RAM_RS00005 SM00382 ATPases associated with a variety of cellular activities RAM_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain RAM_RS00010 SM00480 DNA polymerase III beta subunit RAM_RS00015 SM01350 RAM_RS00015 RAM_RS00020 SM00382 ATPases associated with a variety of cellular activities RAM_RS00030 SM00387 Histidine kinase-like ATPases RAM_RS00030 SM00433 TopoisomeraseII RAM_RS00035 SM00434 DNA Topoisomerase IV RAM_RS00095 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS00125 SM00382 ATPases associated with a variety of cellular activities RAM_RS00135 SM00862 Transcriptional regulatory protein, C terminal RAM_RS00135 SM01043 Bacterial transcriptional activator domain RAM_RS00215 SM00382 ATPases associated with a variety of cellular activities RAM_RS00225 SM00421 helix_turn_helix, Lux Regulon RAM_RS00225 SM00448 cheY-homologous receiver domain RAM_RS00240 SM00382 ATPases associated with a variety of cellular activities RAM_RS00255 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS00255 SM00740 RAM_RS00255 RAM_RS00260 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS00275 SM00331 Sigma factor PP2C-like phosphatases RAM_RS00275 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RAM_RS00280 SM00240 Forkhead associated domain RAM_RS00285 SM00240 Forkhead associated domain RAM_RS00295 SM00020 Trypsin-like serine protease RAM_RS00300 SM00020 Trypsin-like serine protease RAM_RS00335 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS00335 SM00895 RAM_RS00335 RAM_RS00355 SM00382 ATPases associated with a variety of cellular activities RAM_RS00360 SM00382 ATPases associated with a variety of cellular activities RAM_RS00385 SM00421 helix_turn_helix, Lux Regulon RAM_RS00415 SM01400 RAM_RS00415 RAM_RS00455 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS00490 SM00382 ATPases associated with a variety of cellular activities RAM_RS00525 SM00822 RAM_RS00525 RAM_RS00530 SM00984 UDP binding domain RAM_RS00565 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS00575 SM00421 helix_turn_helix, Lux Regulon RAM_RS00575 SM00448 cheY-homologous receiver domain RAM_RS00660 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_RS00660 SM01232 RAM_RS00660 RAM_RS00665 SM00387 Histidine kinase-like ATPases RAM_RS00675 SM00606 Cellulose Binding Domain Type IV RAM_RS00680 SM00448 cheY-homologous receiver domain RAM_RS00680 SM00850 LytTr DNA-binding domain RAM_RS00695 SM00450 Rhodanese Homology Domain RAM_RS00790 SM00327 von Willebrand factor (vWF) type A domain RAM_RS00805 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS00820 SM00245 tail specific protease RAM_RS00835 SM00382 ATPases associated with a variety of cellular activities RAM_RS00845 SM00421 helix_turn_helix, Lux Regulon RAM_RS00845 SM00448 cheY-homologous receiver domain RAM_RS00865 SM00894 Excalibur calcium-binding domain RAM_RS00870 SM00479 RAM_RS00870 RAM_RS00905 SM00506 Appr-1"-p processing enzyme RAM_RS00915 SM00855 Phosphoglycerate mutase family RAM_RS00995 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS01000 SM00028 Tetratricopeptide repeats RAM_RS01000 SM00862 Transcriptional regulatory protein, C terminal RAM_RS01000 SM01043 Bacterial transcriptional activator domain RAM_RS01060 SM00822 RAM_RS01060 RAM_RS01105 SM00563 Phosphate acyltransferases RAM_RS01130 SM00014 Acid phosphatase homologues RAM_RS01200 SM00382 ATPases associated with a variety of cellular activities RAM_RS01220 SM00829 Enoylreductase RAM_RS01235 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS01275 SM00822 RAM_RS01275 RAM_RS01285 SM00448 cheY-homologous receiver domain RAM_RS01290 SM00387 Histidine kinase-like ATPases RAM_RS01295 SM00382 ATPases associated with a variety of cellular activities RAM_RS01320 SM00421 helix_turn_helix, Lux Regulon RAM_RS01335 SM00344 helix_turn_helix ASNC type RAM_RS01345 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain RAM_RS01345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS01355 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS01355 SM00895 RAM_RS01355 RAM_RS01405 SM00636 RAM_RS01405 RAM_RS01405 SM00637 RAM_RS01405 RAM_RS01410 SM00637 RAM_RS01410 RAM_RS01425 SM00671 Sel1-like repeats. RAM_RS01520 SM00382 ATPases associated with a variety of cellular activities RAM_RS01600 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS01630 SM00998 Adenylosuccinate lyase C-terminus RAM_RS01695 SM00020 Trypsin-like serine protease RAM_RS01710 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS01710 SM01260 RAM_RS01710 RAM_RS01730 SM00357 Cold shock protein domain RAM_RS01760 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS01765 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS01830 SM00943 Bifunctional DNA primase/polymerase, N-terminal RAM_RS01955 SM00052 Putative diguanylate phosphodiesterase RAM_RS01955 SM00091 PAS domain RAM_RS01955 SM00267 diguanylate cyclase RAM_RS01995 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS02015 SM01350 RAM_RS02015 RAM_RS02020 SM00849 Metallo-beta-lactamase superfamily RAM_RS02025 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS02135 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS02180 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS02250 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS02260 SM00829 Enoylreductase RAM_RS02275 SM00829 Enoylreductase RAM_RS02335 SM00855 Phosphoglycerate mutase family RAM_RS02340 SM00421 helix_turn_helix, Lux Regulon RAM_RS02350 SM00387 Histidine kinase-like ATPases RAM_RS02350 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS02355 SM00448 cheY-homologous receiver domain RAM_RS02355 SM00862 Transcriptional regulatory protein, C terminal RAM_RS02395 SM00563 Phosphate acyltransferases RAM_RS02400 SM00387 Histidine kinase-like ATPases RAM_RS02405 SM00421 helix_turn_helix, Lux Regulon RAM_RS02405 SM00448 cheY-homologous receiver domain RAM_RS02445 SM00881 CoA binding domain RAM_RS02470 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS02475 SM01004 Delta-aminolevulinic acid dehydratase RAM_RS02500 SM00382 ATPases associated with a variety of cellular activities RAM_RS02525 SM00855 Phosphoglycerate mutase family RAM_RS02565 SM00344 helix_turn_helix ASNC type RAM_RS02625 SM00862 Transcriptional regulatory protein, C terminal RAM_RS02625 SM01043 Bacterial transcriptional activator domain RAM_RS02670 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_RS02675 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS02675 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RAM_RS02765 SM00344 helix_turn_helix ASNC type RAM_RS02785 SM00984 UDP binding domain RAM_RS02820 SM00710 Parallel beta-helix repeats RAM_RS02835 SM00014 Acid phosphatase homologues RAM_RS02845 SM00710 Parallel beta-helix repeats RAM_RS02965 SM00382 ATPases associated with a variety of cellular activities RAM_RS02965 SM00464 Found in ATP-dependent protease La (LON) RAM_RS02980 SM00052 Putative diguanylate phosphodiesterase RAM_RS02980 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS02980 SM00267 diguanylate cyclase RAM_RS03020 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS03040 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RAM_RS03045 SM00649 Ribosomal protein L11/L12 RAM_RS03075 SM00382 ATPases associated with a variety of cellular activities RAM_RS03155 SM00822 RAM_RS03155 RAM_RS03155 SM00823 Phosphopantetheine attachment site RAM_RS03155 SM00825 Beta-ketoacyl synthase RAM_RS03155 SM00826 RAM_RS03155 RAM_RS03155 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS03155 SM01294 RAM_RS03155 RAM_RS03160 SM00822 RAM_RS03160 RAM_RS03160 SM00823 Phosphopantetheine attachment site RAM_RS03160 SM00825 Beta-ketoacyl synthase RAM_RS03160 SM00826 RAM_RS03160 RAM_RS03160 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS03160 SM01294 RAM_RS03160 RAM_RS03165 SM00822 RAM_RS03165 RAM_RS03165 SM00823 Phosphopantetheine attachment site RAM_RS03165 SM00825 Beta-ketoacyl synthase RAM_RS03165 SM00826 RAM_RS03165 RAM_RS03165 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS03165 SM01294 RAM_RS03165 RAM_RS03170 SM00822 RAM_RS03170 RAM_RS03170 SM00823 Phosphopantetheine attachment site RAM_RS03170 SM00825 Beta-ketoacyl synthase RAM_RS03170 SM00826 RAM_RS03170 RAM_RS03170 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS03170 SM01294 RAM_RS03170 RAM_RS03175 SM00822 RAM_RS03175 RAM_RS03175 SM00823 Phosphopantetheine attachment site RAM_RS03175 SM00825 Beta-ketoacyl synthase RAM_RS03175 SM00826 RAM_RS03175 RAM_RS03175 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS03175 SM01294 RAM_RS03175 RAM_RS03310 SM00824 Thioesterase RAM_RS03320 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. RAM_RS03330 SM00861 Transketolase, pyrimidine binding domain RAM_RS03345 SM00421 helix_turn_helix, Lux Regulon RAM_RS03355 SM00663 RNA polymerase I subunit A N-terminus RAM_RS03370 SM00344 helix_turn_helix ASNC type RAM_RS03385 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_RS03440 SM00838 Elongation factor G C-terminus RAM_RS03440 SM00889 Elongation factor G, domain IV RAM_RS03450 SM01403 RAM_RS03450 RAM_RS03470 SM01382 RAM_RS03470 RAM_RS03470 SM01383 RAM_RS03470 RAM_RS03485 SM00322 K homology RNA-binding domain RAM_RS03505 SM01374 RAM_RS03505 RAM_RS03510 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RAM_RS03605 SM00363 S4 RNA-binding domain RAM_RS03605 SM01390 RAM_RS03605 RAM_RS03610 SM00662 RNA polymerases D RAM_RS03760 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_RS03760 SM01134 RAM_RS03760 RAM_RS03770 SM00382 ATPases associated with a variety of cellular activities RAM_RS03775 SM01005 Alanine racemase, C-terminal domain RAM_RS03845 SM00644 RAM_RS03845 RAM_RS03855 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS03860 SM00226 Low molecular weight phosphatase family RAM_RS03870 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS03880 SM00883 Chaperonin 10 Kd subunit RAM_RS03895 SM00422 helix_turn_helix, mercury resistance RAM_RS03905 SM00421 helix_turn_helix, Lux Regulon RAM_RS03905 SM00448 cheY-homologous receiver domain RAM_RS03925 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_RS03925 SM01240 RAM_RS03925 RAM_RS03935 SM01240 RAM_RS03935 RAM_RS04005 SM00387 Histidine kinase-like ATPases RAM_RS04010 SM00421 helix_turn_helix, Lux Regulon RAM_RS04010 SM00448 cheY-homologous receiver domain RAM_RS04030 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS04050 SM00830 Chorismate mutase type II RAM_RS04085 SM00881 CoA binding domain RAM_RS04105 SM00798 AICARFT/IMPCHase bienzyme RAM_RS04105 SM00851 MGS-like domain RAM_RS04145 SM00481 DNA polymerase alpha chain like domain RAM_RS04180 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS04205 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS04235 SM01329 RAM_RS04235 RAM_RS04255 SM00849 Metallo-beta-lactamase superfamily RAM_RS04335 SM00776 RAM_RS04335 RAM_RS04350 SM00382 ATPases associated with a variety of cellular activities RAM_RS04370 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RAM_RS04395 SM00487 DEAD-like helicases superfamily RAM_RS04395 SM00490 helicase superfamily c-terminal domain RAM_RS04415 SM00829 Enoylreductase RAM_RS04475 SM01133 RAM_RS04475 RAM_RS04515 SM00422 helix_turn_helix, mercury resistance RAM_RS04545 SM00448 cheY-homologous receiver domain RAM_RS04545 SM00862 Transcriptional regulatory protein, C terminal RAM_RS04550 SM00387 Histidine kinase-like ATPases RAM_RS04550 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS04620 SM00422 helix_turn_helix, mercury resistance RAM_RS04625 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS04735 SM00878 Biotin carboxylase C-terminal domain RAM_RS04785 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS04805 SM00421 helix_turn_helix, Lux Regulon RAM_RS04805 SM00448 cheY-homologous receiver domain RAM_RS04820 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS04850 SM00822 RAM_RS04850 RAM_RS04855 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS04860 SM00460 Transglutaminase/protease-like homologues RAM_RS04920 SM00421 helix_turn_helix, Lux Regulon RAM_RS04920 SM00448 cheY-homologous receiver domain RAM_RS04965 SM00448 cheY-homologous receiver domain RAM_RS04965 SM00862 Transcriptional regulatory protein, C terminal RAM_RS04970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS04970 SM00387 Histidine kinase-like ATPases RAM_RS04975 SM00421 helix_turn_helix, Lux Regulon RAM_RS04980 SM00421 helix_turn_helix, Lux Regulon RAM_RS04980 SM00448 cheY-homologous receiver domain RAM_RS05030 SM01001 AIR carboxylase RAM_RS05160 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS05215 SM00880 RAM_RS05215 RAM_RS05240 SM00636 RAM_RS05240 RAM_RS05255 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS05260 SM00495 Chitin-binding domain type 3 RAM_RS05265 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS05305 SM00563 Phosphate acyltransferases RAM_RS05315 SM00382 ATPases associated with a variety of cellular activities RAM_RS05320 SM00382 ATPases associated with a variety of cellular activities RAM_RS05400 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_RS05420 SM00924 MgtE intracellular N domain RAM_RS05430 SM00244 prohibitin homologues RAM_RS05470 SM00382 ATPases associated with a variety of cellular activities RAM_RS05495 SM00421 helix_turn_helix, Lux Regulon RAM_RS05495 SM00448 cheY-homologous receiver domain RAM_RS05560 SM00481 DNA polymerase alpha chain like domain RAM_RS05590 SM00487 DEAD-like helicases superfamily RAM_RS05590 SM00490 helicase superfamily c-terminal domain RAM_RS05640 SM00450 Rhodanese Homology Domain RAM_RS05650 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS05675 SM00862 Transcriptional regulatory protein, C terminal RAM_RS05845 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS05865 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS05865 SM00895 RAM_RS05865 RAM_RS05890 SM00226 Low molecular weight phosphatase family RAM_RS05900 SM00830 Chorismate mutase type II RAM_RS05915 SM00855 Phosphoglycerate mutase family RAM_RS05930 SM00421 helix_turn_helix, Lux Regulon RAM_RS06005 SM00955 RAM_RS06005 RAM_RS06040 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS06040 SM00895 RAM_RS06040 RAM_RS06050 SM00382 ATPases associated with a variety of cellular activities RAM_RS06120 SM00957 SecA DEAD-like domain RAM_RS06120 SM00958 SecA preprotein cross-linking domain RAM_RS06140 SM01230 RAM_RS06140 RAM_RS06165 SM00344 helix_turn_helix ASNC type RAM_RS06170 SM00450 Rhodanese Homology Domain RAM_RS06195 SM01230 RAM_RS06195 RAM_RS06215 SM00341 Helicase and RNase D C-terminal RAM_RS06275 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_RS06315 SM00937 RAM_RS06315 RAM_RS06320 SM00382 ATPases associated with a variety of cellular activities RAM_RS06355 SM00421 helix_turn_helix, Lux Regulon RAM_RS06355 SM00448 cheY-homologous receiver domain RAM_RS06370 SM00267 diguanylate cyclase RAM_RS06380 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS06450 SM00421 helix_turn_helix, Lux Regulon RAM_RS06450 SM00448 cheY-homologous receiver domain RAM_RS06465 SM00028 Tetratricopeptide repeats RAM_RS06475 SM00382 ATPases associated with a variety of cellular activities RAM_RS06480 SM00487 DEAD-like helicases superfamily RAM_RS06480 SM00490 helicase superfamily c-terminal domain RAM_RS06480 SM00847 Helicase associated domain (HA2) Add an annotation RAM_RS06485 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS06525 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS06540 SM00458 Ricin-type beta-trefoil RAM_RS06545 SM00434 DNA Topoisomerase IV RAM_RS06550 SM00387 Histidine kinase-like ATPases RAM_RS06550 SM00433 TopoisomeraseII RAM_RS06590 SM00560 LamG-like jellyroll fold domain RAM_RS06605 SM00382 ATPases associated with a variety of cellular activities RAM_RS06615 SM00354 helix_turn _helix lactose operon repressor RAM_RS06650 SM00382 ATPases associated with a variety of cellular activities RAM_RS06705 SM00458 Ricin-type beta-trefoil RAM_RS06745 SM00060 Fibronectin type 3 domain RAM_RS06790 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_RS06845 SM00382 ATPases associated with a variety of cellular activities RAM_RS06895 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS06900 SM00849 Metallo-beta-lactamase superfamily RAM_RS06925 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS06925 SM00866 RAM_RS06925 RAM_RS06930 SM00028 Tetratricopeptide repeats RAM_RS06930 SM00862 Transcriptional regulatory protein, C terminal RAM_RS06930 SM01043 Bacterial transcriptional activator domain RAM_RS06955 SM00382 ATPases associated with a variety of cellular activities RAM_RS06960 SM00382 ATPases associated with a variety of cellular activities RAM_RS07000 SM00421 helix_turn_helix, Lux Regulon RAM_RS07000 SM00448 cheY-homologous receiver domain RAM_RS07005 SM00387 Histidine kinase-like ATPases RAM_RS07010 SM00382 ATPases associated with a variety of cellular activities RAM_RS07030 SM00382 ATPases associated with a variety of cellular activities RAM_RS07095 SM00458 Ricin-type beta-trefoil RAM_RS07150 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS07195 SM00829 Enoylreductase RAM_RS07205 SM00829 Enoylreductase RAM_RS07210 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS07220 SM00387 Histidine kinase-like ATPases RAM_RS07225 SM00960 Roadblock/LC7 domain RAM_RS07260 SM00822 RAM_RS07260 RAM_RS07345 SM00028 Tetratricopeptide repeats RAM_RS07350 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS07360 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS07370 SM00829 Enoylreductase RAM_RS07395 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS07400 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS07405 SM00421 helix_turn_helix, Lux Regulon RAM_RS07405 SM00448 cheY-homologous receiver domain RAM_RS07425 SM00458 Ricin-type beta-trefoil RAM_RS07440 SM00448 cheY-homologous receiver domain RAM_RS07445 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_RS07445 SM00387 Histidine kinase-like ATPases RAM_RS07465 SM00327 von Willebrand factor (vWF) type A domain RAM_RS07510 SM00060 Fibronectin type 3 domain RAM_RS07515 SM00421 helix_turn_helix, Lux Regulon RAM_RS07580 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS07590 SM00382 ATPases associated with a variety of cellular activities RAM_RS07615 SM00382 ATPases associated with a variety of cellular activities RAM_RS07645 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS07645 SM00895 RAM_RS07645 RAM_RS07655 SM00382 ATPases associated with a variety of cellular activities RAM_RS07665 SM00854 Bacterial capsule synthesis protein PGA_cap RAM_RS07675 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_RS07680 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_RS07740 SM00812 Alpha-L-fucosidase RAM_RS07755 SM00944 Pro-kumamolisin, activation domain RAM_RS07760 SM00387 Histidine kinase-like ATPases RAM_RS07790 SM00382 ATPases associated with a variety of cellular activities RAM_RS07810 SM00487 DEAD-like helicases superfamily RAM_RS07810 SM00490 helicase superfamily c-terminal domain RAM_RS07835 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_RS07835 SM00732 Likely ribonuclease with RNase H fold. RAM_RS07840 SM00636 RAM_RS07840 RAM_RS07860 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS07930 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS07950 SM00829 Enoylreductase RAM_RS07975 SM00382 ATPases associated with a variety of cellular activities RAM_RS07985 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS08020 SM00448 cheY-homologous receiver domain RAM_RS08020 SM00850 LytTr DNA-binding domain RAM_RS08025 SM00387 Histidine kinase-like ATPases RAM_RS08045 SM00382 ATPases associated with a variety of cellular activities RAM_RS08055 SM00354 helix_turn _helix lactose operon repressor RAM_RS08075 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS08130 SM00450 Rhodanese Homology Domain RAM_RS08140 SM00382 ATPases associated with a variety of cellular activities RAM_RS08180 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS08200 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS08210 SM00849 Metallo-beta-lactamase superfamily RAM_RS08265 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS08340 SM00893 Electron transfer flavoprotein domain RAM_RS08345 SM00893 Electron transfer flavoprotein domain RAM_RS08355 SM00563 Phosphate acyltransferases RAM_RS08360 SM00829 Enoylreductase RAM_RS08365 SM00421 helix_turn_helix, Lux Regulon RAM_RS08400 SM00849 Metallo-beta-lactamase superfamily RAM_RS08420 SM00292 breast cancer carboxy-terminal domain RAM_RS08420 SM00532 Ligase N family RAM_RS08445 SM00845 GatB domain RAM_RS08525 SM00248 ankyrin repeats RAM_RS08555 SM01329 RAM_RS08555 RAM_RS08560 SM00917 LeuA allosteric (dimerisation) domain RAM_RS08590 SM00411 bacterial (prokaryotic) histone like domain RAM_RS08595 SM00028 Tetratricopeptide repeats RAM_RS08650 SM00411 bacterial (prokaryotic) histone like domain RAM_RS08675 SM01217 RAM_RS08675 RAM_RS08690 SM00849 Metallo-beta-lactamase superfamily RAM_RS08695 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS08710 SM00411 bacterial (prokaryotic) histone like domain RAM_RS08715 SM00028 Tetratricopeptide repeats RAM_RS08715 SM00862 Transcriptional regulatory protein, C terminal RAM_RS08715 SM01043 Bacterial transcriptional activator domain RAM_RS08720 SM00855 Phosphoglycerate mutase family RAM_RS08735 SM00563 Phosphate acyltransferases RAM_RS08750 SM00870 RAM_RS08750 RAM_RS08765 SM00900 RAM_RS08765 RAM_RS08775 SM00448 cheY-homologous receiver domain RAM_RS08775 SM00862 Transcriptional regulatory protein, C terminal RAM_RS08780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS08780 SM00387 Histidine kinase-like ATPases RAM_RS08780 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS08790 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS08830 SM00986 Uracil DNA glycosylase superfamily RAM_RS08830 SM00987 UreE urease accessory protein, C-terminal domain RAM_RS08845 SM01120 RAM_RS08845 RAM_RS08845 SM01121 RAM_RS08845 RAM_RS08850 SM00487 DEAD-like helicases superfamily RAM_RS08850 SM00490 helicase superfamily c-terminal domain RAM_RS08890 SM00878 Biotin carboxylase C-terminal domain RAM_RS08900 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS09015 SM00320 WD40 repeats RAM_RS09065 SM00358 Double-stranded RNA binding motif RAM_RS09065 SM00535 Ribonuclease III family RAM_RS09075 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_RS09075 SM01232 RAM_RS09075 RAM_RS09120 SM01230 RAM_RS09120 RAM_RS09170 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_RS09195 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS09195 SM00895 RAM_RS09195 RAM_RS09215 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS09230 SM00822 RAM_RS09230 RAM_RS09245 SM00422 helix_turn_helix, mercury resistance RAM_RS09265 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS09280 SM00382 ATPases associated with a variety of cellular activities RAM_RS09290 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS09290 SM00895 RAM_RS09290 RAM_RS09375 SM00882 Coenzyme A transferase RAM_RS09380 SM00882 Coenzyme A transferase RAM_RS09410 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS09420 SM00382 ATPases associated with a variety of cellular activities RAM_RS09430 SM00327 von Willebrand factor (vWF) type A domain RAM_RS09445 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS09450 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_RS09460 SM00267 diguanylate cyclase RAM_RS09480 SM00060 Fibronectin type 3 domain RAM_RS09515 SM00382 ATPases associated with a variety of cellular activities RAM_RS09535 SM00354 helix_turn _helix lactose operon repressor RAM_RS09570 SM00387 Histidine kinase-like ATPases RAM_RS09570 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS09575 SM00448 cheY-homologous receiver domain RAM_RS09575 SM00862 Transcriptional regulatory protein, C terminal RAM_RS09605 SM00968 SMC proteins Flexible Hinge Domain RAM_RS09625 SM00382 ATPases associated with a variety of cellular activities RAM_RS09625 SM00962 SRP54-type protein, GTPase domain RAM_RS09625 SM00963 SRP54-type protein, helical bundle domain RAM_RS09640 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS09675 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS09685 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_RS09700 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS09705 SM00458 Ricin-type beta-trefoil RAM_RS09750 SM00881 CoA binding domain RAM_RS09795 SM00938 Nitrogen regulatory protein P-II RAM_RS09800 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_RS09820 SM00267 diguanylate cyclase RAM_RS09825 SM00822 RAM_RS09825 RAM_RS09840 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen RAM_RS09845 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS09850 SM00382 ATPases associated with a variety of cellular activities RAM_RS09855 SM00382 ATPases associated with a variety of cellular activities RAM_RS09855 SM00962 SRP54-type protein, GTPase domain RAM_RS09855 SM00963 SRP54-type protein, helical bundle domain RAM_RS09925 SM00382 ATPases associated with a variety of cellular activities RAM_RS10015 SM00861 Transketolase, pyrimidine binding domain RAM_RS10035 SM00758 RAM_RS10035 RAM_RS10070 SM00382 ATPases associated with a variety of cellular activities RAM_RS10080 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS10120 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS10130 SM00422 helix_turn_helix, mercury resistance RAM_RS10165 SM00829 Enoylreductase RAM_RS10170 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS10215 SM00822 RAM_RS10215 RAM_RS10235 SM00028 Tetratricopeptide repeats RAM_RS10235 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS10235 SM00862 Transcriptional regulatory protein, C terminal RAM_RS10235 SM01043 Bacterial transcriptional activator domain RAM_RS10245 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS10270 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_RS10290 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS10325 SM00382 ATPases associated with a variety of cellular activities RAM_RS10340 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS10340 SM00895 RAM_RS10340 RAM_RS10360 SM00020 Trypsin-like serine protease RAM_RS10375 SM00487 DEAD-like helicases superfamily RAM_RS10375 SM00490 helicase superfamily c-terminal domain RAM_RS10380 SM00090 RIO-like kinase RAM_RS10405 SM00849 Metallo-beta-lactamase superfamily RAM_RS10510 SM00421 helix_turn_helix, Lux Regulon RAM_RS10510 SM00448 cheY-homologous receiver domain RAM_RS10540 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RAM_RS10540 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RAM_RS10585 SM00825 Beta-ketoacyl synthase RAM_RS10600 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS10615 SM00382 ATPases associated with a variety of cellular activities RAM_RS10645 SM00822 RAM_RS10645 RAM_RS10745 SM00020 Trypsin-like serine protease RAM_RS10765 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS10820 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS10845 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS10845 SM00895 RAM_RS10845 RAM_RS10855 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS10875 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS10875 SM00895 RAM_RS10875 RAM_RS10880 SM00481 DNA polymerase alpha chain like domain RAM_RS10925 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_RS10955 SM00014 Acid phosphatase homologues RAM_RS10985 SM00860 SMI1 / KNR4 family RAM_RS11040 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS11040 SM00866 RAM_RS11040 RAM_RS11090 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS11145 SM00465 GIY-YIG type nucleases (URI domain) RAM_RS11145 SM00479 RAM_RS11145 RAM_RS11190 SM00947 Carbonic anhydrase RAM_RS11195 SM00947 Carbonic anhydrase RAM_RS11205 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_RS11205 SM00876 Biotin and Thiamin Synthesis associated domain RAM_RS11225 SM00464 Found in ATP-dependent protease La (LON) RAM_RS11295 SM00020 Trypsin-like serine protease RAM_RS11310 SM00382 ATPases associated with a variety of cellular activities RAM_RS11360 SM00421 helix_turn_helix, Lux Regulon RAM_RS11360 SM00448 cheY-homologous receiver domain RAM_RS11365 SM00421 helix_turn_helix, Lux Regulon RAM_RS11365 SM00448 cheY-homologous receiver domain RAM_RS11420 SM00422 helix_turn_helix, mercury resistance RAM_RS11430 SM00861 Transketolase, pyrimidine binding domain RAM_RS11545 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS11590 SM00422 helix_turn_helix, mercury resistance RAM_RS11600 SM00644 RAM_RS11600 RAM_RS11600 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. RAM_RS11610 SM01230 RAM_RS11610 RAM_RS11635 SM00822 RAM_RS11635 RAM_RS11670 SM00822 RAM_RS11670 RAM_RS11675 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS11690 SM00244 prohibitin homologues RAM_RS11700 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS11700 SM00740 RAM_RS11700 RAM_RS11790 SM00382 ATPases associated with a variety of cellular activities RAM_RS11790 SM00487 DEAD-like helicases superfamily RAM_RS11790 SM00490 helicase superfamily c-terminal domain RAM_RS11795 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_RS11795 SM01134 RAM_RS11795 RAM_RS11825 SM00382 ATPases associated with a variety of cellular activities RAM_RS11890 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS11915 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS11920 SM00382 ATPases associated with a variety of cellular activities RAM_RS11925 SM00448 cheY-homologous receiver domain RAM_RS11925 SM00862 Transcriptional regulatory protein, C terminal RAM_RS11930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS11930 SM00387 Histidine kinase-like ATPases RAM_RS11930 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS11955 SM00014 Acid phosphatase homologues RAM_RS11960 SM00915 Jacalin-like lectin domain RAM_RS11965 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS11970 SM00458 Ricin-type beta-trefoil RAM_RS12005 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_RS12120 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS12130 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_RS12140 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS12155 SM00421 helix_turn_helix, Lux Regulon RAM_RS12155 SM00448 cheY-homologous receiver domain RAM_RS12185 SM00529 Helix-turn-helix diphteria tox regulatory element RAM_RS12190 SM00450 Rhodanese Homology Domain RAM_RS12200 SM00881 CoA binding domain RAM_RS12225 SM00822 RAM_RS12225 RAM_RS12305 SM00354 helix_turn _helix lactose operon repressor RAM_RS12390 SM00563 Phosphate acyltransferases RAM_RS12415 SM00421 helix_turn_helix, Lux Regulon RAM_RS12435 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS12440 SM00636 RAM_RS12440 RAM_RS12460 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS12475 SM00421 helix_turn_helix, Lux Regulon RAM_RS12555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS12555 SM00387 Histidine kinase-like ATPases RAM_RS12560 SM00960 Roadblock/LC7 domain RAM_RS12585 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS12615 SM00487 DEAD-like helicases superfamily RAM_RS12615 SM00490 helicase superfamily c-terminal domain RAM_RS12675 SM00904 Riboflavin kinase RAM_RS12725 SM00903 Flavin reductase like domain RAM_RS12765 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS12825 SM00344 helix_turn_helix ASNC type RAM_RS12865 SM00460 Transglutaminase/protease-like homologues RAM_RS12905 SM00020 Trypsin-like serine protease RAM_RS12915 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS12915 SM00866 RAM_RS12915 RAM_RS13005 SM00487 DEAD-like helicases superfamily RAM_RS13015 SM00382 ATPases associated with a variety of cellular activities RAM_RS13040 SM01230 RAM_RS13040 RAM_RS13060 SM00642 Alpha-amylase domain RAM_RS13065 SM00642 Alpha-amylase domain RAM_RS13070 SM00642 Alpha-amylase domain RAM_RS13075 SM00642 Alpha-amylase domain RAM_RS13080 SM00642 Alpha-amylase domain RAM_RS13085 SM00642 Alpha-amylase domain RAM_RS13095 SM00642 Alpha-amylase domain RAM_RS13190 SM00861 Transketolase, pyrimidine binding domain RAM_RS13195 SM00354 helix_turn _helix lactose operon repressor RAM_RS13230 SM00448 cheY-homologous receiver domain RAM_RS13230 SM00862 Transcriptional regulatory protein, C terminal RAM_RS13235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS13235 SM00387 Histidine kinase-like ATPases RAM_RS13235 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS13245 SM00481 DNA polymerase alpha chain like domain RAM_RS13305 SM00341 Helicase and RNase D C-terminal RAM_RS13305 SM00474 3'-5' exonuclease RAM_RS13310 SM00421 helix_turn_helix, Lux Regulon RAM_RS13310 SM00448 cheY-homologous receiver domain RAM_RS13370 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS13395 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_RS13525 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS13580 SM01230 RAM_RS13580 RAM_RS13590 SM00862 Transcriptional regulatory protein, C terminal RAM_RS13590 SM01043 Bacterial transcriptional activator domain RAM_RS13605 SM00305 Hint (Hedgehog/Intein) domain C-terminal region RAM_RS13605 SM00306 Hint (Hedgehog/Intein) domain N-terminal region RAM_RS13650 SM00382 ATPases associated with a variety of cellular activities RAM_RS13675 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RAM_RS13680 SM00732 Likely ribonuclease with RNase H fold. RAM_RS13715 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS13740 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS13740 SM00866 RAM_RS13740 RAM_RS13815 SM00841 Elongation factor P, C-terminal RAM_RS13815 SM01185 RAM_RS13815 RAM_RS13830 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS13855 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RAM_RS13870 SM00851 MGS-like domain RAM_RS13870 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RAM_RS13875 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RAM_RS13885 SM00072 Guanylate kinase homologues. RAM_RS13890 SM01409 RAM_RS13890 RAM_RS13950 SM00098 Alkaline phosphatase homologues RAM_RS13955 SM00421 helix_turn_helix, Lux Regulon RAM_RS13955 SM00448 cheY-homologous receiver domain RAM_RS13995 SM00020 Trypsin-like serine protease RAM_RS14000 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RAM_RS14000 SM00465 GIY-YIG type nucleases (URI domain) RAM_RS14045 SM00060 Fibronectin type 3 domain RAM_RS14045 SM00606 Cellulose Binding Domain Type IV RAM_RS14085 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS14100 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RAM_RS14155 SM00861 Transketolase, pyrimidine binding domain RAM_RS14200 SM00829 Enoylreductase RAM_RS14240 SM00382 ATPases associated with a variety of cellular activities RAM_RS14265 SM00382 ATPases associated with a variety of cellular activities RAM_RS14315 SM00421 helix_turn_helix, Lux Regulon RAM_RS14315 SM00448 cheY-homologous receiver domain RAM_RS14385 SM00052 Putative diguanylate phosphodiesterase RAM_RS14385 SM00267 diguanylate cyclase RAM_RS14390 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS14405 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_RS14420 SM00382 ATPases associated with a variety of cellular activities RAM_RS14440 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS14445 SM00382 ATPases associated with a variety of cellular activities RAM_RS14485 SM00052 Putative diguanylate phosphodiesterase RAM_RS14485 SM00091 PAS domain RAM_RS14485 SM00267 diguanylate cyclase RAM_RS14555 SM00878 Biotin carboxylase C-terminal domain RAM_RS14595 SM00267 diguanylate cyclase RAM_RS14640 SM00458 Ricin-type beta-trefoil RAM_RS14675 SM00422 helix_turn_helix, mercury resistance RAM_RS14690 SM00320 WD40 repeats RAM_RS14710 SM00344 helix_turn_helix ASNC type RAM_RS14755 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS14770 SM00421 helix_turn_helix, Lux Regulon RAM_RS14770 SM00448 cheY-homologous receiver domain RAM_RS14845 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS14885 SM00864 Tubulin/FtsZ family, GTPase domain RAM_RS14885 SM00865 Tubulin/FtsZ family, C-terminal domain RAM_RS14920 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS14940 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS14965 SM00363 S4 RNA-binding domain RAM_RS15015 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS15030 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS15075 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS15115 SM00382 ATPases associated with a variety of cellular activities RAM_RS15135 SM00341 Helicase and RNase D C-terminal RAM_RS15135 SM00487 DEAD-like helicases superfamily RAM_RS15135 SM00490 helicase superfamily c-terminal domain RAM_RS15135 SM00956 RAM_RS15135 RAM_RS15145 SM00822 RAM_RS15145 RAM_RS15165 SM00422 helix_turn_helix, mercury resistance RAM_RS15180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS15180 SM00387 Histidine kinase-like ATPases RAM_RS15180 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS15185 SM00448 cheY-homologous receiver domain RAM_RS15185 SM00862 Transcriptional regulatory protein, C terminal RAM_RS15190 SM00014 Acid phosphatase homologues RAM_RS15210 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS15210 SM00895 RAM_RS15210 RAM_RS15270 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS15275 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS15280 SM00829 Enoylreductase RAM_RS15320 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS15325 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_RS15355 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS15355 SM00866 RAM_RS15355 RAM_RS15370 SM00331 Sigma factor PP2C-like phosphatases RAM_RS15375 SM00331 Sigma factor PP2C-like phosphatases RAM_RS15380 SM00387 Histidine kinase-like ATPases RAM_RS15395 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS15400 SM00331 Sigma factor PP2C-like phosphatases RAM_RS15415 SM00822 RAM_RS15415 RAM_RS15425 SM00642 Alpha-amylase domain RAM_RS15470 SM00354 helix_turn _helix lactose operon repressor RAM_RS15510 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS15535 SM01001 AIR carboxylase RAM_RS15555 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS15560 SM00822 RAM_RS15560 RAM_RS15570 SM00382 ATPases associated with a variety of cellular activities RAM_RS15585 SM00812 Alpha-L-fucosidase RAM_RS15590 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS15590 SM00895 RAM_RS15590 RAM_RS15605 SM00354 helix_turn _helix lactose operon repressor RAM_RS15630 SM00823 Phosphopantetheine attachment site RAM_RS15630 SM01294 RAM_RS15630 RAM_RS15635 SM00923 MbtH-like protein RAM_RS15645 SM00823 Phosphopantetheine attachment site RAM_RS15645 SM01294 RAM_RS15645 RAM_RS15680 SM00829 Enoylreductase RAM_RS15685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_RS15715 SM00422 helix_turn_helix, mercury resistance RAM_RS15745 SM00829 Enoylreductase RAM_RS15830 SM00822 RAM_RS15830 RAM_RS15835 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS15840 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS15840 SM00895 RAM_RS15840 RAM_RS15860 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS15865 SM00862 Transcriptional regulatory protein, C terminal RAM_RS15865 SM01043 Bacterial transcriptional activator domain RAM_RS15875 SM00387 Histidine kinase-like ATPases RAM_RS15880 SM00421 helix_turn_helix, Lux Regulon RAM_RS15880 SM00448 cheY-homologous receiver domain RAM_RS15905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS15905 SM00387 Histidine kinase-like ATPases RAM_RS15905 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS15910 SM00448 cheY-homologous receiver domain RAM_RS15910 SM00862 Transcriptional regulatory protein, C terminal RAM_RS15925 SM00382 ATPases associated with a variety of cellular activities RAM_RS15955 SM00382 ATPases associated with a variety of cellular activities RAM_RS15970 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RAM_RS15970 SM00292 breast cancer carboxy-terminal domain RAM_RS15970 SM00532 Ligase N family RAM_RS15990 SM00960 Roadblock/LC7 domain RAM_RS16060 SM00642 Alpha-amylase domain RAM_RS16095 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_RS16105 SM00354 helix_turn _helix lactose operon repressor RAM_RS16110 SM00637 RAM_RS16110 RAM_RS16115 SM00637 RAM_RS16115 RAM_RS16140 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS16170 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS16225 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS16250 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS16270 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS16290 SM01130 RAM_RS16290 RAM_RS16305 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_RS16310 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_RS16465 SM00829 Enoylreductase RAM_RS16515 SM00014 Acid phosphatase homologues RAM_RS16535 SM00637 RAM_RS16535 RAM_RS16540 SM00606 Cellulose Binding Domain Type IV RAM_RS16545 SM00633 Glycosyl hydrolase family 10 RAM_RS16545 SM00637 RAM_RS16545 RAM_RS16550 SM00637 RAM_RS16550 RAM_RS16560 SM00458 Ricin-type beta-trefoil RAM_RS16565 SM00812 Alpha-L-fucosidase RAM_RS16570 SM00458 Ricin-type beta-trefoil RAM_RS16575 SM00458 Ricin-type beta-trefoil RAM_RS16575 SM00710 Parallel beta-helix repeats RAM_RS16580 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS16580 SM00895 RAM_RS16580 RAM_RS16585 SM00458 Ricin-type beta-trefoil RAM_RS16590 SM00354 helix_turn _helix lactose operon repressor RAM_RS16595 SM00458 Ricin-type beta-trefoil RAM_RS16600 SM00458 Ricin-type beta-trefoil RAM_RS16630 SM00822 RAM_RS16630 RAM_RS16640 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS16675 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS16675 SM00866 RAM_RS16675 RAM_RS16700 SM00495 Chitin-binding domain type 3 RAM_RS16715 SM00226 Low molecular weight phosphatase family RAM_RS16715 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS16725 SM00421 helix_turn_helix, Lux Regulon RAM_RS16745 SM00267 diguanylate cyclase RAM_RS16750 SM00354 helix_turn _helix lactose operon repressor RAM_RS16780 SM00020 Trypsin-like serine protease RAM_RS16800 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS16865 SM00954 Region found in RelA / SpoT proteins RAM_RS16885 SM00631 RAM_RS16885 RAM_RS16895 SM00271 DnaJ molecular chaperone homology domain RAM_RS16910 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS16940 SM00822 RAM_RS16940 RAM_RS16940 SM00823 Phosphopantetheine attachment site RAM_RS16940 SM00825 Beta-ketoacyl synthase RAM_RS16940 SM00826 RAM_RS16940 RAM_RS16940 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS16975 SM00822 RAM_RS16975 RAM_RS16980 SM00822 RAM_RS16980 RAM_RS16990 SM00882 Coenzyme A transferase RAM_RS16995 SM00882 Coenzyme A transferase RAM_RS17060 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS17060 SM00895 RAM_RS17060 RAM_RS17065 SM00477 DNA/RNA non-specific endonuclease RAM_RS17065 SM00892 DNA/RNA non-specific endonuclease RAM_RS17070 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS17090 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain RAM_RS17090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS17125 SM00458 Ricin-type beta-trefoil RAM_RS17130 SM00354 helix_turn _helix lactose operon repressor RAM_RS17155 SM00458 Ricin-type beta-trefoil RAM_RS17215 SM00354 helix_turn _helix lactose operon repressor RAM_RS17270 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS17290 SM00849 Metallo-beta-lactamase superfamily RAM_RS17295 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS17345 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RAM_RS17395 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS17420 SM00382 ATPases associated with a variety of cellular activities RAM_RS17425 SM00382 ATPases associated with a variety of cellular activities RAM_RS17465 SM00822 RAM_RS17465 RAM_RS17490 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS17495 SM00829 Enoylreductase RAM_RS17500 SM00606 Cellulose Binding Domain Type IV RAM_RS17525 SM01007 Class II Aldolase and Adducin N-terminal domain RAM_RS17555 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS17560 SM00382 ATPases associated with a variety of cellular activities RAM_RS17560 SM00421 helix_turn_helix, Lux Regulon RAM_RS17590 SM00822 RAM_RS17590 RAM_RS17595 SM00823 Phosphopantetheine attachment site RAM_RS17600 SM00825 Beta-ketoacyl synthase RAM_RS17610 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS17610 SM00895 RAM_RS17610 RAM_RS17630 SM00829 Enoylreductase RAM_RS17645 SM00421 helix_turn_helix, Lux Regulon RAM_RS17735 SM00487 DEAD-like helicases superfamily RAM_RS17735 SM00490 helicase superfamily c-terminal domain RAM_RS17745 SM00382 ATPases associated with a variety of cellular activities RAM_RS17810 SM00448 cheY-homologous receiver domain RAM_RS17810 SM00862 Transcriptional regulatory protein, C terminal RAM_RS17815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS17815 SM00387 Histidine kinase-like ATPases RAM_RS17815 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS17830 SM00382 ATPases associated with a variety of cellular activities RAM_RS17840 SM00829 Enoylreductase RAM_RS17865 SM00387 Histidine kinase-like ATPases RAM_RS17870 SM00421 helix_turn_helix, Lux Regulon RAM_RS17870 SM00448 cheY-homologous receiver domain RAM_RS17895 SM00448 cheY-homologous receiver domain RAM_RS17905 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS17925 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS17945 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS18000 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS18005 SM00458 Ricin-type beta-trefoil RAM_RS18010 SM00448 cheY-homologous receiver domain RAM_RS18010 SM00862 Transcriptional regulatory protein, C terminal RAM_RS18015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS18015 SM00387 Histidine kinase-like ATPases RAM_RS18015 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS18060 SM00138 Methyltransferase, chemotaxis proteins RAM_RS18085 SM00829 Enoylreductase RAM_RS18095 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RAM_RS18095 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RAM_RS18100 SM00947 Carbonic anhydrase RAM_RS18150 SM00822 RAM_RS18150 RAM_RS18155 SM00320 WD40 repeats RAM_RS18170 SM00422 helix_turn_helix, mercury resistance RAM_RS18200 SM00641 Glycosyl hydrolases family 25 RAM_RS18220 SM00028 Tetratricopeptide repeats RAM_RS18220 SM00862 Transcriptional regulatory protein, C terminal RAM_RS18220 SM01043 Bacterial transcriptional activator domain RAM_RS18225 SM00421 helix_turn_helix, Lux Regulon RAM_RS18275 SM00382 ATPases associated with a variety of cellular activities RAM_RS18315 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS18320 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_RS18335 SM00776 RAM_RS18335 RAM_RS18450 SM00829 Enoylreductase RAM_RS18525 SM00458 Ricin-type beta-trefoil RAM_RS18530 SM00823 Phosphopantetheine attachment site RAM_RS18530 SM00824 Thioesterase RAM_RS18530 SM00825 Beta-ketoacyl synthase RAM_RS18530 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS18540 SM00823 Phosphopantetheine attachment site RAM_RS18565 SM00900 RAM_RS18565 RAM_RS18575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS18575 SM00387 Histidine kinase-like ATPases RAM_RS18575 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS18580 SM00448 cheY-homologous receiver domain RAM_RS18580 SM00862 Transcriptional regulatory protein, C terminal RAM_RS18590 SM00421 helix_turn_helix, Lux Regulon RAM_RS18590 SM00448 cheY-homologous receiver domain RAM_RS18640 SM00344 helix_turn_helix ASNC type RAM_RS18650 SM00829 Enoylreductase RAM_RS18665 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS18675 SM00060 Fibronectin type 3 domain RAM_RS18675 SM00458 Ricin-type beta-trefoil RAM_RS18705 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS18730 SM00829 Enoylreductase RAM_RS18735 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS18740 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS18755 SM00331 Sigma factor PP2C-like phosphatases RAM_RS18755 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RAM_RS18775 SM00641 Glycosyl hydrolases family 25 RAM_RS18820 SM00382 ATPases associated with a variety of cellular activities RAM_RS18825 SM00382 ATPases associated with a variety of cellular activities RAM_RS18840 SM00458 Ricin-type beta-trefoil RAM_RS18845 SM00458 Ricin-type beta-trefoil RAM_RS18865 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS18915 SM00205 Thaumatin family RAM_RS18935 SM00448 cheY-homologous receiver domain RAM_RS18935 SM00862 Transcriptional regulatory protein, C terminal RAM_RS18940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS18940 SM00387 Histidine kinase-like ATPases RAM_RS18940 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS18975 SM00421 helix_turn_helix, Lux Regulon RAM_RS18990 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS19005 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS19105 SM00560 LamG-like jellyroll fold domain RAM_RS19135 SM00862 Transcriptional regulatory protein, C terminal RAM_RS19135 SM01043 Bacterial transcriptional activator domain RAM_RS19155 SM00829 Enoylreductase RAM_RS19175 SM00829 Enoylreductase RAM_RS19195 SM00822 RAM_RS19195 RAM_RS19225 SM00382 ATPases associated with a variety of cellular activities RAM_RS19230 SM00382 ATPases associated with a variety of cellular activities RAM_RS19275 SM00507 HNH nucleases RAM_RS19295 SM00849 Metallo-beta-lactamase superfamily RAM_RS19310 SM00881 CoA binding domain RAM_RS19400 SM00822 RAM_RS19400 RAM_RS19410 SM00822 RAM_RS19410 RAM_RS19455 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS19455 SM00895 RAM_RS19455 RAM_RS19465 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS19495 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS19495 SM00895 RAM_RS19495 RAM_RS19500 SM00822 RAM_RS19500 RAM_RS19550 SM00028 Tetratricopeptide repeats RAM_RS19620 SM00421 helix_turn_helix, Lux Regulon RAM_RS19650 SM00421 helix_turn_helix, Lux Regulon RAM_RS19665 SM00060 Fibronectin type 3 domain RAM_RS19695 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_RS19695 SM01134 RAM_RS19695 RAM_RS19725 SM00458 Ricin-type beta-trefoil RAM_RS19735 SM00822 RAM_RS19735 RAM_RS19735 SM00823 Phosphopantetheine attachment site RAM_RS19735 SM00825 Beta-ketoacyl synthase RAM_RS19735 SM00826 RAM_RS19735 RAM_RS19735 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS19735 SM01294 RAM_RS19735 RAM_RS19750 SM00829 Enoylreductase RAM_RS19765 SM00060 Fibronectin type 3 domain RAM_RS19765 SM01067 Cellulose binding domain RAM_RS19770 SM00458 Ricin-type beta-trefoil RAM_RS19775 SM00458 Ricin-type beta-trefoil RAM_RS19805 SM00862 Transcriptional regulatory protein, C terminal RAM_RS19805 SM01043 Bacterial transcriptional activator domain RAM_RS19815 SM00382 ATPases associated with a variety of cellular activities RAM_RS19835 SM00422 helix_turn_helix, mercury resistance RAM_RS19865 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS19885 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS19885 SM00895 RAM_RS19885 RAM_RS19925 SM00823 Phosphopantetheine attachment site RAM_RS19925 SM00824 Thioesterase RAM_RS19960 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS20010 SM00829 Enoylreductase RAM_RS20030 SM00458 Ricin-type beta-trefoil RAM_RS20035 SM00458 Ricin-type beta-trefoil RAM_RS20065 SM00637 RAM_RS20065 RAM_RS20070 SM00458 Ricin-type beta-trefoil RAM_RS20075 SM00458 Ricin-type beta-trefoil RAM_RS20080 SM00458 Ricin-type beta-trefoil RAM_RS20080 SM00633 Glycosyl hydrolase family 10 RAM_RS20085 SM00829 Enoylreductase RAM_RS20100 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS20115 SM01217 RAM_RS20115 RAM_RS20130 SM00633 Glycosyl hydrolase family 10 RAM_RS20130 SM00637 RAM_RS20130 RAM_RS20145 SM00825 Beta-ketoacyl synthase RAM_RS20175 SM00862 Transcriptional regulatory protein, C terminal RAM_RS20175 SM01043 Bacterial transcriptional activator domain RAM_RS20205 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS20210 SM00028 Tetratricopeptide repeats RAM_RS20210 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS20210 SM00862 Transcriptional regulatory protein, C terminal RAM_RS20210 SM01043 Bacterial transcriptional activator domain RAM_RS20230 SM00421 helix_turn_helix, Lux Regulon RAM_RS20230 SM00448 cheY-homologous receiver domain RAM_RS20240 SM00382 ATPases associated with a variety of cellular activities RAM_RS20255 SM00823 Phosphopantetheine attachment site RAM_RS20275 SM00823 Phosphopantetheine attachment site RAM_RS20275 SM00824 Thioesterase RAM_RS20285 SM00923 MbtH-like protein RAM_RS20290 SM00382 ATPases associated with a variety of cellular activities RAM_RS20315 SM00822 RAM_RS20315 RAM_RS20325 SM00825 Beta-ketoacyl synthase RAM_RS20335 SM01043 Bacterial transcriptional activator domain RAM_RS20365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS20365 SM00387 Histidine kinase-like ATPases RAM_RS20365 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS20370 SM00448 cheY-homologous receiver domain RAM_RS20370 SM00862 Transcriptional regulatory protein, C terminal RAM_RS20430 SM00823 Phosphopantetheine attachment site RAM_RS20430 SM01294 RAM_RS20430 RAM_RS20435 SM00823 Phosphopantetheine attachment site RAM_RS20435 SM00825 Beta-ketoacyl synthase RAM_RS20445 SM00237 Domains in Na-Ca exchangers and integrin-beta4 RAM_RS20515 SM00422 helix_turn_helix, mercury resistance RAM_RS20520 SM00422 helix_turn_helix, mercury resistance RAM_RS20550 SM00354 helix_turn _helix lactose operon repressor RAM_RS20570 SM00637 RAM_RS20570 RAM_RS20590 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS20595 SM00637 RAM_RS20595 RAM_RS20605 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS20605 SM00091 PAS domain RAM_RS20605 SM00331 Sigma factor PP2C-like phosphatases RAM_RS20665 SM00155 Phospholipase D. Active site motifs. RAM_RS20690 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS20705 SM00382 ATPases associated with a variety of cellular activities RAM_RS20715 SM00822 RAM_RS20715 RAM_RS20775 SM00091 PAS domain RAM_RS20775 SM00138 Methyltransferase, chemotaxis proteins RAM_RS20875 SM00833 Cobalamin synthesis protein cobW C-terminal domain RAM_RS20930 SM00631 RAM_RS20930 RAM_RS20940 SM00878 Biotin carboxylase C-terminal domain RAM_RS20960 SM00481 DNA polymerase alpha chain like domain RAM_RS20975 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS21055 SM00487 DEAD-like helicases superfamily RAM_RS21055 SM00490 helicase superfamily c-terminal domain RAM_RS21060 SM01012 RAM_RS21060 RAM_RS21075 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS21075 SM01012 RAM_RS21075 RAM_RS21080 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS21080 SM01012 RAM_RS21080 RAM_RS21170 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS21180 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS21190 SM00710 Parallel beta-helix repeats RAM_RS21200 SM00859 Semialdehyde dehydrogenase, NAD binding domain RAM_RS21285 SM00344 helix_turn_helix ASNC type RAM_RS21305 SM00421 helix_turn_helix, Lux Regulon RAM_RS21305 SM00448 cheY-homologous receiver domain RAM_RS21320 SM00637 RAM_RS21320 RAM_RS21325 SM00507 HNH nucleases RAM_RS21330 SM00387 Histidine kinase-like ATPases RAM_RS21385 SM00422 helix_turn_helix, mercury resistance RAM_RS21445 SM00984 UDP binding domain RAM_RS21455 SM00822 RAM_RS21455 RAM_RS21520 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS21580 SM00704 CDGSH-type zinc finger. Function unknown. RAM_RS21585 SM01236 RAM_RS21585 RAM_RS21635 SM00382 ATPases associated with a variety of cellular activities RAM_RS21665 SM00028 Tetratricopeptide repeats RAM_RS21665 SM00862 Transcriptional regulatory protein, C terminal RAM_RS21665 SM01043 Bacterial transcriptional activator domain RAM_RS21695 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS21745 SM00829 Enoylreductase RAM_RS21760 SM00382 ATPases associated with a variety of cellular activities RAM_RS21760 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS21785 SM00822 RAM_RS21785 RAM_RS21795 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS21800 SM00867 YceI-like domain RAM_RS21835 SM00354 helix_turn _helix lactose operon repressor RAM_RS21840 SM00606 Cellulose Binding Domain Type IV RAM_RS21840 SM01217 RAM_RS21840 RAM_RS21860 SM00052 Putative diguanylate phosphodiesterase RAM_RS21860 SM00091 PAS domain RAM_RS21860 SM00267 diguanylate cyclase RAM_RS21880 SM00240 Forkhead associated domain RAM_RS21930 SM00028 Tetratricopeptide repeats RAM_RS21980 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS21985 SM00421 helix_turn_helix, Lux Regulon RAM_RS21985 SM00448 cheY-homologous receiver domain RAM_RS22025 SM00354 helix_turn _helix lactose operon repressor RAM_RS22030 SM00776 RAM_RS22030 RAM_RS22030 SM01029 Beta-galactosidase, domain 2 RAM_RS22050 SM00637 RAM_RS22050 RAM_RS22050 SM00710 Parallel beta-helix repeats RAM_RS22070 SM00354 helix_turn _helix lactose operon repressor RAM_RS22080 SM00382 ATPases associated with a variety of cellular activities RAM_RS22095 SM00560 LamG-like jellyroll fold domain RAM_RS22095 SM00813 Alpha-L-arabinofuranosidase C-terminus RAM_RS22105 SM01007 Class II Aldolase and Adducin N-terminal domain RAM_RS22120 SM00382 ATPases associated with a variety of cellular activities RAM_RS22150 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS22180 SM00829 Enoylreductase RAM_RS22190 SM00028 Tetratricopeptide repeats RAM_RS22190 SM00382 ATPases associated with a variety of cellular activities RAM_RS22190 SM00862 Transcriptional regulatory protein, C terminal RAM_RS22190 SM01043 Bacterial transcriptional activator domain RAM_RS22210 SM00344 helix_turn_helix ASNC type RAM_RS22225 SM00354 helix_turn _helix lactose operon repressor RAM_RS22270 SM00656 RAM_RS22270 RAM_RS22290 SM01029 Beta-galactosidase, domain 2 RAM_RS22300 SM00862 Transcriptional regulatory protein, C terminal RAM_RS22300 SM01043 Bacterial transcriptional activator domain RAM_RS22350 SM00382 ATPases associated with a variety of cellular activities RAM_RS22395 SM00829 Enoylreductase RAM_RS22420 SM00422 helix_turn_helix, mercury resistance RAM_RS22445 SM00838 Elongation factor G C-terminus RAM_RS22445 SM00889 Elongation factor G, domain IV RAM_RS22485 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS22495 SM00823 Phosphopantetheine attachment site RAM_RS22495 SM00824 Thioesterase RAM_RS22495 SM00825 Beta-ketoacyl synthase RAM_RS22495 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS22515 SM00822 RAM_RS22515 RAM_RS22550 SM00822 RAM_RS22550 RAM_RS22570 SM00028 Tetratricopeptide repeats RAM_RS22595 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_RS22595 SM01134 RAM_RS22595 RAM_RS22620 SM01217 RAM_RS22620 RAM_RS22625 SM00354 helix_turn _helix lactose operon repressor RAM_RS22650 SM00354 helix_turn _helix lactose operon repressor RAM_RS22655 SM00633 Glycosyl hydrolase family 10 RAM_RS22670 SM00357 Cold shock protein domain RAM_RS22675 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. RAM_RS22715 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS22715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS22715 SM00387 Histidine kinase-like ATPases RAM_RS22715 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS22715 SM00448 cheY-homologous receiver domain RAM_RS22720 SM00331 Sigma factor PP2C-like phosphatases RAM_RS22720 SM01012 RAM_RS22720 RAM_RS22765 SM00736 Dystroglycan-type cadherin-like domains. RAM_RS22780 SM00354 helix_turn _helix lactose operon repressor RAM_RS22785 SM00382 ATPases associated with a variety of cellular activities RAM_RS22815 SM01007 Class II Aldolase and Adducin N-terminal domain RAM_RS22830 SM00421 helix_turn_helix, Lux Regulon RAM_RS22830 SM00448 cheY-homologous receiver domain RAM_RS22845 SM00354 helix_turn _helix lactose operon repressor RAM_RS22875 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS22935 SM00881 CoA binding domain RAM_RS22955 SM00881 CoA binding domain RAM_RS22965 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS22965 SM00895 RAM_RS22965 RAM_RS22980 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_RS22985 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS23005 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_RS23015 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS23075 SM01038 Beta galactosidase small chain RAM_RS23080 SM00354 helix_turn _helix lactose operon repressor RAM_RS23110 SM00822 RAM_RS23110 RAM_RS23110 SM00825 Beta-ketoacyl synthase RAM_RS23110 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS23115 SM00825 Beta-ketoacyl synthase RAM_RS23115 SM00826 RAM_RS23115 RAM_RS23115 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS23135 SM00822 RAM_RS23135 RAM_RS23165 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain RAM_RS23165 SM00710 Parallel beta-helix repeats RAM_RS23210 SM00354 helix_turn _helix lactose operon repressor RAM_RS23235 SM00422 helix_turn_helix, mercury resistance RAM_RS23275 SM00855 Phosphoglycerate mutase family RAM_RS23295 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS23340 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS23345 SM00829 Enoylreductase RAM_RS23380 SM00382 ATPases associated with a variety of cellular activities RAM_RS23430 SM00244 prohibitin homologues RAM_RS23435 SM00244 prohibitin homologues RAM_RS23450 SM00198 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. RAM_RS23480 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS23535 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS23560 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS23610 SM00382 ATPases associated with a variety of cellular activities RAM_RS23620 SM00487 DEAD-like helicases superfamily RAM_RS23620 SM00490 helicase superfamily c-terminal domain RAM_RS23660 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS23675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS23725 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_RS23725 SM01134 RAM_RS23725 RAM_RS23765 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS23790 SM00028 Tetratricopeptide repeats RAM_RS23790 SM00862 Transcriptional regulatory protein, C terminal RAM_RS23790 SM01043 Bacterial transcriptional activator domain RAM_RS23800 SM01260 RAM_RS23800 RAM_RS23810 SM01043 Bacterial transcriptional activator domain RAM_RS23865 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS23875 SM01209 RAM_RS23875 RAM_RS23905 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS23910 SM00823 Phosphopantetheine attachment site RAM_RS23915 SM00923 MbtH-like protein RAM_RS23920 SM00823 Phosphopantetheine attachment site RAM_RS23925 SM00823 Phosphopantetheine attachment site RAM_RS23955 SM00862 Transcriptional regulatory protein, C terminal RAM_RS23955 SM01043 Bacterial transcriptional activator domain RAM_RS23970 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS24010 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS24015 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS24015 SM00895 RAM_RS24015 RAM_RS24040 SM00923 MbtH-like protein RAM_RS24045 SM00823 Phosphopantetheine attachment site RAM_RS24075 SM00823 Phosphopantetheine attachment site RAM_RS24075 SM00824 Thioesterase RAM_RS24095 SM00823 Phosphopantetheine attachment site RAM_RS24100 SM01043 Bacterial transcriptional activator domain RAM_RS24110 SM00028 Tetratricopeptide repeats RAM_RS24110 SM00382 ATPases associated with a variety of cellular activities RAM_RS24110 SM00862 Transcriptional regulatory protein, C terminal RAM_RS24110 SM01043 Bacterial transcriptional activator domain RAM_RS24120 SM00422 helix_turn_helix, mercury resistance RAM_RS24120 SM00567 E-Z type HEAT repeats RAM_RS24160 SM00458 Ricin-type beta-trefoil RAM_RS24180 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS24190 SM00849 Metallo-beta-lactamase superfamily RAM_RS24205 SM00421 helix_turn_helix, Lux Regulon RAM_RS24205 SM00448 cheY-homologous receiver domain RAM_RS24210 SM00421 helix_turn_helix, Lux Regulon RAM_RS24220 SM00327 von Willebrand factor (vWF) type A domain RAM_RS24300 SM00382 ATPases associated with a variety of cellular activities RAM_RS24315 SM00710 Parallel beta-helix repeats RAM_RS24330 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS24330 SM00419 helix_turn_helix, cAMP Regulatory protein RAM_RS24350 SM00829 Enoylreductase RAM_RS24375 SM00382 ATPases associated with a variety of cellular activities RAM_RS24380 SM00382 ATPases associated with a variety of cellular activities RAM_RS24395 SM00822 RAM_RS24395 RAM_RS24405 SM00450 Rhodanese Homology Domain RAM_RS24435 SM00344 helix_turn_helix ASNC type RAM_RS24445 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RAM_RS24445 SM00475 5'-3' exonuclease RAM_RS24465 SM00487 DEAD-like helicases superfamily RAM_RS24465 SM00490 helicase superfamily c-terminal domain RAM_RS24465 SM01142 RAM_RS24465 RAM_RS24475 SM00046 Diacylglycerol kinase catalytic domain (presumed) RAM_RS24510 SM00829 Enoylreductase RAM_RS24530 SM00014 Acid phosphatase homologues RAM_RS24530 SM00046 Diacylglycerol kinase catalytic domain (presumed) RAM_RS24580 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS24600 SM00382 ATPases associated with a variety of cellular activities RAM_RS24660 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS24660 SM00478 endonuclease III RAM_RS24660 SM01009 AlkA N-terminal domain RAM_RS24710 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS24715 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS24720 SM00382 ATPases associated with a variety of cellular activities RAM_RS24730 SM00422 helix_turn_helix, mercury resistance RAM_RS24740 SM00327 von Willebrand factor (vWF) type A domain RAM_RS24780 SM00822 RAM_RS24780 RAM_RS24790 SM00448 cheY-homologous receiver domain RAM_RS24790 SM00862 Transcriptional regulatory protein, C terminal RAM_RS24795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS24795 SM00387 Histidine kinase-like ATPases RAM_RS24795 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS24820 SM00327 von Willebrand factor (vWF) type A domain RAM_RS24905 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_RS24940 SM01091 Transporter associated domain RAM_RS24965 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS25000 SM00422 helix_turn_helix, mercury resistance RAM_RS25015 SM00422 helix_turn_helix, mercury resistance RAM_RS25025 SM00422 helix_turn_helix, mercury resistance RAM_RS25030 SM00240 Forkhead associated domain RAM_RS25085 SM00382 ATPases associated with a variety of cellular activities RAM_RS25115 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS25160 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS25185 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS25190 SM00382 ATPases associated with a variety of cellular activities RAM_RS25200 SM00849 Metallo-beta-lactamase superfamily RAM_RS25205 SM00896 Ferredoxin-fold anticodon binding domain RAM_RS25230 SM00382 ATPases associated with a variety of cellular activities RAM_RS25235 SM00923 MbtH-like protein RAM_RS25250 SM00823 Phosphopantetheine attachment site RAM_RS25265 SM00382 ATPases associated with a variety of cellular activities RAM_RS25310 SM00382 ATPases associated with a variety of cellular activities RAM_RS25325 SM00060 Fibronectin type 3 domain RAM_RS25325 SM00636 RAM_RS25325 RAM_RS25325 SM00637 RAM_RS25325 RAM_RS25365 SM00028 Tetratricopeptide repeats RAM_RS25410 SM00633 Glycosyl hydrolase family 10 RAM_RS25425 SM00060 Fibronectin type 3 domain RAM_RS25425 SM00637 RAM_RS25425 RAM_RS25430 SM00060 Fibronectin type 3 domain RAM_RS25430 SM00637 RAM_RS25430 RAM_RS25445 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS25450 SM00354 helix_turn _helix lactose operon repressor RAM_RS25455 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS25470 SM00382 ATPases associated with a variety of cellular activities RAM_RS25475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS25475 SM00387 Histidine kinase-like ATPases RAM_RS25475 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS25480 SM00448 cheY-homologous receiver domain RAM_RS25480 SM00862 Transcriptional regulatory protein, C terminal RAM_RS25495 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS25510 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS25570 SM00382 ATPases associated with a variety of cellular activities RAM_RS25590 SM00944 Pro-kumamolisin, activation domain RAM_RS25595 SM00994 ClpX C4-type zinc finger RAM_RS25615 SM00641 Glycosyl hydrolases family 25 RAM_RS25620 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_RS25665 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS25835 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS25860 SM00458 Ricin-type beta-trefoil RAM_RS25880 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS25905 SM00448 cheY-homologous receiver domain RAM_RS25910 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RAM_RS25910 SM00091 PAS domain RAM_RS25910 SM00387 Histidine kinase-like ATPases RAM_RS25920 SM00421 helix_turn_helix, Lux Regulon RAM_RS25920 SM00448 cheY-homologous receiver domain RAM_RS25965 SM00421 helix_turn_helix, Lux Regulon RAM_RS25980 SM01018 B12 binding domain RAM_RS25995 SM00637 RAM_RS25995 RAM_RS26000 SM00829 Enoylreductase RAM_RS26025 SM00637 RAM_RS26025 RAM_RS26040 SM00637 RAM_RS26040 RAM_RS26045 SM00354 helix_turn _helix lactose operon repressor RAM_RS26055 SM00637 RAM_RS26055 RAM_RS26060 SM00637 RAM_RS26060 RAM_RS26065 SM00637 RAM_RS26065 RAM_RS26070 SM00354 helix_turn _helix lactose operon repressor RAM_RS26105 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_RS26110 SM00986 Uracil DNA glycosylase superfamily RAM_RS26110 SM00987 UreE urease accessory protein, C-terminal domain RAM_RS26125 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen RAM_RS26140 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS26140 SM01012 RAM_RS26140 RAM_RS26170 SM00880 RAM_RS26170 RAM_RS26170 SM01118 RAM_RS26170 RAM_RS26180 SM01012 RAM_RS26180 RAM_RS26240 SM00812 Alpha-L-fucosidase RAM_RS26300 SM00507 HNH nucleases RAM_RS26315 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_RS26325 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS26345 SM00354 helix_turn _helix lactose operon repressor RAM_RS26350 SM01217 RAM_RS26350 RAM_RS26370 SM00849 Metallo-beta-lactamase superfamily RAM_RS26375 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS26415 SM00996 S-adenosyl-L-homocysteine hydrolase RAM_RS26415 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RAM_RS26430 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen RAM_RS26450 SM00960 Roadblock/LC7 domain RAM_RS26455 SM00387 Histidine kinase-like ATPases RAM_RS26465 SM00382 ATPases associated with a variety of cellular activities RAM_RS26470 SM00382 ATPases associated with a variety of cellular activities RAM_RS26490 SM00028 Tetratricopeptide repeats RAM_RS26490 SM00862 Transcriptional regulatory protein, C terminal RAM_RS26490 SM01043 Bacterial transcriptional activator domain RAM_RS26500 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS26515 SM00849 Metallo-beta-lactamase superfamily RAM_RS26545 SM00421 helix_turn_helix, Lux Regulon RAM_RS26560 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS26570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_RS26570 SM00954 Region found in RelA / SpoT proteins RAM_RS26590 SM01323 RAM_RS26590 RAM_RS26595 SM00382 ATPases associated with a variety of cellular activities RAM_RS26640 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS26660 SM00823 Phosphopantetheine attachment site RAM_RS26665 SM00824 Thioesterase RAM_RS26675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS26685 SM00838 Elongation factor G C-terminus RAM_RS26685 SM00889 Elongation factor G, domain IV RAM_RS26725 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS26735 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RAM_RS26780 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_RS26810 SM00822 RAM_RS26810 RAM_RS26825 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS26840 SM00344 helix_turn_helix ASNC type RAM_RS26845 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS26910 SM00046 Diacylglycerol kinase catalytic domain (presumed) RAM_RS26930 SM00710 Parallel beta-helix repeats RAM_RS26965 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_RS27045 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS27045 SM00895 RAM_RS27045 RAM_RS27105 SM00823 Phosphopantetheine attachment site RAM_RS27140 SM00421 helix_turn_helix, Lux Regulon RAM_RS27140 SM00448 cheY-homologous receiver domain RAM_RS27145 SM00387 Histidine kinase-like ATPases RAM_RS27155 SM00382 ATPases associated with a variety of cellular activities RAM_RS27170 SM00823 Phosphopantetheine attachment site RAM_RS27205 SM00382 ATPases associated with a variety of cellular activities RAM_RS27230 SM00862 Transcriptional regulatory protein, C terminal RAM_RS27230 SM01043 Bacterial transcriptional activator domain RAM_RS27275 SM00822 RAM_RS27275 RAM_RS27295 SM00825 Beta-ketoacyl synthase RAM_RS27300 SM00825 Beta-ketoacyl synthase RAM_RS27390 SM00028 Tetratricopeptide repeats RAM_RS27390 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS27420 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS27455 SM00831 Cation transporter/ATPase, N-terminus RAM_RS27475 SM00881 CoA binding domain RAM_RS27480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS27490 SM00421 helix_turn_helix, Lux Regulon RAM_RS27490 SM00448 cheY-homologous receiver domain RAM_RS27505 SM00382 ATPases associated with a variety of cellular activities RAM_RS27520 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_RS27535 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_RS27580 SM00421 helix_turn_helix, Lux Regulon RAM_RS27580 SM00448 cheY-homologous receiver domain RAM_RS27590 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS27590 SM01012 RAM_RS27590 RAM_RS27605 SM00448 cheY-homologous receiver domain RAM_RS27630 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS27635 SM00849 Metallo-beta-lactamase superfamily RAM_RS27655 SM00387 Histidine kinase-like ATPases RAM_RS27660 SM00421 helix_turn_helix, Lux Regulon RAM_RS27660 SM00448 cheY-homologous receiver domain RAM_RS27670 SM00710 Parallel beta-helix repeats RAM_RS27680 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS27710 SM00855 Phosphoglycerate mutase family RAM_RS27730 SM00306 Hint (Hedgehog/Intein) domain N-terminal region RAM_RS27735 SM00560 LamG-like jellyroll fold domain RAM_RS27770 SM00267 diguanylate cyclase RAM_RS27780 SM00458 Ricin-type beta-trefoil RAM_RS27825 SM00382 ATPases associated with a variety of cellular activities RAM_RS27830 SM00382 ATPases associated with a variety of cellular activities RAM_RS27900 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS27920 SM00028 Tetratricopeptide repeats RAM_RS27940 SM01012 RAM_RS27940 RAM_RS27955 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS27975 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS27975 SM00387 Histidine kinase-like ATPases RAM_RS27985 SM00421 helix_turn_helix, Lux Regulon RAM_RS27985 SM00448 cheY-homologous receiver domain RAM_RS27990 SM00749 bacterial OsmY and nodulation domain RAM_RS27995 SM00244 prohibitin homologues RAM_RS28010 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS28010 SM01012 RAM_RS28010 RAM_RS28015 SM01012 RAM_RS28015 RAM_RS28105 SM00458 Ricin-type beta-trefoil RAM_RS28115 SM00448 cheY-homologous receiver domain RAM_RS28115 SM00862 Transcriptional regulatory protein, C terminal RAM_RS28120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS28120 SM00387 Histidine kinase-like ATPases RAM_RS28120 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS28165 SM00822 RAM_RS28165 RAM_RS28185 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS28200 SM00458 Ricin-type beta-trefoil RAM_RS28210 SM00822 RAM_RS28210 RAM_RS28245 SM00637 RAM_RS28245 RAM_RS28290 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS28335 SM00421 helix_turn_helix, Lux Regulon RAM_RS28340 SM00421 helix_turn_helix, Lux Regulon RAM_RS28370 SM00822 RAM_RS28370 RAM_RS28385 SM00421 helix_turn_helix, Lux Regulon RAM_RS28400 SM00382 ATPases associated with a variety of cellular activities RAM_RS28460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS28460 SM00387 Histidine kinase-like ATPases RAM_RS28460 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS28465 SM00448 cheY-homologous receiver domain RAM_RS28465 SM00862 Transcriptional regulatory protein, C terminal RAM_RS28640 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS28665 SM00357 Cold shock protein domain RAM_RS28700 SM00560 LamG-like jellyroll fold domain RAM_RS28700 SM01038 Beta galactosidase small chain RAM_RS28765 SM00448 cheY-homologous receiver domain RAM_RS28765 SM00862 Transcriptional regulatory protein, C terminal RAM_RS28770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS28770 SM00387 Histidine kinase-like ATPases RAM_RS28770 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS28785 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS28795 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS28830 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS28925 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_RS28955 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS28965 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS29000 SM00354 helix_turn _helix lactose operon repressor RAM_RS29020 SM00421 helix_turn_helix, Lux Regulon RAM_RS29025 SM00354 helix_turn _helix lactose operon repressor RAM_RS29035 SM00849 Metallo-beta-lactamase superfamily RAM_RS29045 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS29085 SM00028 Tetratricopeptide repeats RAM_RS29195 SM01101 RAM_RS29195 RAM_RS29300 SM00320 WD40 repeats RAM_RS29320 SM00637 RAM_RS29320 RAM_RS29350 SM00422 helix_turn_helix, mercury resistance RAM_RS29350 SM00871 Bacterial transcription activator, effector binding domain RAM_RS29355 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS29365 SM00368 Leucine rich repeat, ribonuclease inhibitor type RAM_RS29375 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_RS29375 SM01134 RAM_RS29375 RAM_RS29420 SM00327 von Willebrand factor (vWF) type A domain RAM_RS29425 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS29440 SM00382 ATPases associated with a variety of cellular activities RAM_RS29445 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS29460 SM00507 HNH nucleases RAM_RS29465 SM00344 helix_turn_helix ASNC type RAM_RS29475 SM00421 helix_turn_helix, Lux Regulon RAM_RS29475 SM00448 cheY-homologous receiver domain RAM_RS29490 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS29565 SM00382 ATPases associated with a variety of cellular activities RAM_RS29580 SM00633 Glycosyl hydrolase family 10 RAM_RS29580 SM00637 RAM_RS29580 RAM_RS29585 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS29605 SM00855 Phosphoglycerate mutase family RAM_RS29610 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS29610 SM00331 Sigma factor PP2C-like phosphatases RAM_RS29625 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS29625 SM00331 Sigma factor PP2C-like phosphatases RAM_RS29635 SM00091 PAS domain RAM_RS29635 SM00331 Sigma factor PP2C-like phosphatases RAM_RS29635 SM00387 Histidine kinase-like ATPases RAM_RS29635 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS29635 SM00448 cheY-homologous receiver domain RAM_RS29645 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS29645 SM01012 RAM_RS29645 RAM_RS29690 SM00028 Tetratricopeptide repeats RAM_RS29690 SM00862 Transcriptional regulatory protein, C terminal RAM_RS29690 SM01043 Bacterial transcriptional activator domain RAM_RS29695 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS29790 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS29820 SM00382 ATPases associated with a variety of cellular activities RAM_RS29845 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS29930 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS30000 SM00327 von Willebrand factor (vWF) type A domain RAM_RS30040 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS30045 SM01130 RAM_RS30045 RAM_RS30055 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS30085 SM00421 helix_turn_helix, Lux Regulon RAM_RS30085 SM00448 cheY-homologous receiver domain RAM_RS30120 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS30155 SM00823 Phosphopantetheine attachment site RAM_RS30160 SM00382 ATPases associated with a variety of cellular activities RAM_RS30165 SM00563 Phosphate acyltransferases RAM_RS30195 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS30205 SM00363 S4 RNA-binding domain RAM_RS30255 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS30255 SM00895 RAM_RS30255 RAM_RS30295 SM00829 Enoylreductase RAM_RS30300 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS30315 SM00363 S4 RNA-binding domain RAM_RS30410 SM00859 Semialdehyde dehydrogenase, NAD binding domain RAM_RS30435 SM00873 B3/4 domain RAM_RS30435 SM00874 tRNA synthetase B5 domain RAM_RS30435 SM00896 Ferredoxin-fold anticodon binding domain RAM_RS30475 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS30475 SM00895 RAM_RS30475 RAM_RS30490 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS30500 SM01119 RAM_RS30500 RAM_RS30545 SM00448 cheY-homologous receiver domain RAM_RS30550 SM00091 PAS domain RAM_RS30550 SM00387 Histidine kinase-like ATPases RAM_RS30605 SM00849 Metallo-beta-lactamase superfamily RAM_RS30630 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_RS30630 SM00419 helix_turn_helix, cAMP Regulatory protein RAM_RS30670 SM00855 Phosphoglycerate mutase family RAM_RS30685 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS30690 SM00354 helix_turn _helix lactose operon repressor RAM_RS30700 SM00953 RAM_RS30700 RAM_RS30720 SM00382 ATPases associated with a variety of cellular activities RAM_RS30720 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS30760 SM00487 DEAD-like helicases superfamily RAM_RS30760 SM00490 helicase superfamily c-terminal domain RAM_RS30805 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_RS30825 SM00382 ATPases associated with a variety of cellular activities RAM_RS30840 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS30845 SM00829 Enoylreductase RAM_RS30855 SM00054 EF-hand, calcium binding motif RAM_RS30860 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RAM_RS30860 SM00474 3'-5' exonuclease RAM_RS30860 SM00475 5'-3' exonuclease RAM_RS30860 SM00482 DNA polymerase A domain RAM_RS30895 SM00382 ATPases associated with a variety of cellular activities RAM_RS30900 SM00382 ATPases associated with a variety of cellular activities RAM_RS30910 SM00448 cheY-homologous receiver domain RAM_RS30910 SM01012 RAM_RS30910 RAM_RS30965 SM00943 Bifunctional DNA primase/polymerase, N-terminal RAM_RS31045 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS31145 SM00421 helix_turn_helix, Lux Regulon RAM_RS31145 SM00448 cheY-homologous receiver domain RAM_RS31165 SM00421 helix_turn_helix, Lux Regulon RAM_RS31165 SM00448 cheY-homologous receiver domain RAM_RS31230 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS31240 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS31250 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS31265 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS31285 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS31295 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS31295 SM01012 RAM_RS31295 RAM_RS31335 SM00823 Phosphopantetheine attachment site RAM_RS31340 SM00823 Phosphopantetheine attachment site RAM_RS31355 SM00823 Phosphopantetheine attachment site RAM_RS31365 SM00923 MbtH-like protein RAM_RS31370 SM00823 Phosphopantetheine attachment site RAM_RS31400 SM00823 Phosphopantetheine attachment site RAM_RS31405 SM00421 helix_turn_helix, Lux Regulon RAM_RS31525 SM00460 Transglutaminase/protease-like homologues RAM_RS31550 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_RS31550 SM01232 RAM_RS31550 RAM_RS31585 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS31600 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_RS31635 SM00843 RAM_RS31635 RAM_RS31640 SM00563 Phosphate acyltransferases RAM_RS31670 SM00327 von Willebrand factor (vWF) type A domain RAM_RS31675 SM00849 Metallo-beta-lactamase superfamily RAM_RS31680 SM01130 RAM_RS31680 RAM_RS31685 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS31735 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS31770 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_RS31770 SM00322 K homology RNA-binding domain RAM_RS31775 SM01387 RAM_RS31775 RAM_RS31790 SM00904 Riboflavin kinase RAM_RS31880 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_RS31930 SM00421 helix_turn_helix, Lux Regulon RAM_RS31930 SM00448 cheY-homologous receiver domain RAM_RS31955 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS31970 SM00448 cheY-homologous receiver domain RAM_RS31970 SM00862 Transcriptional regulatory protein, C terminal RAM_RS31975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS31975 SM00387 Histidine kinase-like ATPases RAM_RS31975 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS31985 SM00028 Tetratricopeptide repeats RAM_RS31995 SM00028 Tetratricopeptide repeats RAM_RS31995 SM00862 Transcriptional regulatory protein, C terminal RAM_RS31995 SM01043 Bacterial transcriptional activator domain RAM_RS32040 SM00822 RAM_RS32040 RAM_RS32115 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS32130 SM00028 Tetratricopeptide repeats RAM_RS32130 SM00862 Transcriptional regulatory protein, C terminal RAM_RS32130 SM01043 Bacterial transcriptional activator domain RAM_RS32165 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS32185 SM00387 Histidine kinase-like ATPases RAM_RS32190 SM00960 Roadblock/LC7 domain RAM_RS32280 SM00829 Enoylreductase RAM_RS32330 SM00458 Ricin-type beta-trefoil RAM_RS32335 SM00458 Ricin-type beta-trefoil RAM_RS32335 SM00633 Glycosyl hydrolase family 10 RAM_RS32390 SM00421 helix_turn_helix, Lux Regulon RAM_RS32405 SM01043 Bacterial transcriptional activator domain RAM_RS32470 SM00028 Tetratricopeptide repeats RAM_RS32470 SM00862 Transcriptional regulatory protein, C terminal RAM_RS32470 SM01043 Bacterial transcriptional activator domain RAM_RS32500 SM00849 Metallo-beta-lactamase superfamily RAM_RS32505 SM00421 helix_turn_helix, Lux Regulon RAM_RS32510 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_RS32520 SM00421 helix_turn_helix, Lux Regulon RAM_RS32560 SM00421 helix_turn_helix, Lux Regulon RAM_RS32565 SM00421 helix_turn_helix, Lux Regulon RAM_RS32575 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS32580 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS32590 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain RAM_RS32625 SM00382 ATPases associated with a variety of cellular activities RAM_RS32635 SM00387 Histidine kinase-like ATPases RAM_RS32640 SM00421 helix_turn_helix, Lux Regulon RAM_RS32640 SM00448 cheY-homologous receiver domain RAM_RS32695 SM00382 ATPases associated with a variety of cellular activities RAM_RS32710 SM00421 helix_turn_helix, Lux Regulon RAM_RS32710 SM00448 cheY-homologous receiver domain RAM_RS32790 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS32795 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS32815 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS32815 SM01012 RAM_RS32815 RAM_RS32850 SM00382 ATPases associated with a variety of cellular activities RAM_RS32885 SM01012 RAM_RS32885 RAM_RS32890 SM01012 RAM_RS32890 RAM_RS32905 SM01012 RAM_RS32905 RAM_RS32910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS32910 SM01012 RAM_RS32910 RAM_RS32915 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS32915 SM01012 RAM_RS32915 RAM_RS32935 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS32935 SM01012 RAM_RS32935 RAM_RS32940 SM00331 Sigma factor PP2C-like phosphatases RAM_RS32990 SM01012 RAM_RS32990 RAM_RS32995 SM00829 Enoylreductase RAM_RS33025 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS33075 SM00829 Enoylreductase RAM_RS33085 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_RS33095 SM00382 ATPases associated with a variety of cellular activities RAM_RS33120 SM00400 zinc finger RAM_RS33120 SM00493 RAM_RS33120 RAM_RS33120 SM00766 DNA primase DnaG DnaB-binding RAM_RS33145 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS33170 SM00093 SERine Proteinase INhibitors RAM_RS33175 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_RS33185 SM00421 helix_turn_helix, Lux Regulon RAM_RS33185 SM00448 cheY-homologous receiver domain RAM_RS33200 SM00382 ATPases associated with a variety of cellular activities RAM_RS33225 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS33300 SM01091 Transporter associated domain RAM_RS33325 SM00271 DnaJ molecular chaperone homology domain RAM_RS33390 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS33390 SM00387 Histidine kinase-like ATPases RAM_RS33390 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS33395 SM00448 cheY-homologous receiver domain RAM_RS33395 SM00862 Transcriptional regulatory protein, C terminal RAM_RS33450 SM00829 Enoylreductase RAM_RS33455 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_RS33535 SM00829 Enoylreductase RAM_RS33555 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS33560 SM00495 Chitin-binding domain type 3 RAM_RS33590 SM00838 Elongation factor G C-terminus RAM_RS33630 SM00849 Metallo-beta-lactamase superfamily RAM_RS33635 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RAM_RS33650 SM00855 Phosphoglycerate mutase family RAM_RS33665 SM00487 DEAD-like helicases superfamily RAM_RS33665 SM00490 helicase superfamily c-terminal domain RAM_RS33675 SM00836 DALR anticodon binding domain RAM_RS33675 SM01016 Arginyl tRNA synthetase N terminal dom RAM_RS33700 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RAM_RS33720 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_RS33740 SM00382 ATPases associated with a variety of cellular activities RAM_RS33755 SM00562 RAM_RS33755 RAM_RS33815 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS33875 SM00382 ATPases associated with a variety of cellular activities RAM_RS33875 SM00994 ClpX C4-type zinc finger RAM_RS33875 SM01086 C-terminal, D2-small domain, of ClpB protein RAM_RS33910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS33910 SM00387 Histidine kinase-like ATPases RAM_RS33910 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS33925 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS33945 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS33950 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_RS33950 SM00419 helix_turn_helix, cAMP Regulatory protein RAM_RS33990 SM00862 Transcriptional regulatory protein, C terminal RAM_RS33990 SM01043 Bacterial transcriptional activator domain RAM_RS33995 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RAM_RS34020 SM00028 Tetratricopeptide repeats RAM_RS34040 SM00382 ATPases associated with a variety of cellular activities RAM_RS34070 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS34115 SM00331 Sigma factor PP2C-like phosphatases RAM_RS34120 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS34120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS34120 SM00387 Histidine kinase-like ATPases RAM_RS34120 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS34120 SM00448 cheY-homologous receiver domain RAM_RS34155 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS34185 SM00822 RAM_RS34185 RAM_RS34215 SM00606 Cellulose Binding Domain Type IV RAM_RS34245 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_RS34245 SM01232 RAM_RS34245 RAM_RS34260 SM00849 Metallo-beta-lactamase superfamily RAM_RS34295 SM00507 HNH nucleases RAM_RS34310 SM00642 Alpha-amylase domain RAM_RS34340 SM00382 ATPases associated with a variety of cellular activities RAM_RS34350 SM00855 Phosphoglycerate mutase family RAM_RS34495 SM00903 Flavin reductase like domain RAM_RS34505 SM00822 RAM_RS34505 RAM_RS34505 SM00825 Beta-ketoacyl synthase RAM_RS34505 SM00826 RAM_RS34505 RAM_RS34505 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_RS34555 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS34560 SM00862 Transcriptional regulatory protein, C terminal RAM_RS34560 SM01043 Bacterial transcriptional activator domain RAM_RS34600 SM00421 helix_turn_helix, Lux Regulon RAM_RS34600 SM00448 cheY-homologous receiver domain RAM_RS34605 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS34610 SM00421 helix_turn_helix, Lux Regulon RAM_RS34610 SM00448 cheY-homologous receiver domain RAM_RS34700 SM00822 RAM_RS34700 RAM_RS34715 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_RS34750 SM00710 Parallel beta-helix repeats RAM_RS34755 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain RAM_RS34755 SM00710 Parallel beta-helix repeats RAM_RS34760 SM00448 cheY-homologous receiver domain RAM_RS34760 SM00862 Transcriptional regulatory protein, C terminal RAM_RS34765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS34765 SM00387 Histidine kinase-like ATPases RAM_RS34765 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS34775 SM00354 helix_turn _helix lactose operon repressor RAM_RS34795 SM00642 Alpha-amylase domain RAM_RS34800 SM00382 ATPases associated with a variety of cellular activities RAM_RS34865 SM00563 Phosphate acyltransferases RAM_RS34875 SM00354 helix_turn _helix lactose operon repressor RAM_RS34890 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS34895 SM00448 cheY-homologous receiver domain RAM_RS34895 SM00862 Transcriptional regulatory protein, C terminal RAM_RS34900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS34900 SM00387 Histidine kinase-like ATPases RAM_RS34900 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS34990 SM00849 Metallo-beta-lactamase superfamily RAM_RS35005 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_RS35035 SM00822 RAM_RS35035 RAM_RS35070 SM00855 Phosphoglycerate mutase family RAM_RS35080 SM00822 RAM_RS35080 RAM_RS35090 SM00421 helix_turn_helix, Lux Regulon RAM_RS35105 SM00482 DNA polymerase A domain RAM_RS35115 SM00382 ATPases associated with a variety of cellular activities RAM_RS35115 SM00487 DEAD-like helicases superfamily RAM_RS35115 SM00490 helicase superfamily c-terminal domain RAM_RS35115 SM00847 Helicase associated domain (HA2) Add an annotation RAM_RS35150 SM00481 DNA polymerase alpha chain like domain RAM_RS35160 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS35160 SM00895 RAM_RS35160 RAM_RS35185 SM00267 diguanylate cyclase RAM_RS35235 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_RS35250 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS35260 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_RS35260 SM01232 RAM_RS35260 RAM_RS35315 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS35315 SM00387 Histidine kinase-like ATPases RAM_RS35320 SM00421 helix_turn_helix, Lux Regulon RAM_RS35320 SM00448 cheY-homologous receiver domain RAM_RS35325 SM00481 DNA polymerase alpha chain like domain RAM_RS35330 SM00382 ATPases associated with a variety of cellular activities RAM_RS35335 SM00382 ATPases associated with a variety of cellular activities RAM_RS35465 SM00327 von Willebrand factor (vWF) type A domain RAM_RS35465 SM00382 ATPases associated with a variety of cellular activities RAM_RS35520 SM00382 ATPases associated with a variety of cellular activities RAM_RS35530 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS35545 SM00495 Chitin-binding domain type 3 RAM_RS35605 SM00479 RAM_RS35605 RAM_RS35655 SM00257 Lysin motif RAM_RS35655 SM01043 Bacterial transcriptional activator domain RAM_RS35775 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS35785 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS35840 SM00829 Enoylreductase RAM_RS35845 SM00861 Transketolase, pyrimidine binding domain RAM_RS35885 SM00903 Flavin reductase like domain RAM_RS35900 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS35900 SM00895 RAM_RS35900 RAM_RS35955 SM00822 RAM_RS35955 RAM_RS35980 SM00829 Enoylreductase RAM_RS36015 SM00382 ATPases associated with a variety of cellular activities RAM_RS36020 SM00382 ATPases associated with a variety of cellular activities RAM_RS36050 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS36050 SM00895 RAM_RS36050 RAM_RS36065 SM00829 Enoylreductase RAM_RS36105 SM00822 RAM_RS36105 RAM_RS36160 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS36180 SM00903 Flavin reductase like domain RAM_RS36215 SM00822 RAM_RS36215 RAM_RS36300 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_RS36320 SM00822 RAM_RS36320 RAM_RS36410 SM00829 Enoylreductase RAM_RS36425 SM00421 helix_turn_helix, Lux Regulon RAM_RS36425 SM00448 cheY-homologous receiver domain RAM_RS36445 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS36480 SM01007 Class II Aldolase and Adducin N-terminal domain RAM_RS36490 SM00849 Metallo-beta-lactamase superfamily RAM_RS36530 SM00354 helix_turn _helix lactose operon repressor RAM_RS36560 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS36560 SM00895 RAM_RS36560 RAM_RS36585 SM01217 RAM_RS36585 RAM_RS36630 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS36630 SM00866 RAM_RS36630 RAM_RS36705 SM00470 ParB-like nuclease domain RAM_RS36880 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS36920 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS36955 SM00822 RAM_RS36955 RAM_RS36960 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS37010 SM00364 Leucine-rich repeats, bacterial type RAM_RS37010 SM00369 Leucine-rich repeats, typical (most populated) subfamily RAM_RS37015 SM00306 Hint (Hedgehog/Intein) domain N-terminal region RAM_RS37020 SM00560 LamG-like jellyroll fold domain RAM_RS37030 SM00637 RAM_RS37030 RAM_RS37050 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS37095 SM00382 ATPases associated with a variety of cellular activities RAM_RS37175 SM01217 RAM_RS37175 RAM_RS37200 SM00382 ATPases associated with a variety of cellular activities RAM_RS37205 SM00060 Fibronectin type 3 domain RAM_RS37205 SM00637 RAM_RS37205 RAM_RS37210 SM00458 Ricin-type beta-trefoil RAM_RS37225 SM01012 RAM_RS37225 RAM_RS37345 SM00060 Fibronectin type 3 domain RAM_RS37345 SM00637 RAM_RS37345 RAM_RS37355 SM00354 helix_turn _helix lactose operon repressor RAM_RS37415 SM00331 Sigma factor PP2C-like phosphatases RAM_RS37425 SM01130 RAM_RS37425 RAM_RS37495 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS37505 SM00060 Fibronectin type 3 domain RAM_RS37510 SM00481 DNA polymerase alpha chain like domain RAM_RS37555 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS37560 SM00382 ATPases associated with a variety of cellular activities RAM_RS37620 SM00960 Roadblock/LC7 domain RAM_RS37625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS37625 SM00387 Histidine kinase-like ATPases RAM_RS37630 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS37660 SM00421 helix_turn_helix, Lux Regulon RAM_RS37680 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_RS37680 SM01012 RAM_RS37680 RAM_RS37690 SM00458 Ricin-type beta-trefoil RAM_RS37700 SM00813 Alpha-L-arabinofuranosidase C-terminus RAM_RS37720 SM00354 helix_turn _helix lactose operon repressor RAM_RS37745 SM00829 Enoylreductase RAM_RS37760 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. RAM_RS37810 SM00363 S4 RNA-binding domain RAM_RS37845 SM00052 Putative diguanylate phosphodiesterase RAM_RS37845 SM00267 diguanylate cyclase RAM_RS37870 SM00636 RAM_RS37870 RAM_RS37910 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS37970 SM00327 von Willebrand factor (vWF) type A domain RAM_RS37980 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS38000 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS38010 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_RS38050 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS38050 SM00895 RAM_RS38050 RAM_RS38125 SM00861 Transketolase, pyrimidine binding domain RAM_RS38135 SM00344 helix_turn_helix ASNC type RAM_RS38160 SM00448 cheY-homologous receiver domain RAM_RS38160 SM00862 Transcriptional regulatory protein, C terminal RAM_RS38165 SM00387 Histidine kinase-like ATPases RAM_RS38165 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS38175 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS38180 SM00060 Fibronectin type 3 domain RAM_RS38180 SM00636 RAM_RS38180 RAM_RS38195 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS38215 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS38245 SM00448 cheY-homologous receiver domain RAM_RS38250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS38250 SM00387 Histidine kinase-like ATPases RAM_RS38250 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS38255 SM00331 Sigma factor PP2C-like phosphatases RAM_RS38255 SM00448 cheY-homologous receiver domain RAM_RS38315 SM00822 RAM_RS38315 RAM_RS38380 SM00382 ATPases associated with a variety of cellular activities RAM_RS38400 SM00028 Tetratricopeptide repeats RAM_RS38490 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS38515 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS38560 SM00507 HNH nucleases RAM_RS38625 SM00506 Appr-1"-p processing enzyme RAM_RS38655 SM00960 Roadblock/LC7 domain RAM_RS38660 SM00387 Histidine kinase-like ATPases RAM_RS38685 SM00267 diguanylate cyclase RAM_RS38740 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS38750 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS38790 SM00849 Metallo-beta-lactamase superfamily RAM_RS38830 SM00232 JAB/MPN domain RAM_RS38880 SM00487 DEAD-like helicases superfamily RAM_RS38880 SM00491 RAM_RS38880 RAM_RS38950 SM00834 Putative regulatory protein RAM_RS38960 SM00344 helix_turn_helix ASNC type RAM_RS38970 SM00344 helix_turn_helix ASNC type RAM_RS39000 SM01120 RAM_RS39000 RAM_RS39060 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS39140 SM00382 ATPases associated with a variety of cellular activities RAM_RS39215 SM00937 RAM_RS39215 RAM_RS39225 SM00357 Cold shock protein domain RAM_RS39225 SM00382 ATPases associated with a variety of cellular activities RAM_RS39225 SM00959 Rho termination factor, N-terminal domain RAM_RS39250 SM00836 DALR anticodon binding domain RAM_RS39250 SM01016 Arginyl tRNA synthetase N terminal dom RAM_RS39275 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS39280 SM00822 RAM_RS39280 RAM_RS39300 SM00829 Enoylreductase RAM_RS39315 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS39380 SM00028 Tetratricopeptide repeats RAM_RS39380 SM00862 Transcriptional regulatory protein, C terminal RAM_RS39380 SM01043 Bacterial transcriptional activator domain RAM_RS39395 SM00710 Parallel beta-helix repeats RAM_RS39400 SM00060 Fibronectin type 3 domain RAM_RS39400 SM00458 Ricin-type beta-trefoil RAM_RS39405 SM00458 Ricin-type beta-trefoil RAM_RS39410 SM00458 Ricin-type beta-trefoil RAM_RS39415 SM00060 Fibronectin type 3 domain RAM_RS39415 SM00637 RAM_RS39415 RAM_RS39430 SM00458 Ricin-type beta-trefoil RAM_RS39435 SM00458 Ricin-type beta-trefoil RAM_RS39440 SM00710 Parallel beta-helix repeats RAM_RS39450 SM00637 RAM_RS39450 RAM_RS39455 SM00422 helix_turn_helix, mercury resistance RAM_RS39525 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS39555 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS39555 SM00419 helix_turn_helix, cAMP Regulatory protein RAM_RS39565 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS39565 SM00895 RAM_RS39565 RAM_RS39655 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS39655 SM00895 RAM_RS39655 RAM_RS39665 SM01329 RAM_RS39665 RAM_RS39695 SM00960 Roadblock/LC7 domain RAM_RS39735 SM00421 helix_turn_helix, Lux Regulon RAM_RS39735 SM00448 cheY-homologous receiver domain RAM_RS39775 SM00382 ATPases associated with a variety of cellular activities RAM_RS39860 SM00822 RAM_RS39860 RAM_RS39895 SM00878 Biotin carboxylase C-terminal domain RAM_RS39980 SM00829 Enoylreductase RAM_RS39985 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RAM_RS39985 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RAM_RS39995 SM00387 Histidine kinase-like ATPases RAM_RS40000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS40005 SM00448 cheY-homologous receiver domain RAM_RS40005 SM00862 Transcriptional regulatory protein, C terminal RAM_RS40010 SM00382 ATPases associated with a variety of cellular activities RAM_RS40020 SM00382 ATPases associated with a variety of cellular activities RAM_RS40035 SM00861 Transketolase, pyrimidine binding domain RAM_RS40085 SM00382 ATPases associated with a variety of cellular activities RAM_RS40095 SM00919 Malic enzyme, NAD binding domain RAM_RS40095 SM01274 RAM_RS40095 RAM_RS40110 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS40125 SM00855 Phosphoglycerate mutase family RAM_RS40140 SM00046 Diacylglycerol kinase catalytic domain (presumed) RAM_RS40150 SM00387 Histidine kinase-like ATPases RAM_RS40210 SM00967 RNA 2'-O ribose methyltransferase substrate binding RAM_RS40230 SM00957 SecA DEAD-like domain RAM_RS40230 SM00958 SecA preprotein cross-linking domain RAM_RS40245 SM00909 Sporulation and spore germination RAM_RS40250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS40250 SM00387 Histidine kinase-like ATPases RAM_RS40250 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS40255 SM00448 cheY-homologous receiver domain RAM_RS40255 SM00862 Transcriptional regulatory protein, C terminal RAM_RS40265 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS40320 SM00996 S-adenosyl-L-homocysteine hydrolase RAM_RS40320 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RAM_RS40345 SM00862 Transcriptional regulatory protein, C terminal RAM_RS40345 SM01043 Bacterial transcriptional activator domain RAM_RS40410 SM00382 ATPases associated with a variety of cellular activities RAM_RS40440 SM00838 Elongation factor G C-terminus RAM_RS40460 SM00387 Histidine kinase-like ATPases RAM_RS40460 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS40465 SM00448 cheY-homologous receiver domain RAM_RS40465 SM00862 Transcriptional regulatory protein, C terminal RAM_RS40475 SM00382 ATPases associated with a variety of cellular activities RAM_RS40485 SM00382 ATPases associated with a variety of cellular activities RAM_RS40525 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS40525 SM01009 AlkA N-terminal domain RAM_RS40585 SM00020 Trypsin-like serine protease RAM_RS40600 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS40620 SM00849 Metallo-beta-lactamase superfamily RAM_RS40640 SM01240 RAM_RS40640 RAM_RS40650 SM00670 Large family of predicted nucleotide-binding domains RAM_RS40750 SM00849 Metallo-beta-lactamase superfamily RAM_RS40755 SM00344 helix_turn_helix ASNC type RAM_RS40820 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_RS40850 SM00822 RAM_RS40850 RAM_RS40880 SM00421 helix_turn_helix, Lux Regulon RAM_RS40895 SM00862 Transcriptional regulatory protein, C terminal RAM_RS40895 SM01043 Bacterial transcriptional activator domain RAM_RS40900 SM00421 helix_turn_helix, Lux Regulon RAM_RS40900 SM00862 Transcriptional regulatory protein, C terminal RAM_RS40900 SM01043 Bacterial transcriptional activator domain RAM_RS40925 SM00421 helix_turn_helix, Lux Regulon RAM_RS40950 SM00344 helix_turn_helix ASNC type RAM_RS40960 SM00495 Chitin-binding domain type 3 RAM_RS40965 SM00824 Thioesterase RAM_RS40970 SM00495 Chitin-binding domain type 3 RAM_RS40975 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS40990 SM00637 RAM_RS40990 RAM_RS40995 SM00889 Elongation factor G, domain IV RAM_RS41005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS41005 SM00387 Histidine kinase-like ATPases RAM_RS41005 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS41010 SM01192 RAM_RS41010 RAM_RS41010 SM01193 RAM_RS41010 RAM_RS41020 SM00382 ATPases associated with a variety of cellular activities RAM_RS41035 SM00028 Tetratricopeptide repeats RAM_RS41045 SM00862 Transcriptional regulatory protein, C terminal RAM_RS41045 SM01043 Bacterial transcriptional activator domain RAM_RS41060 SM00382 ATPases associated with a variety of cellular activities RAM_RS41060 SM00421 helix_turn_helix, Lux Regulon RAM_RS41085 SM00382 ATPases associated with a variety of cellular activities RAM_RS41120 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS41220 SM00986 Uracil DNA glycosylase superfamily RAM_RS41220 SM00987 UreE urease accessory protein, C-terminal domain RAM_RS41240 SM00382 ATPases associated with a variety of cellular activities RAM_RS41245 SM00382 ATPases associated with a variety of cellular activities RAM_RS41285 SM01192 RAM_RS41285 RAM_RS41285 SM01193 RAM_RS41285 RAM_RS41295 SM00028 Tetratricopeptide repeats RAM_RS41345 SM00382 ATPases associated with a variety of cellular activities RAM_RS41380 SM00487 DEAD-like helicases superfamily RAM_RS41380 SM00490 helicase superfamily c-terminal domain RAM_RS41380 SM00982 RAM_RS41380 RAM_RS41380 SM01058 CarD-like/TRCF domain RAM_RS41390 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS41405 SM00387 Histidine kinase-like ATPases RAM_RS41410 SM00421 helix_turn_helix, Lux Regulon RAM_RS41410 SM00448 cheY-homologous receiver domain RAM_RS41455 SM00267 diguanylate cyclase RAM_RS41465 SM01400 RAM_RS41465 RAM_RS41510 SM00382 ATPases associated with a variety of cellular activities RAM_RS41515 SM01022 RAM_RS41515 RAM_RS41525 SM00382 ATPases associated with a variety of cellular activities RAM_RS41530 SM00650 Ribosomal RNA adenine dimethylases RAM_RS41535 SM01208 RAM_RS41535 RAM_RS41555 SM00382 ATPases associated with a variety of cellular activities RAM_RS41575 SM00829 Enoylreductase RAM_RS41595 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS41605 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS41665 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS41685 SM00052 Putative diguanylate phosphodiesterase RAM_RS41685 SM00091 PAS domain RAM_RS41685 SM00267 diguanylate cyclase RAM_RS41725 SM00448 cheY-homologous receiver domain RAM_RS41725 SM00862 Transcriptional regulatory protein, C terminal RAM_RS41730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS41730 SM00387 Histidine kinase-like ATPases RAM_RS41730 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS41765 SM00823 Phosphopantetheine attachment site RAM_RS41765 SM01294 RAM_RS41765 RAM_RS41770 SM00823 Phosphopantetheine attachment site RAM_RS41775 SM00824 Thioesterase RAM_RS41790 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS41810 SM00382 ATPases associated with a variety of cellular activities RAM_RS41830 SM00487 DEAD-like helicases superfamily RAM_RS41830 SM00490 helicase superfamily c-terminal domain RAM_RS41850 SM00852 Probable molybdopterin binding domain RAM_RS41865 SM00834 Putative regulatory protein RAM_RS41870 SM00858 RAM_RS41870 RAM_RS41885 SM00852 Probable molybdopterin binding domain RAM_RS41905 SM00387 Histidine kinase-like ATPases RAM_RS41905 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS41910 SM00448 cheY-homologous receiver domain RAM_RS41910 SM00862 Transcriptional regulatory protein, C terminal RAM_RS41945 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_RS41955 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_RS41955 SM01134 RAM_RS41955 RAM_RS41960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS41960 SM00387 Histidine kinase-like ATPases RAM_RS41960 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS41965 SM00448 cheY-homologous receiver domain RAM_RS41965 SM00862 Transcriptional regulatory protein, C terminal RAM_RS41975 SM00421 helix_turn_helix, Lux Regulon RAM_RS41975 SM00448 cheY-homologous receiver domain RAM_RS42005 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS42020 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS42100 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS42150 SM00382 ATPases associated with a variety of cellular activities RAM_RS42165 SM00382 ATPases associated with a variety of cellular activities RAM_RS42185 SM00458 Ricin-type beta-trefoil RAM_RS42190 SM00458 Ricin-type beta-trefoil RAM_RS42195 SM00458 Ricin-type beta-trefoil RAM_RS42200 SM00458 Ricin-type beta-trefoil RAM_RS42205 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS42205 SM00895 RAM_RS42205 RAM_RS42225 SM00796 Allophanate hydrolase subunit 1 RAM_RS42230 SM00797 Allophanate hydrolase subunit 2 RAM_RS42245 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS42255 SM00829 Enoylreductase RAM_RS42270 SM00529 Helix-turn-helix diphteria tox regulatory element RAM_RS42270 SM00899 RAM_RS42270 RAM_RS42400 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS42410 SM00382 ATPases associated with a variety of cellular activities RAM_RS42475 SM00944 Pro-kumamolisin, activation domain RAM_RS42485 SM00849 Metallo-beta-lactamase superfamily RAM_RS42490 SM00849 Metallo-beta-lactamase superfamily RAM_RS42570 SM00382 ATPases associated with a variety of cellular activities RAM_RS42580 SM00387 Histidine kinase-like ATPases RAM_RS42585 SM00421 helix_turn_helix, Lux Regulon RAM_RS42585 SM00448 cheY-homologous receiver domain RAM_RS42620 SM00382 ATPases associated with a variety of cellular activities RAM_RS42635 SM00448 cheY-homologous receiver domain RAM_RS42635 SM00862 Transcriptional regulatory protein, C terminal RAM_RS42640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS42640 SM00387 Histidine kinase-like ATPases RAM_RS42640 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS42700 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS42745 SM00357 Cold shock protein domain RAM_RS42790 SM00382 ATPases associated with a variety of cellular activities RAM_RS42855 SM00382 ATPases associated with a variety of cellular activities RAM_RS42875 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS42880 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_RS42890 SM00257 Lysin motif RAM_RS42900 SM00852 Probable molybdopterin binding domain RAM_RS42910 SM00919 Malic enzyme, NAD binding domain RAM_RS42910 SM01274 RAM_RS42910 RAM_RS42935 SM00960 Roadblock/LC7 domain RAM_RS42950 SM00960 Roadblock/LC7 domain RAM_RS42955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS42955 SM00387 Histidine kinase-like ATPases RAM_RS42960 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS42975 SM00382 ATPases associated with a variety of cellular activities RAM_RS42990 SM00944 Pro-kumamolisin, activation domain RAM_RS43015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS43015 SM00387 Histidine kinase-like ATPases RAM_RS43030 SM00487 DEAD-like helicases superfamily RAM_RS43030 SM00490 helicase superfamily c-terminal domain RAM_RS43050 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS43070 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS43075 SM00357 Cold shock protein domain RAM_RS43090 SM00852 Probable molybdopterin binding domain RAM_RS43100 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS43120 SM00382 ATPases associated with a variety of cellular activities RAM_RS43120 SM01072 Cell division protein 48 (CDC48) domain 2 RAM_RS43120 SM01073 Cell division protein 48 (CDC48) N-terminal domain RAM_RS43145 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_RS43170 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS43210 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS43210 SM00866 RAM_RS43210 RAM_RS43260 SM00862 Transcriptional regulatory protein, C terminal RAM_RS43260 SM01043 Bacterial transcriptional activator domain RAM_RS43290 SM00829 Enoylreductase RAM_RS43325 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS43365 SM01217 RAM_RS43365 RAM_RS43390 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS43400 SM00382 ATPases associated with a variety of cellular activities RAM_RS43425 SM00881 CoA binding domain RAM_RS43470 SM00448 cheY-homologous receiver domain RAM_RS43470 SM00862 Transcriptional regulatory protein, C terminal RAM_RS43475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS43475 SM00387 Histidine kinase-like ATPases RAM_RS43475 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS43490 SM00829 Enoylreductase RAM_RS43500 SM00346 helix_turn_helix isocitrate lyase regulation RAM_RS43510 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_RS43545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS43545 SM00387 Histidine kinase-like ATPases RAM_RS43545 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS43560 SM00028 Tetratricopeptide repeats RAM_RS43595 SM00812 Alpha-L-fucosidase RAM_RS43625 SM00422 helix_turn_helix, mercury resistance RAM_RS43670 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS43690 SM00382 ATPases associated with a variety of cellular activities RAM_RS43700 SM01058 CarD-like/TRCF domain RAM_RS43730 SM00840 RAM_RS43730 RAM_RS43735 SM00967 RNA 2'-O ribose methyltransferase substrate binding RAM_RS43750 SM00460 Transglutaminase/protease-like homologues RAM_RS43770 SM01007 Class II Aldolase and Adducin N-terminal domain RAM_RS43795 SM00382 ATPases associated with a variety of cellular activities RAM_RS43805 SM00354 helix_turn _helix lactose operon repressor RAM_RS43810 SM00947 Carbonic anhydrase RAM_RS43820 SM00478 endonuclease III RAM_RS43840 SM00382 ATPases associated with a variety of cellular activities RAM_RS43905 SM00382 ATPases associated with a variety of cellular activities RAM_RS43915 SM00862 Transcriptional regulatory protein, C terminal RAM_RS43915 SM01043 Bacterial transcriptional activator domain RAM_RS43940 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS43950 SM00382 ATPases associated with a variety of cellular activities RAM_RS43950 SM01086 C-terminal, D2-small domain, of ClpB protein RAM_RS43965 SM00342 helix_turn_helix, arabinose operon control protein RAM_RS44020 SM00422 helix_turn_helix, mercury resistance RAM_RS44030 SM00905 Dihydroneopterin aldolase RAM_RS44045 SM00382 ATPases associated with a variety of cellular activities RAM_RS44105 SM00649 Ribosomal protein L11/L12 RAM_RS44115 SM00631 RAM_RS44115 RAM_RS44145 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS44190 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS44250 SM00382 ATPases associated with a variety of cellular activities RAM_RS44285 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RAM_RS44285 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RAM_RS44285 SM00493 RAM_RS44285 RAM_RS44310 SM00487 DEAD-like helicases superfamily RAM_RS44310 SM00490 helicase superfamily c-terminal domain RAM_RS44315 SM00943 Bifunctional DNA primase/polymerase, N-terminal RAM_RS44445 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS44465 SM00478 endonuclease III RAM_RS44465 SM00525 RAM_RS44465 RAM_RS44475 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_RS44475 SM00419 helix_turn_helix, cAMP Regulatory protein RAM_RS44490 SM00480 DNA polymerase III beta subunit RAM_RS44520 SM00849 Metallo-beta-lactamase superfamily RAM_RS44575 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS44720 SM00859 Semialdehyde dehydrogenase, NAD binding domain RAM_RS44740 SM00917 LeuA allosteric (dimerisation) domain RAM_RS44800 SM00382 ATPases associated with a variety of cellular activities RAM_RS44805 SM00382 ATPases associated with a variety of cellular activities RAM_RS44860 SM00047 Lysozyme subfamily 2 RAM_RS44865 SM00493 RAM_RS44865 RAM_RS44875 SM00646 RAM_RS44875 RAM_RS44900 SM00382 ATPases associated with a variety of cellular activities RAM_RS44925 SM00960 Roadblock/LC7 domain RAM_RS44930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS44930 SM00387 Histidine kinase-like ATPases RAM_RS44935 SM00382 ATPases associated with a variety of cellular activities RAM_RS44955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS44955 SM00387 Histidine kinase-like ATPases RAM_RS44955 SM00388 His Kinase A (phosphoacceptor) domain RAM_RS44960 SM00448 cheY-homologous receiver domain RAM_RS44960 SM00862 Transcriptional regulatory protein, C terminal RAM_RS44975 SM00421 helix_turn_helix, Lux Regulon RAM_RS44975 SM00448 cheY-homologous receiver domain RAM_RS45000 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RAM_RS45015 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_RS45025 SM00331 Sigma factor PP2C-like phosphatases RAM_RS45025 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RAM_RS45080 SM00854 Bacterial capsule synthesis protein PGA_cap RAM_RS45160 SM00422 helix_turn_helix, mercury resistance RAM_RS45175 SM00382 ATPases associated with a variety of cellular activities RAM_RS45185 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS45185 SM00895 RAM_RS45185 RAM_RS45190 SM01130 RAM_RS45190 RAM_RS45210 SM00344 helix_turn_helix ASNC type RAM_RS45265 SM00458 Ricin-type beta-trefoil RAM_RS45275 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS45275 SM00866 RAM_RS45275 RAM_RS45310 SM00267 diguanylate cyclase RAM_RS45330 SM00382 ATPases associated with a variety of cellular activities RAM_RS45355 SM00862 Transcriptional regulatory protein, C terminal RAM_RS45375 SM00450 Rhodanese Homology Domain RAM_RS45390 SM00796 Allophanate hydrolase subunit 1 RAM_RS45395 SM00797 Allophanate hydrolase subunit 2 RAM_RS45445 SM00382 ATPases associated with a variety of cellular activities RAM_RS45520 SM00641 Glycosyl hydrolases family 25 RAM_RS45525 SM00641 Glycosyl hydrolases family 25 RAM_RS45555 SM00382 ATPases associated with a variety of cellular activities RAM_RS45560 SM01211 RAM_RS45560 RAM_RS45585 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_RS45595 SM00849 Metallo-beta-lactamase superfamily RAM_RS45620 SM00382 ATPases associated with a variety of cellular activities RAM_RS45630 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS45630 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RAM_RS45635 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS45640 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS45645 SM00998 Adenylosuccinate lyase C-terminus RAM_RS45650 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_RS45655 SM00822 RAM_RS45655 RAM_RS45665 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_RS45665 SM00895 RAM_RS45665 RAM_RS45740 SM01209 RAM_RS45740 RAM_RS45740 SM01210 RAM_RS45740 RAM_RS45800 SM00788 Adenylosuccinate synthetase RAM_RS45835 SM00267 diguanylate cyclase RAM_RS45875 SM00822 RAM_RS45875 RAM_RS45950 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS45960 SM00867 YceI-like domain RAM_RS45995 SM00382 ATPases associated with a variety of cellular activities RAM_RS46010 SM00354 helix_turn _helix lactose operon repressor RAM_RS46025 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_RS46070 SM00382 ATPases associated with a variety of cellular activities RAM_RS46090 SM00382 ATPases associated with a variety of cellular activities RAM_RS46090 SM01086 C-terminal, D2-small domain, of ClpB protein RAM_RS46100 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS46120 SM00495 Chitin-binding domain type 3 RAM_RS46130 SM00422 helix_turn_helix, mercury resistance RAM_RS46135 SM00271 DnaJ molecular chaperone homology domain RAM_RS46160 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS46205 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS46290 SM00986 Uracil DNA glycosylase superfamily RAM_RS46290 SM00987 UreE urease accessory protein, C-terminal domain RAM_RS46295 SM00421 helix_turn_helix, Lux Regulon RAM_RS46315 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS46320 SM00364 Leucine-rich repeats, bacterial type RAM_RS46320 SM00369 Leucine-rich repeats, typical (most populated) subfamily RAM_RS46330 SM00883 Chaperonin 10 Kd subunit RAM_RS46355 SM00382 ATPases associated with a variety of cellular activities RAM_RS46365 SM00062 Bacterial periplasmic substrate-binding proteins RAM_RS46380 SM00460 Transglutaminase/protease-like homologues RAM_RS46405 SM00861 Transketolase, pyrimidine binding domain RAM_RS46420 SM00382 ATPases associated with a variety of cellular activities RAM_RS46450 SM00487 DEAD-like helicases superfamily RAM_RS46485 SM00822 RAM_RS46485 RAM_RS46500 SM00422 helix_turn_helix, mercury resistance RAM_RS46515 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS46545 SM00530 Helix-turn-helix XRE-family like proteins RAM_RS46565 SM00382 ATPases associated with a variety of cellular activities RAM_RS46615 SM00421 helix_turn_helix, Lux Regulon RAM_RS46615 SM00448 cheY-homologous receiver domain RAM_RS46630 SM00382 ATPases associated with a variety of cellular activities RAM_RS46640 SM00382 ATPases associated with a variety of cellular activities RAM_RS46665 SM00382 ATPases associated with a variety of cellular activities RAM_RS46675 SM00421 helix_turn_helix, Lux Regulon RAM_RS46675 SM00448 cheY-homologous receiver domain RAM_RS46695 SM00822 RAM_RS46695 RAM_RS46715 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS46775 SM00518 AP endonuclease family 2 RAM_RS46835 SM00382 ATPases associated with a variety of cellular activities RAM_RS46840 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_RS46875 SM00421 helix_turn_helix, Lux Regulon RAM_RS46875 SM00448 cheY-homologous receiver domain RAM_RS46960 SM00822 RAM_RS46960 RAM_RS47005 SM00954 Region found in RelA / SpoT proteins RAM_RS47045 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_RS47095 SM00646 RAM_RS47095 RAM_RS47115 SM00470 ParB-like nuclease domain RAM_RS47135 SM00393 Putative single-stranded nucleic acids-binding domain RAM_RS47145 SM01234 RAM_RS47145 RAM_RS47175 SM00857 Resolvase, N terminal domain RAM_RS47180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_RS47180 SM00387 Histidine kinase-like ATPases RAM_RS47180 SM00960 Roadblock/LC7 domain