PF00144 Beta-lactamase RAM_RS13950 PF00245 Alkaline phosphatase RAM_RS13955 PF00196 Bacterial regulatory proteins, luxR family RAM_RS13955 PF00072 Response regulator receiver domain RAM_RS13960 PF07730 Histidine kinase RAM_RS13965 PF00834 Ribulose-phosphate 3 epimerase family RAM_RS13970 PF00677 Lumazine binding domain RAM_RS13975 PF00925 GTP cyclohydrolase II RAM_RS13975 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RAM_RS13980 PF00885 6,7-dimethyl-8-ribityllumazine synthase RAM_RS13985 PF10756 Bacterial PH domain RAM_RS14000 PF01541 GIY-YIG catalytic domain RAM_RS14000 PF08459 UvrC Helix-hairpin-helix N-terminal RAM_RS14000 PF02151 UvrB/uvrC motif RAM_RS14005 PF03668 P-loop ATPase protein family RAM_RS14010 PF01933 Uncharacterised protein family UPF0052 RAM_RS14015 PF10298 WhiA N-terminal LAGLIDADG-like domain RAM_RS14015 PF02650 WhiA C-terminal HTH domain RAM_RS14015 PF14527 WhiA LAGLIDADG-like domain RAM_RS14020 PF00535 Glycosyl transferase family 2 RAM_RS14025 PF04116 Fatty acid hydroxylase superfamily RAM_RS14045 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_RS14045 PF16990 Carbohydrate binding module (family 35) RAM_RS14045 PF00703 Glycosyl hydrolases family 2 RAM_RS14045 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS14050 PF01218 Coproporphyrinogen III oxidase RAM_RS14090 PF01810 LysE type translocator RAM_RS14100 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RAM_RS14100 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RAM_RS14105 PF00162 Phosphoglycerate kinase RAM_RS14110 PF00121 Triosephosphate isomerase RAM_RS14115 PF03840 Preprotein translocase SecG subunit RAM_RS14125 PF07730 Histidine kinase RAM_RS14125 PF17200 Single Cache domain 2 RAM_RS14130 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RAM_RS14140 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RAM_RS14140 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RAM_RS14145 PF00342 Phosphoglucose isomerase RAM_RS14150 PF00923 Transaldolase/Fructose-6-phosphate aldolase RAM_RS14155 PF00456 Transketolase, thiamine diphosphate binding domain RAM_RS14155 PF02779 Transketolase, pyrimidine binding domain RAM_RS14155 PF02780 Transketolase, C-terminal domain RAM_RS14160 PF01040 UbiA prenyltransferase family RAM_RS14195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAM_RS14200 PF00107 Zinc-binding dehydrogenase RAM_RS14200 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS14240 PF00005 ABC transporter RAM_RS14240 PF13732 Domain of unknown function (DUF4162) RAM_RS14255 PF01458 Uncharacterized protein family (UPF0051) RAM_RS14260 PF01458 Uncharacterized protein family (UPF0051) RAM_RS14265 PF00005 ABC transporter RAM_RS14270 PF00266 Aminotransferase class-V RAM_RS14275 PF01592 NifU-like N terminal domain RAM_RS14280 PF01883 Iron-sulfur cluster assembly protein RAM_RS14290 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RAM_RS14300 PF03109 ABC1 family RAM_RS14305 PF02031 Streptomyces extracellular neutral proteinase (M7) family RAM_RS14310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS14310 PF07730 Histidine kinase RAM_RS14315 PF00072 Response regulator receiver domain RAM_RS14315 PF00196 Bacterial regulatory proteins, luxR family RAM_RS14320 PF01209 ubiE/COQ5 methyltransferase family RAM_RS14330 PF00009 Elongation factor Tu GTP binding domain RAM_RS14335 PF01507 Phosphoadenosine phosphosulfate reductase family RAM_RS14350 PF00106 short chain dehydrogenase RAM_RS14355 PF13181 Tetratricopeptide repeat RAM_RS14360 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_RS14385 PF00563 EAL domain RAM_RS14385 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS14385 PF03707 Bacterial signalling protein N terminal repeat RAM_RS14405 PF13286 Phosphohydrolase-associated domain RAM_RS14405 PF01966 HD domain RAM_RS14420 PF00005 ABC transporter RAM_RS14420 PF12848 ABC transporter RAM_RS14435 PF00296 Luciferase-like monooxygenase RAM_RS14445 PF00664 ABC transporter transmembrane region RAM_RS14445 PF00005 ABC transporter RAM_RS14450 PF00144 Beta-lactamase RAM_RS14455 PF13580 SIS domain RAM_RS14470 PF03816 Cell envelope-related transcriptional attenuator domain RAM_RS14475 PF13302 Acetyltransferase (GNAT) domain RAM_RS14480 PF00578 AhpC/TSA family RAM_RS14485 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS14485 PF00563 EAL domain RAM_RS14485 PF03707 Bacterial signalling protein N terminal repeat RAM_RS14490 PF00067 Cytochrome P450 RAM_RS14500 PF00293 NUDIX domain RAM_RS14505 PF00268 Ribonucleotide reductase, small chain RAM_RS14510 PF02867 Ribonucleotide reductase, barrel domain RAM_RS14510 PF00317 Ribonucleotide reductase, all-alpha domain RAM_RS14510 PF03477 ATP cone domain RAM_RS14520 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS14535 PF08608 Wyosine base formation RAM_RS14535 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_RS14545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS14545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS14545 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS14550 PF01039 Carboxyl transferase domain RAM_RS14555 PF02785 Biotin carboxylase C-terminal domain RAM_RS14555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_RS14555 PF00364 Biotin-requiring enzyme RAM_RS14555 PF00289 Biotin carboxylase, N-terminal domain RAM_RS14560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS14560 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS14560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS14580 PF03023 Lipid II flippase MurJ RAM_RS14595 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS14605 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RAM_RS14605 PF03171 2OG-Fe(II) oxygenase superfamily RAM_RS14625 PF00440 Bacterial regulatory proteins, tetR family RAM_RS14630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_RS14630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_RS14635 PF00440 Bacterial regulatory proteins, tetR family RAM_RS14640 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS14640 PF03664 Glycosyl hydrolase family 62 RAM_RS14670 PF00440 Bacterial regulatory proteins, tetR family RAM_RS14670 PF17754 MftR C-terminal domain RAM_RS14675 PF13411 MerR HTH family regulatory protein RAM_RS14690 PF00400 WD domain, G-beta repeat RAM_RS14690 PF12894 Anaphase-promoting complex subunit 4 WD40 domain RAM_RS14695 PF01494 FAD binding domain RAM_RS14705 PF01494 FAD binding domain RAM_RS14765 PF00561 alpha/beta hydrolase fold RAM_RS14770 PF00072 Response regulator receiver domain RAM_RS14770 PF00196 Bacterial regulatory proteins, luxR family RAM_RS14810 PF00082 Subtilase family RAM_RS14810 PF05922 Peptidase inhibitor I9 RAM_RS14835 PF00106 short chain dehydrogenase RAM_RS14845 PF01047 MarR family RAM_RS14875 PF04542 Sigma-70 region 2 RAM_RS14875 PF04545 Sigma-70, region 4 RAM_RS14885 PF00091 Tubulin/FtsZ family, GTPase domain RAM_RS14885 PF12327 FtsZ family, C-terminal domain RAM_RS14890 PF02578 Multi-copper polyphenol oxidoreductase laccase RAM_RS14895 PF01168 Alanine racemase, N-terminal domain RAM_RS14900 PF04472 Cell division protein SepF RAM_RS14910 PF05103 DivIVA protein RAM_RS14925 PF07690 Major Facilitator Superfamily RAM_RS14930 PF08264 Anticodon-binding domain of tRNA RAM_RS14930 PF00133 tRNA synthetases class I (I, L, M and V) RAM_RS14945 PF00999 Sodium/hydrogen exchanger family RAM_RS14945 PF02080 TrkA-C domain RAM_RS14945 PF03471 Transporter associated domain RAM_RS14950 PF00266 Aminotransferase class-V RAM_RS14960 PF01252 Signal peptidase (SPase) II RAM_RS14965 PF00849 RNA pseudouridylate synthase RAM_RS14985 PF00296 Luciferase-like monooxygenase RAM_RS14995 PF02541 Ppx/GppA phosphatase family RAM_RS15005 PF03633 Glycosyl hydrolase family 65, C-terminal domain RAM_RS15005 PF03636 Glycosyl hydrolase family 65, N-terminal domain RAM_RS15005 PF03632 Glycosyl hydrolase family 65 central catalytic domain RAM_RS15010 PF13419 Haloacid dehalogenase-like hydrolase RAM_RS15015 PF01022 Bacterial regulatory protein, arsR family RAM_RS15040 PF00480 ROK family RAM_RS15050 PF03055 Retinal pigment epithelial membrane protein RAM_RS15070 PF04542 Sigma-70 region 2 RAM_RS15070 PF08281 Sigma-70, region 4 RAM_RS15075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RAM_RS15075 PF00034 Cytochrome c RAM_RS15075 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_RS15080 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS15080 PF01799 [2Fe-2S] binding domain RAM_RS15085 PF17853 GGDEF-like domain RAM_RS15085 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS15100 PF00440 Bacterial regulatory proteins, tetR family RAM_RS15100 PF08359 YsiA-like protein, C-terminal region RAM_RS15105 PF00106 short chain dehydrogenase RAM_RS15110 PF00248 Aldo/keto reductase family RAM_RS15115 PF07724 AAA domain (Cdc48 subfamily) RAM_RS15115 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS15115 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_RS15115 PF02861 Clp amino terminal domain, pathogenicity island component RAM_RS15115 PF17871 AAA lid domain RAM_RS15125 PF00962 Adenosine/AMP deaminase RAM_RS15135 PF00570 HRDC domain RAM_RS15135 PF16124 RecQ zinc-binding RAM_RS15135 PF00270 DEAD/DEAH box helicase RAM_RS15135 PF00271 Helicase conserved C-terminal domain RAM_RS15135 PF09382 RQC domain RAM_RS15165 PF09278 MerR, DNA binding RAM_RS15165 PF00376 MerR family regulatory protein RAM_RS15180 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS15180 PF00672 HAMP domain RAM_RS15180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS15185 PF00072 Response regulator receiver domain RAM_RS15185 PF00486 Transcriptional regulatory protein, C terminal RAM_RS15195 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_RS15205 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS15205 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS15205 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS15215 PF00561 alpha/beta hydrolase fold RAM_RS15220 PF02678 Pirin RAM_RS15220 PF05726 Pirin C-terminal cupin domain RAM_RS15230 PF00436 Single-strand binding protein family RAM_RS15245 PF04075 F420H(2)-dependent quinone reductase RAM_RS15250 PF00905 Penicillin binding protein transpeptidase domain RAM_RS15250 PF00912 Transglycosylase RAM_RS15260 PF00005 ABC transporter RAM_RS15265 PF13732 Domain of unknown function (DUF4162) RAM_RS15265 PF00005 ABC transporter RAM_RS15280 PF00107 Zinc-binding dehydrogenase RAM_RS15280 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS15290 PF06983 3-demethylubiquinone-9 3-methyltransferase RAM_RS15310 PF13492 GAF domain RAM_RS15310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS15310 PF07730 Histidine kinase RAM_RS15315 PF00135 Carboxylesterase family RAM_RS15320 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS15320 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_RS15325 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_RS15325 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_RS15330 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_RS15330 PF01799 [2Fe-2S] binding domain RAM_RS15330 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS15345 PF00171 Aldehyde dehydrogenase family RAM_RS15355 PF07702 UTRA domain RAM_RS15355 PF00392 Bacterial regulatory proteins, gntR family RAM_RS15365 PF00107 Zinc-binding dehydrogenase RAM_RS15365 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS15365 PF13823 Alcohol dehydrogenase GroES-associated RAM_RS15380 PF13581 Histidine kinase-like ATPase domain RAM_RS15385 PF01740 STAS domain RAM_RS15390 PF01740 STAS domain RAM_RS15390 PF08678 Rsbr N terminal RAM_RS15410 PF00011 Hsp20/alpha crystallin family RAM_RS15420 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAM_RS15425 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_RS15425 PF00128 Alpha amylase, catalytic domain RAM_RS15430 PF05067 Manganese containing catalase RAM_RS15440 PF05368 NmrA-like family RAM_RS15445 PF01638 HxlR-like helix-turn-helix RAM_RS15470 PF00356 Bacterial regulatory proteins, lacI family RAM_RS15480 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS15485 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS15500 PF00440 Bacterial regulatory proteins, tetR family RAM_RS15505 PF00248 Aldo/keto reductase family RAM_RS15510 PF01965 DJ-1/PfpI family RAM_RS15510 PF12833 Helix-turn-helix domain RAM_RS15515 PF00248 Aldo/keto reductase family RAM_RS15525 PF13280 WYL domain RAM_RS15525 PF08279 HTH domain RAM_RS15535 PF00731 AIR carboxylase RAM_RS15540 PF09861 Lactate racemase N-terminal domain RAM_RS15545 PF04909 Amidohydrolase RAM_RS15550 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_RS15555 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS15555 PF13378 Enolase C-terminal domain-like RAM_RS15570 PF00005 ABC transporter RAM_RS15575 PF02653 Branched-chain amino acid transport system / permease component RAM_RS15580 PF00248 Aldo/keto reductase family RAM_RS15605 PF00356 Bacterial regulatory proteins, lacI family RAM_RS15610 PF00356 Bacterial regulatory proteins, lacI family RAM_RS15615 PF13193 AMP-binding enzyme C-terminal domain RAM_RS15615 PF00501 AMP-binding enzyme RAM_RS15620 PF00561 alpha/beta hydrolase fold RAM_RS15625 PF11774 Lsr2 RAM_RS15630 PF00501 AMP-binding enzyme RAM_RS15630 PF00550 Phosphopantetheine attachment site RAM_RS15630 PF00668 Condensation domain RAM_RS15630 PF13193 AMP-binding enzyme C-terminal domain RAM_RS15635 PF03621 MbtH-like protein RAM_RS15640 PF00144 Beta-lactamase RAM_RS15645 PF00550 Phosphopantetheine attachment site RAM_RS15645 PF00668 Condensation domain RAM_RS15645 PF00501 AMP-binding enzyme RAM_RS15645 PF13193 AMP-binding enzyme C-terminal domain RAM_RS15655 PF00067 Cytochrome P450 RAM_RS15680 PF00107 Zinc-binding dehydrogenase RAM_RS15680 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS15690 PF18416 N-acetylglucosamine binding protein domain 2 RAM_RS15690 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RAM_RS15695 PF12706 Beta-lactamase superfamily domain RAM_RS15720 PF03364 Polyketide cyclase / dehydrase and lipid transport RAM_RS15765 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS15770 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 RAM_RS15770 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_RS15770 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS15770 PF16355 Domain of unknown function (DUF4982) RAM_RS15770 PF00703 Glycosyl hydrolases family 2 RAM_RS15785 PF02126 Phosphotriesterase family RAM_RS15790 PF17922 Tetracyclin repressor-like, C-terminal domain RAM_RS15790 PF00440 Bacterial regulatory proteins, tetR family RAM_RS15795 PF00561 alpha/beta hydrolase fold RAM_RS15805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS15805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS15805 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS15810 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS15810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS15810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS15815 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS15815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS15815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS15825 PF01575 MaoC like domain RAM_RS15835 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS15835 PF13378 Enolase C-terminal domain-like RAM_RS15850 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS15855 PF03737 Aldolase/RraA RAM_RS15860 PF00069 Protein kinase domain RAM_RS15880 PF00072 Response regulator receiver domain RAM_RS15880 PF00196 Bacterial regulatory proteins, luxR family RAM_RS15895 PF07690 Major Facilitator Superfamily RAM_RS15905 PF00672 HAMP domain RAM_RS15905 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS15905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS15910 PF00486 Transcriptional regulatory protein, C terminal RAM_RS15910 PF00072 Response regulator receiver domain RAM_RS15925 PF00005 ABC transporter RAM_RS15945 PF00440 Bacterial regulatory proteins, tetR family RAM_RS15945 PF08362 YcdC-like protein, C-terminal region RAM_RS15955 PF00005 ABC transporter RAM_RS15970 PF03120 NAD-dependent DNA ligase OB-fold domain RAM_RS15970 PF12826 Helix-hairpin-helix motif RAM_RS15970 PF01653 NAD-dependent DNA ligase adenylation domain RAM_RS15975 PF00296 Luciferase-like monooxygenase RAM_RS15985 PF04542 Sigma-70 region 2 RAM_RS15985 PF08281 Sigma-70, region 4 RAM_RS16005 PF06441 Epoxide hydrolase N terminus RAM_RS16015 PF07690 Major Facilitator Superfamily RAM_RS16030 PF04542 Sigma-70 region 2 RAM_RS16030 PF08281 Sigma-70, region 4 RAM_RS16030 PF12680 SnoaL-like domain RAM_RS16050 PF03741 Integral membrane protein TerC family RAM_RS16060 PF00128 Alpha amylase, catalytic domain RAM_RS16070 PF01842 ACT domain RAM_RS16070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_RS16070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_RS16075 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS16080 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS16095 PF08220 DeoR-like helix-turn-helix domain RAM_RS16095 PF00455 DeoR C terminal sensor domain RAM_RS16100 PF00069 Protein kinase domain RAM_RS16100 PF14032 PknH-like extracellular domain RAM_RS16105 PF00356 Bacterial regulatory proteins, lacI family RAM_RS16110 PF00069 Protein kinase domain RAM_RS16110 PF03793 PASTA domain RAM_RS16115 PF00069 Protein kinase domain RAM_RS16115 PF03793 PASTA domain RAM_RS16130 PF12800 4Fe-4S binding domain RAM_RS16130 PF09163 Formate dehydrogenase N, transmembrane RAM_RS16130 PF13247 4Fe-4S dicluster domain RAM_RS16135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS16135 PF01568 Molydopterin dinucleotide binding domain RAM_RS16135 PF00384 Molybdopterin oxidoreductase RAM_RS16140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS16140 PF00384 Molybdopterin oxidoreductase RAM_RS16140 PF01568 Molydopterin dinucleotide binding domain RAM_RS16145 PF00083 Sugar (and other) transporter RAM_RS16160 PF04978 Protein of unknown function (DUF664) RAM_RS16165 PF00891 O-methyltransferase domain RAM_RS16170 PF01381 Helix-turn-helix RAM_RS16185 PF00144 Beta-lactamase RAM_RS16190 PF00689 Cation transporting ATPase, C-terminus RAM_RS16200 PF00296 Luciferase-like monooxygenase RAM_RS16205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS16205 PF03466 LysR substrate binding domain RAM_RS16215 PF02910 Fumarate reductase flavoprotein C-term RAM_RS16215 PF00890 FAD binding domain RAM_RS16220 PF13085 2Fe-2S iron-sulfur cluster binding domain RAM_RS16220 PF13183 4Fe-4S dicluster domain RAM_RS16255 PF05506 Domain of unknown function (DUF756) RAM_RS16255 PF04185 Phosphoesterase family RAM_RS16265 PF00891 O-methyltransferase domain RAM_RS16275 PF01266 FAD dependent oxidoreductase RAM_RS16285 PF04324 BFD-like [2Fe-2S] binding domain RAM_RS16285 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS16290 PF00701 Dihydrodipicolinate synthetase family RAM_RS16295 PF05544 Proline racemase RAM_RS16320 PF13649 Methyltransferase domain RAM_RS16325 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS16330 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS16380 PF01594 AI-2E family transporter RAM_RS16385 PF16369 C-terminal lipocalin-like domain RAM_RS16385 PF04616 Glycosyl hydrolases family 43 RAM_RS16390 PF04679 ATP dependent DNA ligase C terminal region RAM_RS16390 PF13298 DNA polymerase Ligase (LigD) RAM_RS16390 PF01068 ATP dependent DNA ligase domain RAM_RS16395 PF00440 Bacterial regulatory proteins, tetR family RAM_RS16395 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_RS16405 PF01209 ubiE/COQ5 methyltransferase family RAM_RS16410 PF13419 Haloacid dehalogenase-like hydrolase RAM_RS16445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS16445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS16450 PF00501 AMP-binding enzyme RAM_RS16450 PF13193 AMP-binding enzyme C-terminal domain RAM_RS16455 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS16460 PF13193 AMP-binding enzyme C-terminal domain RAM_RS16460 PF00501 AMP-binding enzyme RAM_RS16465 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS16465 PF00107 Zinc-binding dehydrogenase RAM_RS16470 PF00171 Aldehyde dehydrogenase family RAM_RS16490 PF00440 Bacterial regulatory proteins, tetR family RAM_RS16490 PF13305 Tetracyclin repressor-like, C-terminal domain RAM_RS16530 PF00550 Phosphopantetheine attachment site RAM_RS16530 PF00501 AMP-binding enzyme RAM_RS16530 PF13193 AMP-binding enzyme C-terminal domain RAM_RS16535 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_RS16535 PF00553 Cellulose binding domain RAM_RS16540 PF04616 Glycosyl hydrolases family 43 RAM_RS16540 PF03422 Carbohydrate binding module (family 6) RAM_RS16545 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS16545 PF00331 Glycosyl hydrolase family 10 RAM_RS16550 PF00553 Cellulose binding domain RAM_RS16550 PF01341 Glycosyl hydrolases family 6 RAM_RS16560 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS16575 PF03664 Glycosyl hydrolase family 62 RAM_RS16575 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS16590 PF00356 Bacterial regulatory proteins, lacI family RAM_RS16605 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) RAM_RS16610 PF00440 Bacterial regulatory proteins, tetR family RAM_RS16615 PF08281 Sigma-70, region 4 RAM_RS16615 PF04542 Sigma-70 region 2 RAM_RS16630 PF00106 short chain dehydrogenase RAM_RS16635 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS16635 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS16635 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS16645 PF06772 Bacterial low temperature requirement A protein (LtrA) RAM_RS16665 PF00563 EAL domain RAM_RS16665 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS16665 PF03707 Bacterial signalling protein N terminal repeat RAM_RS16675 PF00392 Bacterial regulatory proteins, gntR family RAM_RS16675 PF07702 UTRA domain RAM_RS16680 PF07691 PA14 domain RAM_RS16680 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_RS16680 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_RS16685 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS16690 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS16695 PF01547 Bacterial extracellular solute-binding protein RAM_RS16705 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS16705 PF00585 C-terminal regulatory domain of Threonine dehydratase RAM_RS16715 PF01451 Low molecular weight phosphotyrosine protein phosphatase RAM_RS16720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS16720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS16720 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS16725 PF00196 Bacterial regulatory proteins, luxR family RAM_RS16745 PF00072 Response regulator receiver domain RAM_RS16745 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS16750 PF00356 Bacterial regulatory proteins, lacI family RAM_RS16775 PF13305 Tetracyclin repressor-like, C-terminal domain RAM_RS16775 PF00440 Bacterial regulatory proteins, tetR family RAM_RS16780 PF00089 Trypsin RAM_RS16785 PF00440 Bacterial regulatory proteins, tetR family RAM_RS16795 PF08281 Sigma-70, region 4 RAM_RS16795 PF04542 Sigma-70 region 2 RAM_RS16805 PF00925 GTP cyclohydrolase II RAM_RS16825 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_RS16825 PF00440 Bacterial regulatory proteins, tetR family RAM_RS16835 PF08386 TAP-like protein RAM_RS16835 PF00561 alpha/beta hydrolase fold RAM_RS16850 PF00296 Luciferase-like monooxygenase RAM_RS16865 PF04607 Region found in RelA / SpoT proteins RAM_RS16870 PF00440 Bacterial regulatory proteins, tetR family RAM_RS16870 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_RS16875 PF00067 Cytochrome P450 RAM_RS16890 PF01810 LysE type translocator RAM_RS16895 PF00226 DnaJ domain RAM_RS16895 PF00684 DnaJ central domain RAM_RS16895 PF01556 DnaJ C terminal domain RAM_RS16900 PF13193 AMP-binding enzyme C-terminal domain RAM_RS16900 PF00501 AMP-binding enzyme RAM_RS16915 PF01263 Aldose 1-epimerase RAM_RS16925 PF03176 MMPL family RAM_RS16930 PF07690 Major Facilitator Superfamily RAM_RS16935 PF00501 AMP-binding enzyme RAM_RS16940 PF08659 KR domain RAM_RS16940 PF00550 Phosphopantetheine attachment site RAM_RS16940 PF14765 Polyketide synthase dehydratase RAM_RS16940 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS16940 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS16940 PF00698 Acyl transferase domain RAM_RS16940 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS16945 PF01039 Carboxyl transferase domain RAM_RS16950 PF01476 LysM domain RAM_RS16950 PF00756 Putative esterase RAM_RS16985 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS16990 PF01144 Coenzyme A transferase RAM_RS17000 PF03060 Nitronate monooxygenase RAM_RS17005 PF00296 Luciferase-like monooxygenase RAM_RS17010 PF02803 Thiolase, C-terminal domain RAM_RS17010 PF00108 Thiolase, N-terminal domain RAM_RS17020 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS17020 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS17020 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS17025 PF13193 AMP-binding enzyme C-terminal domain RAM_RS17025 PF00501 AMP-binding enzyme RAM_RS17030 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS17035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS17035 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS17035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS17040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS17040 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS17040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS17045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS17045 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS17045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS17060 PF00392 Bacterial regulatory proteins, gntR family RAM_RS17060 PF07729 FCD domain RAM_RS17065 PF01223 DNA/RNA non-specific endonuclease RAM_RS17080 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS17080 PF00107 Zinc-binding dehydrogenase RAM_RS17085 PF00561 alpha/beta hydrolase fold RAM_RS17090 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_RS17090 PF00672 HAMP domain RAM_RS17100 PF00037 4Fe-4S binding domain RAM_RS17100 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS17105 PF00440 Bacterial regulatory proteins, tetR family RAM_RS17110 PF04072 Leucine carboxyl methyltransferase RAM_RS17125 PF16499 Alpha galactosidase A RAM_RS17125 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_RS17130 PF00356 Bacterial regulatory proteins, lacI family RAM_RS17135 PF13416 Bacterial extracellular solute-binding protein RAM_RS17140 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS17145 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS17150 PF07944 Beta-L-arabinofuranosidase, GH127 RAM_RS17170 PF02031 Streptomyces extracellular neutral proteinase (M7) family RAM_RS17175 PF00440 Bacterial regulatory proteins, tetR family RAM_RS17180 PF07690 Major Facilitator Superfamily RAM_RS17190 PF00480 ROK family RAM_RS17195 PF13520 Amino acid permease RAM_RS17200 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_RS17200 PF16990 Carbohydrate binding module (family 35) RAM_RS17200 PF00703 Glycosyl hydrolases family 2 RAM_RS17200 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS17205 PF00480 ROK family RAM_RS17215 PF00356 Bacterial regulatory proteins, lacI family RAM_RS17230 PF00067 Cytochrome P450 RAM_RS17260 PF00849 RNA pseudouridylate synthase RAM_RS17260 PF01479 S4 domain RAM_RS17270 PF01047 MarR family RAM_RS17275 PF00296 Luciferase-like monooxygenase RAM_RS17285 PF04226 Transglycosylase associated protein RAM_RS17290 PF00753 Metallo-beta-lactamase superfamily RAM_RS17325 PF13193 AMP-binding enzyme C-terminal domain RAM_RS17325 PF00501 AMP-binding enzyme RAM_RS17330 PF01975 Survival protein SurE RAM_RS17350 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS17355 PF01370 NAD dependent epimerase/dehydratase family RAM_RS17380 PF07969 Amidohydrolase family RAM_RS17395 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS17395 PF13378 Enolase C-terminal domain-like RAM_RS17400 PF00144 Beta-lactamase RAM_RS17415 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS17420 PF00005 ABC transporter RAM_RS17420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS17425 PF00005 ABC transporter RAM_RS17425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS17430 PF00144 Beta-lactamase RAM_RS17435 PF07690 Major Facilitator Superfamily RAM_RS17455 PF08241 Methyltransferase domain RAM_RS17470 PF07690 Major Facilitator Superfamily RAM_RS17475 PF00067 Cytochrome P450 RAM_RS17480 PF00717 Peptidase S24-like RAM_RS17480 PF01726 LexA DNA binding domain RAM_RS17485 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RAM_RS17495 PF14765 Polyketide synthase dehydratase RAM_RS17495 PF00550 Phosphopantetheine attachment site RAM_RS17495 PF08659 KR domain RAM_RS17495 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS17495 PF00698 Acyl transferase domain RAM_RS17500 PF03422 Carbohydrate binding module (family 6) RAM_RS17500 PF04616 Glycosyl hydrolases family 43 RAM_RS17515 PF01593 Flavin containing amine oxidoreductase RAM_RS17520 PF00294 pfkB family carbohydrate kinase RAM_RS17525 PF01008 Initiation factor 2 subunit family RAM_RS17525 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_RS17535 PF00893 Small Multidrug Resistance protein RAM_RS17545 PF03773 Predicted permease RAM_RS17560 PF00196 Bacterial regulatory proteins, luxR family RAM_RS17580 PF13193 AMP-binding enzyme C-terminal domain RAM_RS17580 PF00501 AMP-binding enzyme RAM_RS17585 PF00296 Luciferase-like monooxygenase RAM_RS17600 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS17600 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS17615 PF01161 Phosphatidylethanolamine-binding protein RAM_RS17630 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS17630 PF00107 Zinc-binding dehydrogenase RAM_RS17635 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS17635 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_RS17645 PF00196 Bacterial regulatory proteins, luxR family RAM_RS17660 PF00403 Heavy-metal-associated domain RAM_RS17665 PF01435 Peptidase family M48 RAM_RS17695 PF03358 NADPH-dependent FMN reductase RAM_RS17695 PF01566 Natural resistance-associated macrophage protein RAM_RS17700 PF00999 Sodium/hydrogen exchanger family RAM_RS17700 PF02254 TrkA-N domain RAM_RS17700 PF02080 TrkA-C domain RAM_RS17730 PF00391 PEP-utilising enzyme, mobile domain RAM_RS17730 PF01370 NAD dependent epimerase/dehydratase family RAM_RS17735 PF00176 SNF2 family N-terminal domain RAM_RS17735 PF00271 Helicase conserved C-terminal domain RAM_RS17735 PF12419 SNF2 Helicase protein RAM_RS17740 PF04434 SWIM zinc finger RAM_RS17775 PF01494 FAD binding domain RAM_RS17805 PF01645 Conserved region in glutamate synthase RAM_RS17810 PF00486 Transcriptional regulatory protein, C terminal RAM_RS17810 PF00072 Response regulator receiver domain RAM_RS17815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS17815 PF16736 Single Cache-like RAM_RS17815 PF00989 PAS fold RAM_RS17815 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS17830 PF02687 FtsX-like permease family RAM_RS17830 PF12704 MacB-like periplasmic core domain RAM_RS17830 PF00005 ABC transporter RAM_RS17835 PF12704 MacB-like periplasmic core domain RAM_RS17835 PF00005 ABC transporter RAM_RS17835 PF02687 FtsX-like permease family RAM_RS17850 PF00083 Sugar (and other) transporter RAM_RS17855 PF00561 alpha/beta hydrolase fold RAM_RS17865 PF07730 Histidine kinase RAM_RS17870 PF00072 Response regulator receiver domain RAM_RS17870 PF00196 Bacterial regulatory proteins, luxR family RAM_RS17875 PF00144 Beta-lactamase RAM_RS17895 PF07730 Histidine kinase RAM_RS17925 PF12833 Helix-turn-helix domain RAM_RS17925 PF14525 AraC-binding-like domain RAM_RS17935 PF00106 short chain dehydrogenase RAM_RS17940 PF00106 short chain dehydrogenase RAM_RS17985 PF13460 NAD(P)H-binding RAM_RS17995 PF00067 Cytochrome P450 RAM_RS18010 PF00072 Response regulator receiver domain RAM_RS18010 PF00486 Transcriptional regulatory protein, C terminal RAM_RS18015 PF00672 HAMP domain RAM_RS18015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS18015 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS18035 PF01522 Polysaccharide deacetylase RAM_RS18060 PF01339 CheB methylesterase RAM_RS18060 PF01739 CheR methyltransferase, SAM binding domain RAM_RS18060 PF03705 CheR methyltransferase, all-alpha domain RAM_RS18060 PF08448 PAS fold RAM_RS18070 PF01494 FAD binding domain RAM_RS18085 PF00107 Zinc-binding dehydrogenase RAM_RS18085 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS18090 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_RS18090 PF00440 Bacterial regulatory proteins, tetR family RAM_RS18100 PF00484 Carbonic anhydrase RAM_RS18120 PF07859 alpha/beta hydrolase fold RAM_RS18150 PF00106 short chain dehydrogenase RAM_RS18155 PF12894 Anaphase-promoting complex subunit 4 WD40 domain RAM_RS18155 PF00400 WD domain, G-beta repeat RAM_RS18170 PF09278 MerR, DNA binding RAM_RS18170 PF00376 MerR family regulatory protein RAM_RS18180 PF12680 SnoaL-like domain RAM_RS18180 PF08281 Sigma-70, region 4 RAM_RS18180 PF04542 Sigma-70 region 2 RAM_RS18205 PF08291 Peptidase M15 RAM_RS18205 PF01471 Putative peptidoglycan binding domain RAM_RS18220 PF00486 Transcriptional regulatory protein, C terminal RAM_RS18220 PF03704 Bacterial transcriptional activator domain RAM_RS18220 PF00931 NB-ARC domain RAM_RS18225 PF00072 Response regulator receiver domain RAM_RS18225 PF00196 Bacterial regulatory proteins, luxR family RAM_RS18230 PF01648 4'-phosphopantetheinyl transferase superfamily RAM_RS18235 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS18235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS18235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS18250 PF00550 Phosphopantetheine attachment site RAM_RS18255 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_RS18255 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_RS18275 PF13732 Domain of unknown function (DUF4162) RAM_RS18275 PF00005 ABC transporter RAM_RS18285 PF02543 Carbamoyltransferase N-terminus RAM_RS18285 PF16861 Carbamoyltransferase C-terminus RAM_RS18315 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS18315 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_RS18320 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_RS18320 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_RS18325 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS18325 PF01799 [2Fe-2S] binding domain RAM_RS18325 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_RS18335 PF16499 Alpha galactosidase A RAM_RS18335 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_RS18365 PF04075 F420H(2)-dependent quinone reductase RAM_RS18375 PF00440 Bacterial regulatory proteins, tetR family RAM_RS18395 PF00144 Beta-lactamase RAM_RS18410 PF03466 LysR substrate binding domain RAM_RS18410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS18435 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain RAM_RS18435 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain RAM_RS18435 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain RAM_RS18435 PF08531 Alpha-L-rhamnosidase N-terminal domain RAM_RS18450 PF08659 KR domain RAM_RS18450 PF00550 Phosphopantetheine attachment site RAM_RS18450 PF14765 Polyketide synthase dehydratase RAM_RS18450 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS18450 PF08990 Erythronolide synthase docking RAM_RS18450 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS18450 PF00698 Acyl transferase domain RAM_RS18450 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS18450 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS18480 PF00561 alpha/beta hydrolase fold RAM_RS18485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS18485 PF03466 LysR substrate binding domain RAM_RS18515 PF04616 Glycosyl hydrolases family 43 RAM_RS18525 PF12695 Alpha/beta hydrolase family RAM_RS18530 PF00668 Condensation domain RAM_RS18530 PF00550 Phosphopantetheine attachment site RAM_RS18530 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS18530 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS18530 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS18530 PF00698 Acyl transferase domain RAM_RS18535 PF00501 AMP-binding enzyme RAM_RS18535 PF13193 AMP-binding enzyme C-terminal domain RAM_RS18535 PF00668 Condensation domain RAM_RS18535 PF00550 Phosphopantetheine attachment site RAM_RS18535 PF00975 Thioesterase domain RAM_RS18545 PF00668 Condensation domain RAM_RS18545 PF07993 Male sterility protein RAM_RS18545 PF00501 AMP-binding enzyme RAM_RS18545 PF13193 AMP-binding enzyme C-terminal domain RAM_RS18545 PF00550 Phosphopantetheine attachment site RAM_RS18575 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS18575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS18575 PF00672 HAMP domain RAM_RS18580 PF00072 Response regulator receiver domain RAM_RS18580 PF00486 Transcriptional regulatory protein, C terminal RAM_RS18590 PF00072 Response regulator receiver domain RAM_RS18590 PF00196 Bacterial regulatory proteins, luxR family RAM_RS18595 PF05231 MASE1 RAM_RS18595 PF07730 Histidine kinase RAM_RS18595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS18605 PF01494 FAD binding domain RAM_RS18620 PF00872 Transposase, Mutator family RAM_RS18630 PF00440 Bacterial regulatory proteins, tetR family RAM_RS18640 PF01037 Lrp/AsnC ligand binding domain RAM_RS18650 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS18650 PF14765 Polyketide synthase dehydratase RAM_RS18650 PF00550 Phosphopantetheine attachment site RAM_RS18650 PF08659 KR domain RAM_RS18650 PF00698 Acyl transferase domain RAM_RS18655 PF07859 alpha/beta hydrolase fold RAM_RS18670 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_RS18670 PF00703 Glycosyl hydrolases family 2 RAM_RS18670 PF16353 Domain of unknown function(DUF4981) RAM_RS18670 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS18670 PF02929 Beta galactosidase small chain RAM_RS18675 PF00704 Glycosyl hydrolases family 18 RAM_RS18675 PF00041 Fibronectin type III domain RAM_RS18695 PF07690 Major Facilitator Superfamily RAM_RS18705 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS18705 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_RS18715 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_RS18715 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_RS18720 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS18720 PF01799 [2Fe-2S] binding domain RAM_RS18725 PF07690 Major Facilitator Superfamily RAM_RS18730 PF00107 Zinc-binding dehydrogenase RAM_RS18730 PF13823 Alcohol dehydrogenase GroES-associated RAM_RS18730 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS18775 PF01183 Glycosyl hydrolases family 25 RAM_RS18790 PF03600 Citrate transporter RAM_RS18795 PF10503 Esterase PHB depolymerase RAM_RS18805 PF00480 ROK family RAM_RS18805 PF01047 MarR family RAM_RS18810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_RS18815 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS18820 PF00005 ABC transporter RAM_RS18820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS18825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS18825 PF00005 ABC transporter RAM_RS18835 PF00356 Bacterial regulatory proteins, lacI family RAM_RS18840 PF02156 Glycosyl hydrolase family 26 RAM_RS18850 PF00480 ROK family RAM_RS18855 PF16874 Glycosyl hydrolase family 36 C-terminal domain RAM_RS18855 PF16875 Glycosyl hydrolase family 36 N-terminal domain RAM_RS18860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS18860 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS18865 PF12852 Cupin RAM_RS18865 PF12833 Helix-turn-helix domain RAM_RS18875 PF01494 FAD binding domain RAM_RS18925 PF03330 Lytic transglycolase RAM_RS18935 PF00486 Transcriptional regulatory protein, C terminal RAM_RS18935 PF00072 Response regulator receiver domain RAM_RS18940 PF00672 HAMP domain RAM_RS18940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS18940 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS18950 PF01757 Acyltransferase family RAM_RS18965 PF02224 Cytidylate kinase RAM_RS18965 PF02569 Pantoate-beta-alanine ligase RAM_RS18975 PF08386 TAP-like protein RAM_RS18975 PF00561 alpha/beta hydrolase fold RAM_RS18980 PF08241 Methyltransferase domain RAM_RS18990 PF01022 Bacterial regulatory protein, arsR family RAM_RS19010 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RAM_RS19010 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RAM_RS19025 PF07503 HypF finger RAM_RS19025 PF01300 Telomere recombination RAM_RS19025 PF17788 HypF Kae1-like domain RAM_RS19025 PF00708 Acylphosphatase RAM_RS19030 PF02492 CobW/HypB/UreG, nucleotide-binding domain RAM_RS19035 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RAM_RS19040 PF02769 AIR synthase related protein, C-terminal domain RAM_RS19040 PF00586 AIR synthase related protein, N-terminal domain RAM_RS19045 PF01924 Hydrogenase formation hypA family RAM_RS19050 PF01455 HupF/HypC family RAM_RS19080 PF00374 Nickel-dependent hydrogenase RAM_RS19085 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RAM_RS19085 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RAM_RS19090 PF13580 SIS domain RAM_RS19100 PF13580 SIS domain RAM_RS19135 PF00486 Transcriptional regulatory protein, C terminal RAM_RS19135 PF00931 NB-ARC domain RAM_RS19135 PF03704 Bacterial transcriptional activator domain RAM_RS19140 PF00561 alpha/beta hydrolase fold RAM_RS19145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS19145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS19145 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS19150 PF01638 HxlR-like helix-turn-helix RAM_RS19170 PF00440 Bacterial regulatory proteins, tetR family RAM_RS19175 PF14765 Polyketide synthase dehydratase RAM_RS19175 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS19175 PF00550 Phosphopantetheine attachment site RAM_RS19175 PF08659 KR domain RAM_RS19175 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS19175 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS19175 PF00698 Acyl transferase domain RAM_RS19175 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS19185 PF00296 Luciferase-like monooxygenase RAM_RS19225 PF00005 ABC transporter RAM_RS19225 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_RS19230 PF00005 ABC transporter RAM_RS19235 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS19240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS19240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS19240 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS19245 PF13193 AMP-binding enzyme C-terminal domain RAM_RS19245 PF00501 AMP-binding enzyme RAM_RS19250 PF02551 Acyl-CoA thioesterase RAM_RS19260 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS19265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS19265 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS19265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS19270 PF00171 Aldehyde dehydrogenase family RAM_RS19280 PF02515 CoA-transferase family III RAM_RS19285 PF00108 Thiolase, N-terminal domain RAM_RS19285 PF02803 Thiolase, C-terminal domain RAM_RS19290 PF03060 Nitronate monooxygenase RAM_RS19295 PF00753 Metallo-beta-lactamase superfamily RAM_RS19300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_RS19300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_RS19305 PF00171 Aldehyde dehydrogenase family RAM_RS19315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS19315 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS19315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS19345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS19345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS19345 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS19365 PF00108 Thiolase, N-terminal domain RAM_RS19365 PF02803 Thiolase, C-terminal domain RAM_RS19370 PF00106 short chain dehydrogenase RAM_RS19380 PF02803 Thiolase, C-terminal domain RAM_RS19380 PF00108 Thiolase, N-terminal domain RAM_RS19385 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS19395 PF00232 Glycosyl hydrolase family 1 RAM_RS19400 PF00106 short chain dehydrogenase RAM_RS19415 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS19420 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS19425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS19425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS19425 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS19430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS19430 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS19430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS19435 PF13193 AMP-binding enzyme C-terminal domain RAM_RS19435 PF00501 AMP-binding enzyme RAM_RS19450 PF01575 MaoC like domain RAM_RS19455 PF07729 FCD domain RAM_RS19455 PF00392 Bacterial regulatory proteins, gntR family RAM_RS19460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS19460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS19460 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS19475 PF05893 Acyl-CoA reductase (LuxC) RAM_RS19480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS19480 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS19480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS19485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS19485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS19485 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS19490 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS19495 PF07702 UTRA domain RAM_RS19495 PF00392 Bacterial regulatory proteins, gntR family RAM_RS19500 PF00106 short chain dehydrogenase RAM_RS19505 PF00809 Pterin binding enzyme RAM_RS19510 PF13193 AMP-binding enzyme C-terminal domain RAM_RS19510 PF00501 AMP-binding enzyme RAM_RS19525 PF12697 Alpha/beta hydrolase family RAM_RS19535 PF00440 Bacterial regulatory proteins, tetR family RAM_RS19540 PF00890 FAD binding domain RAM_RS19545 PF02585 GlcNAc-PI de-N-acetylase RAM_RS19550 PF00486 Transcriptional regulatory protein, C terminal RAM_RS19550 PF03704 Bacterial transcriptional activator domain RAM_RS19550 PF00931 NB-ARC domain RAM_RS19570 PF00175 Oxidoreductase NAD-binding domain RAM_RS19570 PF00042 Globin RAM_RS19570 PF00970 Oxidoreductase FAD-binding domain RAM_RS19575 PF00480 ROK family RAM_RS19580 PF07350 Protein of unknown function (DUF1479) RAM_RS19585 PF07687 Peptidase dimerisation domain RAM_RS19585 PF01546 Peptidase family M20/M25/M40 RAM_RS19595 PF13520 Amino acid permease RAM_RS19600 PF00723 Glycosyl hydrolases family 15 RAM_RS19605 PF07690 Major Facilitator Superfamily RAM_RS19620 PF00072 Response regulator receiver domain RAM_RS19620 PF00196 Bacterial regulatory proteins, luxR family RAM_RS19650 PF13191 AAA ATPase domain RAM_RS19650 PF00069 Protein kinase domain RAM_RS19655 PF01594 AI-2E family transporter RAM_RS19665 PF07995 Glucose / Sorbosone dehydrogenase RAM_RS19670 PF02056 Family 4 glycosyl hydrolase RAM_RS19670 PF11975 Family 4 glycosyl hydrolase C-terminal domain RAM_RS19675 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS19680 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS19695 PF00455 DeoR C terminal sensor domain RAM_RS19695 PF08220 DeoR-like helix-turn-helix domain RAM_RS19700 PF01380 SIS domain RAM_RS19715 PF00294 pfkB family carbohydrate kinase RAM_RS19720 PF01116 Fructose-bisphosphate aldolase class-II RAM_RS19735 PF14765 Polyketide synthase dehydratase RAM_RS19735 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS19735 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS19735 PF00550 Phosphopantetheine attachment site RAM_RS19735 PF08659 KR domain RAM_RS19735 PF00698 Acyl transferase domain RAM_RS19735 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS19740 PF00067 Cytochrome P450 RAM_RS19750 PF00698 Acyl transferase domain RAM_RS19750 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS19750 PF08990 Erythronolide synthase docking RAM_RS19750 PF08659 KR domain RAM_RS19750 PF09277 Erythronolide synthase, docking RAM_RS19750 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS19750 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS19750 PF00550 Phosphopantetheine attachment site RAM_RS19750 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS19750 PF14765 Polyketide synthase dehydratase RAM_RS19760 PF12680 SnoaL-like domain RAM_RS19760 PF08281 Sigma-70, region 4 RAM_RS19760 PF04542 Sigma-70 region 2 RAM_RS19765 PF00942 Cellulose binding domain RAM_RS19765 PF00041 Fibronectin type III domain RAM_RS19765 PF00759 Glycosyl hydrolase family 9 RAM_RS19765 PF00553 Cellulose binding domain RAM_RS19790 PF06441 Epoxide hydrolase N terminus RAM_RS19800 PF02911 Formyl transferase, C-terminal domain RAM_RS19800 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS19800 PF00551 Formyl transferase RAM_RS19805 PF00931 NB-ARC domain RAM_RS19805 PF00486 Transcriptional regulatory protein, C terminal RAM_RS19805 PF03704 Bacterial transcriptional activator domain RAM_RS19815 PF00664 ABC transporter transmembrane region RAM_RS19815 PF00005 ABC transporter RAM_RS19835 PF00376 MerR family regulatory protein RAM_RS19835 PF09278 MerR, DNA binding RAM_RS19840 PF13193 AMP-binding enzyme C-terminal domain RAM_RS19840 PF00501 AMP-binding enzyme RAM_RS19860 PF00106 short chain dehydrogenase RAM_RS19865 PF13378 Enolase C-terminal domain-like RAM_RS19865 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS19870 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS19875 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS19880 PF01547 Bacterial extracellular solute-binding protein RAM_RS19885 PF07729 FCD domain RAM_RS19885 PF00392 Bacterial regulatory proteins, gntR family RAM_RS19895 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_RS19910 PF00067 Cytochrome P450 RAM_RS19915 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RAM_RS19925 PF00975 Thioesterase domain RAM_RS19925 PF00550 Phosphopantetheine attachment site RAM_RS19925 PF13193 AMP-binding enzyme C-terminal domain RAM_RS19925 PF00501 AMP-binding enzyme RAM_RS19925 PF00668 Condensation domain RAM_RS19935 PF00440 Bacterial regulatory proteins, tetR family RAM_RS19965 PF01494 FAD binding domain RAM_RS19975 PF00480 ROK family RAM_RS19975 PF01325 Iron dependent repressor, N-terminal DNA binding domain RAM_RS19980 PF01047 MarR family RAM_RS19980 PF00480 ROK family RAM_RS19990 PF02653 Branched-chain amino acid transport system / permease component RAM_RS20000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS20000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS20010 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS20010 PF00107 Zinc-binding dehydrogenase RAM_RS20015 PF00440 Bacterial regulatory proteins, tetR family RAM_RS20055 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_RS20055 PF00440 Bacterial regulatory proteins, tetR family RAM_RS20065 PF00553 Cellulose binding domain RAM_RS20065 PF01341 Glycosyl hydrolases family 6 RAM_RS20070 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS20070 PF00331 Glycosyl hydrolase family 10 RAM_RS20075 PF16483 Beta-1,3-glucanase RAM_RS20075 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS20080 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS20080 PF00331 Glycosyl hydrolase family 10 RAM_RS20085 PF00107 Zinc-binding dehydrogenase RAM_RS20085 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS20090 PF00440 Bacterial regulatory proteins, tetR family RAM_RS20090 PF17926 Tetracyclin repressor-like, C-terminal domain RAM_RS20095 PF13193 AMP-binding enzyme C-terminal domain RAM_RS20095 PF00501 AMP-binding enzyme RAM_RS20100 PF07730 Histidine kinase RAM_RS20100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS20100 PF13492 GAF domain RAM_RS20100 PF13185 GAF domain RAM_RS20105 PF00083 Sugar (and other) transporter RAM_RS20110 PF07519 Tannase and feruloyl esterase RAM_RS20115 PF14310 Fibronectin type III-like domain RAM_RS20115 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS20115 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS20130 PF00331 Glycosyl hydrolase family 10 RAM_RS20130 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS20135 PF07905 Purine catabolism regulatory protein-like family RAM_RS20135 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS20135 PF17853 GGDEF-like domain RAM_RS20140 PF00550 Phosphopantetheine attachment site RAM_RS20145 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS20145 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS20150 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_RS20150 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_RS20155 PF00535 Glycosyl transferase family 2 RAM_RS20160 PF00067 Cytochrome P450 RAM_RS20165 PF13193 AMP-binding enzyme C-terminal domain RAM_RS20165 PF00501 AMP-binding enzyme RAM_RS20175 PF00486 Transcriptional regulatory protein, C terminal RAM_RS20175 PF03704 Bacterial transcriptional activator domain RAM_RS20180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS20180 PF03466 LysR substrate binding domain RAM_RS20205 PF01047 MarR family RAM_RS20210 PF03704 Bacterial transcriptional activator domain RAM_RS20210 PF00931 NB-ARC domain RAM_RS20210 PF00486 Transcriptional regulatory protein, C terminal RAM_RS20215 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_RS20215 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_RS20220 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_RS20220 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_RS20230 PF00072 Response regulator receiver domain RAM_RS20230 PF00196 Bacterial regulatory proteins, luxR family RAM_RS20240 PF02687 FtsX-like permease family RAM_RS20240 PF12704 MacB-like periplasmic core domain RAM_RS20240 PF00005 ABC transporter RAM_RS20270 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS20275 PF00501 AMP-binding enzyme RAM_RS20275 PF00501 AMP-binding enzyme RAM_RS20275 PF00668 Condensation domain RAM_RS20275 PF00550 Phosphopantetheine attachment site RAM_RS20275 PF13193 AMP-binding enzyme C-terminal domain RAM_RS20275 PF00668 Condensation domain RAM_RS20275 PF00550 Phosphopantetheine attachment site RAM_RS20275 PF13193 AMP-binding enzyme C-terminal domain RAM_RS20285 PF03621 MbtH-like protein RAM_RS20290 PF00005 ABC transporter RAM_RS20290 PF13732 Domain of unknown function (DUF4162) RAM_RS20300 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS20310 PF02655 ATP-grasp domain RAM_RS20325 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS20325 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS20330 PF00550 Phosphopantetheine attachment site RAM_RS20335 PF00931 NB-ARC domain RAM_RS20335 PF00486 Transcriptional regulatory protein, C terminal RAM_RS20335 PF03704 Bacterial transcriptional activator domain RAM_RS20340 PF00137 ATP synthase subunit C RAM_RS20360 PF10503 Esterase PHB depolymerase RAM_RS20365 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS20365 PF00672 HAMP domain RAM_RS20365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS20370 PF00072 Response regulator receiver domain RAM_RS20370 PF00486 Transcriptional regulatory protein, C terminal RAM_RS20375 PF00144 Beta-lactamase RAM_RS20380 PF00459 Inositol monophosphatase family RAM_RS20385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS20385 PF03466 LysR substrate binding domain RAM_RS20400 PF00083 Sugar (and other) transporter RAM_RS20410 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS20410 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS20420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS20420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS20420 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS20430 PF00668 Condensation domain RAM_RS20430 PF00550 Phosphopantetheine attachment site RAM_RS20430 PF00668 Condensation domain RAM_RS20430 PF13193 AMP-binding enzyme C-terminal domain RAM_RS20430 PF00550 Phosphopantetheine attachment site RAM_RS20430 PF13193 AMP-binding enzyme C-terminal domain RAM_RS20430 PF00501 AMP-binding enzyme RAM_RS20430 PF00501 AMP-binding enzyme RAM_RS20435 PF00501 AMP-binding enzyme RAM_RS20435 PF00668 Condensation domain RAM_RS20435 PF13193 AMP-binding enzyme C-terminal domain RAM_RS20435 PF00550 Phosphopantetheine attachment site RAM_RS20435 PF00668 Condensation domain RAM_RS20435 PF13193 AMP-binding enzyme C-terminal domain RAM_RS20435 PF00501 AMP-binding enzyme RAM_RS20435 PF00550 Phosphopantetheine attachment site RAM_RS20440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_RS20440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_RS20450 PF01593 Flavin containing amine oxidoreductase RAM_RS20455 PF01593 Flavin containing amine oxidoreductase RAM_RS20460 PF01209 ubiE/COQ5 methyltransferase family RAM_RS20480 PF01593 Flavin containing amine oxidoreductase RAM_RS20485 PF00348 Polyprenyl synthetase RAM_RS20500 PF01593 Flavin containing amine oxidoreductase RAM_RS20505 PF01066 CDP-alcohol phosphatidyltransferase RAM_RS20530 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS20535 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS20550 PF00356 Bacterial regulatory proteins, lacI family RAM_RS20570 PF00041 Fibronectin type III domain RAM_RS20570 PF00704 Glycosyl hydrolases family 18 RAM_RS20570 PF00553 Cellulose binding domain RAM_RS20580 PF07517 SecA DEAD-like domain RAM_RS20580 PF07516 SecA Wing and Scaffold domain RAM_RS20580 PF02810 SEC-C motif RAM_RS20580 PF01043 SecA preprotein cross-linking domain RAM_RS20595 PF00553 Cellulose binding domain RAM_RS20595 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_RS20605 PF13581 Histidine kinase-like ATPase domain RAM_RS20605 PF08448 PAS fold RAM_RS20605 PF07228 Stage II sporulation protein E (SpoIIE) RAM_RS20605 PF13466 STAS domain RAM_RS20615 PF00561 alpha/beta hydrolase fold RAM_RS20625 PF00296 Luciferase-like monooxygenase RAM_RS20635 PF00141 Peroxidase RAM_RS20640 PF01475 Ferric uptake regulator family RAM_RS20645 PF00303 Thymidylate synthase RAM_RS20650 PF00186 Dihydrofolate reductase RAM_RS20655 PF00732 GMC oxidoreductase RAM_RS20655 PF05199 GMC oxidoreductase RAM_RS20660 PF00171 Aldehyde dehydrogenase family RAM_RS20665 PF13091 PLD-like domain RAM_RS20675 PF00970 Oxidoreductase FAD-binding domain RAM_RS20675 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS20685 PF00355 Rieske [2Fe-2S] domain RAM_RS20695 PF03405 Fatty acid desaturase RAM_RS20700 PF07477 Glycosyl hydrolase family 67 C-terminus RAM_RS20700 PF07488 Glycosyl hydrolase family 67 middle domain RAM_RS20700 PF03648 Glycosyl hydrolase family 67 N-terminus RAM_RS20715 PF00106 short chain dehydrogenase RAM_RS20760 PF00072 Response regulator receiver domain RAM_RS20760 PF01339 CheB methylesterase RAM_RS20765 PF00072 Response regulator receiver domain RAM_RS20765 PF01339 CheB methylesterase RAM_RS20775 PF01739 CheR methyltransferase, SAM binding domain RAM_RS20775 PF01339 CheB methylesterase RAM_RS20775 PF03705 CheR methyltransferase, all-alpha domain RAM_RS20775 PF08448 PAS fold RAM_RS20785 PF00749 tRNA synthetases class I (E and Q), catalytic domain RAM_RS20830 PF07690 Major Facilitator Superfamily RAM_RS20845 PF04978 Protein of unknown function (DUF664) RAM_RS20850 PF04679 ATP dependent DNA ligase C terminal region RAM_RS20850 PF01068 ATP dependent DNA ligase domain RAM_RS20875 PF07683 Cobalamin synthesis protein cobW C-terminal domain RAM_RS20875 PF02492 CobW/HypB/UreG, nucleotide-binding domain RAM_RS20880 PF02898 Nitric oxide synthase, oxygenase domain RAM_RS20890 PF07690 Major Facilitator Superfamily RAM_RS20900 PF03601 Conserved hypothetical protein 698 RAM_RS20905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS20905 PF03466 LysR substrate binding domain RAM_RS20910 PF03466 LysR substrate binding domain RAM_RS20910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS20925 PF13847 Methyltransferase domain RAM_RS20930 PF00246 Zinc carboxypeptidase RAM_RS20940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_RS20940 PF02785 Biotin carboxylase C-terminal domain RAM_RS20940 PF00289 Biotin carboxylase, N-terminal domain RAM_RS20975 PF00155 Aminotransferase class I and II RAM_RS20975 PF00392 Bacterial regulatory proteins, gntR family RAM_RS20980 PF07690 Major Facilitator Superfamily RAM_RS20990 PF02577 Bifunctional nuclease RAM_RS20995 PF08281 Sigma-70, region 4 RAM_RS20995 PF04542 Sigma-70 region 2 RAM_RS20995 PF12680 SnoaL-like domain RAM_RS21005 PF00501 AMP-binding enzyme RAM_RS21030 PF01938 TRAM domain RAM_RS21030 PF05958 tRNA (Uracil-5-)-methyltransferase RAM_RS21045 PF01068 ATP dependent DNA ligase domain RAM_RS21045 PF13298 DNA polymerase Ligase (LigD) RAM_RS21045 PF04679 ATP dependent DNA ligase C terminal region RAM_RS21050 PF00294 pfkB family carbohydrate kinase RAM_RS21055 PF00570 HRDC domain RAM_RS21055 PF16124 RecQ zinc-binding RAM_RS21055 PF09382 RQC domain RAM_RS21055 PF00271 Helicase conserved C-terminal domain RAM_RS21055 PF00270 DEAD/DEAH box helicase RAM_RS21085 PF13298 DNA polymerase Ligase (LigD) RAM_RS21085 PF01068 ATP dependent DNA ligase domain RAM_RS21085 PF04679 ATP dependent DNA ligase C terminal region RAM_RS21100 PF07859 alpha/beta hydrolase fold RAM_RS21105 PF00440 Bacterial regulatory proteins, tetR family RAM_RS21105 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_RS21115 PF12146 Serine aminopeptidase, S33 RAM_RS21150 PF02146 Sir2 family RAM_RS21165 PF13192 Thioredoxin domain RAM_RS21165 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS21170 PF01381 Helix-turn-helix RAM_RS21185 PF03143 Elongation factor Tu C-terminal domain RAM_RS21185 PF03144 Elongation factor Tu domain 2 RAM_RS21185 PF00009 Elongation factor Tu GTP binding domain RAM_RS21200 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation RAM_RS21200 PF01118 Semialdehyde dehydrogenase, NAD binding domain RAM_RS21205 PF00682 HMGL-like RAM_RS21205 PF07836 DmpG-like communication domain RAM_RS21215 PF01494 FAD binding domain RAM_RS21220 PF17754 MftR C-terminal domain RAM_RS21220 PF00440 Bacterial regulatory proteins, tetR family RAM_RS21230 PF01425 Amidase RAM_RS21235 PF00144 Beta-lactamase RAM_RS21240 PF01810 LysE type translocator RAM_RS21245 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAM_RS21245 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_RS21255 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA RAM_RS21260 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_RS21260 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAM_RS21265 PF04542 Sigma-70 region 2 RAM_RS21265 PF04545 Sigma-70, region 4 RAM_RS21270 PF13649 Methyltransferase domain RAM_RS21270 PF17827 PrmC N-terminal domain RAM_RS21285 PF01037 Lrp/AsnC ligand binding domain RAM_RS21290 PF00202 Aminotransferase class-III RAM_RS21295 PF00067 Cytochrome P450 RAM_RS21305 PF00072 Response regulator receiver domain RAM_RS21305 PF01339 CheB methylesterase RAM_RS21320 PF00069 Protein kinase domain RAM_RS21320 PF03793 PASTA domain RAM_RS21330 PF00183 Hsp90 protein RAM_RS21340 PF00127 Copper binding proteins, plastocyanin/azurin family RAM_RS21375 PF00156 Phosphoribosyl transferase domain RAM_RS21375 PF05139 Erythromycin esterase RAM_RS21425 PF00171 Aldehyde dehydrogenase family RAM_RS21445 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RAM_RS21445 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RAM_RS21445 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RAM_RS21455 PF00106 short chain dehydrogenase RAM_RS21460 PF01467 Cytidylyltransferase-like RAM_RS21460 PF00294 pfkB family carbohydrate kinase RAM_RS21465 PF13580 SIS domain RAM_RS21470 PF02543 Carbamoyltransferase N-terminus RAM_RS21470 PF16861 Carbamoyltransferase C-terminus RAM_RS21475 PF01370 NAD dependent epimerase/dehydratase family RAM_RS21490 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RAM_RS21490 PF00535 Glycosyl transferase family 2 RAM_RS21495 PF13439 Glycosyltransferase Family 4 RAM_RS21495 PF00534 Glycosyl transferases group 1 RAM_RS21510 PF01384 Phosphate transporter family RAM_RS21515 PF13823 Alcohol dehydrogenase GroES-associated RAM_RS21515 PF00107 Zinc-binding dehydrogenase RAM_RS21515 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS21520 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS21520 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal RAM_RS21520 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_RS21540 PF03631 Virulence factor BrkB RAM_RS21565 PF00355 Rieske [2Fe-2S] domain RAM_RS21565 PF01266 FAD dependent oxidoreductase RAM_RS21570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_RS21570 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RAM_RS21570 PF02142 MGS-like domain RAM_RS21575 PF05175 Methyltransferase small domain RAM_RS21575 PF17827 PrmC N-terminal domain RAM_RS21590 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_RS21600 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_RS21610 PF01276 Orn/Lys/Arg decarboxylase, major domain RAM_RS21610 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RAM_RS21620 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RAM_RS21625 PF00296 Luciferase-like monooxygenase RAM_RS21630 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS21635 PF00005 ABC transporter RAM_RS21655 PF06441 Epoxide hydrolase N terminus RAM_RS21665 PF00196 Bacterial regulatory proteins, luxR family RAM_RS21670 PF01494 FAD binding domain RAM_RS21675 PF01230 HIT domain RAM_RS21680 PF05651 Putative sugar diacid recognition RAM_RS21680 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS21680 PF17853 GGDEF-like domain RAM_RS21705 PF02954 Bacterial regulatory protein, Fis family RAM_RS21715 PF02332 Methane/Phenol/Toluene Hydroxylase RAM_RS21720 PF00970 Oxidoreductase FAD-binding domain RAM_RS21720 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS21720 PF00175 Oxidoreductase NAD-binding domain RAM_RS21725 PF02332 Methane/Phenol/Toluene Hydroxylase RAM_RS21730 PF02406 MmoB/DmpM family RAM_RS21750 PF00118 TCP-1/cpn60 chaperonin family RAM_RS21760 PF03704 Bacterial transcriptional activator domain RAM_RS21760 PF00931 NB-ARC domain RAM_RS21760 PF00486 Transcriptional regulatory protein, C terminal RAM_RS21775 PF00440 Bacterial regulatory proteins, tetR family RAM_RS21780 PF06441 Epoxide hydrolase N terminus RAM_RS21790 PF13409 Glutathione S-transferase, N-terminal domain RAM_RS21800 PF04264 YceI-like domain RAM_RS21805 PF00440 Bacterial regulatory proteins, tetR family RAM_RS21815 PF01055 Glycosyl hydrolases family 31 RAM_RS21820 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS21825 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS21835 PF00356 Bacterial regulatory proteins, lacI family RAM_RS21840 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS21840 PF07691 PA14 domain RAM_RS21840 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS21840 PF14310 Fibronectin type III-like domain RAM_RS21850 PF00067 Cytochrome P450 RAM_RS21860 PF00563 EAL domain RAM_RS21860 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS21860 PF00498 FHA domain RAM_RS21875 PF02754 Cysteine-rich domain RAM_RS21875 PF13183 4Fe-4S dicluster domain RAM_RS21875 PF02665 Nitrate reductase gamma subunit RAM_RS21880 PF00498 FHA domain RAM_RS21880 PF12401 Protein of unknown function (DUF2662) RAM_RS21890 PF00083 Sugar (and other) transporter RAM_RS21890 PF07690 Major Facilitator Superfamily RAM_RS21900 PF08501 Shikimate dehydrogenase substrate binding domain RAM_RS21900 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RAM_RS21905 PF01261 Xylose isomerase-like TIM barrel RAM_RS21905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_RS21910 PF01547 Bacterial extracellular solute-binding protein RAM_RS21915 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS21920 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS21925 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS21970 PF04542 Sigma-70 region 2 RAM_RS21970 PF08281 Sigma-70, region 4 RAM_RS21980 PF13492 GAF domain RAM_RS21980 PF13185 GAF domain RAM_RS21980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS21980 PF07730 Histidine kinase RAM_RS21985 PF00196 Bacterial regulatory proteins, luxR family RAM_RS21985 PF00072 Response regulator receiver domain RAM_RS22005 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS22005 PF14759 Reductase C-terminal RAM_RS22010 PF01227 GTP cyclohydrolase I RAM_RS22025 PF00356 Bacterial regulatory proteins, lacI family RAM_RS22045 PF00106 short chain dehydrogenase RAM_RS22050 PF00041 Fibronectin type III domain RAM_RS22050 PF00553 Cellulose binding domain RAM_RS22050 PF00704 Glycosyl hydrolases family 18 RAM_RS22060 PF07943 Penicillin-binding protein 5, C-terminal domain RAM_RS22060 PF00768 D-alanyl-D-alanine carboxypeptidase RAM_RS22070 PF00356 Bacterial regulatory proteins, lacI family RAM_RS22075 PF13407 Periplasmic binding protein domain RAM_RS22080 PF00005 ABC transporter RAM_RS22085 PF02653 Branched-chain amino acid transport system / permease component RAM_RS22090 PF02653 Branched-chain amino acid transport system / permease component RAM_RS22095 PF02018 Carbohydrate binding domain RAM_RS22095 PF06964 Alpha-L-arabinofuranosidase C-terminal domain RAM_RS22100 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_RS22100 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_RS22105 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_RS22110 PF02610 L-arabinose isomerase RAM_RS22110 PF11762 L-arabinose isomerase C-terminal domain RAM_RS22115 PF13407 Periplasmic binding protein domain RAM_RS22120 PF00005 ABC transporter RAM_RS22125 PF02653 Branched-chain amino acid transport system / permease component RAM_RS22135 PF00356 Bacterial regulatory proteins, lacI family RAM_RS22140 PF00067 Cytochrome P450 RAM_RS22145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_RS22145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_RS22150 PF01614 Bacterial transcriptional regulator RAM_RS22150 PF09339 IclR helix-turn-helix domain RAM_RS22155 PF00230 Major intrinsic protein RAM_RS22160 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_RS22160 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_RS22165 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RAM_RS22165 PF01266 FAD dependent oxidoreductase RAM_RS22175 PF00764 Arginosuccinate synthase RAM_RS22180 PF09277 Erythronolide synthase, docking RAM_RS22180 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS22180 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS22180 PF00698 Acyl transferase domain RAM_RS22180 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS22180 PF08990 Erythronolide synthase docking RAM_RS22180 PF14765 Polyketide synthase dehydratase RAM_RS22180 PF08659 KR domain RAM_RS22180 PF00550 Phosphopantetheine attachment site RAM_RS22180 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS22215 PF00144 Beta-lactamase RAM_RS22220 PF04030 D-arabinono-1,4-lactone oxidase RAM_RS22220 PF01565 FAD binding domain RAM_RS22225 PF00356 Bacterial regulatory proteins, lacI family RAM_RS22235 PF13416 Bacterial extracellular solute-binding protein RAM_RS22240 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS22245 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS22255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS22255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS22260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS22260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS22270 PF00544 Pectate lyase RAM_RS22275 PF03211 Pectate lyase RAM_RS22280 PF01095 Pectinesterase RAM_RS22285 PF04616 Glycosyl hydrolases family 43 RAM_RS22300 PF00931 NB-ARC domain RAM_RS22300 PF03704 Bacterial transcriptional activator domain RAM_RS22300 PF00486 Transcriptional regulatory protein, C terminal RAM_RS22315 PF00582 Universal stress protein family RAM_RS22320 PF06750 Bacterial Peptidase A24 N-terminal domain RAM_RS22320 PF01478 Type IV leader peptidase family RAM_RS22340 PF00482 Type II secretion system (T2SS), protein F RAM_RS22345 PF00437 Type II/IV secretion system protein RAM_RS22350 PF00437 Type II/IV secretion system protein RAM_RS22355 PF07963 Prokaryotic N-terminal methylation motif RAM_RS22355 PF08334 Type II secretion system (T2SS), protein G RAM_RS22380 PF01370 NAD dependent epimerase/dehydratase family RAM_RS22380 PF08338 Domain of unknown function (DUF1731) RAM_RS22390 PF07859 alpha/beta hydrolase fold RAM_RS22395 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS22395 PF00107 Zinc-binding dehydrogenase RAM_RS22400 PF00483 Nucleotidyl transferase RAM_RS22405 PF13439 Glycosyltransferase Family 4 RAM_RS22405 PF00534 Glycosyl transferases group 1 RAM_RS22415 PF01740 STAS domain RAM_RS22430 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS22430 PF00703 Glycosyl hydrolases family 2 RAM_RS22430 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_RS22430 PF16990 Carbohydrate binding module (family 35) RAM_RS22440 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS22440 PF17853 GGDEF-like domain RAM_RS22445 PF00679 Elongation factor G C-terminus RAM_RS22445 PF03144 Elongation factor Tu domain 2 RAM_RS22445 PF00009 Elongation factor Tu GTP binding domain RAM_RS22445 PF03764 Elongation factor G, domain IV RAM_RS22445 PF14492 Elongation Factor G, domain II RAM_RS22450 PF00266 Aminotransferase class-V RAM_RS22460 PF09594 Glycosyltransferase family 87 RAM_RS22475 PF01494 FAD binding domain RAM_RS22490 PF07690 Major Facilitator Superfamily RAM_RS22495 PF00698 Acyl transferase domain RAM_RS22495 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS22495 PF00550 Phosphopantetheine attachment site RAM_RS22495 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS22495 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS22495 PF00975 Thioesterase domain RAM_RS22500 PF00501 AMP-binding enzyme RAM_RS22515 PF00106 short chain dehydrogenase RAM_RS22520 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_RS22520 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_RS22530 PF01068 ATP dependent DNA ligase domain RAM_RS22530 PF04679 ATP dependent DNA ligase C terminal region RAM_RS22530 PF13298 DNA polymerase Ligase (LigD) RAM_RS22540 PF01513 ATP-NAD kinase RAM_RS22545 PF00743 Flavin-binding monooxygenase-like RAM_RS22550 PF00106 short chain dehydrogenase RAM_RS22555 PF00561 alpha/beta hydrolase fold RAM_RS22560 PF00067 Cytochrome P450 RAM_RS22570 PF03704 Bacterial transcriptional activator domain RAM_RS22570 PF00931 NB-ARC domain RAM_RS22570 PF00486 Transcriptional regulatory protein, C terminal RAM_RS22575 PF00381 PTS HPr component phosphorylation site RAM_RS22580 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RAM_RS22580 PF02378 Phosphotransferase system, EIIC RAM_RS22585 PF05524 PEP-utilising enzyme, N-terminal RAM_RS22585 PF00391 PEP-utilising enzyme, mobile domain RAM_RS22585 PF02896 PEP-utilising enzyme, TIM barrel domain RAM_RS22585 PF00381 PTS HPr component phosphorylation site RAM_RS22585 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RAM_RS22590 PF00294 pfkB family carbohydrate kinase RAM_RS22600 PF05524 PEP-utilising enzyme, N-terminal RAM_RS22600 PF00391 PEP-utilising enzyme, mobile domain RAM_RS22600 PF02896 PEP-utilising enzyme, TIM barrel domain RAM_RS22605 PF00899 ThiF family RAM_RS22620 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS22620 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS22620 PF14310 Fibronectin type III-like domain RAM_RS22625 PF00356 Bacterial regulatory proteins, lacI family RAM_RS22635 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS22640 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS22650 PF00356 Bacterial regulatory proteins, lacI family RAM_RS22655 PF00331 Glycosyl hydrolase family 10 RAM_RS22655 PF00553 Cellulose binding domain RAM_RS22660 PF01522 Polysaccharide deacetylase RAM_RS22660 PF00457 Glycosyl hydrolases family 11 RAM_RS22670 PF00313 'Cold-shock' DNA-binding domain RAM_RS22715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS22715 PF01627 Hpt domain RAM_RS22715 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS22715 PF00072 Response regulator receiver domain RAM_RS22715 PF00672 HAMP domain RAM_RS22715 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RAM_RS22720 PF07228 Stage II sporulation protein E (SpoIIE) RAM_RS22720 PF08448 PAS fold RAM_RS22720 PF13581 Histidine kinase-like ATPase domain RAM_RS22720 PF13466 STAS domain RAM_RS22725 PF01699 Sodium/calcium exchanger protein RAM_RS22730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS22730 PF03466 LysR substrate binding domain RAM_RS22735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS22735 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS22735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS22750 PF03881 Fructosamine kinase RAM_RS22765 PF04389 Peptidase family M28 RAM_RS22765 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_RS22765 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_RS22775 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_RS22775 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 RAM_RS22775 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS22775 PF00703 Glycosyl hydrolases family 2 RAM_RS22780 PF00356 Bacterial regulatory proteins, lacI family RAM_RS22785 PF00005 ABC transporter RAM_RS22790 PF02653 Branched-chain amino acid transport system / permease component RAM_RS22795 PF02653 Branched-chain amino acid transport system / permease component RAM_RS22805 PF05336 L-rhamnose mutarotase RAM_RS22815 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_RS22825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_RS22825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_RS22830 PF00196 Bacterial regulatory proteins, luxR family RAM_RS22835 PF07730 Histidine kinase RAM_RS22835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS22845 PF00356 Bacterial regulatory proteins, lacI family RAM_RS22850 PF16990 Carbohydrate binding module (family 35) RAM_RS22850 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_RS22850 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS22850 PF00703 Glycosyl hydrolases family 2 RAM_RS22905 PF11799 impB/mucB/samB family C-terminal domain RAM_RS22905 PF00817 impB/mucB/samB family RAM_RS22910 PF04072 Leucine carboxyl methyltransferase RAM_RS22915 PF11774 Lsr2 RAM_RS22925 PF02634 FdhD/NarQ family RAM_RS22930 PF03466 LysR substrate binding domain RAM_RS22930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS22935 PF00549 CoA-ligase RAM_RS22935 PF02629 CoA binding domain RAM_RS22940 PF00549 CoA-ligase RAM_RS22940 PF08442 ATP-grasp domain RAM_RS22945 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS22945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS22945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS22950 PF02515 CoA-transferase family III RAM_RS22955 PF13380 CoA binding domain RAM_RS22955 PF13607 Succinyl-CoA ligase like flavodoxin domain RAM_RS22960 PF07690 Major Facilitator Superfamily RAM_RS22965 PF00392 Bacterial regulatory proteins, gntR family RAM_RS22965 PF07729 FCD domain RAM_RS22970 PF08546 Ketopantoate reductase PanE/ApbA C terminal RAM_RS22970 PF02558 Ketopantoate reductase PanE/ApbA RAM_RS22975 PF01568 Molydopterin dinucleotide binding domain RAM_RS22975 PF00384 Molybdopterin oxidoreductase RAM_RS22975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS22980 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RAM_RS22980 PF10531 SLBB domain RAM_RS22980 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_RS22985 PF01568 Molydopterin dinucleotide binding domain RAM_RS22985 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RAM_RS22985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS22985 PF00384 Molybdopterin oxidoreductase RAM_RS22990 PF01261 Xylose isomerase-like TIM barrel RAM_RS22995 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_RS22995 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_RS23000 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS23000 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS23000 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS23005 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_RS23005 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_RS23010 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS23010 PF01799 [2Fe-2S] binding domain RAM_RS23015 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS23015 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_RS23020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_RS23025 PF00860 Permease family RAM_RS23035 PF02595 Glycerate kinase family RAM_RS23045 PF09137 Glucodextranase, domain N RAM_RS23045 PF00723 Glycosyl hydrolases family 15 RAM_RS23060 PF03099 Biotin/lipoate A/B protein ligase family RAM_RS23060 PF00293 NUDIX domain RAM_RS23065 PF01494 FAD binding domain RAM_RS23070 PF00440 Bacterial regulatory proteins, tetR family RAM_RS23075 PF02929 Beta galactosidase small chain RAM_RS23075 PF16353 Domain of unknown function(DUF4981) RAM_RS23075 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS23075 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_RS23080 PF00356 Bacterial regulatory proteins, lacI family RAM_RS23085 PF00324 Amino acid permease RAM_RS23090 PF04960 Glutaminase RAM_RS23105 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS23110 PF00698 Acyl transferase domain RAM_RS23110 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS23110 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS23110 PF00550 Phosphopantetheine attachment site RAM_RS23110 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS23110 PF08659 KR domain RAM_RS23115 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS23115 PF14765 Polyketide synthase dehydratase RAM_RS23115 PF00550 Phosphopantetheine attachment site RAM_RS23115 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS23115 PF00698 Acyl transferase domain RAM_RS23115 PF00107 Zinc-binding dehydrogenase RAM_RS23115 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS23115 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS23115 PF08659 KR domain RAM_RS23120 PF00550 Phosphopantetheine attachment site RAM_RS23125 PF12697 Alpha/beta hydrolase family RAM_RS23140 PF07690 Major Facilitator Superfamily RAM_RS23150 PF04679 ATP dependent DNA ligase C terminal region RAM_RS23150 PF01068 ATP dependent DNA ligase domain RAM_RS23150 PF13298 DNA polymerase Ligase (LigD) RAM_RS23155 PF02803 Thiolase, C-terminal domain RAM_RS23155 PF00108 Thiolase, N-terminal domain RAM_RS23160 PF01638 HxlR-like helix-turn-helix RAM_RS23165 PF00041 Fibronectin type III domain RAM_RS23165 PF00704 Glycosyl hydrolases family 18 RAM_RS23170 PF08485 Polysaccharide biosynthesis protein C-terminal RAM_RS23170 PF02719 Polysaccharide biosynthesis protein RAM_RS23185 PF03466 LysR substrate binding domain RAM_RS23185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS23200 PF02515 CoA-transferase family III RAM_RS23205 PF02515 CoA-transferase family III RAM_RS23210 PF00356 Bacterial regulatory proteins, lacI family RAM_RS23220 PF01546 Peptidase family M20/M25/M40 RAM_RS23220 PF07687 Peptidase dimerisation domain RAM_RS23225 PF12697 Alpha/beta hydrolase family RAM_RS23260 PF00248 Aldo/keto reductase family RAM_RS23265 PF00296 Luciferase-like monooxygenase RAM_RS23270 PF02673 Bacitracin resistance protein BacA RAM_RS23280 PF01432 Peptidase family M3 RAM_RS23285 PF00574 Clp protease RAM_RS23290 PF00056 lactate/malate dehydrogenase, NAD binding domain RAM_RS23290 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RAM_RS23325 PF07971 Glycosyl hydrolase family 92 RAM_RS23325 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_RS23330 PF07519 Tannase and feruloyl esterase RAM_RS23355 PF01546 Peptidase family M20/M25/M40 RAM_RS23355 PF07687 Peptidase dimerisation domain RAM_RS23365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_RS23370 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS23375 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS23375 PF12911 N-terminal TM domain of oligopeptide transport permease C RAM_RS23380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS23380 PF00005 ABC transporter RAM_RS23395 PF02016 LD-carboxypeptidase N-terminal domain RAM_RS23395 PF17676 LD-carboxypeptidase C-terminal domain RAM_RS23400 PF00326 Prolyl oligopeptidase family RAM_RS23400 PF07676 WD40-like Beta Propeller Repeat RAM_RS23435 PF01145 SPFH domain / Band 7 family RAM_RS23460 PF07690 Major Facilitator Superfamily RAM_RS23460 PF00083 Sugar (and other) transporter RAM_RS23470 PF01494 FAD binding domain RAM_RS23480 PF01022 Bacterial regulatory protein, arsR family RAM_RS23490 PF00440 Bacterial regulatory proteins, tetR family RAM_RS23525 PF04542 Sigma-70 region 2 RAM_RS23525 PF08281 Sigma-70, region 4 RAM_RS23555 PF00440 Bacterial regulatory proteins, tetR family RAM_RS23560 PF12852 Cupin RAM_RS23560 PF12833 Helix-turn-helix domain RAM_RS23590 PF08281 Sigma-70, region 4 RAM_RS23590 PF04542 Sigma-70 region 2 RAM_RS23600 PF00067 Cytochrome P450 RAM_RS23610 PF13732 Domain of unknown function (DUF4162) RAM_RS23610 PF00005 ABC transporter RAM_RS23620 PF12419 SNF2 Helicase protein RAM_RS23620 PF00176 SNF2 family N-terminal domain RAM_RS23620 PF00271 Helicase conserved C-terminal domain RAM_RS23630 PF01494 FAD binding domain RAM_RS23635 PF00440 Bacterial regulatory proteins, tetR family RAM_RS23645 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS23645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS23645 PF18158 Adaptive response protein AidB N-terminal domain RAM_RS23650 PF00440 Bacterial regulatory proteins, tetR family RAM_RS23650 PF17925 Tetracyclin repressor-like, C-terminal domain RAM_RS23660 PF07883 Cupin domain RAM_RS23660 PF01381 Helix-turn-helix RAM_RS23675 PF01022 Bacterial regulatory protein, arsR family RAM_RS23685 PF00589 Phage integrase family RAM_RS23685 PF02899 Phage integrase, N-terminal SAM-like domain RAM_RS23710 PF00265 Thymidine kinase RAM_RS23715 PF13397 RNA polymerase-binding protein RAM_RS23720 PF00293 NUDIX domain RAM_RS23730 PF02585 GlcNAc-PI de-N-acetylase RAM_RS23735 PF00535 Glycosyl transferase family 2 RAM_RS23740 PF00795 Carbon-nitrogen hydrolase RAM_RS23740 PF00535 Glycosyl transferase family 2 RAM_RS23745 PF01979 Amidohydrolase family RAM_RS23750 PF04055 Radical SAM superfamily RAM_RS23750 PF12544 Lysine-2,3-aminomutase RAM_RS23765 PF01965 DJ-1/PfpI family RAM_RS23765 PF12833 Helix-turn-helix domain RAM_RS23770 PF01638 HxlR-like helix-turn-helix RAM_RS23790 PF00931 NB-ARC domain RAM_RS23790 PF00486 Transcriptional regulatory protein, C terminal RAM_RS23790 PF03704 Bacterial transcriptional activator domain RAM_RS23800 PF13575 Domain of unknown function (DUF4135) RAM_RS23800 PF05147 Lanthionine synthetase C-like protein RAM_RS23810 PF03704 Bacterial transcriptional activator domain RAM_RS23810 PF00498 FHA domain RAM_RS23810 PF00486 Transcriptional regulatory protein, C terminal RAM_RS23815 PF00156 Phosphoribosyl transferase domain RAM_RS23825 PF06368 Methylaspartate mutase E chain (MutE) RAM_RS23830 PF01336 OB-fold nucleic acid binding domain RAM_RS23830 PF00152 tRNA synthetases class II (D, K and N) RAM_RS23835 PF01645 Conserved region in glutamate synthase RAM_RS23840 PF00668 Condensation domain RAM_RS23840 PF00501 AMP-binding enzyme RAM_RS23840 PF13193 AMP-binding enzyme C-terminal domain RAM_RS23840 PF00550 Phosphopantetheine attachment site RAM_RS23850 PF01063 Amino-transferase class IV RAM_RS23860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS23860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS23860 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS23865 PF00196 Bacterial regulatory proteins, luxR family RAM_RS23870 PF01212 Beta-eliminating lyase RAM_RS23875 PF00206 Lyase RAM_RS23875 PF02655 ATP-grasp domain RAM_RS23880 PF02655 ATP-grasp domain RAM_RS23880 PF00206 Lyase RAM_RS23885 PF00571 CBS domain RAM_RS23885 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS23890 PF00975 Thioesterase domain RAM_RS23900 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS23900 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS23905 PF00668 Condensation domain RAM_RS23905 PF00698 Acyl transferase domain RAM_RS23905 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS23905 PF00550 Phosphopantetheine attachment site RAM_RS23905 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS23905 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS23910 PF00550 Phosphopantetheine attachment site RAM_RS23910 PF13193 AMP-binding enzyme C-terminal domain RAM_RS23910 PF00668 Condensation domain RAM_RS23910 PF00501 AMP-binding enzyme RAM_RS23915 PF03621 MbtH-like protein RAM_RS23920 PF07993 Male sterility protein RAM_RS23920 PF00668 Condensation domain RAM_RS23920 PF13193 AMP-binding enzyme C-terminal domain RAM_RS23920 PF00550 Phosphopantetheine attachment site RAM_RS23920 PF00501 AMP-binding enzyme RAM_RS23925 PF13193 AMP-binding enzyme C-terminal domain RAM_RS23925 PF00668 Condensation domain RAM_RS23925 PF00550 Phosphopantetheine attachment site RAM_RS23925 PF00975 Thioesterase domain RAM_RS23925 PF00501 AMP-binding enzyme RAM_RS23940 PF01546 Peptidase family M20/M25/M40 RAM_RS23940 PF07687 Peptidase dimerisation domain RAM_RS23950 PF00155 Aminotransferase class I and II RAM_RS23955 PF00196 Bacterial regulatory proteins, luxR family RAM_RS23960 PF03466 LysR substrate binding domain RAM_RS23960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS23965 PF01494 FAD binding domain RAM_RS23970 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_RS23970 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS24010 PF13378 Enolase C-terminal domain-like RAM_RS24010 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS24015 PF00392 Bacterial regulatory proteins, gntR family RAM_RS24015 PF07729 FCD domain RAM_RS24020 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS24025 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS24030 PF13340 Putative transposase of IS4/5 family (DUF4096) RAM_RS24040 PF03621 MbtH-like protein RAM_RS24045 PF00501 AMP-binding enzyme RAM_RS24045 PF00668 Condensation domain RAM_RS24045 PF13193 AMP-binding enzyme C-terminal domain RAM_RS24045 PF00975 Thioesterase domain RAM_RS24045 PF00550 Phosphopantetheine attachment site RAM_RS24050 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS24055 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_RS24060 PF02310 B12 binding domain RAM_RS24065 PF06368 Methylaspartate mutase E chain (MutE) RAM_RS24075 PF00501 AMP-binding enzyme RAM_RS24075 PF00975 Thioesterase domain RAM_RS24075 PF00550 Phosphopantetheine attachment site RAM_RS24075 PF00668 Condensation domain RAM_RS24075 PF13193 AMP-binding enzyme C-terminal domain RAM_RS24095 PF00550 Phosphopantetheine attachment site RAM_RS24095 PF00668 Condensation domain RAM_RS24095 PF13193 AMP-binding enzyme C-terminal domain RAM_RS24095 PF00501 AMP-binding enzyme RAM_RS24100 PF03704 Bacterial transcriptional activator domain RAM_RS24100 PF00486 Transcriptional regulatory protein, C terminal RAM_RS24100 PF00931 NB-ARC domain RAM_RS24110 PF03704 Bacterial transcriptional activator domain RAM_RS24110 PF00486 Transcriptional regulatory protein, C terminal RAM_RS24110 PF00931 NB-ARC domain RAM_RS24120 PF00376 MerR family regulatory protein RAM_RS24120 PF09278 MerR, DNA binding RAM_RS24160 PF03664 Glycosyl hydrolase family 62 RAM_RS24160 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS24170 PF00067 Cytochrome P450 RAM_RS24190 PF12706 Beta-lactamase superfamily domain RAM_RS24205 PF00072 Response regulator receiver domain RAM_RS24205 PF00196 Bacterial regulatory proteins, luxR family RAM_RS24210 PF00072 Response regulator receiver domain RAM_RS24210 PF00196 Bacterial regulatory proteins, luxR family RAM_RS24220 PF04052 TolB amino-terminal domain RAM_RS24220 PF07676 WD40-like Beta Propeller Repeat RAM_RS24300 PF17758 Proteasomal ATPase OB N-terminal domain RAM_RS24300 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS24300 PF16450 Proteasomal ATPase OB C-terminal domain RAM_RS24325 PF01979 Amidohydrolase family RAM_RS24330 PF01614 Bacterial transcriptional regulator RAM_RS24330 PF09339 IclR helix-turn-helix domain RAM_RS24335 PF02515 CoA-transferase family III RAM_RS24345 PF04444 Catechol dioxygenase N terminus RAM_RS24345 PF00775 Dioxygenase RAM_RS24365 PF02839 Carbohydrate binding domain RAM_RS24375 PF00005 ABC transporter RAM_RS24380 PF00005 ABC transporter RAM_RS24385 PF01494 FAD binding domain RAM_RS24395 PF00106 short chain dehydrogenase RAM_RS24400 PF03466 LysR substrate binding domain RAM_RS24400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS24410 PF02525 Flavodoxin-like fold RAM_RS24415 PF00440 Bacterial regulatory proteins, tetR family RAM_RS24435 PF01037 Lrp/AsnC ligand binding domain RAM_RS24440 PF00557 Metallopeptidase family M24 RAM_RS24440 PF01321 Creatinase/Prolidase N-terminal domain RAM_RS24445 PF01367 5'-3' exonuclease, C-terminal SAM fold RAM_RS24445 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RAM_RS24450 PF17668 Acetyltransferase (GNAT) domain RAM_RS24450 PF13530 Sterol carrier protein domain RAM_RS24455 PF13530 Sterol carrier protein domain RAM_RS24455 PF17668 Acetyltransferase (GNAT) domain RAM_RS24465 PF00271 Helicase conserved C-terminal domain RAM_RS24465 PF08148 DSHCT (NUC185) domain RAM_RS24465 PF00270 DEAD/DEAH box helicase RAM_RS24475 PF00781 Diacylglycerol kinase catalytic domain RAM_RS24480 PF00902 Sec-independent protein translocase protein (TatC) RAM_RS24485 PF02416 mttA/Hcf106 family RAM_RS24495 PF13280 WYL domain RAM_RS24500 PF13280 WYL domain RAM_RS24505 PF01638 HxlR-like helix-turn-helix RAM_RS24515 PF00106 short chain dehydrogenase RAM_RS24525 PF03136 Pup-ligase protein RAM_RS24540 PF00227 Proteasome subunit RAM_RS24545 PF00227 Proteasome subunit RAM_RS24550 PF05639 Pup-like protein RAM_RS24555 PF03136 Pup-ligase protein RAM_RS24560 PF00293 NUDIX domain RAM_RS24595 PF00892 EamA-like transporter family RAM_RS24600 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS24600 PF16450 Proteasomal ATPase OB C-terminal domain RAM_RS24600 PF17758 Proteasomal ATPase OB N-terminal domain RAM_RS24620 PF08704 tRNA methyltransferase complex GCD14 subunit RAM_RS24625 PF00571 CBS domain RAM_RS24625 PF02163 Peptidase family M50 RAM_RS24640 PF13614 AAA domain RAM_RS24645 PF08029 HisG, C-terminal domain RAM_RS24645 PF01634 ATP phosphoribosyltransferase RAM_RS24650 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RAM_RS24655 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_RS24655 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAM_RS24660 PF02805 Metal binding domain of Ada RAM_RS24660 PF06029 AlkA N-terminal domain RAM_RS24660 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_RS24660 PF12833 Helix-turn-helix domain RAM_RS24665 PF13419 Haloacid dehalogenase-like hydrolase RAM_RS24690 PF00149 Calcineurin-like phosphoesterase RAM_RS24700 PF00144 Beta-lactamase RAM_RS24705 PF07690 Major Facilitator Superfamily RAM_RS24720 PF00005 ABC transporter RAM_RS24725 PF01406 tRNA synthetases class I (C) catalytic domain RAM_RS24730 PF07739 TipAS antibiotic-recognition domain RAM_RS24730 PF13411 MerR HTH family regulatory protein RAM_RS24735 PF13382 Adenine deaminase C-terminal domain RAM_RS24735 PF01979 Amidohydrolase family RAM_RS24745 PF01078 Magnesium chelatase, subunit ChlI RAM_RS24745 PF17863 AAA lid domain RAM_RS24760 PF00762 Ferrochelatase RAM_RS24770 PF07690 Major Facilitator Superfamily RAM_RS24785 PF00083 Sugar (and other) transporter RAM_RS24790 PF00486 Transcriptional regulatory protein, C terminal RAM_RS24790 PF00072 Response regulator receiver domain RAM_RS24795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS24795 PF00672 HAMP domain RAM_RS24795 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS24810 PF00588 SpoU rRNA Methylase family RAM_RS24820 PF07584 Aerotolerance regulator N-terminal RAM_RS24820 PF13519 von Willebrand factor type A domain RAM_RS24825 PF01882 Protein of unknown function DUF58 RAM_RS24830 PF07726 ATPase family associated with various cellular activities (AAA) RAM_RS24830 PF17863 AAA lid domain RAM_RS24835 PF12804 MobA-like NTP transferase domain RAM_RS24845 PF00877 NlpC/P60 family RAM_RS24850 PF00330 Aconitase family (aconitate hydratase) RAM_RS24850 PF00694 Aconitase C-terminal domain RAM_RS24855 PF02308 MgtC family RAM_RS24865 PF00440 Bacterial regulatory proteins, tetR family RAM_RS24870 PF00561 alpha/beta hydrolase fold RAM_RS24880 PF10017 Histidine-specific methyltransferase, SAM-dependent RAM_RS24890 PF03781 Sulfatase-modifying factor enzyme 1 RAM_RS24890 PF12867 DinB superfamily RAM_RS24895 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_RS24900 PF03466 LysR substrate binding domain RAM_RS24900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS24905 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RAM_RS24905 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_RS24910 PF00561 alpha/beta hydrolase fold RAM_RS24935 PF00440 Bacterial regulatory proteins, tetR family RAM_RS24940 PF00571 CBS domain RAM_RS24940 PF01595 Cyclin M transmembrane N-terminal domain RAM_RS24940 PF03471 Transporter associated domain RAM_RS24945 PF01595 Cyclin M transmembrane N-terminal domain RAM_RS24945 PF00571 CBS domain RAM_RS24960 PF00248 Aldo/keto reductase family RAM_RS24975 PF01370 NAD dependent epimerase/dehydratase family RAM_RS24985 PF00535 Glycosyl transferase family 2 RAM_RS24990 PF16363 GDP-mannose 4,6 dehydratase RAM_RS24995 PF02347 Glycine cleavage system P-protein RAM_RS25000 PF13411 MerR HTH family regulatory protein RAM_RS25010 PF00085 Thioredoxin RAM_RS25015 PF13411 MerR HTH family regulatory protein RAM_RS25020 PF02577 Bifunctional nuclease RAM_RS25025 PF00376 MerR family regulatory protein RAM_RS25030 PF00498 FHA domain RAM_RS25035 PF01597 Glycine cleavage H-protein RAM_RS25040 PF01066 CDP-alcohol phosphatidyltransferase RAM_RS25060 PF00501 AMP-binding enzyme RAM_RS25060 PF13193 AMP-binding enzyme C-terminal domain RAM_RS25065 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS25070 PF00561 alpha/beta hydrolase fold RAM_RS25075 PF10414 Sirohaem synthase dimerisation region RAM_RS25075 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_RS25090 PF00253 Ribosomal protein S14p/S29e RAM_RS25095 PF00471 Ribosomal protein L33 RAM_RS25100 PF01197 Ribosomal protein L31 RAM_RS25105 PF01783 Ribosomal L32p protein family RAM_RS25120 PF07690 Major Facilitator Superfamily RAM_RS25125 PF01738 Dienelactone hydrolase family RAM_RS25135 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_RS25145 PF00296 Luciferase-like monooxygenase RAM_RS25180 PF00296 Luciferase-like monooxygenase RAM_RS25190 PF00005 ABC transporter RAM_RS25195 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS25200 PF16123 Hydroxyacylglutathione hydrolase C-terminus RAM_RS25200 PF00753 Metallo-beta-lactamase superfamily RAM_RS25205 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RAM_RS25205 PF01409 tRNA synthetases class II core domain (F) RAM_RS25225 PF00005 ABC transporter RAM_RS25225 PF00664 ABC transporter transmembrane region RAM_RS25230 PF00664 ABC transporter transmembrane region RAM_RS25230 PF00005 ABC transporter RAM_RS25235 PF03621 MbtH-like protein RAM_RS25245 PF02261 Aspartate decarboxylase RAM_RS25250 PF00501 AMP-binding enzyme RAM_RS25250 PF00975 Thioesterase domain RAM_RS25250 PF00550 Phosphopantetheine attachment site RAM_RS25250 PF00668 Condensation domain RAM_RS25250 PF13193 AMP-binding enzyme C-terminal domain RAM_RS25255 PF01032 FecCD transport family RAM_RS25260 PF01032 FecCD transport family RAM_RS25265 PF00005 ABC transporter RAM_RS25275 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RAM_RS25280 PF01370 NAD dependent epimerase/dehydratase family RAM_RS25280 PF02911 Formyl transferase, C-terminal domain RAM_RS25280 PF00551 Formyl transferase RAM_RS25290 PF16875 Glycosyl hydrolase family 36 N-terminal domain RAM_RS25290 PF16874 Glycosyl hydrolase family 36 C-terminal domain RAM_RS25300 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS25305 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS25310 PF12848 ABC transporter RAM_RS25310 PF00005 ABC transporter RAM_RS25320 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS25325 PF00553 Cellulose binding domain RAM_RS25325 PF00041 Fibronectin type III domain RAM_RS25325 PF00704 Glycosyl hydrolases family 18 RAM_RS25335 PF00589 Phage integrase family RAM_RS25355 PF13340 Putative transposase of IS4/5 family (DUF4096) RAM_RS25370 PF00589 Phage integrase family RAM_RS25400 PF00149 Calcineurin-like phosphoesterase RAM_RS25400 PF16656 Purple acid Phosphatase, N-terminal domain RAM_RS25405 PF00722 Glycosyl hydrolases family 16 RAM_RS25410 PF00553 Cellulose binding domain RAM_RS25410 PF00331 Glycosyl hydrolase family 10 RAM_RS25415 PF00480 ROK family RAM_RS25415 PF01047 MarR family RAM_RS25420 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_RS25420 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_RS25425 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_RS25425 PF00703 Glycosyl hydrolases family 2 RAM_RS25425 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS25430 PF01270 Glycosyl hydrolases family 8 RAM_RS25445 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS25445 PF13378 Enolase C-terminal domain-like RAM_RS25450 PF00356 Bacterial regulatory proteins, lacI family RAM_RS25455 PF13378 Enolase C-terminal domain-like RAM_RS25455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS25460 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS25470 PF00005 ABC transporter RAM_RS25475 PF00672 HAMP domain RAM_RS25475 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS25475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS25480 PF00072 Response regulator receiver domain RAM_RS25480 PF00486 Transcriptional regulatory protein, C terminal RAM_RS25500 PF00561 alpha/beta hydrolase fold RAM_RS25505 PF07690 Major Facilitator Superfamily RAM_RS25510 PF01047 MarR family RAM_RS25515 PF00230 Major intrinsic protein RAM_RS25525 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS25525 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS25525 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS25530 PF01738 Dienelactone hydrolase family RAM_RS25540 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_RS25550 PF01494 FAD binding domain RAM_RS25560 PF03466 LysR substrate binding domain RAM_RS25560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS25570 PF00005 ABC transporter RAM_RS25575 PF02653 Branched-chain amino acid transport system / permease component RAM_RS25585 PF04542 Sigma-70 region 2 RAM_RS25585 PF08281 Sigma-70, region 4 RAM_RS25595 PF06689 ClpX C4-type zinc finger RAM_RS25595 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_RS25595 PF07724 AAA domain (Cdc48 subfamily) RAM_RS25615 PF01183 Glycosyl hydrolases family 25 RAM_RS25620 PF06969 HemN C-terminal domain RAM_RS25620 PF04055 Radical SAM superfamily RAM_RS25625 PF00535 Glycosyl transferase family 2 RAM_RS25635 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain RAM_RS25635 PF08531 Alpha-L-rhamnosidase N-terminal domain RAM_RS25635 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain RAM_RS25635 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain RAM_RS25660 PF00106 short chain dehydrogenase RAM_RS25670 PF09106 Elongation factor SelB, winged helix RAM_RS25670 PF03144 Elongation factor Tu domain 2 RAM_RS25670 PF00009 Elongation factor Tu GTP binding domain RAM_RS25670 PF09107 Elongation factor SelB, winged helix RAM_RS25670 PF09106 Elongation factor SelB, winged helix RAM_RS25670 PF09105 Elongation factor SelB, winged helix RAM_RS25670 PF03144 Elongation factor Tu domain 2 RAM_RS25670 PF00009 Elongation factor Tu GTP binding domain RAM_RS25670 PF09107 Elongation factor SelB, winged helix RAM_RS25670 PF09105 Elongation factor SelB, winged helix RAM_RS25675 PF12390 Selenocysteine synthase N terminal RAM_RS25675 PF03841 L-seryl-tRNA selenium transferase RAM_RS25685 PF02769 AIR synthase related protein, C-terminal domain RAM_RS25685 PF00586 AIR synthase related protein, N-terminal domain RAM_RS25710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS25720 PF02525 Flavodoxin-like fold RAM_RS25735 PF00561 alpha/beta hydrolase fold RAM_RS25735 PF08386 TAP-like protein RAM_RS25740 PF01494 FAD binding domain RAM_RS25770 PF00561 alpha/beta hydrolase fold RAM_RS25775 PF00440 Bacterial regulatory proteins, tetR family RAM_RS25785 PF02983 Alpha-lytic protease prodomain RAM_RS25830 PF03176 MMPL family RAM_RS25850 PF02675 S-adenosylmethionine decarboxylase RAM_RS25855 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_RS25855 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_RS25905 PF01339 CheB methylesterase RAM_RS25905 PF00072 Response regulator receiver domain RAM_RS25910 PF00672 HAMP domain RAM_RS25910 PF07730 Histidine kinase RAM_RS25910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS25920 PF00072 Response regulator receiver domain RAM_RS25920 PF00196 Bacterial regulatory proteins, luxR family RAM_RS25935 PF03091 CutA1 divalent ion tolerance protein RAM_RS25940 PF00012 Hsp70 protein RAM_RS25950 PF00350 Dynamin family RAM_RS25955 PF00350 Dynamin family RAM_RS25975 PF01494 FAD binding domain RAM_RS25980 PF02310 B12 binding domain RAM_RS25980 PF02574 Homocysteine S-methyltransferase RAM_RS25980 PF02607 B12 binding domain RAM_RS25980 PF00809 Pterin binding enzyme RAM_RS25980 PF02965 Vitamin B12 dependent methionine synthase, activation domain RAM_RS25985 PF00296 Luciferase-like monooxygenase RAM_RS25990 PF00083 Sugar (and other) transporter RAM_RS25995 PF00942 Cellulose binding domain RAM_RS25995 PF03442 Carbohydrate binding domain X2 RAM_RS26000 PF00107 Zinc-binding dehydrogenase RAM_RS26000 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS26025 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_RS26025 PF00553 Cellulose binding domain RAM_RS26030 PF00248 Aldo/keto reductase family RAM_RS26040 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RAM_RS26040 PF00553 Cellulose binding domain RAM_RS26045 PF00356 Bacterial regulatory proteins, lacI family RAM_RS26055 PF01341 Glycosyl hydrolases family 6 RAM_RS26055 PF00553 Cellulose binding domain RAM_RS26055 PF00041 Fibronectin type III domain RAM_RS26060 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_RS26060 PF00553 Cellulose binding domain RAM_RS26065 PF00041 Fibronectin type III domain RAM_RS26065 PF00553 Cellulose binding domain RAM_RS26065 PF02011 Glycosyl hydrolase family 48 RAM_RS26070 PF00356 Bacterial regulatory proteins, lacI family RAM_RS26080 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS26085 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS26090 PF00232 Glycosyl hydrolase family 1 RAM_RS26095 PF00920 Dehydratase family RAM_RS26105 PF00571 CBS domain RAM_RS26110 PF03167 Uracil DNA glycosylase superfamily RAM_RS26115 PF13298 DNA polymerase Ligase (LigD) RAM_RS26115 PF01068 ATP dependent DNA ligase domain RAM_RS26115 PF04679 ATP dependent DNA ligase C terminal region RAM_RS26120 PF04679 ATP dependent DNA ligase C terminal region RAM_RS26120 PF01068 ATP dependent DNA ligase domain RAM_RS26120 PF13298 DNA polymerase Ligase (LigD) RAM_RS26125 PF02735 Ku70/Ku80 beta-barrel domain RAM_RS26150 PF00296 Luciferase-like monooxygenase RAM_RS26160 PF13581 Histidine kinase-like ATPase domain RAM_RS26165 PF04539 Sigma-70 region 3 RAM_RS26165 PF04542 Sigma-70 region 2 RAM_RS26165 PF04545 Sigma-70, region 4 RAM_RS26170 PF01928 CYTH domain RAM_RS26170 PF05235 CHAD domain RAM_RS26190 PF03364 Polyketide cyclase / dehydrase and lipid transport RAM_RS26225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS26225 PF03466 LysR substrate binding domain RAM_RS26230 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_RS26230 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_RS26255 PF07690 Major Facilitator Superfamily RAM_RS26255 PF00083 Sugar (and other) transporter RAM_RS26260 PF00583 Acetyltransferase (GNAT) family RAM_RS26270 PF05593 RHS Repeat RAM_RS26270 PF05488 PAAR motif RAM_RS26315 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_RS26315 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_RS26320 PF01799 [2Fe-2S] binding domain RAM_RS26320 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS26325 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS26325 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_RS26345 PF00356 Bacterial regulatory proteins, lacI family RAM_RS26350 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS26350 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS26350 PF14310 Fibronectin type III-like domain RAM_RS26355 PF00722 Glycosyl hydrolases family 16 RAM_RS26365 PF01494 FAD binding domain RAM_RS26370 PF00753 Metallo-beta-lactamase superfamily RAM_RS26380 PF00925 GTP cyclohydrolase II RAM_RS26395 PF11799 impB/mucB/samB family C-terminal domain RAM_RS26395 PF00817 impB/mucB/samB family RAM_RS26410 PF00583 Acetyltransferase (GNAT) family RAM_RS26415 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RAM_RS26415 PF05221 S-adenosyl-L-homocysteine hydrolase RAM_RS26430 PF02735 Ku70/Ku80 beta-barrel domain RAM_RS26450 PF03259 Roadblock/LC7 domain RAM_RS26455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS26465 PF00005 ABC transporter RAM_RS26465 PF00664 ABC transporter transmembrane region RAM_RS26470 PF00664 ABC transporter transmembrane region RAM_RS26470 PF00005 ABC transporter RAM_RS26475 PF01068 ATP dependent DNA ligase domain RAM_RS26475 PF13298 DNA polymerase Ligase (LigD) RAM_RS26475 PF04679 ATP dependent DNA ligase C terminal region RAM_RS26490 PF00486 Transcriptional regulatory protein, C terminal RAM_RS26490 PF00931 NB-ARC domain RAM_RS26490 PF03704 Bacterial transcriptional activator domain RAM_RS26495 PF01965 DJ-1/PfpI family RAM_RS26500 PF01965 DJ-1/PfpI family RAM_RS26515 PF00753 Metallo-beta-lactamase superfamily RAM_RS26535 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS26535 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS26535 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS26540 PF00561 alpha/beta hydrolase fold RAM_RS26565 PF01979 Amidohydrolase family RAM_RS26570 PF02824 TGS domain RAM_RS26570 PF04607 Region found in RelA / SpoT proteins RAM_RS26570 PF13291 ACT domain RAM_RS26575 PF00156 Phosphoribosyl transferase domain RAM_RS26580 PF02355 Protein export membrane protein RAM_RS26580 PF07549 SecD/SecF GG Motif RAM_RS26585 PF02355 Protein export membrane protein RAM_RS26585 PF07549 SecD/SecF GG Motif RAM_RS26590 PF02699 Preprotein translocase subunit RAM_RS26595 PF17864 RuvB AAA lid domain RAM_RS26595 PF05491 RuvB C-terminal winged helix domain RAM_RS26595 PF05496 Holliday junction DNA helicase RuvB P-loop domain RAM_RS26600 PF01330 RuvA N terminal domain RAM_RS26600 PF07499 RuvA, C-terminal domain RAM_RS26605 PF02075 Crossover junction endodeoxyribonuclease RuvC RAM_RS26620 PF01709 Transcriptional regulator RAM_RS26625 PF01174 SNO glutamine amidotransferase family RAM_RS26640 PF01381 Helix-turn-helix RAM_RS26640 PF08671 Anti-repressor SinI RAM_RS26645 PF01494 FAD binding domain RAM_RS26650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS26650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS26650 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS26655 PF13193 AMP-binding enzyme C-terminal domain RAM_RS26655 PF00668 Condensation domain RAM_RS26655 PF00550 Phosphopantetheine attachment site RAM_RS26655 PF00501 AMP-binding enzyme RAM_RS26670 PF01680 SOR/SNZ family RAM_RS26680 PF01565 FAD binding domain RAM_RS26680 PF08031 Berberine and berberine like RAM_RS26685 PF03144 Elongation factor Tu domain 2 RAM_RS26685 PF00009 Elongation factor Tu GTP binding domain RAM_RS26685 PF03764 Elongation factor G, domain IV RAM_RS26685 PF00679 Elongation factor G C-terminus RAM_RS26685 PF14492 Elongation Factor G, domain II RAM_RS26690 PF13478 XdhC Rossmann domain RAM_RS26690 PF02625 XdhC and CoxI family RAM_RS26710 PF13439 Glycosyltransferase Family 4 RAM_RS26715 PF03279 Bacterial lipid A biosynthesis acyltransferase RAM_RS26720 PF01066 CDP-alcohol phosphatidyltransferase RAM_RS26730 PF01230 HIT domain RAM_RS26735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_RS26735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RAM_RS26735 PF03129 Anticodon binding domain RAM_RS26740 PF00881 Nitroreductase family RAM_RS26745 PF02397 Bacterial sugar transferase RAM_RS26755 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_RS26780 PF13180 PDZ domain RAM_RS26780 PF00595 PDZ domain RAM_RS26785 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS26785 PF06480 FtsH Extracellular RAM_RS26785 PF01434 Peptidase family M41 RAM_RS26785 PF17862 AAA+ lid domain RAM_RS26790 PF03773 Predicted permease RAM_RS26810 PF00106 short chain dehydrogenase RAM_RS26815 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS26820 PF13193 AMP-binding enzyme C-terminal domain RAM_RS26820 PF00501 AMP-binding enzyme RAM_RS26825 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS26825 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_RS26835 PF01546 Peptidase family M20/M25/M40 RAM_RS26835 PF07687 Peptidase dimerisation domain RAM_RS26850 PF13382 Adenine deaminase C-terminal domain RAM_RS26850 PF01979 Amidohydrolase family RAM_RS26865 PF01494 FAD binding domain RAM_RS26875 PF13193 AMP-binding enzyme C-terminal domain RAM_RS26875 PF00501 AMP-binding enzyme RAM_RS26900 PF16925 Tetracyclin repressor-like, C-terminal domain RAM_RS26900 PF00440 Bacterial regulatory proteins, tetR family RAM_RS26910 PF00781 Diacylglycerol kinase catalytic domain RAM_RS26945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_RS26945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_RS26945 PF01842 ACT domain RAM_RS26950 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS26955 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS26965 PF00356 Bacterial regulatory proteins, lacI family RAM_RS26970 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS26980 PF07690 Major Facilitator Superfamily RAM_RS26990 PF00106 short chain dehydrogenase RAM_RS26995 PF00440 Bacterial regulatory proteins, tetR family RAM_RS26995 PF08361 MAATS-type transcriptional repressor, C-terminal region RAM_RS27045 PF07729 FCD domain RAM_RS27045 PF00392 Bacterial regulatory proteins, gntR family RAM_RS27065 PF00583 Acetyltransferase (GNAT) family RAM_RS27085 PF00732 GMC oxidoreductase RAM_RS27085 PF05199 GMC oxidoreductase RAM_RS27090 PF00483 Nucleotidyl transferase RAM_RS27095 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS27095 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS27095 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS27095 PF00550 Phosphopantetheine attachment site RAM_RS27095 PF00202 Aminotransferase class-III RAM_RS27095 PF00668 Condensation domain RAM_RS27095 PF13193 AMP-binding enzyme C-terminal domain RAM_RS27095 PF00501 AMP-binding enzyme RAM_RS27115 PF06722 Protein of unknown function (DUF1205) RAM_RS27125 PF03301 Tryptophan 2,3-dioxygenase RAM_RS27135 PF03559 NDP-hexose 2,3-dehydratase RAM_RS27140 PF00072 Response regulator receiver domain RAM_RS27140 PF00196 Bacterial regulatory proteins, luxR family RAM_RS27145 PF07730 Histidine kinase RAM_RS27155 PF00005 ABC transporter RAM_RS27165 PF17843 MycE methyltransferase N-terminal RAM_RS27170 PF00501 AMP-binding enzyme RAM_RS27170 PF00668 Condensation domain RAM_RS27170 PF13193 AMP-binding enzyme C-terminal domain RAM_RS27170 PF00550 Phosphopantetheine attachment site RAM_RS27170 PF00975 Thioesterase domain RAM_RS27175 PF06722 Protein of unknown function (DUF1205) RAM_RS27180 PF06722 Protein of unknown function (DUF1205) RAM_RS27185 PF06722 Protein of unknown function (DUF1205) RAM_RS27190 PF06722 Protein of unknown function (DUF1205) RAM_RS27195 PF06722 Protein of unknown function (DUF1205) RAM_RS27205 PF00005 ABC transporter RAM_RS27205 PF13732 Domain of unknown function (DUF4162) RAM_RS27215 PF06722 Protein of unknown function (DUF1205) RAM_RS27220 PF06722 Protein of unknown function (DUF1205) RAM_RS27225 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_RS27230 PF00486 Transcriptional regulatory protein, C terminal RAM_RS27230 PF03704 Bacterial transcriptional activator domain RAM_RS27235 PF06722 Protein of unknown function (DUF1205) RAM_RS27240 PF00391 PEP-utilising enzyme, mobile domain RAM_RS27240 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RAM_RS27245 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_RS27245 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_RS27285 PF03364 Polyketide cyclase / dehydrase and lipid transport RAM_RS27290 PF00550 Phosphopantetheine attachment site RAM_RS27295 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS27295 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS27300 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS27300 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS27305 PF07883 Cupin domain RAM_RS27310 PF04673 Polyketide synthesis cyclase RAM_RS27320 PF00854 POT family RAM_RS27325 PF00891 O-methyltransferase domain RAM_RS27325 PF16864 Dimerisation domain RAM_RS27330 PF01494 FAD binding domain RAM_RS27335 PF01494 FAD binding domain RAM_RS27345 PF00296 Luciferase-like monooxygenase RAM_RS27355 PF00067 Cytochrome P450 RAM_RS27360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS27370 PF16363 GDP-mannose 4,6 dehydratase RAM_RS27375 PF01370 NAD dependent epimerase/dehydratase family RAM_RS27390 PF00196 Bacterial regulatory proteins, luxR family RAM_RS27395 PF05593 RHS Repeat RAM_RS27395 PF03527 RHS protein RAM_RS27425 PF00916 Sulfate permease family RAM_RS27425 PF01740 STAS domain RAM_RS27435 PF00582 Universal stress protein family RAM_RS27455 PF00689 Cation transporting ATPase, C-terminus RAM_RS27455 PF00690 Cation transporter/ATPase, N-terminus RAM_RS27470 PF00871 Acetokinase family RAM_RS27475 PF13607 Succinyl-CoA ligase like flavodoxin domain RAM_RS27475 PF13380 CoA binding domain RAM_RS27480 PF13492 GAF domain RAM_RS27480 PF13185 GAF domain RAM_RS27480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS27480 PF07730 Histidine kinase RAM_RS27490 PF00196 Bacterial regulatory proteins, luxR family RAM_RS27490 PF00072 Response regulator receiver domain RAM_RS27495 PF01654 Cytochrome bd terminal oxidase subunit I RAM_RS27500 PF02322 Cytochrome bd terminal oxidase subunit II RAM_RS27505 PF00005 ABC transporter RAM_RS27505 PF00664 ABC transporter transmembrane region RAM_RS27510 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase RAM_RS27510 PF09363 XFP C-terminal domain RAM_RS27510 PF09364 XFP N-terminal domain RAM_RS27515 PF00582 Universal stress protein family RAM_RS27520 PF01743 Poly A polymerase head domain RAM_RS27520 PF00571 CBS domain RAM_RS27525 PF00582 Universal stress protein family RAM_RS27540 PF00582 Universal stress protein family RAM_RS27555 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_RS27565 PF12900 Pyridoxamine 5'-phosphate oxidase RAM_RS27575 PF07730 Histidine kinase RAM_RS27580 PF00196 Bacterial regulatory proteins, luxR family RAM_RS27580 PF00072 Response regulator receiver domain RAM_RS27600 PF07730 Histidine kinase RAM_RS27600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS27605 PF00072 Response regulator receiver domain RAM_RS27605 PF00196 Bacterial regulatory proteins, luxR family RAM_RS27625 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_RS27630 PF01047 MarR family RAM_RS27655 PF07730 Histidine kinase RAM_RS27655 PF17200 Single Cache domain 2 RAM_RS27660 PF00196 Bacterial regulatory proteins, luxR family RAM_RS27660 PF00072 Response regulator receiver domain RAM_RS27700 PF10502 Signal peptidase, peptidase S26 RAM_RS27740 PF00067 Cytochrome P450 RAM_RS27760 PF00296 Luciferase-like monooxygenase RAM_RS27770 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS27770 PF08448 PAS fold RAM_RS27790 PF07690 Major Facilitator Superfamily RAM_RS27800 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_RS27800 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_RS27815 PF02709 N-terminal domain of galactosyltransferase RAM_RS27815 PF00535 Glycosyl transferase family 2 RAM_RS27820 PF00535 Glycosyl transferase family 2 RAM_RS27825 PF00664 ABC transporter transmembrane region RAM_RS27825 PF00005 ABC transporter RAM_RS27830 PF00005 ABC transporter RAM_RS27830 PF00664 ABC transporter transmembrane region RAM_RS27850 PF06441 Epoxide hydrolase N terminus RAM_RS27855 PF07859 alpha/beta hydrolase fold RAM_RS27905 PF07690 Major Facilitator Superfamily RAM_RS27920 PF00486 Transcriptional regulatory protein, C terminal RAM_RS27920 PF00931 NB-ARC domain RAM_RS27920 PF03704 Bacterial transcriptional activator domain RAM_RS27930 PF03551 Transcriptional regulator PadR-like family RAM_RS27930 PF13847 Methyltransferase domain RAM_RS27950 PF00704 Glycosyl hydrolases family 18 RAM_RS27960 PF03358 NADPH-dependent FMN reductase RAM_RS27975 PF13185 GAF domain RAM_RS27975 PF13492 GAF domain RAM_RS27975 PF07730 Histidine kinase RAM_RS27975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS27985 PF00196 Bacterial regulatory proteins, luxR family RAM_RS27985 PF00072 Response regulator receiver domain RAM_RS27995 PF01145 SPFH domain / Band 7 family RAM_RS27995 PF16200 C-terminal region of band_7 RAM_RS28005 PF00156 Phosphoribosyl transferase domain RAM_RS28005 PF05139 Erythromycin esterase RAM_RS28050 PF01594 AI-2E family transporter RAM_RS28070 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_RS28115 PF00072 Response regulator receiver domain RAM_RS28115 PF00486 Transcriptional regulatory protein, C terminal RAM_RS28120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS28120 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS28120 PF00672 HAMP domain RAM_RS28130 PF00534 Glycosyl transferases group 1 RAM_RS28130 PF13439 Glycosyltransferase Family 4 RAM_RS28135 PF01494 FAD binding domain RAM_RS28170 PF00440 Bacterial regulatory proteins, tetR family RAM_RS28170 PF17754 MftR C-terminal domain RAM_RS28175 PF08281 Sigma-70, region 4 RAM_RS28175 PF04542 Sigma-70 region 2 RAM_RS28180 PF08281 Sigma-70, region 4 RAM_RS28180 PF04542 Sigma-70 region 2 RAM_RS28205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS28205 PF03466 LysR substrate binding domain RAM_RS28245 PF00069 Protein kinase domain RAM_RS28250 PF08281 Sigma-70, region 4 RAM_RS28250 PF04542 Sigma-70 region 2 RAM_RS28250 PF12680 SnoaL-like domain RAM_RS28255 PF04072 Leucine carboxyl methyltransferase RAM_RS28265 PF00067 Cytochrome P450 RAM_RS28275 PF00067 Cytochrome P450 RAM_RS28285 PF01494 FAD binding domain RAM_RS28310 PF06441 Epoxide hydrolase N terminus RAM_RS28315 PF06441 Epoxide hydrolase N terminus RAM_RS28325 PF00156 Phosphoribosyl transferase domain RAM_RS28330 PF12697 Alpha/beta hydrolase family RAM_RS28335 PF00196 Bacterial regulatory proteins, luxR family RAM_RS28340 PF13191 AAA ATPase domain RAM_RS28340 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_RS28375 PF07690 Major Facilitator Superfamily RAM_RS28385 PF00196 Bacterial regulatory proteins, luxR family RAM_RS28400 PF00005 ABC transporter RAM_RS28440 PF12849 PBP superfamily domain RAM_RS28445 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS28450 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS28460 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS28460 PF00672 HAMP domain RAM_RS28460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS28465 PF00072 Response regulator receiver domain RAM_RS28465 PF00486 Transcriptional regulatory protein, C terminal RAM_RS28470 PF00535 Glycosyl transferase family 2 RAM_RS28475 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RAM_RS28485 PF07690 Major Facilitator Superfamily RAM_RS28490 PF01494 FAD binding domain RAM_RS28500 PF00356 Bacterial regulatory proteins, lacI family RAM_RS28510 PF16295 Tetracyclin repressor-like, C-terminal domain RAM_RS28510 PF00440 Bacterial regulatory proteins, tetR family RAM_RS28535 PF00561 alpha/beta hydrolase fold RAM_RS28565 PF08281 Sigma-70, region 4 RAM_RS28565 PF04542 Sigma-70 region 2 RAM_RS28585 PF00857 Isochorismatase family RAM_RS28595 PF08386 TAP-like protein RAM_RS28595 PF00561 alpha/beta hydrolase fold RAM_RS28615 PF01494 FAD binding domain RAM_RS28620 PF00440 Bacterial regulatory proteins, tetR family RAM_RS28620 PF09209 Tetracyclin repressor-like, C-terminal domain RAM_RS28635 PF01593 Flavin containing amine oxidoreductase RAM_RS28640 PF09339 IclR helix-turn-helix domain RAM_RS28640 PF01614 Bacterial transcriptional regulator RAM_RS28655 PF00561 alpha/beta hydrolase fold RAM_RS28660 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RAM_RS28665 PF00313 'Cold-shock' DNA-binding domain RAM_RS28670 PF00440 Bacterial regulatory proteins, tetR family RAM_RS28670 PF08361 MAATS-type transcriptional repressor, C-terminal region RAM_RS28680 PF00106 short chain dehydrogenase RAM_RS28690 PF03795 YCII-related domain RAM_RS28700 PF16353 Domain of unknown function(DUF4981) RAM_RS28700 PF02929 Beta galactosidase small chain RAM_RS28700 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_RS28700 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS28700 PF00703 Glycosyl hydrolases family 2 RAM_RS28705 PF00999 Sodium/hydrogen exchanger family RAM_RS28705 PF02080 TrkA-C domain RAM_RS28705 PF03471 Transporter associated domain RAM_RS28715 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAM_RS28720 PF00355 Rieske [2Fe-2S] domain RAM_RS28725 PF13631 Cytochrome b(N-terminal)/b6/petB RAM_RS28730 PF13631 Cytochrome b(N-terminal)/b6/petB RAM_RS28755 PF01494 FAD binding domain RAM_RS28765 PF00486 Transcriptional regulatory protein, C terminal RAM_RS28765 PF00072 Response regulator receiver domain RAM_RS28770 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS28770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS28770 PF00672 HAMP domain RAM_RS28785 PF01638 HxlR-like helix-turn-helix RAM_RS28795 PF01047 MarR family RAM_RS28800 PF00654 Voltage gated chloride channel RAM_RS28830 PF01568 Molydopterin dinucleotide binding domain RAM_RS28830 PF00384 Molybdopterin oxidoreductase RAM_RS28830 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS28835 PF00384 Molybdopterin oxidoreductase RAM_RS28835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS28835 PF01568 Molydopterin dinucleotide binding domain RAM_RS28840 PF13247 4Fe-4S dicluster domain RAM_RS28840 PF12800 4Fe-4S binding domain RAM_RS28875 PF01226 Formate/nitrite transporter RAM_RS28880 PF03600 Citrate transporter RAM_RS28900 PF13520 Amino acid permease RAM_RS28905 PF04072 Leucine carboxyl methyltransferase RAM_RS28925 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_RS28925 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_RS28930 PF01799 [2Fe-2S] binding domain RAM_RS28930 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS28940 PF00248 Aldo/keto reductase family RAM_RS28945 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS28945 PF00107 Zinc-binding dehydrogenase RAM_RS28945 PF13823 Alcohol dehydrogenase GroES-associated RAM_RS28960 PF00248 Aldo/keto reductase family RAM_RS28985 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain RAM_RS28985 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain RAM_RS28985 PF08531 Alpha-L-rhamnosidase N-terminal domain RAM_RS28985 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain RAM_RS28990 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS28995 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS29000 PF00356 Bacterial regulatory proteins, lacI family RAM_RS29005 PF00356 Bacterial regulatory proteins, lacI family RAM_RS29025 PF00356 Bacterial regulatory proteins, lacI family RAM_RS29045 PF02311 AraC-like ligand binding domain RAM_RS29045 PF12833 Helix-turn-helix domain RAM_RS29050 PF08531 Alpha-L-rhamnosidase N-terminal domain RAM_RS29050 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain RAM_RS29050 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain RAM_RS29050 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain RAM_RS29060 PF00196 Bacterial regulatory proteins, luxR family RAM_RS29180 PF13340 Putative transposase of IS4/5 family (DUF4096) RAM_RS29200 PF09704 CRISPR-associated protein (Cas_Cas5) RAM_RS29205 PF09344 CT1975-like protein RAM_RS29225 PF18395 Cas3 C-terminal domain RAM_RS29225 PF18019 HD domain RAM_RS29320 PF02011 Glycosyl hydrolase family 48 RAM_RS29320 PF00041 Fibronectin type III domain RAM_RS29320 PF00553 Cellulose binding domain RAM_RS29335 PF00011 Hsp20/alpha crystallin family RAM_RS29345 PF01425 Amidase RAM_RS29350 PF09278 MerR, DNA binding RAM_RS29350 PF00376 MerR family regulatory protein RAM_RS29355 PF01022 Bacterial regulatory protein, arsR family RAM_RS29360 PF01545 Cation efflux family RAM_RS29360 PF16916 Dimerisation domain of Zinc Transporter RAM_RS29375 PF00455 DeoR C terminal sensor domain RAM_RS29375 PF08220 DeoR-like helix-turn-helix domain RAM_RS29385 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS29385 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS29410 PF01547 Bacterial extracellular solute-binding protein RAM_RS29425 PF16919 Protein kinase G rubredoxin domain RAM_RS29425 PF16918 Protein kinase G tetratricopeptide repeat RAM_RS29425 PF00069 Protein kinase domain RAM_RS29440 PF00005 ABC transporter RAM_RS29440 PF08402 TOBE domain RAM_RS29450 PF04199 Putative cyclase RAM_RS29455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS29455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS29455 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS29475 PF00196 Bacterial regulatory proteins, luxR family RAM_RS29475 PF00072 Response regulator receiver domain RAM_RS29485 PF02525 Flavodoxin-like fold RAM_RS29490 PF01047 MarR family RAM_RS29495 PF02355 Protein export membrane protein RAM_RS29505 PF13460 NAD(P)H-binding RAM_RS29505 PF11066 Protein of unknown function (DUF2867) RAM_RS29515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS29515 PF03466 LysR substrate binding domain RAM_RS29530 PF13291 ACT domain RAM_RS29530 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS29545 PF00877 NlpC/P60 family RAM_RS29565 PF07497 Rho termination factor, RNA-binding domain RAM_RS29565 PF07498 Rho termination factor, N-terminal domain RAM_RS29565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_RS29580 PF00331 Glycosyl hydrolase family 10 RAM_RS29580 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS29590 PF00106 short chain dehydrogenase RAM_RS29595 PF00106 short chain dehydrogenase RAM_RS29600 PF01256 Carbohydrate kinase RAM_RS29605 PF13456 Reverse transcriptase-like RAM_RS29605 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS29610 PF08448 PAS fold RAM_RS29610 PF13581 Histidine kinase-like ATPase domain RAM_RS29610 PF07228 Stage II sporulation protein E (SpoIIE) RAM_RS29610 PF13466 STAS domain RAM_RS29625 PF13581 Histidine kinase-like ATPase domain RAM_RS29625 PF08448 PAS fold RAM_RS29625 PF13466 STAS domain RAM_RS29625 PF07228 Stage II sporulation protein E (SpoIIE) RAM_RS29635 PF13426 PAS domain RAM_RS29635 PF08448 PAS fold RAM_RS29635 PF00072 Response regulator receiver domain RAM_RS29635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS29635 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS29655 PF09137 Glucodextranase, domain N RAM_RS29655 PF00723 Glycosyl hydrolases family 15 RAM_RS29660 PF04978 Protein of unknown function (DUF664) RAM_RS29665 PF00248 Aldo/keto reductase family RAM_RS29680 PF08386 TAP-like protein RAM_RS29680 PF00561 alpha/beta hydrolase fold RAM_RS29690 PF03704 Bacterial transcriptional activator domain RAM_RS29690 PF00931 NB-ARC domain RAM_RS29690 PF00486 Transcriptional regulatory protein, C terminal RAM_RS29750 PF00589 Phage integrase family RAM_RS29750 PF02899 Phage integrase, N-terminal SAM-like domain RAM_RS29755 PF00171 Aldehyde dehydrogenase family RAM_RS29805 PF01625 Peptide methionine sulfoxide reductase RAM_RS29810 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_RS29810 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_RS29810 PF04389 Peptidase family M28 RAM_RS29810 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_RS29810 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_RS29810 PF04389 Peptidase family M28 RAM_RS29820 PF00005 ABC transporter RAM_RS29820 PF13732 Domain of unknown function (DUF4162) RAM_RS29825 PF01061 ABC-2 type transporter RAM_RS29830 PF04075 F420H(2)-dependent quinone reductase RAM_RS29840 PF00106 short chain dehydrogenase RAM_RS29845 PF00069 Protein kinase domain RAM_RS29845 PF03793 PASTA domain RAM_RS29860 PF02146 Sir2 family RAM_RS29870 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_RS29870 PF10531 SLBB domain RAM_RS29870 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RAM_RS29890 PF04185 Phosphoesterase family RAM_RS29915 PF10503 Esterase PHB depolymerase RAM_RS29935 PF00083 Sugar (and other) transporter RAM_RS29965 PF13193 AMP-binding enzyme C-terminal domain RAM_RS29965 PF00501 AMP-binding enzyme RAM_RS29990 PF07728 AAA domain (dynein-related subfamily) RAM_RS30000 PF05762 VWA domain containing CoxE-like protein RAM_RS30005 PF00444 Ribosomal protein L36 RAM_RS30015 PF01638 HxlR-like helix-turn-helix RAM_RS30020 PF00743 Flavin-binding monooxygenase-like RAM_RS30025 PF02278 Polysaccharide lyase family 8, super-sandwich domain RAM_RS30025 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain RAM_RS30025 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain RAM_RS30030 PF00171 Aldehyde dehydrogenase family RAM_RS30040 PF13378 Enolase C-terminal domain-like RAM_RS30040 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS30045 PF00701 Dihydrodipicolinate synthetase family RAM_RS30055 PF01614 Bacterial transcriptional regulator RAM_RS30060 PF16363 GDP-mannose 4,6 dehydratase RAM_RS30075 PF01522 Polysaccharide deacetylase RAM_RS30085 PF00196 Bacterial regulatory proteins, luxR family RAM_RS30085 PF00072 Response regulator receiver domain RAM_RS30110 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS30125 PF00465 Iron-containing alcohol dehydrogenase RAM_RS30130 PF01494 FAD binding domain RAM_RS30135 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_RS30150 PF11838 ERAP1-like C-terminal domain RAM_RS30150 PF01433 Peptidase family M1 domain RAM_RS30155 PF00501 AMP-binding enzyme RAM_RS30155 PF13193 AMP-binding enzyme C-terminal domain RAM_RS30155 PF00668 Condensation domain RAM_RS30155 PF00550 Phosphopantetheine attachment site RAM_RS30160 PF01926 50S ribosome-binding GTPase RAM_RS30160 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RAM_RS30170 PF02224 Cytidylate kinase RAM_RS30190 PF00999 Sodium/hydrogen exchanger family RAM_RS30195 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS30195 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_RS30200 PF04072 Leucine carboxyl methyltransferase RAM_RS30205 PF01479 S4 domain RAM_RS30205 PF00849 RNA pseudouridylate synthase RAM_RS30210 PF04079 Segregation and condensation complex subunit ScpB RAM_RS30215 PF02616 Segregation and condensation protein ScpA RAM_RS30225 PF13614 AAA domain RAM_RS30230 PF00589 Phage integrase family RAM_RS30230 PF02899 Phage integrase, N-terminal SAM-like domain RAM_RS30240 PF00293 NUDIX domain RAM_RS30245 PF06418 CTP synthase N-terminus RAM_RS30245 PF00117 Glutamine amidotransferase class-I RAM_RS30255 PF00392 Bacterial regulatory proteins, gntR family RAM_RS30255 PF07729 FCD domain RAM_RS30260 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RAM_RS30265 PF01177 Asp/Glu/Hydantoin racemase RAM_RS30280 PF11382 Copper transport outer membrane protein, MctB RAM_RS30295 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS30295 PF00107 Zinc-binding dehydrogenase RAM_RS30305 PF02463 RecF/RecN/SMC N terminal domain RAM_RS30310 PF01513 ATP-NAD kinase RAM_RS30315 PF01728 FtsJ-like methyltransferase RAM_RS30315 PF01479 S4 domain RAM_RS30325 PF18407 GCN5-related N-acetyltransferase like domain RAM_RS30325 PF13344 Haloacid dehalogenase-like hydrolase RAM_RS30350 PF00579 tRNA synthetases class I (W and Y) RAM_RS30355 PF02245 Methylpurine-DNA glycosylase (MPG) RAM_RS30365 PF13761 Domain of unknown function (DUF4166) RAM_RS30375 PF14698 Argininosuccinate lyase C-terminal RAM_RS30375 PF00206 Lyase RAM_RS30380 PF00764 Arginosuccinate synthase RAM_RS30385 PF01316 Arginine repressor, DNA binding domain RAM_RS30385 PF02863 Arginine repressor, C-terminal domain RAM_RS30390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RAM_RS30390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RAM_RS30395 PF00202 Aminotransferase class-III RAM_RS30400 PF00696 Amino acid kinase family RAM_RS30405 PF01960 ArgJ family RAM_RS30410 PF01118 Semialdehyde dehydrogenase, NAD binding domain RAM_RS30410 PF02774 Semialdehyde dehydrogenase, dimerisation domain RAM_RS30425 PF00561 alpha/beta hydrolase fold RAM_RS30435 PF03483 B3/4 domain RAM_RS30435 PF03147 Ferredoxin-fold anticodon binding domain RAM_RS30435 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RAM_RS30435 PF03484 tRNA synthetase B5 domain RAM_RS30435 PF01588 Putative tRNA binding domain RAM_RS30440 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RAM_RS30440 PF01409 tRNA synthetases class II core domain (F) RAM_RS30450 PF08032 RNA 2'-O ribose methyltransferase substrate binding RAM_RS30450 PF00588 SpoU rRNA Methylase family RAM_RS30455 PF00453 Ribosomal protein L20 RAM_RS30460 PF01632 Ribosomal protein L35 RAM_RS30465 PF00707 Translation initiation factor IF-3, C-terminal domain RAM_RS30465 PF05198 Translation initiation factor IF-3, N-terminal domain RAM_RS30475 PF07729 FCD domain RAM_RS30475 PF00392 Bacterial regulatory proteins, gntR family RAM_RS30480 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS30490 PF01614 Bacterial transcriptional regulator RAM_RS30490 PF09339 IclR helix-turn-helix domain RAM_RS30495 PF00294 pfkB family carbohydrate kinase RAM_RS30505 PF07969 Amidohydrolase family RAM_RS30510 PF02447 GntP family permease RAM_RS30515 PF10282 Lactonase, 7-bladed beta-propeller RAM_RS30525 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS30530 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS30535 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_RS30535 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_RS30545 PF00072 Response regulator receiver domain RAM_RS30550 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RAM_RS30550 PF17203 Single cache domain 3 RAM_RS30550 PF00989 PAS fold RAM_RS30550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS30555 PF00375 Sodium:dicarboxylate symporter family RAM_RS30565 PF07690 Major Facilitator Superfamily RAM_RS30580 PF04542 Sigma-70 region 2 RAM_RS30580 PF04545 Sigma-70, region 4 RAM_RS30595 PF00005 ABC transporter RAM_RS30595 PF17760 UvrA interaction domain RAM_RS30595 PF17755 UvrA DNA-binding domain RAM_RS30605 PF00753 Metallo-beta-lactamase superfamily RAM_RS30630 PF07885 Ion channel RAM_RS30630 PF00027 Cyclic nucleotide-binding domain RAM_RS30635 PF00075 RNase H RAM_RS30650 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS30650 PF00703 Glycosyl hydrolases family 2 RAM_RS30650 PF16990 Carbohydrate binding module (family 35) RAM_RS30650 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_RS30655 PF00135 Carboxylesterase family RAM_RS30665 PF00999 Sodium/hydrogen exchanger family RAM_RS30670 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS30680 PF05423 Mycobacterium membrane protein RAM_RS30690 PF00356 Bacterial regulatory proteins, lacI family RAM_RS30710 PF07676 WD40-like Beta Propeller Repeat RAM_RS30710 PF00326 Prolyl oligopeptidase family RAM_RS30715 PF03741 Integral membrane protein TerC family RAM_RS30720 PF00005 ABC transporter RAM_RS30740 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS30750 PF05576 PS-10 peptidase S37 RAM_RS30760 PF17757 UvrB interaction domain RAM_RS30760 PF00271 Helicase conserved C-terminal domain RAM_RS30760 PF04851 Type III restriction enzyme, res subunit RAM_RS30760 PF02151 UvrB/uvrC motif RAM_RS30760 PF12344 Ultra-violet resistance protein B RAM_RS30780 PF01121 Dephospho-CoA kinase RAM_RS30780 PF04229 GrpB protein RAM_RS30805 PF00575 S1 RNA binding domain RAM_RS30810 PF08241 Methyltransferase domain RAM_RS30835 PF00440 Bacterial regulatory proteins, tetR family RAM_RS30835 PF08361 MAATS-type transcriptional repressor, C-terminal region RAM_RS30840 PF12833 Helix-turn-helix domain RAM_RS30840 PF02311 AraC-like ligand binding domain RAM_RS30845 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS30845 PF00107 Zinc-binding dehydrogenase RAM_RS30860 PF00476 DNA polymerase family A RAM_RS30860 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RAM_RS30860 PF01367 5'-3' exonuclease, C-terminal SAM fold RAM_RS30865 PF03061 Thioesterase superfamily RAM_RS30870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS30870 PF03466 LysR substrate binding domain RAM_RS30885 PF02653 Branched-chain amino acid transport system / permease component RAM_RS30890 PF11862 Domain of unknown function (DUF3382) RAM_RS30890 PF02653 Branched-chain amino acid transport system / permease component RAM_RS30895 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_RS30895 PF00005 ABC transporter RAM_RS30900 PF00005 ABC transporter RAM_RS30910 PF00072 Response regulator receiver domain RAM_RS30910 PF03861 ANTAR domain RAM_RS30930 PF12307 Protein of unknown function (DUF3631) RAM_RS30975 PF00436 Single-strand binding protein family RAM_RS31020 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_RS31025 PF00293 NUDIX domain RAM_RS31025 PF13344 Haloacid dehalogenase-like hydrolase RAM_RS31090 PF04542 Sigma-70 region 2 RAM_RS31090 PF12680 SnoaL-like domain RAM_RS31090 PF08281 Sigma-70, region 4 RAM_RS31140 PF07730 Histidine kinase RAM_RS31140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS31145 PF00196 Bacterial regulatory proteins, luxR family RAM_RS31145 PF00072 Response regulator receiver domain RAM_RS31165 PF00196 Bacterial regulatory proteins, luxR family RAM_RS31165 PF00072 Response regulator receiver domain RAM_RS31170 PF07730 Histidine kinase RAM_RS31190 PF01370 NAD dependent epimerase/dehydratase family RAM_RS31195 PF00005 ABC transporter RAM_RS31210 PF04542 Sigma-70 region 2 RAM_RS31210 PF08281 Sigma-70, region 4 RAM_RS31215 PF00465 Iron-containing alcohol dehydrogenase RAM_RS31220 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_RS31220 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_RS31225 PF00171 Aldehyde dehydrogenase family RAM_RS31230 PF13378 Enolase C-terminal domain-like RAM_RS31230 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS31245 PF06441 Epoxide hydrolase N terminus RAM_RS31265 PF12833 Helix-turn-helix domain RAM_RS31265 PF01965 DJ-1/PfpI family RAM_RS31270 PF06441 Epoxide hydrolase N terminus RAM_RS31280 PF00106 short chain dehydrogenase RAM_RS31300 PF04545 Sigma-70, region 4 RAM_RS31300 PF04539 Sigma-70 region 3 RAM_RS31300 PF04542 Sigma-70 region 2 RAM_RS31320 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS31325 PF00550 Phosphopantetheine attachment site RAM_RS31325 PF13193 AMP-binding enzyme C-terminal domain RAM_RS31325 PF00668 Condensation domain RAM_RS31325 PF00501 AMP-binding enzyme RAM_RS31330 PF00975 Thioesterase domain RAM_RS31335 PF00668 Condensation domain RAM_RS31335 PF13193 AMP-binding enzyme C-terminal domain RAM_RS31335 PF00501 AMP-binding enzyme RAM_RS31335 PF00668 Condensation domain RAM_RS31335 PF00501 AMP-binding enzyme RAM_RS31335 PF00550 Phosphopantetheine attachment site RAM_RS31335 PF13193 AMP-binding enzyme C-terminal domain RAM_RS31335 PF00550 Phosphopantetheine attachment site RAM_RS31340 PF00550 Phosphopantetheine attachment site RAM_RS31340 PF00975 Thioesterase domain RAM_RS31340 PF13193 AMP-binding enzyme C-terminal domain RAM_RS31340 PF00668 Condensation domain RAM_RS31340 PF08241 Methyltransferase domain RAM_RS31340 PF00501 AMP-binding enzyme RAM_RS31340 PF00391 PEP-utilising enzyme, mobile domain RAM_RS31345 PF13193 AMP-binding enzyme C-terminal domain RAM_RS31345 PF00501 AMP-binding enzyme RAM_RS31345 PF00550 Phosphopantetheine attachment site RAM_RS31345 PF00668 Condensation domain RAM_RS31355 PF07993 Male sterility protein RAM_RS31355 PF00668 Condensation domain RAM_RS31355 PF13193 AMP-binding enzyme C-terminal domain RAM_RS31355 PF00501 AMP-binding enzyme RAM_RS31355 PF00550 Phosphopantetheine attachment site RAM_RS31365 PF03621 MbtH-like protein RAM_RS31370 PF00501 AMP-binding enzyme RAM_RS31370 PF13193 AMP-binding enzyme C-terminal domain RAM_RS31370 PF00668 Condensation domain RAM_RS31370 PF00550 Phosphopantetheine attachment site RAM_RS31370 PF00975 Thioesterase domain RAM_RS31375 PF00067 Cytochrome P450 RAM_RS31390 PF00501 AMP-binding enzyme RAM_RS31390 PF13193 AMP-binding enzyme C-terminal domain RAM_RS31390 PF07993 Male sterility protein RAM_RS31390 PF00550 Phosphopantetheine attachment site RAM_RS31390 PF00668 Condensation domain RAM_RS31395 PF07993 Male sterility protein RAM_RS31395 PF00501 AMP-binding enzyme RAM_RS31395 PF00550 Phosphopantetheine attachment site RAM_RS31395 PF13193 AMP-binding enzyme C-terminal domain RAM_RS31395 PF00668 Condensation domain RAM_RS31400 PF00550 Phosphopantetheine attachment site RAM_RS31400 PF13193 AMP-binding enzyme C-terminal domain RAM_RS31400 PF00501 AMP-binding enzyme RAM_RS31400 PF00668 Condensation domain RAM_RS31405 PF00072 Response regulator receiver domain RAM_RS31405 PF00196 Bacterial regulatory proteins, luxR family RAM_RS31410 PF03466 LysR substrate binding domain RAM_RS31410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS31420 PF07690 Major Facilitator Superfamily RAM_RS31425 PF13460 NAD(P)H-binding RAM_RS31430 PF03799 Cell division protein FtsQ RAM_RS31430 PF08478 POTRA domain, FtsQ-type RAM_RS31435 PF02875 Mur ligase family, glutamate ligase domain RAM_RS31435 PF08245 Mur ligase middle domain RAM_RS31435 PF01225 Mur ligase family, catalytic domain RAM_RS31440 PF04101 Glycosyltransferase family 28 C-terminal domain RAM_RS31440 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_RS31445 PF01098 Cell cycle protein RAM_RS31450 PF08245 Mur ligase middle domain RAM_RS31455 PF00953 Glycosyl transferase family 4 RAM_RS31455 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RAM_RS31460 PF08245 Mur ligase middle domain RAM_RS31460 PF02875 Mur ligase family, glutamate ligase domain RAM_RS31460 PF01225 Mur ligase family, catalytic domain RAM_RS31465 PF08245 Mur ligase middle domain RAM_RS31465 PF02875 Mur ligase family, glutamate ligase domain RAM_RS31465 PF01225 Mur ligase family, catalytic domain RAM_RS31470 PF00905 Penicillin binding protein transpeptidase domain RAM_RS31470 PF03717 Penicillin-binding Protein dimerisation domain RAM_RS31480 PF01795 MraW methylase family RAM_RS31485 PF02381 MraZ protein, putative antitoxin-like RAM_RS31515 PF07726 ATPase family associated with various cellular activities (AAA) RAM_RS31515 PF17863 AAA lid domain RAM_RS31525 PF01841 Transglutaminase-like superfamily RAM_RS31525 PF11992 Domain of unknown function (DUF3488) RAM_RS31525 PF13559 Domain of unknown function (DUF4129) RAM_RS31535 PF00817 impB/mucB/samB family RAM_RS31535 PF11799 impB/mucB/samB family C-terminal domain RAM_RS31545 PF13614 AAA domain RAM_RS31550 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_RS31550 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_RS31555 PF00962 Adenosine/AMP deaminase RAM_RS31565 PF01180 Dihydroorotate dehydrogenase RAM_RS31570 PF01425 Amidase RAM_RS31580 PF04012 PspA/IM30 family RAM_RS31590 PF00994 Probable molybdopterin binding domain RAM_RS31590 PF18146 Damage-inducible protein CinA KH domain RAM_RS31590 PF02464 Competence-damaged protein RAM_RS31595 PF01066 CDP-alcohol phosphatidyltransferase RAM_RS31600 PF18693 TRAM domain RAM_RS31600 PF00919 Uncharacterized protein family UPF0004 RAM_RS31600 PF04055 Radical SAM superfamily RAM_RS31605 PF00583 Acetyltransferase (GNAT) family RAM_RS31635 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RAM_RS31635 PF09397 Ftsk gamma domain RAM_RS31635 PF17854 FtsK alpha domain RAM_RS31635 PF01580 FtsK/SpoIIIE family RAM_RS31645 PF03358 NADPH-dependent FMN reductase RAM_RS31665 PF00324 Amino acid permease RAM_RS31675 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RAM_RS31675 PF12706 Beta-lactamase superfamily domain RAM_RS31675 PF17770 Ribonuclease J C-terminal domain RAM_RS31680 PF00701 Dihydrodipicolinate synthetase family RAM_RS31685 PF00069 Protein kinase domain RAM_RS31695 PF03358 NADPH-dependent FMN reductase RAM_RS31695 PF01566 Natural resistance-associated macrophage protein RAM_RS31705 PF02511 Thymidylate synthase complementing protein RAM_RS31720 PF06224 Winged helix DNA-binding domain RAM_RS31745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS31745 PF03466 LysR substrate binding domain RAM_RS31750 PF09084 NMT1/THI5 like RAM_RS31760 PF05173 Dihydrodipicolinate reductase, C-terminus RAM_RS31760 PF01113 Dihydrodipicolinate reductase, N-terminus RAM_RS31765 PF05193 Peptidase M16 inactive domain RAM_RS31765 PF00675 Insulinase (Peptidase family M16) RAM_RS31770 PF00013 KH domain RAM_RS31770 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RAM_RS31770 PF01138 3' exoribonuclease family, domain 1 RAM_RS31770 PF00575 S1 RNA binding domain RAM_RS31775 PF00312 Ribosomal protein S15 RAM_RS31790 PF06574 FAD synthetase RAM_RS31790 PF01687 Riboflavin kinase RAM_RS31795 PF16198 tRNA pseudouridylate synthase B C-terminal domain RAM_RS31795 PF01509 TruB family pseudouridylate synthase (N terminal domain) RAM_RS31795 PF09142 tRNA Pseudouridine synthase II, C terminal RAM_RS31810 PF07690 Major Facilitator Superfamily RAM_RS31820 PF02272 DHHA1 domain RAM_RS31820 PF01368 DHH family RAM_RS31825 PF08241 Methyltransferase domain RAM_RS31830 PF01145 SPFH domain / Band 7 family RAM_RS31830 PF15975 Flotillin RAM_RS31845 PF08241 Methyltransferase domain RAM_RS31860 PF02033 Ribosome-binding factor A RAM_RS31870 PF00009 Elongation factor Tu GTP binding domain RAM_RS31870 PF11987 Translation-initiation factor 2 RAM_RS31870 PF04760 Translation initiation factor IF-2, N-terminal region RAM_RS31880 PF08529 NusA N-terminal domain RAM_RS31880 PF13184 NusA-like KH domain RAM_RS31885 PF17384 RimP C-terminal SH3 domain RAM_RS31885 PF02576 RimP N-terminal domain RAM_RS31915 PF13977 BetI-type transcriptional repressor, C-terminal RAM_RS31915 PF00440 Bacterial regulatory proteins, tetR family RAM_RS31925 PF07730 Histidine kinase RAM_RS31930 PF00196 Bacterial regulatory proteins, luxR family RAM_RS31930 PF00072 Response regulator receiver domain RAM_RS31940 PF01638 HxlR-like helix-turn-helix RAM_RS31950 PF00440 Bacterial regulatory proteins, tetR family RAM_RS31955 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_RS31955 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS31970 PF00072 Response regulator receiver domain RAM_RS31970 PF00486 Transcriptional regulatory protein, C terminal RAM_RS31975 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS31975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS31985 PF00931 NB-ARC domain RAM_RS31985 PF03704 Bacterial transcriptional activator domain RAM_RS31985 PF00486 Transcriptional regulatory protein, C terminal RAM_RS32005 PF03466 LysR substrate binding domain RAM_RS32005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS32010 PF02515 CoA-transferase family III RAM_RS32015 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS32020 PF06314 Acetoacetate decarboxylase (ADC) RAM_RS32025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS32025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS32030 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS32030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS32030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS32035 PF13399 LytR cell envelope-related transcriptional attenuator RAM_RS32035 PF03816 Cell envelope-related transcriptional attenuator domain RAM_RS32040 PF00106 short chain dehydrogenase RAM_RS32045 PF12680 SnoaL-like domain RAM_RS32045 PF08281 Sigma-70, region 4 RAM_RS32045 PF04542 Sigma-70 region 2 RAM_RS32050 PF02467 Transcription factor WhiB RAM_RS32060 PF04542 Sigma-70 region 2 RAM_RS32060 PF08281 Sigma-70, region 4 RAM_RS32065 PF03466 LysR substrate binding domain RAM_RS32065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS32070 PF13593 SBF-like CPA transporter family (DUF4137) RAM_RS32085 PF07732 Multicopper oxidase RAM_RS32085 PF07731 Multicopper oxidase RAM_RS32090 PF00067 Cytochrome P450 RAM_RS32105 PF13460 NAD(P)H-binding RAM_RS32130 PF03704 Bacterial transcriptional activator domain RAM_RS32130 PF00486 Transcriptional regulatory protein, C terminal RAM_RS32130 PF00931 NB-ARC domain RAM_RS32135 PF04650 YSIRK type signal peptide RAM_RS32135 PF17210 SdrD B-like domain RAM_RS32135 PF17961 Bacterial Ig domain RAM_RS32135 PF00746 LPXTG cell wall anchor motif RAM_RS32160 PF00266 Aminotransferase class-V RAM_RS32170 PF00561 alpha/beta hydrolase fold RAM_RS32180 PF00487 Fatty acid desaturase RAM_RS32220 PF12680 SnoaL-like domain RAM_RS32220 PF08281 Sigma-70, region 4 RAM_RS32220 PF04542 Sigma-70 region 2 RAM_RS32230 PF00440 Bacterial regulatory proteins, tetR family RAM_RS32230 PF16925 Tetracyclin repressor-like, C-terminal domain RAM_RS32245 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain RAM_RS32245 PF04616 Glycosyl hydrolases family 43 RAM_RS32260 PF08281 Sigma-70, region 4 RAM_RS32260 PF04542 Sigma-70 region 2 RAM_RS32265 PF03795 YCII-related domain RAM_RS32270 PF00561 alpha/beta hydrolase fold RAM_RS32275 PF00440 Bacterial regulatory proteins, tetR family RAM_RS32280 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS32280 PF00107 Zinc-binding dehydrogenase RAM_RS32305 PF00012 Hsp70 protein RAM_RS32320 PF01979 Amidohydrolase family RAM_RS32330 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS32330 PF00331 Glycosyl hydrolase family 10 RAM_RS32335 PF00331 Glycosyl hydrolase family 10 RAM_RS32335 PF00553 Cellulose binding domain RAM_RS32360 PF01979 Amidohydrolase family RAM_RS32365 PF00067 Cytochrome P450 RAM_RS32390 PF00072 Response regulator receiver domain RAM_RS32390 PF00196 Bacterial regulatory proteins, luxR family RAM_RS32405 PF03704 Bacterial transcriptional activator domain RAM_RS32420 PF01757 Acyltransferase family RAM_RS32470 PF03704 Bacterial transcriptional activator domain RAM_RS32470 PF00931 NB-ARC domain RAM_RS32470 PF00486 Transcriptional regulatory protein, C terminal RAM_RS32495 PF00248 Aldo/keto reductase family RAM_RS32505 PF13191 AAA ATPase domain RAM_RS32505 PF00069 Protein kinase domain RAM_RS32510 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS32510 PF01799 [2Fe-2S] binding domain RAM_RS32520 PF17874 MalT-like TPR region RAM_RS32520 PF00196 Bacterial regulatory proteins, luxR family RAM_RS32525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS32525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS32525 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS32530 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RAM_RS32535 PF00561 alpha/beta hydrolase fold RAM_RS32540 PF00501 AMP-binding enzyme RAM_RS32540 PF13193 AMP-binding enzyme C-terminal domain RAM_RS32545 PF00561 alpha/beta hydrolase fold RAM_RS32555 PF12697 Alpha/beta hydrolase family RAM_RS32560 PF00196 Bacterial regulatory proteins, luxR family RAM_RS32560 PF00072 Response regulator receiver domain RAM_RS32565 PF00196 Bacterial regulatory proteins, luxR family RAM_RS32570 PF07690 Major Facilitator Superfamily RAM_RS32585 PF00083 Sugar (and other) transporter RAM_RS32585 PF07690 Major Facilitator Superfamily RAM_RS32625 PF00005 ABC transporter RAM_RS32635 PF07730 Histidine kinase RAM_RS32635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS32640 PF00196 Bacterial regulatory proteins, luxR family RAM_RS32640 PF00072 Response regulator receiver domain RAM_RS32655 PF09335 SNARE associated Golgi protein RAM_RS32665 PF02673 Bacitracin resistance protein BacA RAM_RS32695 PF00005 ABC transporter RAM_RS32705 PF07730 Histidine kinase RAM_RS32710 PF00072 Response regulator receiver domain RAM_RS32710 PF00196 Bacterial regulatory proteins, luxR family RAM_RS32720 PF01339 CheB methylesterase RAM_RS32720 PF00072 Response regulator receiver domain RAM_RS32735 PF08359 YsiA-like protein, C-terminal region RAM_RS32735 PF00440 Bacterial regulatory proteins, tetR family RAM_RS32740 PF01370 NAD dependent epimerase/dehydratase family RAM_RS32745 PF05368 NmrA-like family RAM_RS32760 PF07859 alpha/beta hydrolase fold RAM_RS32765 PF07859 alpha/beta hydrolase fold RAM_RS32770 PF07690 Major Facilitator Superfamily RAM_RS32775 PF00106 short chain dehydrogenase RAM_RS32795 PF12833 Helix-turn-helix domain RAM_RS32795 PF01965 DJ-1/PfpI family RAM_RS32820 PF00403 Heavy-metal-associated domain RAM_RS32830 PF04542 Sigma-70 region 2 RAM_RS32830 PF08281 Sigma-70, region 4 RAM_RS32835 PF08281 Sigma-70, region 4 RAM_RS32835 PF04542 Sigma-70 region 2 RAM_RS32845 PF01965 DJ-1/PfpI family RAM_RS32850 PF00005 ABC transporter RAM_RS32855 PF01032 FecCD transport family RAM_RS32870 PF00403 Heavy-metal-associated domain RAM_RS32970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS32970 PF01568 Molydopterin dinucleotide binding domain RAM_RS32970 PF00384 Molybdopterin oxidoreductase RAM_RS32980 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS32980 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAM_RS32995 PF00698 Acyl transferase domain RAM_RS32995 PF14765 Polyketide synthase dehydratase RAM_RS32995 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS32995 PF08990 Erythronolide synthase docking RAM_RS32995 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS32995 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS32995 PF08659 KR domain RAM_RS32995 PF00550 Phosphopantetheine attachment site RAM_RS32995 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS32995 PF09277 Erythronolide synthase, docking RAM_RS33010 PF00171 Aldehyde dehydrogenase family RAM_RS33020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS33020 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS33020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS33025 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS33025 PF13378 Enolase C-terminal domain-like RAM_RS33030 PF13183 4Fe-4S dicluster domain RAM_RS33030 PF01565 FAD binding domain RAM_RS33030 PF02913 FAD linked oxidases, C-terminal domain RAM_RS33050 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_RS33050 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_RS33055 PF00871 Acetokinase family RAM_RS33060 PF09364 XFP N-terminal domain RAM_RS33060 PF09363 XFP C-terminal domain RAM_RS33060 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase RAM_RS33070 PF04454 Encapsulating protein for peroxidase RAM_RS33075 PF00107 Zinc-binding dehydrogenase RAM_RS33075 PF13823 Alcohol dehydrogenase GroES-associated RAM_RS33075 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS33090 PF03600 Citrate transporter RAM_RS33095 PF00005 ABC transporter RAM_RS33120 PF01807 CHC2 zinc finger RAM_RS33120 PF08275 DNA primase catalytic core, N-terminal domain RAM_RS33120 PF13662 Toprim domain RAM_RS33120 PF08278 DNA primase DnaG DnaB-binding RAM_RS33120 PF10410 DnaB-helicase binding domain of primase RAM_RS33125 PF04542 Sigma-70 region 2 RAM_RS33125 PF12680 SnoaL-like domain RAM_RS33125 PF08281 Sigma-70, region 4 RAM_RS33140 PF07690 Major Facilitator Superfamily RAM_RS33160 PF04978 Protein of unknown function (DUF664) RAM_RS33175 PF01966 HD domain RAM_RS33175 PF13286 Phosphohydrolase-associated domain RAM_RS33185 PF00072 Response regulator receiver domain RAM_RS33185 PF00196 Bacterial regulatory proteins, luxR family RAM_RS33190 PF07730 Histidine kinase RAM_RS33200 PF00005 ABC transporter RAM_RS33205 PF03129 Anticodon binding domain RAM_RS33205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_RS33225 PF01022 Bacterial regulatory protein, arsR family RAM_RS33230 PF01475 Ferric uptake regulator family RAM_RS33245 PF03773 Predicted permease RAM_RS33255 PF01255 Putative undecaprenyl diphosphate synthase RAM_RS33260 PF11967 Recombination protein O N terminal RAM_RS33260 PF02565 Recombination protein O C terminal RAM_RS33270 PF06271 RDD family RAM_RS33290 PF01926 50S ribosome-binding GTPase RAM_RS33290 PF07650 KH domain RAM_RS33300 PF01595 Cyclin M transmembrane N-terminal domain RAM_RS33300 PF03471 Transporter associated domain RAM_RS33300 PF00571 CBS domain RAM_RS33305 PF02130 Uncharacterized protein family UPF0054 RAM_RS33310 PF02562 PhoH-like protein RAM_RS33315 PF01230 HIT domain RAM_RS33320 PF04452 RNA methyltransferase RAM_RS33325 PF00684 DnaJ central domain RAM_RS33325 PF01556 DnaJ C terminal domain RAM_RS33325 PF00226 DnaJ domain RAM_RS33330 PF01628 HrcA protein C terminal domain RAM_RS33355 PF00248 Aldo/keto reductase family RAM_RS33360 PF00171 Aldehyde dehydrogenase family RAM_RS33390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS33390 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS33390 PF00672 HAMP domain RAM_RS33395 PF00072 Response regulator receiver domain RAM_RS33395 PF00486 Transcriptional regulatory protein, C terminal RAM_RS33400 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RAM_RS33410 PF01979 Amidohydrolase family RAM_RS33420 PF00561 alpha/beta hydrolase fold RAM_RS33425 PF00144 Beta-lactamase RAM_RS33430 PF08021 Siderophore-interacting FAD-binding domain RAM_RS33430 PF04954 Siderophore-interacting protein RAM_RS33445 PF00440 Bacterial regulatory proteins, tetR family RAM_RS33445 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_RS33450 PF00107 Zinc-binding dehydrogenase RAM_RS33450 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS33455 PF04055 Radical SAM superfamily RAM_RS33465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RAM_RS33465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_RS33475 PF01507 Phosphoadenosine phosphosulfate reductase family RAM_RS33480 PF01507 Phosphoadenosine phosphosulfate reductase family RAM_RS33485 PF00009 Elongation factor Tu GTP binding domain RAM_RS33500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS33500 PF00183 Hsp90 protein RAM_RS33515 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS33520 PF01337 Barstar (barnase inhibitor) RAM_RS33525 PF00545 ribonuclease RAM_RS33535 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS33535 PF00107 Zinc-binding dehydrogenase RAM_RS33545 PF13520 Amino acid permease RAM_RS33550 PF03060 Nitronate monooxygenase RAM_RS33560 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_RS33560 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_RS33590 PF00679 Elongation factor G C-terminus RAM_RS33590 PF00009 Elongation factor Tu GTP binding domain RAM_RS33590 PF06421 GTP-binding protein LepA C-terminus RAM_RS33595 PF01209 ubiE/COQ5 methyltransferase family RAM_RS33610 PF01649 Ribosomal protein S20 RAM_RS33620 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS33630 PF00753 Metallo-beta-lactamase superfamily RAM_RS33630 PF13567 Domain of unknown function (DUF4131) RAM_RS33630 PF03772 Competence protein RAM_RS33640 PF02645 Uncharacterised protein, DegV family COG1307 RAM_RS33650 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS33660 PF01467 Cytidylyltransferase-like RAM_RS33665 PF00271 Helicase conserved C-terminal domain RAM_RS33665 PF00270 DEAD/DEAH box helicase RAM_RS33665 PF09382 RQC domain RAM_RS33665 PF16124 RecQ zinc-binding RAM_RS33665 PF00570 HRDC domain RAM_RS33675 PF03485 Arginyl tRNA synthetase N terminal domain RAM_RS33675 PF05746 DALR anticodon binding domain RAM_RS33675 PF00750 tRNA synthetases class I (R) RAM_RS33690 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_RS33690 PF00440 Bacterial regulatory proteins, tetR family RAM_RS33700 PF00696 Amino acid kinase family RAM_RS33700 PF01472 PUA domain RAM_RS33705 PF09269 Domain of unknown function (DUF1967) RAM_RS33705 PF01018 GTP1/OBG RAM_RS33705 PF01926 50S ribosome-binding GTPase RAM_RS33710 PF01016 Ribosomal L27 protein RAM_RS33715 PF00829 Ribosomal prokaryotic L21 protein RAM_RS33720 PF10150 Ribonuclease E/G family RAM_RS33720 PF10150 Ribonuclease E/G family RAM_RS33725 PF00082 Subtilase family RAM_RS33730 PF01061 ABC-2 type transporter RAM_RS33740 PF00005 ABC transporter RAM_RS33755 PF00334 Nucleoside diphosphate kinase RAM_RS33765 PF01804 Penicillin amidase RAM_RS33775 PF08245 Mur ligase middle domain RAM_RS33775 PF02875 Mur ligase family, glutamate ligase domain RAM_RS33780 PF08241 Methyltransferase domain RAM_RS33785 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_RS33795 PF12697 Alpha/beta hydrolase family RAM_RS33800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS33800 PF03466 LysR substrate binding domain RAM_RS33805 PF08264 Anticodon-binding domain of tRNA RAM_RS33805 PF00133 tRNA synthetases class I (I, L, M and V) RAM_RS33805 PF10458 Valyl tRNA synthetase tRNA binding arm RAM_RS33815 PF12802 MarR family RAM_RS33820 PF07690 Major Facilitator Superfamily RAM_RS33825 PF00384 Molybdopterin oxidoreductase RAM_RS33825 PF01568 Molydopterin dinucleotide binding domain RAM_RS33835 PF13399 LytR cell envelope-related transcriptional attenuator RAM_RS33835 PF03816 Cell envelope-related transcriptional attenuator domain RAM_RS33845 PF02634 FdhD/NarQ family RAM_RS33850 PF03055 Retinal pigment epithelial membrane protein RAM_RS33875 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_RS33875 PF06689 ClpX C4-type zinc finger RAM_RS33875 PF07724 AAA domain (Cdc48 subfamily) RAM_RS33880 PF00574 Clp protease RAM_RS33885 PF00574 Clp protease RAM_RS33890 PF05697 Bacterial trigger factor protein (TF) RAM_RS33890 PF05698 Bacterial trigger factor protein (TF) C-terminus RAM_RS33890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAM_RS33900 PF00175 Oxidoreductase NAD-binding domain RAM_RS33900 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS33900 PF00970 Oxidoreductase FAD-binding domain RAM_RS33910 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS33910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS33910 PF00672 HAMP domain RAM_RS33915 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RAM_RS33930 PF00586 AIR synthase related protein, N-terminal domain RAM_RS33930 PF02769 AIR synthase related protein, C-terminal domain RAM_RS33935 PF00692 dUTPase RAM_RS33970 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RAM_RS34015 PF00486 Transcriptional regulatory protein, C terminal RAM_RS34015 PF00931 NB-ARC domain RAM_RS34015 PF03704 Bacterial transcriptional activator domain RAM_RS34025 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_RS34025 PF07971 Glycosyl hydrolase family 92 RAM_RS34030 PF01979 Amidohydrolase family RAM_RS34030 PF13382 Adenine deaminase C-terminal domain RAM_RS34040 PF13732 Domain of unknown function (DUF4162) RAM_RS34040 PF00005 ABC transporter RAM_RS34045 PF17933 Tetracyclin repressor-like, C-terminal domain RAM_RS34045 PF00440 Bacterial regulatory proteins, tetR family RAM_RS34055 PF00480 ROK family RAM_RS34060 PF01261 Xylose isomerase-like TIM barrel RAM_RS34075 PF07690 Major Facilitator Superfamily RAM_RS34080 PF00248 Aldo/keto reductase family RAM_RS34110 PF01965 DJ-1/PfpI family RAM_RS34115 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain RAM_RS34115 PF07228 Stage II sporulation protein E (SpoIIE) RAM_RS34120 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS34120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS34120 PF09308 LuxQ, periplasmic RAM_RS34120 PF00072 Response regulator receiver domain RAM_RS34155 PF01381 Helix-turn-helix RAM_RS34175 PF03466 LysR substrate binding domain RAM_RS34175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS34195 PF00296 Luciferase-like monooxygenase RAM_RS34210 PF01638 HxlR-like helix-turn-helix RAM_RS34215 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_RS34215 PF16499 Alpha galactosidase A RAM_RS34220 PF12680 SnoaL-like domain RAM_RS34225 PF00296 Luciferase-like monooxygenase RAM_RS34240 PF00118 TCP-1/cpn60 chaperonin family RAM_RS34245 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_RS34245 PF06827 Zinc finger found in FPG and IleRS RAM_RS34245 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_RS34250 PF02502 Ribose/Galactose Isomerase RAM_RS34265 PF01323 DSBA-like thioredoxin domain RAM_RS34270 PF11838 ERAP1-like C-terminal domain RAM_RS34270 PF01433 Peptidase family M1 domain RAM_RS34280 PF17174 Domain of unknown function (DUF5130) RAM_RS34300 PF00924 Mechanosensitive ion channel RAM_RS34305 PF01152 Bacterial-like globin RAM_RS34310 PF00128 Alpha amylase, catalytic domain RAM_RS34330 PF05088 Bacterial NAD-glutamate dehydrogenase RAM_RS34340 PF00005 ABC transporter RAM_RS34340 PF12848 ABC transporter RAM_RS34345 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) RAM_RS34345 PF05425 Copper resistance protein D RAM_RS34360 PF07690 Major Facilitator Superfamily RAM_RS34375 PF00202 Aminotransferase class-III RAM_RS34380 PF05199 GMC oxidoreductase RAM_RS34380 PF00732 GMC oxidoreductase RAM_RS34400 PF00732 GMC oxidoreductase RAM_RS34400 PF05199 GMC oxidoreductase RAM_RS34415 PF00578 AhpC/TSA family RAM_RS34435 PF00171 Aldehyde dehydrogenase family RAM_RS34440 PF07690 Major Facilitator Superfamily RAM_RS34445 PF06441 Epoxide hydrolase N terminus RAM_RS34465 PF01494 FAD binding domain RAM_RS34485 PF01039 Carboxyl transferase domain RAM_RS34490 PF16363 GDP-mannose 4,6 dehydratase RAM_RS34495 PF01613 Flavin reductase like domain RAM_RS34505 PF08659 KR domain RAM_RS34505 PF00550 Phosphopantetheine attachment site RAM_RS34505 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS34505 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS34505 PF00698 Acyl transferase domain RAM_RS34505 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS34510 PF08608 Wyosine base formation RAM_RS34510 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_RS34520 PF05199 GMC oxidoreductase RAM_RS34530 PF00067 Cytochrome P450 RAM_RS34555 PF12833 Helix-turn-helix domain RAM_RS34565 PF01638 HxlR-like helix-turn-helix RAM_RS34570 PF04542 Sigma-70 region 2 RAM_RS34570 PF08281 Sigma-70, region 4 RAM_RS34575 PF03795 YCII-related domain RAM_RS34585 PF01300 Telomere recombination RAM_RS34600 PF00196 Bacterial regulatory proteins, luxR family RAM_RS34600 PF00072 Response regulator receiver domain RAM_RS34605 PF02311 AraC-like ligand binding domain RAM_RS34605 PF12833 Helix-turn-helix domain RAM_RS34610 PF00072 Response regulator receiver domain RAM_RS34610 PF00196 Bacterial regulatory proteins, luxR family RAM_RS34615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS34615 PF07730 Histidine kinase RAM_RS34630 PF01638 HxlR-like helix-turn-helix RAM_RS34660 PF02583 Metal-sensitive transcriptional repressor RAM_RS34665 PF00403 Heavy-metal-associated domain RAM_RS34675 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_RS34695 PF00561 alpha/beta hydrolase fold RAM_RS34700 PF00106 short chain dehydrogenase RAM_RS34715 PF04055 Radical SAM superfamily RAM_RS34740 PF07859 alpha/beta hydrolase fold RAM_RS34760 PF00486 Transcriptional regulatory protein, C terminal RAM_RS34760 PF00072 Response regulator receiver domain RAM_RS34765 PF00672 HAMP domain RAM_RS34765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS34765 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS34775 PF00356 Bacterial regulatory proteins, lacI family RAM_RS34780 PF13416 Bacterial extracellular solute-binding protein RAM_RS34785 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS34790 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS34795 PF00128 Alpha amylase, catalytic domain RAM_RS34800 PF03704 Bacterial transcriptional activator domain RAM_RS34800 PF00486 Transcriptional regulatory protein, C terminal RAM_RS34800 PF00931 NB-ARC domain RAM_RS34810 PF13537 Glutamine amidotransferase domain RAM_RS34810 PF00733 Asparagine synthase RAM_RS34815 PF00480 ROK family RAM_RS34835 PF03466 LysR substrate binding domain RAM_RS34835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS34860 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS34860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_RS34875 PF00356 Bacterial regulatory proteins, lacI family RAM_RS34895 PF00486 Transcriptional regulatory protein, C terminal RAM_RS34895 PF00072 Response regulator receiver domain RAM_RS34900 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS34900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS34910 PF13520 Amino acid permease RAM_RS34915 PF00795 Carbon-nitrogen hydrolase RAM_RS34920 PF01593 Flavin containing amine oxidoreductase RAM_RS34935 PF00561 alpha/beta hydrolase fold RAM_RS34945 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS34945 PF05651 Putative sugar diacid recognition RAM_RS34945 PF17853 GGDEF-like domain RAM_RS34965 PF02803 Thiolase, C-terminal domain RAM_RS34965 PF00108 Thiolase, N-terminal domain RAM_RS34970 PF13193 AMP-binding enzyme C-terminal domain RAM_RS34970 PF00501 AMP-binding enzyme RAM_RS34975 PF03055 Retinal pigment epithelial membrane protein RAM_RS34980 PF01638 HxlR-like helix-turn-helix RAM_RS34995 PF03466 LysR substrate binding domain RAM_RS34995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS35005 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RAM_RS35005 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_RS35015 PF03301 Tryptophan 2,3-dioxygenase RAM_RS35025 PF02633 Creatinine amidohydrolase RAM_RS35030 PF13193 AMP-binding enzyme C-terminal domain RAM_RS35030 PF00501 AMP-binding enzyme RAM_RS35040 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS35080 PF00106 short chain dehydrogenase RAM_RS35090 PF00196 Bacterial regulatory proteins, luxR family RAM_RS35100 PF13193 AMP-binding enzyme C-terminal domain RAM_RS35100 PF00501 AMP-binding enzyme RAM_RS35115 PF00270 DEAD/DEAH box helicase RAM_RS35115 PF00271 Helicase conserved C-terminal domain RAM_RS35115 PF04408 Helicase associated domain (HA2) RAM_RS35115 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RAM_RS35115 PF11898 Domain of unknown function (DUF3418) RAM_RS35125 PF01070 FMN-dependent dehydrogenase RAM_RS35130 PF03435 Saccharopine dehydrogenase NADP binding domain RAM_RS35135 PF00743 Flavin-binding monooxygenase-like RAM_RS35145 PF01374 Glycosyl hydrolase family 46 RAM_RS35150 PF02811 PHP domain RAM_RS35150 PF14716 Helix-hairpin-helix domain RAM_RS35150 PF14791 DNA polymerase beta thumb RAM_RS35160 PF00392 Bacterial regulatory proteins, gntR family RAM_RS35160 PF07729 FCD domain RAM_RS35165 PF00920 Dehydratase family RAM_RS35185 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS35195 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS35200 PF01738 Dienelactone hydrolase family RAM_RS35215 PF08281 Sigma-70, region 4 RAM_RS35215 PF04542 Sigma-70 region 2 RAM_RS35235 PF01176 Translation initiation factor 1A / IF-1 RAM_RS35250 PF00155 Aminotransferase class I and II RAM_RS35250 PF00392 Bacterial regulatory proteins, gntR family RAM_RS35260 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_RS35260 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_RS35260 PF06827 Zinc finger found in FPG and IleRS RAM_RS35265 PF02585 GlcNAc-PI de-N-acetylase RAM_RS35270 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_RS35270 PF01008 Initiation factor 2 subunit family RAM_RS35285 PF00067 Cytochrome P450 RAM_RS35290 PF03551 Transcriptional regulator PadR-like family RAM_RS35290 PF10400 Virulence activator alpha C-term RAM_RS35295 PF00067 Cytochrome P450 RAM_RS35300 PF00456 Transketolase, thiamine diphosphate binding domain RAM_RS35305 PF17932 Tetracyclin repressor-like, C-terminal domain RAM_RS35305 PF00440 Bacterial regulatory proteins, tetR family RAM_RS35310 PF01565 FAD binding domain RAM_RS35310 PF13183 4Fe-4S dicluster domain RAM_RS35310 PF02913 FAD linked oxidases, C-terminal domain RAM_RS35320 PF00196 Bacterial regulatory proteins, luxR family RAM_RS35320 PF00072 Response regulator receiver domain RAM_RS35330 PF00005 ABC transporter RAM_RS35335 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_RS35335 PF00005 ABC transporter RAM_RS35340 PF02653 Branched-chain amino acid transport system / permease component RAM_RS35345 PF02653 Branched-chain amino acid transport system / permease component RAM_RS35360 PF13302 Acetyltransferase (GNAT) domain RAM_RS35365 PF07971 Glycosyl hydrolase family 92 RAM_RS35365 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_RS35370 PF01205 Uncharacterized protein family UPF0029 RAM_RS35370 PF09186 Domain of unknown function (DUF1949) RAM_RS35375 PF01493 GXGXG motif RAM_RS35375 PF01645 Conserved region in glutamate synthase RAM_RS35375 PF04898 Glutamate synthase central domain RAM_RS35375 PF00310 Glutamine amidotransferases class-II RAM_RS35380 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS35380 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RAM_RS35385 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RAM_RS35390 PF00440 Bacterial regulatory proteins, tetR family RAM_RS35400 PF00480 ROK family RAM_RS35415 PF07685 CobB/CobQ-like glutamine amidotransferase domain RAM_RS35415 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_RS35420 PF03186 CobD/Cbib protein RAM_RS35425 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RAM_RS35430 PF02277 Phosphoribosyltransferase RAM_RS35435 PF02654 Cobalamin-5-phosphate synthase RAM_RS35440 PF13280 WYL domain RAM_RS35440 PF08279 HTH domain RAM_RS35450 PF00155 Aminotransferase class I and II RAM_RS35455 PF07685 CobB/CobQ-like glutamine amidotransferase domain RAM_RS35455 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_RS35465 PF17863 AAA lid domain RAM_RS35465 PF07728 AAA domain (dynein-related subfamily) RAM_RS35465 PF13519 von Willebrand factor type A domain RAM_RS35470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_RS35475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_RS35480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS35480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS35485 PF02571 Precorrin-6x reductase CbiJ/CobK RAM_RS35490 PF00881 Nitroreductase family RAM_RS35495 PF17689 Arabinosyltransferase concanavalin like domain RAM_RS35495 PF04602 Mycobacterial cell wall arabinan synthesis protein RAM_RS35495 PF14896 EmbC C-terminal domain RAM_RS35500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_RS35505 PF02570 Precorrin-8X methylmutase RAM_RS35520 PF00005 ABC transporter RAM_RS35530 PF01381 Helix-turn-helix RAM_RS35540 PF02514 CobN/Magnesium Chelatase RAM_RS35550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_RS35550 PF01872 RibD C-terminal domain RAM_RS35565 PF00171 Aldehyde dehydrogenase family RAM_RS35590 PF13180 PDZ domain RAM_RS35600 PF05872 Bacterial protein of unknown function (DUF853) RAM_RS35605 PF00929 Exonuclease RAM_RS35615 PF08946 Osmosensory transporter coiled coil RAM_RS35615 PF00083 Sugar (and other) transporter RAM_RS35620 PF17964 Bacterial Ig domain RAM_RS35620 PF03734 L,D-transpeptidase catalytic domain RAM_RS35645 PF01555 DNA methylase RAM_RS35650 PF01555 DNA methylase RAM_RS35720 PF01494 FAD binding domain RAM_RS35805 PF00293 NUDIX domain RAM_RS35835 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS35835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS35835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS35840 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS35840 PF00107 Zinc-binding dehydrogenase RAM_RS35845 PF02779 Transketolase, pyrimidine binding domain RAM_RS35845 PF02780 Transketolase, C-terminal domain RAM_RS35850 PF13193 AMP-binding enzyme C-terminal domain RAM_RS35850 PF00501 AMP-binding enzyme RAM_RS35860 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS35880 PF07690 Major Facilitator Superfamily RAM_RS35890 PF03328 HpcH/HpaI aldolase/citrate lyase family RAM_RS35895 PF00296 Luciferase-like monooxygenase RAM_RS35900 PF07729 FCD domain RAM_RS35900 PF00392 Bacterial regulatory proteins, gntR family RAM_RS35905 PF00171 Aldehyde dehydrogenase family RAM_RS35910 PF02515 CoA-transferase family III RAM_RS35930 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS35940 PF00067 Cytochrome P450 RAM_RS35950 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS35950 PF14759 Reductase C-terminal RAM_RS35955 PF00106 short chain dehydrogenase RAM_RS35960 PF02627 Carboxymuconolactone decarboxylase family RAM_RS35970 PF00440 Bacterial regulatory proteins, tetR family RAM_RS35980 PF00107 Zinc-binding dehydrogenase RAM_RS35980 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS36015 PF00005 ABC transporter RAM_RS36020 PF00005 ABC transporter RAM_RS36020 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_RS36035 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS36035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS36035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS36040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS36040 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS36040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS36045 PF00106 short chain dehydrogenase RAM_RS36050 PF00392 Bacterial regulatory proteins, gntR family RAM_RS36050 PF07729 FCD domain RAM_RS36065 PF08659 KR domain RAM_RS36065 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS36065 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS36065 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS36065 PF00698 Acyl transferase domain RAM_RS36065 PF00107 Zinc-binding dehydrogenase RAM_RS36065 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS36065 PF00550 Phosphopantetheine attachment site RAM_RS36065 PF14765 Polyketide synthase dehydratase RAM_RS36070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS36070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS36070 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS36075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS36075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS36075 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS36085 PF00067 Cytochrome P450 RAM_RS36090 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS36100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS36100 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS36100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS36115 PF02515 CoA-transferase family III RAM_RS36155 PF00890 FAD binding domain RAM_RS36160 PF01614 Bacterial transcriptional regulator RAM_RS36160 PF09339 IclR helix-turn-helix domain RAM_RS36165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_RS36170 PF00561 alpha/beta hydrolase fold RAM_RS36175 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS36180 PF01613 Flavin reductase like domain RAM_RS36190 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_RS36190 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RAM_RS36195 PF00108 Thiolase, N-terminal domain RAM_RS36195 PF02803 Thiolase, C-terminal domain RAM_RS36200 PF02515 CoA-transferase family III RAM_RS36205 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS36210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS36210 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS36210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS36215 PF00106 short chain dehydrogenase RAM_RS36225 PF13193 AMP-binding enzyme C-terminal domain RAM_RS36225 PF00501 AMP-binding enzyme RAM_RS36235 PF13193 AMP-binding enzyme C-terminal domain RAM_RS36235 PF00501 AMP-binding enzyme RAM_RS36245 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS36250 PF00108 Thiolase, N-terminal domain RAM_RS36250 PF02803 Thiolase, C-terminal domain RAM_RS36255 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS36270 PF02515 CoA-transferase family III RAM_RS36275 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS36285 PF00809 Pterin binding enzyme RAM_RS36295 PF00171 Aldehyde dehydrogenase family RAM_RS36305 PF00067 Cytochrome P450 RAM_RS36315 PF14759 Reductase C-terminal RAM_RS36315 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS36320 PF00106 short chain dehydrogenase RAM_RS36325 PF00743 Flavin-binding monooxygenase-like RAM_RS36330 PF00743 Flavin-binding monooxygenase-like RAM_RS36350 PF00857 Isochorismatase family RAM_RS36370 PF00440 Bacterial regulatory proteins, tetR family RAM_RS36370 PF08361 MAATS-type transcriptional repressor, C-terminal region RAM_RS36380 PF02780 Transketolase, C-terminal domain RAM_RS36380 PF02779 Transketolase, pyrimidine binding domain RAM_RS36390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS36390 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS36390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS36395 PF00067 Cytochrome P450 RAM_RS36400 PF14759 Reductase C-terminal RAM_RS36400 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS36410 PF00107 Zinc-binding dehydrogenase RAM_RS36410 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS36420 PF07730 Histidine kinase RAM_RS36425 PF00072 Response regulator receiver domain RAM_RS36425 PF00196 Bacterial regulatory proteins, luxR family RAM_RS36430 PF00501 AMP-binding enzyme RAM_RS36435 PF00501 AMP-binding enzyme RAM_RS36445 PF13378 Enolase C-terminal domain-like RAM_RS36445 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS36450 PF07690 Major Facilitator Superfamily RAM_RS36480 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_RS36485 PF07690 Major Facilitator Superfamily RAM_RS36485 PF00083 Sugar (and other) transporter RAM_RS36515 PF03928 Haem-degrading RAM_RS36520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS36520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS36530 PF00356 Bacterial regulatory proteins, lacI family RAM_RS36535 PF01547 Bacterial extracellular solute-binding protein RAM_RS36540 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS36545 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS36555 PF00561 alpha/beta hydrolase fold RAM_RS36560 PF07729 FCD domain RAM_RS36560 PF00392 Bacterial regulatory proteins, gntR family RAM_RS36565 PF00561 alpha/beta hydrolase fold RAM_RS36580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_RS36580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_RS36585 PF07691 PA14 domain RAM_RS36585 PF14310 Fibronectin type III-like domain RAM_RS36585 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS36585 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS36590 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_RS36590 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_RS36590 PF01842 ACT domain RAM_RS36595 PF08546 Ketopantoate reductase PanE/ApbA C terminal RAM_RS36595 PF02558 Ketopantoate reductase PanE/ApbA RAM_RS36600 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS36600 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS36600 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS36605 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RAM_RS36605 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RAM_RS36620 PF02515 CoA-transferase family III RAM_RS36625 PF02798 Glutathione S-transferase, N-terminal domain RAM_RS36625 PF00043 Glutathione S-transferase, C-terminal domain RAM_RS36635 PF07690 Major Facilitator Superfamily RAM_RS36640 PF05681 Fumarate hydratase (Fumerase) RAM_RS36650 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS36650 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS36705 PF02195 ParB-like nuclease domain RAM_RS36705 PF17762 HTH domain found in ParB protein RAM_RS36725 PF11774 Lsr2 RAM_RS36825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_RS36835 PF00809 Pterin binding enzyme RAM_RS36880 PF06114 IrrE N-terminal-like domain RAM_RS36915 PF01370 NAD dependent epimerase/dehydratase family RAM_RS36930 PF13460 NAD(P)H-binding RAM_RS36940 PF04055 Radical SAM superfamily RAM_RS36945 PF04055 Radical SAM superfamily RAM_RS36950 PF00296 Luciferase-like monooxygenase RAM_RS36960 PF02805 Metal binding domain of Ada RAM_RS36960 PF12833 Helix-turn-helix domain RAM_RS36960 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAM_RS36960 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_RS36965 PF00067 Cytochrome P450 RAM_RS36970 PF08281 Sigma-70, region 4 RAM_RS36970 PF12680 SnoaL-like domain RAM_RS36970 PF04542 Sigma-70 region 2 RAM_RS36975 PF01565 FAD binding domain RAM_RS36975 PF08031 Berberine and berberine like RAM_RS36980 PF00296 Luciferase-like monooxygenase RAM_RS36990 PF07690 Major Facilitator Superfamily RAM_RS37030 PF00553 Cellulose binding domain RAM_RS37030 PF02011 Glycosyl hydrolase family 48 RAM_RS37030 PF00041 Fibronectin type III domain RAM_RS37040 PF00144 Beta-lactamase RAM_RS37050 PF12833 Helix-turn-helix domain RAM_RS37050 PF12852 Cupin RAM_RS37060 PF00156 Phosphoribosyl transferase domain RAM_RS37085 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS37090 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS37095 PF00005 ABC transporter RAM_RS37100 PF12849 PBP superfamily domain RAM_RS37115 PF00440 Bacterial regulatory proteins, tetR family RAM_RS37120 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS37120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS37145 PF01425 Amidase RAM_RS37160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS37160 PF03466 LysR substrate binding domain RAM_RS37175 PF14310 Fibronectin type III-like domain RAM_RS37175 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS37175 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS37180 PF01370 NAD dependent epimerase/dehydratase family RAM_RS37180 PF08338 Domain of unknown function (DUF1731) RAM_RS37190 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_RS37200 PF00005 ABC transporter RAM_RS37205 PF00759 Glycosyl hydrolase family 9 RAM_RS37205 PF02018 Carbohydrate binding domain RAM_RS37205 PF02927 Cellulase N-terminal ig-like domain RAM_RS37210 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_RS37210 PF16499 Alpha galactosidase A RAM_RS37255 PF00534 Glycosyl transferases group 1 RAM_RS37275 PF00534 Glycosyl transferases group 1 RAM_RS37275 PF13439 Glycosyltransferase Family 4 RAM_RS37280 PF13439 Glycosyltransferase Family 4 RAM_RS37280 PF00534 Glycosyl transferases group 1 RAM_RS37290 PF02397 Bacterial sugar transferase RAM_RS37295 PF00535 Glycosyl transferase family 2 RAM_RS37300 PF01593 Flavin containing amine oxidoreductase RAM_RS37305 PF02350 UDP-N-acetylglucosamine 2-epimerase RAM_RS37325 PF13229 Right handed beta helix region RAM_RS37330 PF00703 Glycosyl hydrolases family 2 RAM_RS37330 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 RAM_RS37330 PF16355 Domain of unknown function (DUF4982) RAM_RS37330 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS37330 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_RS37335 PF18370 Rhamnogalacturonan I lyases beta-sheet domain RAM_RS37345 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_RS37345 PF02013 Cellulose or protein binding domain RAM_RS37350 PF07745 Glycosyl hydrolase family 53 RAM_RS37355 PF00356 Bacterial regulatory proteins, lacI family RAM_RS37365 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS37370 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS37395 PF01740 STAS domain RAM_RS37410 PF12697 Alpha/beta hydrolase family RAM_RS37415 PF07228 Stage II sporulation protein E (SpoIIE) RAM_RS37415 PF00672 HAMP domain RAM_RS37425 PF00701 Dihydrodipicolinate synthetase family RAM_RS37430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS37430 PF03466 LysR substrate binding domain RAM_RS37435 PF01209 ubiE/COQ5 methyltransferase family RAM_RS37445 PF01380 SIS domain RAM_RS37455 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS37455 PF14759 Reductase C-terminal RAM_RS37470 PF00067 Cytochrome P450 RAM_RS37485 PF00248 Aldo/keto reductase family RAM_RS37490 PF00296 Luciferase-like monooxygenase RAM_RS37505 PF00759 Glycosyl hydrolase family 9 RAM_RS37505 PF00041 Fibronectin type III domain RAM_RS37505 PF00942 Cellulose binding domain RAM_RS37505 PF00553 Cellulose binding domain RAM_RS37510 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RAM_RS37510 PF14579 Helix-hairpin-helix motif RAM_RS37510 PF07733 Bacterial DNA polymerase III alpha NTPase domain RAM_RS37510 PF02811 PHP domain RAM_RS37510 PF01336 OB-fold nucleic acid binding domain RAM_RS37515 PF04542 Sigma-70 region 2 RAM_RS37515 PF08281 Sigma-70, region 4 RAM_RS37520 PF03795 YCII-related domain RAM_RS37530 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RAM_RS37530 PF01276 Orn/Lys/Arg decarboxylase, major domain RAM_RS37530 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RAM_RS37545 PF04072 Leucine carboxyl methyltransferase RAM_RS37550 PF00561 alpha/beta hydrolase fold RAM_RS37555 PF00392 Bacterial regulatory proteins, gntR family RAM_RS37560 PF00005 ABC transporter RAM_RS37575 PF12695 Alpha/beta hydrolase family RAM_RS37580 PF10503 Esterase PHB depolymerase RAM_RS37585 PF00657 GDSL-like Lipase/Acylhydrolase RAM_RS37585 PF00404 Dockerin type I domain RAM_RS37595 PF00210 Ferritin-like domain RAM_RS37605 PF03707 Bacterial signalling protein N terminal repeat RAM_RS37605 PF00563 EAL domain RAM_RS37605 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS37620 PF03259 Roadblock/LC7 domain RAM_RS37640 PF16363 GDP-mannose 4,6 dehydratase RAM_RS37645 PF02566 OsmC-like protein RAM_RS37655 PF00561 alpha/beta hydrolase fold RAM_RS37660 PF00196 Bacterial regulatory proteins, luxR family RAM_RS37665 PF07519 Tannase and feruloyl esterase RAM_RS37670 PF00248 Aldo/keto reductase family RAM_RS37675 PF01979 Amidohydrolase family RAM_RS37675 PF13382 Adenine deaminase C-terminal domain RAM_RS37695 PF01301 Glycosyl hydrolases family 35 RAM_RS37700 PF06964 Alpha-L-arabinofuranosidase C-terminal domain RAM_RS37710 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS37715 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS37720 PF00356 Bacterial regulatory proteins, lacI family RAM_RS37740 PF12695 Alpha/beta hydrolase family RAM_RS37745 PF00107 Zinc-binding dehydrogenase RAM_RS37745 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS37750 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_RS37750 PF00440 Bacterial regulatory proteins, tetR family RAM_RS37760 PF02469 Fasciclin domain RAM_RS37770 PF10099 Anti-sigma-K factor rskA RAM_RS37775 PF04545 Sigma-70, region 4 RAM_RS37775 PF04542 Sigma-70 region 2 RAM_RS37780 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_RS37785 PF00501 AMP-binding enzyme RAM_RS37785 PF13193 AMP-binding enzyme C-terminal domain RAM_RS37790 PF00920 Dehydratase family RAM_RS37795 PF05173 Dihydrodipicolinate reductase, C-terminus RAM_RS37795 PF01113 Dihydrodipicolinate reductase, N-terminus RAM_RS37805 PF05199 GMC oxidoreductase RAM_RS37805 PF00732 GMC oxidoreductase RAM_RS37820 PF08281 Sigma-70, region 4 RAM_RS37820 PF04542 Sigma-70 region 2 RAM_RS37830 PF04542 Sigma-70 region 2 RAM_RS37830 PF08281 Sigma-70, region 4 RAM_RS37840 PF01979 Amidohydrolase family RAM_RS37845 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS37845 PF03707 Bacterial signalling protein N terminal repeat RAM_RS37845 PF00563 EAL domain RAM_RS37850 PF04199 Putative cyclase RAM_RS37865 PF07690 Major Facilitator Superfamily RAM_RS37870 PF00041 Fibronectin type III domain RAM_RS37870 PF00704 Glycosyl hydrolases family 18 RAM_RS37870 PF00553 Cellulose binding domain RAM_RS37885 PF13302 Acetyltransferase (GNAT) domain RAM_RS37890 PF04075 F420H(2)-dependent quinone reductase RAM_RS37895 PF01209 ubiE/COQ5 methyltransferase family RAM_RS37900 PF17853 GGDEF-like domain RAM_RS37900 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS37900 PF07905 Purine catabolism regulatory protein-like family RAM_RS37910 PF13443 Cro/C1-type HTH DNA-binding domain RAM_RS37920 PF11271 Porin PorA RAM_RS37925 PF08241 Methyltransferase domain RAM_RS37930 PF08323 Starch synthase catalytic domain RAM_RS37930 PF00534 Glycosyl transferases group 1 RAM_RS37955 PF11847 Alpha-(1->3)-arabinofuranosyltransferase RAM_RS37980 PF00392 Bacterial regulatory proteins, gntR family RAM_RS37985 PF02627 Carboxymuconolactone decarboxylase family RAM_RS37990 PF07690 Major Facilitator Superfamily RAM_RS37995 PF07690 Major Facilitator Superfamily RAM_RS38010 PF13180 PDZ domain RAM_RS38015 PF01266 FAD dependent oxidoreductase RAM_RS38015 PF16350 FAD dependent oxidoreductase central domain RAM_RS38015 PF01571 Aminomethyltransferase folate-binding domain RAM_RS38015 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_RS38020 PF00551 Formyl transferase RAM_RS38030 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_RS38030 PF01571 Aminomethyltransferase folate-binding domain RAM_RS38030 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS38030 PF17806 Sarcosine oxidase A3 domain RAM_RS38035 PF04267 Sarcosine oxidase, delta subunit family RAM_RS38040 PF01266 FAD dependent oxidoreductase RAM_RS38045 PF00464 Serine hydroxymethyltransferase RAM_RS38050 PF07729 FCD domain RAM_RS38050 PF00392 Bacterial regulatory proteins, gntR family RAM_RS38055 PF00355 Rieske [2Fe-2S] domain RAM_RS38055 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RAM_RS38060 PF00440 Bacterial regulatory proteins, tetR family RAM_RS38065 PF00171 Aldehyde dehydrogenase family RAM_RS38075 PF00732 GMC oxidoreductase RAM_RS38075 PF05199 GMC oxidoreductase RAM_RS38085 PF00355 Rieske [2Fe-2S] domain RAM_RS38090 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS38090 PF14759 Reductase C-terminal RAM_RS38100 PF00561 alpha/beta hydrolase fold RAM_RS38120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_RS38120 PF02817 e3 binding domain RAM_RS38120 PF00364 Biotin-requiring enzyme RAM_RS38125 PF02779 Transketolase, pyrimidine binding domain RAM_RS38125 PF02780 Transketolase, C-terminal domain RAM_RS38130 PF00676 Dehydrogenase E1 component RAM_RS38145 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS38145 PF14310 Fibronectin type III-like domain RAM_RS38145 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS38160 PF00486 Transcriptional regulatory protein, C terminal RAM_RS38160 PF00072 Response regulator receiver domain RAM_RS38165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS38165 PF00989 PAS fold RAM_RS38165 PF16736 Single Cache-like RAM_RS38165 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS38170 PF01494 FAD binding domain RAM_RS38180 PF02018 Carbohydrate binding domain RAM_RS38180 PF00041 Fibronectin type III domain RAM_RS38180 PF00704 Glycosyl hydrolases family 18 RAM_RS38195 PF00069 Protein kinase domain RAM_RS38195 PF03793 PASTA domain RAM_RS38215 PF01022 Bacterial regulatory protein, arsR family RAM_RS38225 PF04261 Dyp-type peroxidase family RAM_RS38230 PF04185 Phosphoesterase family RAM_RS38230 PF05506 Domain of unknown function (DUF756) RAM_RS38245 PF00072 Response regulator receiver domain RAM_RS38250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS38250 PF01590 GAF domain RAM_RS38250 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS38250 PF08446 PAS fold RAM_RS38250 PF00360 Phytochrome region RAM_RS38255 PF00486 Transcriptional regulatory protein, C terminal RAM_RS38255 PF00072 Response regulator receiver domain RAM_RS38300 PF12697 Alpha/beta hydrolase family RAM_RS38305 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS38305 PF17853 GGDEF-like domain RAM_RS38315 PF14765 Polyketide synthase dehydratase RAM_RS38315 PF00550 Phosphopantetheine attachment site RAM_RS38315 PF08659 KR domain RAM_RS38315 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS38315 PF00698 Acyl transferase domain RAM_RS38315 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS38315 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS38335 PF02470 MlaD protein RAM_RS38360 PF02405 Permease MlaE RAM_RS38380 PF00005 ABC transporter RAM_RS38380 PF13732 Domain of unknown function (DUF4162) RAM_RS38385 PF01061 ABC-2 type transporter RAM_RS38435 PF00440 Bacterial regulatory proteins, tetR family RAM_RS38440 PF01872 RibD C-terminal domain RAM_RS38440 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_RS38460 PF01636 Phosphotransferase enzyme family RAM_RS38465 PF00440 Bacterial regulatory proteins, tetR family RAM_RS38485 PF00501 AMP-binding enzyme RAM_RS38485 PF13193 AMP-binding enzyme C-terminal domain RAM_RS38490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS38490 PF00384 Molybdopterin oxidoreductase RAM_RS38490 PF01568 Molydopterin dinucleotide binding domain RAM_RS38495 PF00296 Luciferase-like monooxygenase RAM_RS38505 PF01638 HxlR-like helix-turn-helix RAM_RS38515 PF12833 Helix-turn-helix domain RAM_RS38515 PF01965 DJ-1/PfpI family RAM_RS38525 PF00583 Acetyltransferase (GNAT) family RAM_RS38540 PF07690 Major Facilitator Superfamily RAM_RS38545 PF00561 alpha/beta hydrolase fold RAM_RS38580 PF03466 LysR substrate binding domain RAM_RS38580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS38605 PF02096 60Kd inner membrane protein RAM_RS38615 PF00149 Calcineurin-like phosphoesterase RAM_RS38625 PF01661 Macro domain RAM_RS38630 PF13419 Haloacid dehalogenase-like hydrolase RAM_RS38655 PF03259 Roadblock/LC7 domain RAM_RS38670 PF00501 AMP-binding enzyme RAM_RS38685 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS38685 PF08448 PAS fold RAM_RS38700 PF03816 Cell envelope-related transcriptional attenuator domain RAM_RS38700 PF13399 LytR cell envelope-related transcriptional attenuator RAM_RS38710 PF00743 Flavin-binding monooxygenase-like RAM_RS38740 PF01965 DJ-1/PfpI family RAM_RS38740 PF12833 Helix-turn-helix domain RAM_RS38745 PF00248 Aldo/keto reductase family RAM_RS38750 PF12833 Helix-turn-helix domain RAM_RS38750 PF06719 AraC-type transcriptional regulator N-terminus RAM_RS38770 PF00578 AhpC/TSA family RAM_RS38780 PF01725 Ham1 family RAM_RS38785 PF01138 3' exoribonuclease family, domain 1 RAM_RS38785 PF03725 3' exoribonuclease family, domain 2 RAM_RS38790 PF12706 Beta-lactamase superfamily domain RAM_RS38795 PF01177 Asp/Glu/Hydantoin racemase RAM_RS38800 PF01694 Rhomboid family RAM_RS38810 PF01177 Asp/Glu/Hydantoin racemase RAM_RS38820 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS38825 PF02597 ThiS family RAM_RS38830 PF14464 Prokaryotic homologs of the JAB domain RAM_RS38840 PF03576 Peptidase family S58 RAM_RS38845 PF09438 Domain of unknown function (DUF2017) RAM_RS38850 PF02617 ATP-dependent Clp protease adaptor protein ClpS RAM_RS38855 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RAM_RS38855 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RAM_RS38860 PF00857 Isochorismatase family RAM_RS38865 PF01081 KDPG and KHG aldolase RAM_RS38875 PF02632 BioY family RAM_RS38880 PF13307 Helicase C-terminal domain RAM_RS38910 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAM_RS38920 PF00561 alpha/beta hydrolase fold RAM_RS38925 PF13302 Acetyltransferase (GNAT) domain RAM_RS38935 PF01527 Transposase RAM_RS38940 PF13333 Integrase core domain RAM_RS38940 PF13276 HTH-like domain RAM_RS38940 PF00665 Integrase core domain RAM_RS38955 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_RS38960 PF01037 Lrp/AsnC ligand binding domain RAM_RS38970 PF01037 Lrp/AsnC ligand binding domain RAM_RS38975 PF00296 Luciferase-like monooxygenase RAM_RS38985 PF01980 tRNA-methyltransferase O RAM_RS38985 PF18389 TrmO C-terminal domain RAM_RS38990 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS38990 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS38995 PF00391 PEP-utilising enzyme, mobile domain RAM_RS38995 PF05524 PEP-utilising enzyme, N-terminal RAM_RS38995 PF03610 PTS system fructose IIA component RAM_RS38995 PF00381 PTS HPr component phosphorylation site RAM_RS39000 PF02734 DAK2 domain RAM_RS39005 PF02733 Dak1 domain RAM_RS39020 PF00474 Sodium:solute symporter family RAM_RS39035 PF01939 Endonuclease NucS RAM_RS39040 PF00293 NUDIX domain RAM_RS39055 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS39060 PF12833 Helix-turn-helix domain RAM_RS39060 PF01965 DJ-1/PfpI family RAM_RS39065 PF00857 Isochorismatase family RAM_RS39070 PF02310 B12 binding domain RAM_RS39070 PF01642 Methylmalonyl-CoA mutase RAM_RS39085 PF01810 LysE type translocator RAM_RS39090 PF01810 LysE type translocator RAM_RS39100 PF01370 NAD dependent epimerase/dehydratase family RAM_RS39105 PF12680 SnoaL-like domain RAM_RS39110 PF00440 Bacterial regulatory proteins, tetR family RAM_RS39110 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_RS39115 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RAM_RS39120 PF01923 Cobalamin adenosyltransferase RAM_RS39125 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RAM_RS39130 PF10739 Protein of unknown function (DUF2550) RAM_RS39135 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RAM_RS39140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_RS39140 PF02874 ATP synthase alpha/beta family, beta-barrel domain RAM_RS39145 PF00231 ATP synthase RAM_RS39150 PF00306 ATP synthase alpha/beta chain, C terminal domain RAM_RS39150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_RS39150 PF02874 ATP synthase alpha/beta family, beta-barrel domain RAM_RS39155 PF00213 ATP synthase delta (OSCP) subunit RAM_RS39160 PF00430 ATP synthase B/B' CF(0) RAM_RS39165 PF00137 ATP synthase subunit C RAM_RS39170 PF00119 ATP synthase A chain RAM_RS39180 PF00953 Glycosyl transferase family 4 RAM_RS39185 PF01300 Telomere recombination RAM_RS39195 PF05175 Methyltransferase small domain RAM_RS39195 PF17827 PrmC N-terminal domain RAM_RS39200 PF00535 Glycosyl transferase family 2 RAM_RS39215 PF03462 PCRF domain RAM_RS39215 PF00472 RF-1 domain RAM_RS39220 PF01197 Ribosomal protein L31 RAM_RS39225 PF07497 Rho termination factor, RNA-binding domain RAM_RS39225 PF07498 Rho termination factor, N-terminal domain RAM_RS39225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_RS39230 PF00288 GHMP kinases N terminal domain RAM_RS39235 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS39240 PF03447 Homoserine dehydrogenase, NAD binding domain RAM_RS39240 PF00742 Homoserine dehydrogenase RAM_RS39240 PF01842 ACT domain RAM_RS39245 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_RS39245 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_RS39250 PF05746 DALR anticodon binding domain RAM_RS39250 PF00750 tRNA synthetases class I (R) RAM_RS39250 PF03485 Arginyl tRNA synthetase N terminal domain RAM_RS39270 PF01545 Cation efflux family RAM_RS39280 PF00106 short chain dehydrogenase RAM_RS39285 PF06441 Epoxide hydrolase N terminus RAM_RS39300 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS39300 PF00107 Zinc-binding dehydrogenase RAM_RS39310 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_RS39365 PF01975 Survival protein SurE RAM_RS39380 PF00486 Transcriptional regulatory protein, C terminal RAM_RS39380 PF00931 NB-ARC domain RAM_RS39380 PF03704 Bacterial transcriptional activator domain RAM_RS39385 PF00258 Flavodoxin RAM_RS39385 PF00175 Oxidoreductase NAD-binding domain RAM_RS39385 PF00667 FAD binding domain RAM_RS39385 PF00067 Cytochrome P450 RAM_RS39395 PF00295 Glycosyl hydrolases family 28 RAM_RS39400 PF00704 Glycosyl hydrolases family 18 RAM_RS39400 PF00041 Fibronectin type III domain RAM_RS39405 PF16499 Alpha galactosidase A RAM_RS39405 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_RS39410 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS39410 PF03664 Glycosyl hydrolase family 62 RAM_RS39415 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_RS39415 PF00942 Cellulose binding domain RAM_RS39415 PF12891 Glycoside hydrolase family 44 RAM_RS39420 PF00480 ROK family RAM_RS39425 PF00703 Glycosyl hydrolases family 2 RAM_RS39425 PF16355 Domain of unknown function (DUF4982) RAM_RS39425 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 RAM_RS39425 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_RS39425 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_RS39430 PF03664 Glycosyl hydrolase family 62 RAM_RS39430 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS39435 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS39435 PF00331 Glycosyl hydrolase family 10 RAM_RS39450 PF00942 Cellulose binding domain RAM_RS39450 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_RS39450 PF12891 Glycoside hydrolase family 44 RAM_RS39470 PF13229 Right handed beta helix region RAM_RS39485 PF01494 FAD binding domain RAM_RS39495 PF13808 DDE_Tnp_1-associated RAM_RS39495 PF01609 Transposase DDE domain RAM_RS39545 PF00202 Aminotransferase class-III RAM_RS39550 PF02515 CoA-transferase family III RAM_RS39575 PF02538 Hydantoinase B/oxoprolinase RAM_RS39580 PF05378 Hydantoinase/oxoprolinase N-terminal region RAM_RS39580 PF01968 Hydantoinase/oxoprolinase RAM_RS39585 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS39585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS39585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS39595 PF06974 Protein of unknown function (DUF1298) RAM_RS39595 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RAM_RS39605 PF03070 TENA/THI-4/PQQC family RAM_RS39610 PF05402 Coenzyme PQQ synthesis protein D (PqqD) RAM_RS39615 PF13186 Iron-sulfur cluster-binding domain RAM_RS39615 PF04055 Radical SAM superfamily RAM_RS39620 PF12706 Beta-lactamase superfamily domain RAM_RS39635 PF01425 Amidase RAM_RS39640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_RS39665 PF00180 Isocitrate/isopropylmalate dehydrogenase RAM_RS39670 PF00171 Aldehyde dehydrogenase family RAM_RS39675 PF00202 Aminotransferase class-III RAM_RS39685 PF00248 Aldo/keto reductase family RAM_RS39700 PF02913 FAD linked oxidases, C-terminal domain RAM_RS39700 PF01565 FAD binding domain RAM_RS39705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS39705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS39720 PF07690 Major Facilitator Superfamily RAM_RS39730 PF07730 Histidine kinase RAM_RS39735 PF00196 Bacterial regulatory proteins, luxR family RAM_RS39735 PF00072 Response regulator receiver domain RAM_RS39740 PF03176 MMPL family RAM_RS39745 PF07971 Glycosyl hydrolase family 92 RAM_RS39745 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_RS39750 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS39750 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS39750 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS39755 PF02803 Thiolase, C-terminal domain RAM_RS39755 PF00108 Thiolase, N-terminal domain RAM_RS39760 PF00440 Bacterial regulatory proteins, tetR family RAM_RS39790 PF06772 Bacterial low temperature requirement A protein (LtrA) RAM_RS39795 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS39795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS39795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS39800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS39800 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS39800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS39845 PF00293 NUDIX domain RAM_RS39845 PF13344 Haloacid dehalogenase-like hydrolase RAM_RS39860 PF00106 short chain dehydrogenase RAM_RS39870 PF00557 Metallopeptidase family M24 RAM_RS39890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS39890 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS39890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS39895 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_RS39895 PF00364 Biotin-requiring enzyme RAM_RS39895 PF00289 Biotin carboxylase, N-terminal domain RAM_RS39895 PF02785 Biotin carboxylase C-terminal domain RAM_RS39900 PF01039 Carboxyl transferase domain RAM_RS39905 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_RS39915 PF00440 Bacterial regulatory proteins, tetR family RAM_RS39930 PF00561 alpha/beta hydrolase fold RAM_RS39935 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_RS39940 PF01494 FAD binding domain RAM_RS39945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_RS39965 PF13847 Methyltransferase domain RAM_RS39970 PF06018 CodY GAF-like domain RAM_RS39970 PF13556 PucR C-terminal helix-turn-helix domain RAM_RS39970 PF17853 GGDEF-like domain RAM_RS39980 PF00107 Zinc-binding dehydrogenase RAM_RS39980 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS39985 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAM_RS39985 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RAM_RS39995 PF16527 Two-component sensor protein CpxA, periplasmic domain RAM_RS39995 PF00672 HAMP domain RAM_RS39995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS39995 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS40005 PF00486 Transcriptional regulatory protein, C terminal RAM_RS40005 PF00072 Response regulator receiver domain RAM_RS40010 PF00005 ABC transporter RAM_RS40020 PF00005 ABC transporter RAM_RS40020 PF00664 ABC transporter transmembrane region RAM_RS40035 PF16870 2-oxoglutarate dehydrogenase C-terminal RAM_RS40035 PF02779 Transketolase, pyrimidine binding domain RAM_RS40035 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_RS40035 PF16078 2-oxoglutarate dehydrogenase N-terminus RAM_RS40035 PF00676 Dehydrogenase E1 component RAM_RS40040 PF00561 alpha/beta hydrolase fold RAM_RS40045 PF00535 Glycosyl transferase family 2 RAM_RS40045 PF02709 N-terminal domain of galactosyltransferase RAM_RS40050 PF07690 Major Facilitator Superfamily RAM_RS40060 PF00296 Luciferase-like monooxygenase RAM_RS40075 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS40080 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS40085 PF00005 ABC transporter RAM_RS40085 PF00571 CBS domain RAM_RS40095 PF00390 Malic enzyme, N-terminal domain RAM_RS40095 PF03949 Malic enzyme, NAD binding domain RAM_RS40100 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RAM_RS40110 PF01047 MarR family RAM_RS40125 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS40140 PF00781 Diacylglycerol kinase catalytic domain RAM_RS40145 PF02467 Transcription factor WhiB RAM_RS40150 PF12282 Signal transduction histidine kinase RAM_RS40150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS40150 PF07568 Histidine kinase RAM_RS40160 PF13490 Putative zinc-finger RAM_RS40165 PF08281 Sigma-70, region 4 RAM_RS40165 PF04542 Sigma-70 region 2 RAM_RS40170 PF04073 Aminoacyl-tRNA editing domain RAM_RS40180 PF02586 SOS response associated peptidase (SRAP) RAM_RS40185 PF03193 RsgA GTPase RAM_RS40205 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RAM_RS40210 PF00588 SpoU rRNA Methylase family RAM_RS40210 PF08032 RNA 2'-O ribose methyltransferase substrate binding RAM_RS40215 PF13419 Haloacid dehalogenase-like hydrolase RAM_RS40225 PF00067 Cytochrome P450 RAM_RS40230 PF07516 SecA Wing and Scaffold domain RAM_RS40230 PF07517 SecA DEAD-like domain RAM_RS40230 PF01043 SecA preprotein cross-linking domain RAM_RS40235 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RAM_RS40235 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RAM_RS40245 PF10647 Lipoprotein LpqB beta-propeller domain RAM_RS40245 PF10646 Sporulation and spore germination RAM_RS40250 PF00672 HAMP domain RAM_RS40250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS40250 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS40255 PF00072 Response regulator receiver domain RAM_RS40255 PF00486 Transcriptional regulatory protein, C terminal RAM_RS40260 PF00355 Rieske [2Fe-2S] domain RAM_RS40265 PF09339 IclR helix-turn-helix domain RAM_RS40265 PF01614 Bacterial transcriptional regulator RAM_RS40280 PF16350 FAD dependent oxidoreductase central domain RAM_RS40280 PF01266 FAD dependent oxidoreductase RAM_RS40280 PF01571 Aminomethyltransferase folate-binding domain RAM_RS40280 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_RS40285 PF02223 Thymidylate kinase RAM_RS40320 PF05221 S-adenosyl-L-homocysteine hydrolase RAM_RS40320 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RAM_RS40335 PF13520 Amino acid permease RAM_RS40345 PF00486 Transcriptional regulatory protein, C terminal RAM_RS40345 PF00931 NB-ARC domain RAM_RS40345 PF03704 Bacterial transcriptional activator domain RAM_RS40350 PF01238 Phosphomannose isomerase type I RAM_RS40360 PF03966 Trm112p-like protein RAM_RS40365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RAM_RS40365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RAM_RS40365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RAM_RS40365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RAM_RS40385 PF02467 Transcription factor WhiB RAM_RS40405 PF02585 GlcNAc-PI de-N-acetylase RAM_RS40410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS40410 PF00005 ABC transporter RAM_RS40415 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS40420 PF12911 N-terminal TM domain of oligopeptide transport permease C RAM_RS40420 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS40425 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS40435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_RS40440 PF00679 Elongation factor G C-terminus RAM_RS40440 PF03144 Elongation factor Tu domain 2 RAM_RS40440 PF14492 Elongation Factor G, domain II RAM_RS40440 PF00009 Elongation factor Tu GTP binding domain RAM_RS40450 PF00579 tRNA synthetases class I (W and Y) RAM_RS40455 PF00300 Histidine phosphatase superfamily (branch 1) RAM_RS40455 PF00293 NUDIX domain RAM_RS40460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS40460 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS40465 PF00072 Response regulator receiver domain RAM_RS40465 PF00486 Transcriptional regulatory protein, C terminal RAM_RS40475 PF00005 ABC transporter RAM_RS40485 PF00005 ABC transporter RAM_RS40485 PF08402 TOBE domain RAM_RS40490 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS40500 PF01329 Pterin 4 alpha carbinolamine dehydratase RAM_RS40520 PF06071 Protein of unknown function (DUF933) RAM_RS40520 PF01926 50S ribosome-binding GTPase RAM_RS40525 PF06029 AlkA N-terminal domain RAM_RS40525 PF02805 Metal binding domain of Ada RAM_RS40525 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_RS40525 PF12833 Helix-turn-helix domain RAM_RS40535 PF13476 AAA domain RAM_RS40540 PF00149 Calcineurin-like phosphoesterase RAM_RS40540 PF12320 Type 5 capsule protein repressor C-terminal domain RAM_RS40555 PF02401 LytB protein RAM_RS40565 PF13742 OB-fold nucleic acid binding domain RAM_RS40565 PF02601 Exonuclease VII, large subunit RAM_RS40575 PF02609 Exonuclease VII small subunit RAM_RS40580 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RAM_RS40590 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS40595 PF00206 Lyase RAM_RS40595 PF10415 Fumarase C C-terminus RAM_RS40605 PF04679 ATP dependent DNA ligase C terminal region RAM_RS40605 PF04675 DNA ligase N terminus RAM_RS40605 PF01068 ATP dependent DNA ligase domain RAM_RS40620 PF00753 Metallo-beta-lactamase superfamily RAM_RS40640 PF00571 CBS domain RAM_RS40640 PF00478 IMP dehydrogenase / GMP reductase domain RAM_RS40645 PF01979 Amidohydrolase family RAM_RS40650 PF13638 PIN domain RAM_RS40650 PF02562 PhoH-like protein RAM_RS40655 PF01255 Putative undecaprenyl diphosphate synthase RAM_RS40660 PF03006 Haemolysin-III related RAM_RS40675 PF09557 Domain of unknown function (DUF2382) RAM_RS40675 PF11181 Heat induced stress protein YflT RAM_RS40685 PF08548 Peptidase M10 serralysin C terminal RAM_RS40685 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RAM_RS40685 PF12708 Pectate lyase superfamily protein RAM_RS40705 PF03190 Protein of unknown function, DUF255 RAM_RS40720 PF05175 Methyltransferase small domain RAM_RS40720 PF17827 PrmC N-terminal domain RAM_RS40725 PF00149 Calcineurin-like phosphoesterase RAM_RS40735 PF02585 GlcNAc-PI de-N-acetylase RAM_RS40745 PF01272 Transcription elongation factor, GreA/GreB, C-term RAM_RS40745 PF03449 Transcription elongation factor, N-terminal RAM_RS40755 PF01037 Lrp/AsnC ligand binding domain RAM_RS40755 PF13404 AsnC-type helix-turn-helix domain RAM_RS40760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_RS40790 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS40790 PF13291 ACT domain RAM_RS40805 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_RS40820 PF00571 CBS domain RAM_RS40820 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS40825 PF00108 Thiolase, N-terminal domain RAM_RS40825 PF02803 Thiolase, C-terminal domain RAM_RS40850 PF00106 short chain dehydrogenase RAM_RS40895 PF00498 FHA domain RAM_RS40895 PF03704 Bacterial transcriptional activator domain RAM_RS40895 PF00486 Transcriptional regulatory protein, C terminal RAM_RS40900 PF00931 NB-ARC domain RAM_RS40900 PF00486 Transcriptional regulatory protein, C terminal RAM_RS40900 PF03704 Bacterial transcriptional activator domain RAM_RS40905 PF00232 Glycosyl hydrolase family 1 RAM_RS40910 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS40915 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS40925 PF00196 Bacterial regulatory proteins, luxR family RAM_RS40925 PF00072 Response regulator receiver domain RAM_RS40930 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS40935 PF00248 Aldo/keto reductase family RAM_RS40945 PF07690 Major Facilitator Superfamily RAM_RS40965 PF00975 Thioesterase domain RAM_RS40970 PF02983 Alpha-lytic protease prodomain RAM_RS40975 PF12833 Helix-turn-helix domain RAM_RS40990 PF00553 Cellulose binding domain RAM_RS40990 PF00041 Fibronectin type III domain RAM_RS40990 PF01341 Glycosyl hydrolases family 6 RAM_RS40995 PF03764 Elongation factor G, domain IV RAM_RS40995 PF00679 Elongation factor G C-terminus RAM_RS40995 PF00009 Elongation factor Tu GTP binding domain RAM_RS41005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS41005 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS41005 PF00672 HAMP domain RAM_RS41010 PF00113 Enolase, C-terminal TIM barrel domain RAM_RS41010 PF03952 Enolase, N-terminal domain RAM_RS41015 PF10502 Signal peptidase, peptidase S26 RAM_RS41020 PF00005 ABC transporter RAM_RS41020 PF00664 ABC transporter transmembrane region RAM_RS41045 PF00196 Bacterial regulatory proteins, luxR family RAM_RS41050 PF01494 FAD binding domain RAM_RS41060 PF00196 Bacterial regulatory proteins, luxR family RAM_RS41115 PF08281 Sigma-70, region 4 RAM_RS41115 PF04542 Sigma-70 region 2 RAM_RS41120 PF00069 Protein kinase domain RAM_RS41120 PF03793 PASTA domain RAM_RS41150 PF00440 Bacterial regulatory proteins, tetR family RAM_RS41155 PF04542 Sigma-70 region 2 RAM_RS41155 PF04545 Sigma-70, region 4 RAM_RS41155 PF04539 Sigma-70 region 3 RAM_RS41220 PF03167 Uracil DNA glycosylase superfamily RAM_RS41225 PF04493 Endonuclease V RAM_RS41235 PF00082 Subtilase family RAM_RS41240 PF00005 ABC transporter RAM_RS41240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS41245 PF00005 ABC transporter RAM_RS41245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS41250 PF12911 N-terminal TM domain of oligopeptide transport permease C RAM_RS41250 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS41255 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS41260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_RS41265 PF02541 Ppx/GppA phosphatase family RAM_RS41285 PF00113 Enolase, C-terminal TIM barrel domain RAM_RS41285 PF03952 Enolase, N-terminal domain RAM_RS41305 PF03239 Iron permease FTR1 family RAM_RS41310 PF09375 Imelysin RAM_RS41310 PF13473 Cupredoxin-like domain RAM_RS41315 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_RS41315 PF04261 Dyp-type peroxidase family RAM_RS41330 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_RS41345 PF00005 ABC transporter RAM_RS41355 PF08281 Sigma-70, region 4 RAM_RS41355 PF04542 Sigma-70 region 2 RAM_RS41360 PF03819 MazG nucleotide pyrophosphohydrolase domain RAM_RS41380 PF02559 CarD-like/TRCF domain RAM_RS41380 PF00270 DEAD/DEAH box helicase RAM_RS41380 PF00271 Helicase conserved C-terminal domain RAM_RS41380 PF03461 TRCF domain RAM_RS41380 PF17757 UvrB interaction domain RAM_RS41395 PF09335 SNARE associated Golgi protein RAM_RS41400 PF00398 Ribosomal RNA adenine dimethylase RAM_RS41405 PF07730 Histidine kinase RAM_RS41410 PF00072 Response regulator receiver domain RAM_RS41410 PF00196 Bacterial regulatory proteins, luxR family RAM_RS41415 PF07995 Glucose / Sorbosone dehydrogenase RAM_RS41435 PF00293 NUDIX domain RAM_RS41440 PF18665 Tetracyclin repressor-like, C-terminal domain RAM_RS41440 PF00440 Bacterial regulatory proteins, tetR family RAM_RS41455 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS41460 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_RS41460 PF12804 MobA-like NTP transferase domain RAM_RS41465 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RAM_RS41465 PF14572 Phosphoribosyl synthetase-associated domain RAM_RS41485 PF01386 Ribosomal L25p family RAM_RS41485 PF14693 Ribosomal protein TL5, C-terminal domain RAM_RS41490 PF01195 Peptidyl-tRNA hydrolase RAM_RS41495 PF05103 DivIVA protein RAM_RS41505 PF14535 AMP-binding enzyme C-terminal domain RAM_RS41505 PF00501 AMP-binding enzyme RAM_RS41510 PF12848 ABC transporter RAM_RS41510 PF16326 ABC transporter C-terminal domain RAM_RS41510 PF00005 ABC transporter RAM_RS41520 PF00288 GHMP kinases N terminal domain RAM_RS41520 PF08544 GHMP kinases C terminal RAM_RS41525 PF00005 ABC transporter RAM_RS41525 PF09383 NIL domain RAM_RS41530 PF00398 Ribosomal RNA adenine dimethylase RAM_RS41535 PF06737 Transglycosylase-like domain RAM_RS41535 PF07501 G5 domain RAM_RS41535 PF03990 G5-linked-Ubiquitin-like domain RAM_RS41540 PF01026 TatD related DNase RAM_RS41545 PF08264 Anticodon-binding domain of tRNA RAM_RS41545 PF09334 tRNA synthetases class I (M) RAM_RS41555 PF13732 Domain of unknown function (DUF4162) RAM_RS41555 PF00005 ABC transporter RAM_RS41570 PF00425 chorismate binding enzyme RAM_RS41570 PF04715 Anthranilate synthase component I, N terminal region RAM_RS41575 PF00107 Zinc-binding dehydrogenase RAM_RS41575 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS41585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_RS41590 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RAM_RS41590 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase RAM_RS41600 PF00398 Ribosomal RNA adenine dimethylase RAM_RS41605 PF03793 PASTA domain RAM_RS41605 PF00069 Protein kinase domain RAM_RS41610 PF00501 AMP-binding enzyme RAM_RS41610 PF16177 Acetyl-coenzyme A synthetase N-terminus RAM_RS41610 PF13193 AMP-binding enzyme C-terminal domain RAM_RS41615 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_RS41615 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_RS41625 PF03473 MOSC domain RAM_RS41625 PF03475 3-alpha domain RAM_RS41635 PF03358 NADPH-dependent FMN reductase RAM_RS41640 PF08281 Sigma-70, region 4 RAM_RS41640 PF04542 Sigma-70 region 2 RAM_RS41640 PF12680 SnoaL-like domain RAM_RS41675 PF03176 MMPL family RAM_RS41685 PF08448 PAS fold RAM_RS41685 PF00563 EAL domain RAM_RS41685 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS41685 PF08447 PAS fold RAM_RS41695 PF00067 Cytochrome P450 RAM_RS41700 PF13614 AAA domain RAM_RS41715 PF13460 NAD(P)H-binding RAM_RS41725 PF00072 Response regulator receiver domain RAM_RS41725 PF00486 Transcriptional regulatory protein, C terminal RAM_RS41730 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS41730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS41730 PF00672 HAMP domain RAM_RS41735 PF01427 D-ala-D-ala dipeptidase RAM_RS41740 PF07478 D-ala D-ala ligase C-terminus RAM_RS41740 PF01820 D-ala D-ala ligase N-terminus RAM_RS41745 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_RS41745 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_RS41750 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS41755 PF01638 HxlR-like helix-turn-helix RAM_RS41760 PF00155 Aminotransferase class I and II RAM_RS41765 PF00550 Phosphopantetheine attachment site RAM_RS41765 PF00501 AMP-binding enzyme RAM_RS41765 PF00668 Condensation domain RAM_RS41765 PF08242 Methyltransferase domain RAM_RS41775 PF00975 Thioesterase domain RAM_RS41780 PF01810 LysE type translocator RAM_RS41790 PF03793 PASTA domain RAM_RS41790 PF00069 Protein kinase domain RAM_RS41845 PF13302 Acetyltransferase (GNAT) domain RAM_RS41850 PF00994 Probable molybdopterin binding domain RAM_RS41850 PF03453 MoeA N-terminal region (domain I and II) RAM_RS41850 PF03454 MoeA C-terminal region (domain IV) RAM_RS41855 PF00483 Nucleotidyl transferase RAM_RS41860 PF01812 5-formyltetrahydrofolate cyclo-ligase family RAM_RS41875 PF01741 Large-conductance mechanosensitive channel, MscL RAM_RS41885 PF00994 Probable molybdopterin binding domain RAM_RS41885 PF01967 MoaC family RAM_RS41890 PF01370 NAD dependent epimerase/dehydratase family RAM_RS41905 PF16736 Single Cache-like RAM_RS41905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS41905 PF00989 PAS fold RAM_RS41905 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS41910 PF00072 Response regulator receiver domain RAM_RS41910 PF00486 Transcriptional regulatory protein, C terminal RAM_RS41920 PF00535 Glycosyl transferase family 2 RAM_RS41930 PF08241 Methyltransferase domain RAM_RS41945 PF13180 PDZ domain RAM_RS41950 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RAM_RS41950 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RAM_RS41955 PF00455 DeoR C terminal sensor domain RAM_RS41955 PF08220 DeoR-like helix-turn-helix domain RAM_RS41960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS41960 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS41960 PF00672 HAMP domain RAM_RS41965 PF00072 Response regulator receiver domain RAM_RS41965 PF00486 Transcriptional regulatory protein, C terminal RAM_RS41970 PF03458 UPF0126 domain RAM_RS41975 PF00196 Bacterial regulatory proteins, luxR family RAM_RS41975 PF00072 Response regulator receiver domain RAM_RS41990 PF07690 Major Facilitator Superfamily RAM_RS41995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS41995 PF03466 LysR substrate binding domain RAM_RS42000 PF00248 Aldo/keto reductase family RAM_RS42005 PF00392 Bacterial regulatory proteins, gntR family RAM_RS42005 PF00155 Aminotransferase class I and II RAM_RS42020 PF00069 Protein kinase domain RAM_RS42020 PF03793 PASTA domain RAM_RS42025 PF00459 Inositol monophosphatase family RAM_RS42030 PF02633 Creatinine amidohydrolase RAM_RS42035 PF00925 GTP cyclohydrolase II RAM_RS42050 PF13439 Glycosyltransferase Family 4 RAM_RS42050 PF00534 Glycosyl transferases group 1 RAM_RS42070 PF13298 DNA polymerase Ligase (LigD) RAM_RS42070 PF01068 ATP dependent DNA ligase domain RAM_RS42070 PF04679 ATP dependent DNA ligase C terminal region RAM_RS42075 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) RAM_RS42080 PF03466 LysR substrate binding domain RAM_RS42080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS42085 PF01565 FAD binding domain RAM_RS42085 PF08031 Berberine and berberine like RAM_RS42090 PF01757 Acyltransferase family RAM_RS42095 PF04075 F420H(2)-dependent quinone reductase RAM_RS42130 PF01494 FAD binding domain RAM_RS42135 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS42135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS42135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS42145 PF00232 Glycosyl hydrolase family 1 RAM_RS42150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS42150 PF00005 ABC transporter RAM_RS42155 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS42155 PF12911 N-terminal TM domain of oligopeptide transport permease C RAM_RS42160 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS42165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS42165 PF00005 ABC transporter RAM_RS42170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_RS42180 PF01047 MarR family RAM_RS42180 PF00480 ROK family RAM_RS42185 PF00722 Glycosyl hydrolases family 16 RAM_RS42190 PF16483 Beta-1,3-glucanase RAM_RS42190 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS42195 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS42195 PF16483 Beta-1,3-glucanase RAM_RS42210 PF07690 Major Facilitator Superfamily RAM_RS42215 PF07286 Protein of unknown function (DUF1445) RAM_RS42220 PF03746 LamB/YcsF family RAM_RS42225 PF02682 Carboxyltransferase domain, subdomain C and D RAM_RS42230 PF02626 Carboxyltransferase domain, subdomain A and B RAM_RS42250 PF13532 2OG-Fe(II) oxygenase superfamily RAM_RS42255 PF00107 Zinc-binding dehydrogenase RAM_RS42255 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS42270 PF02742 Iron dependent repressor, metal binding and dimerisation domain RAM_RS42270 PF01325 Iron dependent repressor, N-terminal DNA binding domain RAM_RS42285 PF07969 Amidohydrolase family RAM_RS42290 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS42295 PF13193 AMP-binding enzyme C-terminal domain RAM_RS42295 PF00501 AMP-binding enzyme RAM_RS42310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS42310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS42310 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS42320 PF00425 chorismate binding enzyme RAM_RS42330 PF13193 AMP-binding enzyme C-terminal domain RAM_RS42330 PF00501 AMP-binding enzyme RAM_RS42335 PF13416 Bacterial extracellular solute-binding protein RAM_RS42340 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS42345 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS42370 PF12680 SnoaL-like domain RAM_RS42370 PF04542 Sigma-70 region 2 RAM_RS42370 PF08281 Sigma-70, region 4 RAM_RS42375 PF00107 Zinc-binding dehydrogenase RAM_RS42375 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS42385 PF02913 FAD linked oxidases, C-terminal domain RAM_RS42385 PF01565 FAD binding domain RAM_RS42390 PF00440 Bacterial regulatory proteins, tetR family RAM_RS42395 PF01266 FAD dependent oxidoreductase RAM_RS42395 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RAM_RS42410 PF13732 Domain of unknown function (DUF4162) RAM_RS42410 PF00005 ABC transporter RAM_RS42425 PF00875 DNA photolyase RAM_RS42425 PF03441 FAD binding domain of DNA photolyase RAM_RS42430 PF00285 Citrate synthase, C-terminal domain RAM_RS42435 PF00294 pfkB family carbohydrate kinase RAM_RS42445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS42445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS42445 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS42460 PF13382 Adenine deaminase C-terminal domain RAM_RS42460 PF01979 Amidohydrolase family RAM_RS42470 PF01263 Aldose 1-epimerase RAM_RS42475 PF00082 Subtilase family RAM_RS42475 PF09286 Pro-kumamolisin, activation domain RAM_RS42480 PF00440 Bacterial regulatory proteins, tetR family RAM_RS42485 PF00753 Metallo-beta-lactamase superfamily RAM_RS42490 PF00753 Metallo-beta-lactamase superfamily RAM_RS42500 PF05977 Transmembrane secretion effector RAM_RS42505 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RAM_RS42505 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_RS42520 PF03583 Secretory lipase RAM_RS42525 PF01774 UreD urease accessory protein RAM_RS42530 PF02492 CobW/HypB/UreG, nucleotide-binding domain RAM_RS42535 PF01730 UreF RAM_RS42540 PF00449 Urease alpha-subunit, N-terminal domain RAM_RS42540 PF01979 Amidohydrolase family RAM_RS42545 PF00699 Urease beta subunit RAM_RS42550 PF00547 Urease, gamma subunit RAM_RS42555 PF00285 Citrate synthase, C-terminal domain RAM_RS42565 PF00106 short chain dehydrogenase RAM_RS42565 PF00561 alpha/beta hydrolase fold RAM_RS42570 PF00005 ABC transporter RAM_RS42570 PF13732 Domain of unknown function (DUF4162) RAM_RS42580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS42580 PF07730 Histidine kinase RAM_RS42580 PF05231 MASE1 RAM_RS42585 PF00196 Bacterial regulatory proteins, luxR family RAM_RS42585 PF00072 Response regulator receiver domain RAM_RS42590 PF00144 Beta-lactamase RAM_RS42600 PF00266 Aminotransferase class-V RAM_RS42605 PF09594 Glycosyltransferase family 87 RAM_RS42610 PF01979 Amidohydrolase family RAM_RS42615 PF02687 FtsX-like permease family RAM_RS42615 PF12704 MacB-like periplasmic core domain RAM_RS42615 PF00005 ABC transporter RAM_RS42620 PF12704 MacB-like periplasmic core domain RAM_RS42620 PF02687 FtsX-like permease family RAM_RS42620 PF00005 ABC transporter RAM_RS42635 PF00486 Transcriptional regulatory protein, C terminal RAM_RS42635 PF00072 Response regulator receiver domain RAM_RS42640 PF00672 HAMP domain RAM_RS42640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS42640 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS42645 PF11268 Protein of unknown function (DUF3071) RAM_RS42665 PF00588 SpoU rRNA Methylase family RAM_RS42680 PF01126 Heme oxygenase RAM_RS42685 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RAM_RS42685 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RAM_RS42690 PF00797 N-acetyltransferase RAM_RS42695 PF05977 Transmembrane secretion effector RAM_RS42700 PF01047 MarR family RAM_RS42710 PF00860 Permease family RAM_RS42725 PF11228 Protein of unknown function (DUF3027) RAM_RS42735 PF07690 Major Facilitator Superfamily RAM_RS42745 PF00313 'Cold-shock' DNA-binding domain RAM_RS42755 PF13419 Haloacid dehalogenase-like hydrolase RAM_RS42760 PF00440 Bacterial regulatory proteins, tetR family RAM_RS42760 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_RS42765 PF00268 Ribonucleotide reductase, small chain RAM_RS42770 PF13193 AMP-binding enzyme C-terminal domain RAM_RS42770 PF00501 AMP-binding enzyme RAM_RS42780 PF04542 Sigma-70 region 2 RAM_RS42780 PF08281 Sigma-70, region 4 RAM_RS42785 PF03442 Carbohydrate binding domain X2 RAM_RS42785 PF00942 Cellulose binding domain RAM_RS42790 PF17862 AAA+ lid domain RAM_RS42790 PF01434 Peptidase family M41 RAM_RS42790 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS42790 PF06480 FtsH Extracellular RAM_RS42830 PF02567 Phenazine biosynthesis-like protein RAM_RS42835 PF03733 Inner membrane component domain RAM_RS42840 PF00149 Calcineurin-like phosphoesterase RAM_RS42845 PF13344 Haloacid dehalogenase-like hydrolase RAM_RS42850 PF07731 Multicopper oxidase RAM_RS42850 PF07732 Multicopper oxidase RAM_RS42855 PF00005 ABC transporter RAM_RS42855 PF03459 TOBE domain RAM_RS42860 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS42875 PF01047 MarR family RAM_RS42880 PF06463 Molybdenum Cofactor Synthesis C RAM_RS42880 PF04055 Radical SAM superfamily RAM_RS42890 PF06737 Transglycosylase-like domain RAM_RS42900 PF02391 MoaE protein RAM_RS42905 PF01967 MoaC family RAM_RS42910 PF00390 Malic enzyme, N-terminal domain RAM_RS42910 PF03949 Malic enzyme, NAD binding domain RAM_RS42935 PF03259 Roadblock/LC7 domain RAM_RS42950 PF03259 Roadblock/LC7 domain RAM_RS42955 PF08521 Two-component sensor kinase N-terminal RAM_RS42955 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS42955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS42960 PF09084 NMT1/THI5 like RAM_RS42965 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS42970 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS42975 PF00005 ABC transporter RAM_RS42980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_RS42980 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_RS42980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_RS42990 PF09286 Pro-kumamolisin, activation domain RAM_RS42990 PF04151 Bacterial pre-peptidase C-terminal domain RAM_RS43010 PF03932 CutC family RAM_RS43030 PF00271 Helicase conserved C-terminal domain RAM_RS43030 PF04851 Type III restriction enzyme, res subunit RAM_RS43050 PF13378 Enolase C-terminal domain-like RAM_RS43050 PF18374 Enolase N-terminal domain-like RAM_RS43065 PF00118 TCP-1/cpn60 chaperonin family RAM_RS43070 PF13462 Thioredoxin RAM_RS43070 PF00069 Protein kinase domain RAM_RS43075 PF00313 'Cold-shock' DNA-binding domain RAM_RS43090 PF03454 MoeA C-terminal region (domain IV) RAM_RS43090 PF00994 Probable molybdopterin binding domain RAM_RS43090 PF03453 MoeA N-terminal region (domain I and II) RAM_RS43105 PF04226 Transglycosylase associated protein RAM_RS43110 PF02666 Phosphatidylserine decarboxylase RAM_RS43115 PF01066 CDP-alcohol phosphatidyltransferase RAM_RS43120 PF01434 Peptidase family M41 RAM_RS43120 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS43120 PF17862 AAA+ lid domain RAM_RS43135 PF01327 Polypeptide deformylase RAM_RS43140 PF00723 Glycosyl hydrolases family 15 RAM_RS43140 PF09137 Glucodextranase, domain N RAM_RS43145 PF13180 PDZ domain RAM_RS43150 PF01964 Radical SAM ThiC family RAM_RS43150 PF13667 ThiC-associated domain RAM_RS43155 PF08543 Phosphomethylpyrimidine kinase RAM_RS43165 PF08543 Phosphomethylpyrimidine kinase RAM_RS43170 PF01047 MarR family RAM_RS43175 PF05690 Thiazole biosynthesis protein ThiG RAM_RS43185 PF05690 Thiazole biosynthesis protein ThiG RAM_RS43185 PF01266 FAD dependent oxidoreductase RAM_RS43190 PF02581 Thiamine monophosphate synthase RAM_RS43200 PF13291 ACT domain RAM_RS43200 PF00291 Pyridoxal-phosphate dependent enzyme RAM_RS43205 PF07690 Major Facilitator Superfamily RAM_RS43210 PF00392 Bacterial regulatory proteins, gntR family RAM_RS43210 PF07702 UTRA domain RAM_RS43215 PF01380 SIS domain RAM_RS43220 PF01869 BadF/BadG/BcrA/BcrD ATPase family RAM_RS43230 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RAM_RS43260 PF00931 NB-ARC domain RAM_RS43260 PF03704 Bacterial transcriptional activator domain RAM_RS43260 PF00486 Transcriptional regulatory protein, C terminal RAM_RS43265 PF05721 Phytanoyl-CoA dioxygenase (PhyH) RAM_RS43270 PF06339 Ectoine synthase RAM_RS43275 PF00202 Aminotransferase class-III RAM_RS43280 PF00583 Acetyltransferase (GNAT) family RAM_RS43285 PF11856 Protein of unknown function (DUF3376) RAM_RS43285 PF01734 Patatin-like phospholipase RAM_RS43290 PF00107 Zinc-binding dehydrogenase RAM_RS43290 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS43295 PF01638 HxlR-like helix-turn-helix RAM_RS43300 PF04286 Protein of unknown function (DUF445) RAM_RS43315 PF06305 Lipopolysaccharide assembly protein A domain RAM_RS43340 PF13193 AMP-binding enzyme C-terminal domain RAM_RS43340 PF00501 AMP-binding enzyme RAM_RS43350 PF00378 Enoyl-CoA hydratase/isomerase RAM_RS43365 PF07691 PA14 domain RAM_RS43365 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS43365 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS43365 PF14310 Fibronectin type III-like domain RAM_RS43375 PF01638 HxlR-like helix-turn-helix RAM_RS43400 PF00005 ABC transporter RAM_RS43410 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_RS43415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_RS43425 PF13380 CoA binding domain RAM_RS43440 PF00741 Gas vesicle protein RAM_RS43445 PF05121 Gas vesicle protein K RAM_RS43445 PF00741 Gas vesicle protein RAM_RS43450 PF00741 Gas vesicle protein RAM_RS43460 PF00741 Gas vesicle protein RAM_RS43470 PF00072 Response regulator receiver domain RAM_RS43470 PF00486 Transcriptional regulatory protein, C terminal RAM_RS43475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS43475 PF00672 HAMP domain RAM_RS43475 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS43480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_RS43480 PF07685 CobB/CobQ-like glutamine amidotransferase domain RAM_RS43485 PF02875 Mur ligase family, glutamate ligase domain RAM_RS43485 PF08245 Mur ligase middle domain RAM_RS43490 PF14765 Polyketide synthase dehydratase RAM_RS43490 PF00550 Phosphopantetheine attachment site RAM_RS43490 PF09277 Erythronolide synthase, docking RAM_RS43490 PF08659 KR domain RAM_RS43490 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_RS43490 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_RS43490 PF00698 Acyl transferase domain RAM_RS43490 PF08240 Alcohol dehydrogenase GroES-like domain RAM_RS43490 PF16197 Ketoacyl-synthetase C-terminal extension RAM_RS43490 PF08990 Erythronolide synthase docking RAM_RS43495 PF00440 Bacterial regulatory proteins, tetR family RAM_RS43495 PF18665 Tetracyclin repressor-like, C-terminal domain RAM_RS43505 PF02652 L-lactate permease RAM_RS43515 PF04542 Sigma-70 region 2 RAM_RS43515 PF08281 Sigma-70, region 4 RAM_RS43520 PF03795 YCII-related domain RAM_RS43525 PF03795 YCII-related domain RAM_RS43545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS43545 PF00672 HAMP domain RAM_RS43545 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS43585 PF04542 Sigma-70 region 2 RAM_RS43585 PF12680 SnoaL-like domain RAM_RS43585 PF08281 Sigma-70, region 4 RAM_RS43610 PF09286 Pro-kumamolisin, activation domain RAM_RS43610 PF00082 Subtilase family RAM_RS43625 PF13411 MerR HTH family regulatory protein RAM_RS43655 PF00982 Glycosyltransferase family 20 RAM_RS43675 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region RAM_RS43675 PF00326 Prolyl oligopeptidase family RAM_RS43680 PF08281 Sigma-70, region 4 RAM_RS43680 PF04542 Sigma-70 region 2 RAM_RS43690 PF06745 KaiC RAM_RS43690 PF18073 Rubredoxin metal binding domain RAM_RS43700 PF02559 CarD-like/TRCF domain RAM_RS43705 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RAM_RS43710 PF02542 YgbB family RAM_RS43730 PF01406 tRNA synthetases class I (C) catalytic domain RAM_RS43730 PF09190 DALR domain RAM_RS43735 PF00588 SpoU rRNA Methylase family RAM_RS43735 PF08032 RNA 2'-O ribose methyltransferase substrate binding RAM_RS43740 PF03062 MBOAT, membrane-bound O-acyltransferase family RAM_RS43770 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_RS43785 PF04286 Protein of unknown function (DUF445) RAM_RS43790 PF00950 ABC 3 transport family RAM_RS43795 PF00005 ABC transporter RAM_RS43800 PF01297 Zinc-uptake complex component A periplasmic RAM_RS43805 PF00356 Bacterial regulatory proteins, lacI family RAM_RS43810 PF00484 Carbonic anhydrase RAM_RS43815 PF06722 Protein of unknown function (DUF1205) RAM_RS43820 PF00633 Helix-hairpin-helix motif RAM_RS43820 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_RS43835 PF01433 Peptidase family M1 domain RAM_RS43835 PF11838 ERAP1-like C-terminal domain RAM_RS43840 PF06480 FtsH Extracellular RAM_RS43840 PF17862 AAA+ lid domain RAM_RS43840 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS43840 PF01434 Peptidase family M41 RAM_RS43845 PF03992 Antibiotic biosynthesis monooxygenase RAM_RS43850 PF02146 Sir2 family RAM_RS43905 PF00005 ABC transporter RAM_RS43905 PF13732 Domain of unknown function (DUF4162) RAM_RS43910 PF01061 ABC-2 type transporter RAM_RS43915 PF00196 Bacterial regulatory proteins, luxR family RAM_RS43925 PF01470 Pyroglutamyl peptidase RAM_RS43935 PF00012 Hsp70 protein RAM_RS43940 PF13744 Helix-turn-helix domain RAM_RS43950 PF07724 AAA domain (Cdc48 subfamily) RAM_RS43950 PF17871 AAA lid domain RAM_RS43950 PF02861 Clp amino terminal domain, pathogenicity island component RAM_RS43950 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_RS43950 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS43970 PF11774 Lsr2 RAM_RS43975 PF00152 tRNA synthetases class II (D, K and N) RAM_RS43975 PF01336 OB-fold nucleic acid binding domain RAM_RS43980 PF08241 Methyltransferase domain RAM_RS43985 PF03309 Type III pantothenate kinase RAM_RS43990 PF02261 Aspartate decarboxylase RAM_RS43995 PF02569 Pantoate-beta-alanine ligase RAM_RS44020 PF13411 MerR HTH family regulatory protein RAM_RS44025 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RAM_RS44030 PF02152 Dihydroneopterin aldolase RAM_RS44035 PF00809 Pterin binding enzyme RAM_RS44040 PF01227 GTP cyclohydrolase I RAM_RS44045 PF17862 AAA+ lid domain RAM_RS44045 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS44045 PF01434 Peptidase family M41 RAM_RS44070 PF00156 Phosphoribosyl transferase domain RAM_RS44075 PF01171 PP-loop family RAM_RS44075 PF09179 TilS substrate binding domain RAM_RS44085 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RAM_RS44090 PF00719 Inorganic pyrophosphatase RAM_RS44095 PF07690 Major Facilitator Superfamily RAM_RS44100 PF00464 Serine hydroxymethyltransferase RAM_RS44105 PF00298 Ribosomal protein L11, RNA binding domain RAM_RS44105 PF03946 Ribosomal protein L11, N-terminal domain RAM_RS44110 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_RS44115 PF00246 Zinc carboxypeptidase RAM_RS44130 PF07110 EthD domain RAM_RS44190 PF00392 Bacterial regulatory proteins, gntR family RAM_RS44190 PF07702 UTRA domain RAM_RS44205 PF09397 Ftsk gamma domain RAM_RS44205 PF17854 FtsK alpha domain RAM_RS44205 PF01580 FtsK/SpoIIIE family RAM_RS44205 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RAM_RS44230 PF00589 Phage integrase family RAM_RS44250 PF12169 DNA polymerase III subunits gamma and tau domain III RAM_RS44255 PF02223 Thymidylate kinase RAM_RS44285 PF01751 Toprim domain RAM_RS44285 PF13368 Topoisomerase C-terminal repeat RAM_RS44285 PF01131 DNA topoisomerase RAM_RS44305 PF03030 Inorganic H+ pyrophosphatase RAM_RS44310 PF00270 DEAD/DEAH box helicase RAM_RS44310 PF00271 Helicase conserved C-terminal domain RAM_RS44310 PF09369 Domain of unknown function (DUF1998) RAM_RS44340 PF00437 Type II/IV secretion system protein RAM_RS44355 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_RS44355 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_RS44360 PF07075 Protein of unknown function (DUF1343) RAM_RS44365 PF00144 Beta-lactamase RAM_RS44370 PF01380 SIS domain RAM_RS44370 PF01418 Helix-turn-helix domain, rpiR family RAM_RS44375 PF01380 SIS domain RAM_RS44380 PF03824 High-affinity nickel-transport protein RAM_RS44390 PF00156 Phosphoribosyl transferase domain RAM_RS44400 PF13193 AMP-binding enzyme C-terminal domain RAM_RS44400 PF16177 Acetyl-coenzyme A synthetase N-terminus RAM_RS44400 PF00501 AMP-binding enzyme RAM_RS44420 PF00854 POT family RAM_RS44425 PF06965 Na+/H+ antiporter 1 RAM_RS44435 PF00561 alpha/beta hydrolase fold RAM_RS44440 PF01494 FAD binding domain RAM_RS44450 PF02674 Colicin V production protein RAM_RS44460 PF08534 Redoxin RAM_RS44465 PF00633 Helix-hairpin-helix motif RAM_RS44465 PF10576 Iron-sulfur binding domain of endonuclease III RAM_RS44465 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_RS44475 PF13545 Crp-like helix-turn-helix domain RAM_RS44475 PF00027 Cyclic nucleotide-binding domain RAM_RS44510 PF00135 Carboxylesterase family RAM_RS44520 PF16123 Hydroxyacylglutathione hydrolase C-terminus RAM_RS44520 PF00753 Metallo-beta-lactamase superfamily RAM_RS44555 PF02374 Anion-transporting ATPase RAM_RS44560 PF13614 AAA domain RAM_RS44565 PF02467 Transcription factor WhiB RAM_RS44570 PF17092 Penicillin-binding protein OB-like domain RAM_RS44570 PF00912 Transglycosylase RAM_RS44570 PF00905 Penicillin binding protein transpeptidase domain RAM_RS44575 PF14032 PknH-like extracellular domain RAM_RS44575 PF00069 Protein kinase domain RAM_RS44580 PF00149 Calcineurin-like phosphoesterase RAM_RS44590 PF13847 Methyltransferase domain RAM_RS44595 PF00326 Prolyl oligopeptidase family RAM_RS44625 PF00535 Glycosyl transferase family 2 RAM_RS44630 PF02222 ATP-grasp domain RAM_RS44640 PF16861 Carbamoyltransferase C-terminus RAM_RS44640 PF02543 Carbamoyltransferase N-terminus RAM_RS44655 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_RS44660 PF00210 Ferritin-like domain RAM_RS44665 PF02566 OsmC-like protein RAM_RS44670 PF03358 NADPH-dependent FMN reductase RAM_RS44675 PF07859 alpha/beta hydrolase fold RAM_RS44690 PF07690 Major Facilitator Superfamily RAM_RS44705 PF01139 tRNA-splicing ligase RtcB RAM_RS44720 PF01118 Semialdehyde dehydrogenase, NAD binding domain RAM_RS44720 PF02774 Semialdehyde dehydrogenase, dimerisation domain RAM_RS44725 PF00696 Amino acid kinase family RAM_RS44725 PF01842 ACT domain RAM_RS44725 PF13840 ACT domain RAM_RS44740 PF00682 HMGL-like RAM_RS44740 PF08502 LeuA allosteric (dimerisation) domain RAM_RS44770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_RS44770 PF03466 LysR substrate binding domain RAM_RS44775 PF00892 EamA-like transporter family RAM_RS44780 PF09335 SNARE associated Golgi protein RAM_RS44790 PF03795 YCII-related domain RAM_RS44795 PF08281 Sigma-70, region 4 RAM_RS44795 PF04542 Sigma-70 region 2 RAM_RS44800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS44800 PF00005 ABC transporter RAM_RS44805 PF00005 ABC transporter RAM_RS44805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_RS44810 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS44810 PF12911 N-terminal TM domain of oligopeptide transport permease C RAM_RS44815 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS44820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_RS44830 PF00535 Glycosyl transferase family 2 RAM_RS44850 PF00535 Glycosyl transferase family 2 RAM_RS44860 PF13457 GW (Gly-Tryp) dipeptide domain RAM_RS44860 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RAM_RS44865 PF13662 Toprim domain RAM_RS44865 PF02132 RecR protein RAM_RS44870 PF02575 YbaB/EbfC DNA-binding family RAM_RS44880 PF01638 HxlR-like helix-turn-helix RAM_RS44885 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_RS44890 PF00665 Integrase core domain RAM_RS44890 PF13333 Integrase core domain RAM_RS44890 PF13276 HTH-like domain RAM_RS44895 PF01527 Transposase RAM_RS44900 PF12169 DNA polymerase III subunits gamma and tau domain III RAM_RS44935 PF00005 ABC transporter RAM_RS44940 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS44950 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RAM_RS44955 PF00672 HAMP domain RAM_RS44955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS44955 PF00512 His Kinase A (phospho-acceptor) domain RAM_RS44960 PF00486 Transcriptional regulatory protein, C terminal RAM_RS44960 PF00072 Response regulator receiver domain RAM_RS44970 PF05384 Sensor protein DegS RAM_RS44970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS44970 PF07730 Histidine kinase RAM_RS44975 PF00196 Bacterial regulatory proteins, luxR family RAM_RS44975 PF00072 Response regulator receiver domain RAM_RS44990 PF00440 Bacterial regulatory proteins, tetR family RAM_RS44990 PF13305 Tetracyclin repressor-like, C-terminal domain RAM_RS44995 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS44995 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS44995 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RAM_RS45000 PF08310 LGFP repeat RAM_RS45000 PF00756 Putative esterase RAM_RS45015 PF00069 Protein kinase domain RAM_RS45015 PF03793 PASTA domain RAM_RS45045 PF01580 FtsK/SpoIIIE family RAM_RS45080 PF09587 Bacterial capsule synthesis protein PGA_cap RAM_RS45085 PF07858 Limonene-1,2-epoxide hydrolase catalytic domain RAM_RS45090 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RAM_RS45105 PF13460 NAD(P)H-binding RAM_RS45120 PF14437 MafB19-like deaminase RAM_RS45130 PF01546 Peptidase family M20/M25/M40 RAM_RS45130 PF07687 Peptidase dimerisation domain RAM_RS45135 PF04185 Phosphoesterase family RAM_RS45135 PF05506 Domain of unknown function (DUF756) RAM_RS45145 PF03928 Haem-degrading RAM_RS45155 PF02824 TGS domain RAM_RS45155 PF03129 Anticodon binding domain RAM_RS45155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_RS45155 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RAM_RS45160 PF13411 MerR HTH family regulatory protein RAM_RS45160 PF07739 TipAS antibiotic-recognition domain RAM_RS45165 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS45170 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS45175 PF00005 ABC transporter RAM_RS45175 PF08402 TOBE domain RAM_RS45185 PF07729 FCD domain RAM_RS45185 PF00392 Bacterial regulatory proteins, gntR family RAM_RS45190 PF00701 Dihydrodipicolinate synthetase family RAM_RS45205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_RS45205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_RS45215 PF13538 UvrD-like helicase C-terminal domain RAM_RS45245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS45245 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS45255 PF01207 Dihydrouridine synthase (Dus) RAM_RS45260 PF16499 Alpha galactosidase A RAM_RS45260 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_RS45265 PF00331 Glycosyl hydrolase family 10 RAM_RS45265 PF00652 Ricin-type beta-trefoil lectin domain RAM_RS45275 PF07702 UTRA domain RAM_RS45275 PF00392 Bacterial regulatory proteins, gntR family RAM_RS45280 PF03747 ADP-ribosylglycohydrolase RAM_RS45285 PF00294 pfkB family carbohydrate kinase RAM_RS45300 PF00561 alpha/beta hydrolase fold RAM_RS45305 PF00293 NUDIX domain RAM_RS45310 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS45310 PF00072 Response regulator receiver domain RAM_RS45320 PF03816 Cell envelope-related transcriptional attenuator domain RAM_RS45325 PF01895 PhoU domain RAM_RS45330 PF00005 ABC transporter RAM_RS45335 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS45340 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS45345 PF12849 PBP superfamily domain RAM_RS45350 PF00583 Acetyltransferase (GNAT) family RAM_RS45355 PF00486 Transcriptional regulatory protein, C terminal RAM_RS45375 PF00581 Rhodanese-like domain RAM_RS45380 PF07210 Protein of unknown function (DUF1416) RAM_RS45385 PF08768 Domain of unknown function (DUF1794) RAM_RS45390 PF02682 Carboxyltransferase domain, subdomain C and D RAM_RS45395 PF02626 Carboxyltransferase domain, subdomain A and B RAM_RS45435 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_RS45435 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_RS45445 PF00005 ABC transporter RAM_RS45460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS45460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS45475 PF00472 RF-1 domain RAM_RS45480 PF02769 AIR synthase related protein, C-terminal domain RAM_RS45480 PF00586 AIR synthase related protein, N-terminal domain RAM_RS45485 PF00156 Phosphoribosyl transferase domain RAM_RS45520 PF01183 Glycosyl hydrolases family 25 RAM_RS45525 PF01183 Glycosyl hydrolases family 25 RAM_RS45545 PF02769 AIR synthase related protein, C-terminal domain RAM_RS45545 PF00586 AIR synthase related protein, N-terminal domain RAM_RS45545 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RAM_RS45550 PF00664 ABC transporter transmembrane region RAM_RS45550 PF00005 ABC transporter RAM_RS45555 PF00664 ABC transporter transmembrane region RAM_RS45555 PF00005 ABC transporter RAM_RS45565 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase RAM_RS45570 PF00732 GMC oxidoreductase RAM_RS45570 PF05199 GMC oxidoreductase RAM_RS45575 PF00171 Aldehyde dehydrogenase family RAM_RS45590 PF13350 Tyrosine phosphatase family RAM_RS45610 PF01259 SAICAR synthetase RAM_RS45620 PF00005 ABC transporter RAM_RS45625 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS45630 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_RS45635 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_RS45640 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_RS45645 PF10397 Adenylosuccinate lyase C-terminus RAM_RS45645 PF00206 Lyase RAM_RS45650 PF13378 Enolase C-terminal domain-like RAM_RS45650 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_RS45665 PF07729 FCD domain RAM_RS45665 PF00392 Bacterial regulatory proteins, gntR family RAM_RS45685 PF01212 Beta-eliminating lyase RAM_RS45690 PF13419 Haloacid dehalogenase-like hydrolase RAM_RS45705 PF00155 Aminotransferase class I and II RAM_RS45710 PF01464 Transglycosylase SLT domain RAM_RS45740 PF02843 Phosphoribosylglycinamide synthetase, C domain RAM_RS45740 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RAM_RS45740 PF02844 Phosphoribosylglycinamide synthetase, N domain RAM_RS45745 PF03009 Glycerophosphoryl diester phosphodiesterase family RAM_RS45770 PF00294 pfkB family carbohydrate kinase RAM_RS45775 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RAM_RS45775 PF00925 GTP cyclohydrolase II RAM_RS45780 PF07690 Major Facilitator Superfamily RAM_RS45785 PF00999 Sodium/hydrogen exchanger family RAM_RS45790 PF00296 Luciferase-like monooxygenase RAM_RS45800 PF00709 Adenylosuccinate synthetase RAM_RS45815 PF06722 Protein of unknown function (DUF1205) RAM_RS45835 PF00072 Response regulator receiver domain RAM_RS45835 PF00990 Diguanylate cyclase, GGDEF domain RAM_RS45840 PF00440 Bacterial regulatory proteins, tetR family RAM_RS45860 PF01116 Fructose-bisphosphate aldolase class-II RAM_RS45870 PF00248 Aldo/keto reductase family RAM_RS45885 PF00743 Flavin-binding monooxygenase-like RAM_RS45895 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS45915 PF01979 Amidohydrolase family RAM_RS45925 PF09335 SNARE associated Golgi protein RAM_RS45930 PF01850 PIN domain RAM_RS45940 PF02913 FAD linked oxidases, C-terminal domain RAM_RS45940 PF01565 FAD binding domain RAM_RS45945 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_RS45955 PF07690 Major Facilitator Superfamily RAM_RS45965 PF09335 SNARE associated Golgi protein RAM_RS45975 PF03171 2OG-Fe(II) oxygenase superfamily RAM_RS45975 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RAM_RS45985 PF00485 Phosphoribulokinase / Uridine kinase family RAM_RS45990 PF00294 pfkB family carbohydrate kinase RAM_RS45995 PF00005 ABC transporter RAM_RS46000 PF02653 Branched-chain amino acid transport system / permease component RAM_RS46005 PF13407 Periplasmic binding protein domain RAM_RS46010 PF00356 Bacterial regulatory proteins, lacI family RAM_RS46015 PF00356 Bacterial regulatory proteins, lacI family RAM_RS46025 PF01568 Molydopterin dinucleotide binding domain RAM_RS46025 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS46025 PF00384 Molybdopterin oxidoreductase RAM_RS46055 PF04542 Sigma-70 region 2 RAM_RS46055 PF08281 Sigma-70, region 4 RAM_RS46055 PF12680 SnoaL-like domain RAM_RS46060 PF00156 Phosphoribosyl transferase domain RAM_RS46070 PF00005 ABC transporter RAM_RS46075 PF00106 short chain dehydrogenase RAM_RS46090 PF00004 ATPase family associated with various cellular activities (AAA) RAM_RS46090 PF02861 Clp amino terminal domain, pathogenicity island component RAM_RS46090 PF17871 AAA lid domain RAM_RS46090 PF07724 AAA domain (Cdc48 subfamily) RAM_RS46090 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_RS46105 PF00970 Oxidoreductase FAD-binding domain RAM_RS46105 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS46105 PF00175 Oxidoreductase NAD-binding domain RAM_RS46110 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_RS46110 PF00175 Oxidoreductase NAD-binding domain RAM_RS46110 PF00970 Oxidoreductase FAD-binding domain RAM_RS46115 PF01738 Dienelactone hydrolase family RAM_RS46120 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RAM_RS46130 PF13411 MerR HTH family regulatory protein RAM_RS46135 PF00684 DnaJ central domain RAM_RS46135 PF00226 DnaJ domain RAM_RS46135 PF01556 DnaJ C terminal domain RAM_RS46140 PF01025 GrpE RAM_RS46145 PF00012 Hsp70 protein RAM_RS46155 PF01161 Phosphatidylethanolamine-binding protein RAM_RS46180 PF13183 4Fe-4S dicluster domain RAM_RS46180 PF02665 Nitrate reductase gamma subunit RAM_RS46180 PF02754 Cysteine-rich domain RAM_RS46195 PF00188 Cysteine-rich secretory protein family RAM_RS46210 PF01494 FAD binding domain RAM_RS46215 PF00692 dUTPase RAM_RS46235 PF04542 Sigma-70 region 2 RAM_RS46235 PF08281 Sigma-70, region 4 RAM_RS46240 PF03795 YCII-related domain RAM_RS46245 PF00067 Cytochrome P450 RAM_RS46270 PF00149 Calcineurin-like phosphoesterase RAM_RS46275 PF00561 alpha/beta hydrolase fold RAM_RS46275 PF00364 Biotin-requiring enzyme RAM_RS46280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS46280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS46290 PF03167 Uracil DNA glycosylase superfamily RAM_RS46295 PF00072 Response regulator receiver domain RAM_RS46295 PF00196 Bacterial regulatory proteins, luxR family RAM_RS46300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_RS46300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_RS46300 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_RS46300 PF12806 Acetyl-CoA dehydrogenase C-terminal like RAM_RS46310 PF07690 Major Facilitator Superfamily RAM_RS46330 PF00166 Chaperonin 10 Kd subunit RAM_RS46355 PF00005 ABC transporter RAM_RS46360 PF00528 Binding-protein-dependent transport system inner membrane component RAM_RS46365 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_RS46370 PF04174 A circularly permuted ATPgrasp RAM_RS46380 PF08379 Bacterial transglutaminase-like N-terminal region RAM_RS46380 PF01841 Transglutaminase-like superfamily RAM_RS46390 PF00440 Bacterial regulatory proteins, tetR family RAM_RS46395 PF01546 Peptidase family M20/M25/M40 RAM_RS46395 PF07687 Peptidase dimerisation domain RAM_RS46400 PF00676 Dehydrogenase E1 component RAM_RS46405 PF02780 Transketolase, C-terminal domain RAM_RS46405 PF02779 Transketolase, pyrimidine binding domain RAM_RS46410 PF00364 Biotin-requiring enzyme RAM_RS46410 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_RS46410 PF02817 e3 binding domain RAM_RS46420 PF00005 ABC transporter RAM_RS46435 PF04186 FxsA cytoplasmic membrane protein RAM_RS46440 PF03852 DNA mismatch endonuclease Vsr RAM_RS46445 PF00145 C-5 cytosine-specific DNA methylase RAM_RS46475 PF08362 YcdC-like protein, C-terminal region RAM_RS46475 PF00440 Bacterial regulatory proteins, tetR family RAM_RS46480 PF01575 MaoC like domain RAM_RS46490 PF02803 Thiolase, C-terminal domain RAM_RS46490 PF00108 Thiolase, N-terminal domain RAM_RS46530 PF00474 Sodium:solute symporter family RAM_RS46540 PF00561 alpha/beta hydrolase fold RAM_RS46565 PF00005 ABC transporter RAM_RS46575 PF00296 Luciferase-like monooxygenase RAM_RS46580 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain RAM_RS46580 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain RAM_RS46595 PF01025 GrpE RAM_RS46605 PF00350 Dynamin family RAM_RS46610 PF07730 Histidine kinase RAM_RS46615 PF00196 Bacterial regulatory proteins, luxR family RAM_RS46615 PF00072 Response regulator receiver domain RAM_RS46630 PF00005 ABC transporter RAM_RS46640 PF00005 ABC transporter RAM_RS46655 PF02390 Putative methyltransferase RAM_RS46665 PF00005 ABC transporter RAM_RS46670 PF05384 Sensor protein DegS RAM_RS46670 PF07730 Histidine kinase RAM_RS46670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_RS46675 PF00072 Response regulator receiver domain RAM_RS46675 PF00196 Bacterial regulatory proteins, luxR family RAM_RS46690 PF01979 Amidohydrolase family RAM_RS46695 PF00106 short chain dehydrogenase RAM_RS46700 PF17961 Bacterial Ig domain RAM_RS46700 PF00746 LPXTG cell wall anchor motif RAM_RS46700 PF17210 SdrD B-like domain RAM_RS46700 PF04650 YSIRK type signal peptide RAM_RS46710 PF07690 Major Facilitator Superfamily RAM_RS46715 PF01047 MarR family RAM_RS46720 PF13419 Haloacid dehalogenase-like hydrolase RAM_RS46730 PF04542 Sigma-70 region 2 RAM_RS46730 PF08281 Sigma-70, region 4 RAM_RS46735 PF01658 Myo-inositol-1-phosphate synthase RAM_RS46740 PF03551 Transcriptional regulator PadR-like family RAM_RS46745 PF17249 Family of unknown function (DUF5318) RAM_RS46750 PF00905 Penicillin binding protein transpeptidase domain RAM_RS46750 PF00912 Transglycosylase RAM_RS46755 PF00912 Transglycosylase RAM_RS46755 PF00905 Penicillin binding protein transpeptidase domain RAM_RS46760 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_RS46760 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_RS46765 PF01325 Iron dependent repressor, N-terminal DNA binding domain RAM_RS46765 PF00480 ROK family RAM_RS46775 PF01261 Xylose isomerase-like TIM barrel RAM_RS46795 PF01250 Ribosomal protein S6 RAM_RS46800 PF00436 Single-strand binding protein family RAM_RS46805 PF01084 Ribosomal protein S18 RAM_RS46810 PF03948 Ribosomal protein L9, C-terminal domain RAM_RS46810 PF01281 Ribosomal protein L9, N-terminal domain RAM_RS46835 PF00772 DnaB-like helicase N terminal domain RAM_RS46835 PF03796 DnaB-like helicase C terminal domain RAM_RS46835 PF14528 LAGLIDADG-like domain RAM_RS46835 PF00772 DnaB-like helicase N terminal domain RAM_RS46835 PF14528 LAGLIDADG-like domain RAM_RS46835 PF03796 DnaB-like helicase C terminal domain RAM_RS46850 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RAM_RS46865 PF01594 AI-2E family transporter RAM_RS46875 PF00196 Bacterial regulatory proteins, luxR family RAM_RS46875 PF00072 Response regulator receiver domain RAM_RS46890 PF07690 Major Facilitator Superfamily RAM_RS46895 PF02896 PEP-utilising enzyme, TIM barrel domain RAM_RS46895 PF05524 PEP-utilising enzyme, N-terminal RAM_RS46895 PF00391 PEP-utilising enzyme, mobile domain RAM_RS46905 PF00294 pfkB family carbohydrate kinase RAM_RS46955 PF00440 Bacterial regulatory proteins, tetR family RAM_RS46955 PF13305 Tetracyclin repressor-like, C-terminal domain RAM_RS46965 PF09334 tRNA synthetases class I (M) RAM_RS46965 PF08264 Anticodon-binding domain of tRNA RAM_RS46965 PF13603 Leucyl-tRNA synthetase, Domain 2 RAM_RS46980 PF02622 Uncharacterized ACR, COG1678 RAM_RS46985 PF07690 Major Facilitator Superfamily RAM_RS47020 PF03747 ADP-ribosylglycohydrolase RAM_RS47045 PF12627 Probable RNA and SrmB- binding site of polymerase A RAM_RS47045 PF13735 tRNA nucleotidyltransferase domain 2 putative RAM_RS47045 PF01743 Poly A polymerase head domain RAM_RS47050 PF00293 NUDIX domain RAM_RS47065 PF03023 Lipid II flippase MurJ RAM_RS47075 PF04542 Sigma-70 region 2 RAM_RS47075 PF08281 Sigma-70, region 4 RAM_RS47085 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS47090 PF00085 Thioredoxin RAM_RS47090 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_RS47095 PF01520 N-acetylmuramoyl-L-alanine amidase RAM_RS47095 PF01471 Putative peptidoglycan binding domain RAM_RS47105 PF00155 Aminotransferase class I and II RAM_RS47110 PF01820 D-ala D-ala ligase N-terminus RAM_RS47110 PF07478 D-ala D-ala ligase C-terminus RAM_RS47115 PF02195 ParB-like nuclease domain RAM_RS47115 PF17762 HTH domain found in ParB protein RAM_RS47120 PF13614 AAA domain RAM_RS47125 PF02527 rRNA small subunit methyltransferase G RAM_RS47140 PF02096 60Kd inner membrane protein RAM_RS47145 PF01809 Putative membrane protein insertion efficiency factor RAM_RS47150 PF00468 Ribosomal protein L34 RAM_RS47170 PF01032 FecCD transport family RAM_RS47180 PF03259 Roadblock/LC7 domain