AMED_0001 PF00308 Bacterial dnaA protein AMED_0001 PF08299 Bacterial dnaA protein helix-turn-helix AMED_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain AMED_0002 PF02767 DNA polymerase III beta subunit, central domain AMED_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain AMED_0003 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMED_0003 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_0004 PF02463 RecF/RecN/SMC N terminal domain AMED_0005 PF05258 AMED_0005 AMED_0006 PF00204 DNA gyrase B AMED_0006 PF00986 DNA gyrase B subunit, carboxyl terminus AMED_0006 PF01751 Toprim domain AMED_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0007 PF00521 DNA gyrase/topoisomerase IV, subunit A AMED_0007 PF03989 DNA gyrase C-terminal domain, beta-propeller AMED_0008 PF12089 AMED_0008 AMED_0010 PF00589 Phage integrase family AMED_0011 PF12728 Helix-turn-helix domain AMED_0012 PF12307 AMED_0012 AMED_0019 PF13560 Helix-turn-helix domain AMED_0020 PF05729 NACHT domain AMED_0020 PF13646 HEAT repeats AMED_0023 PF09995 AMED_0023 AMED_0025 PF00005 ABC transporter AMED_0026 PF01061 AMED_0026 AMED_0027 PF00486 Transcriptional regulatory protein, C terminal AMED_0027 PF03704 Bacterial transcriptional activator domain AMED_0028 PF00067 Cytochrome P450 AMED_0029 PF00561 alpha/beta hydrolase fold AMED_0029 PF08386 TAP-like protein AMED_0030 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_0030 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMED_0032 PF09449 Domain of unknown function (DUF2020) AMED_0035 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMED_0036 PF01694 Rhomboid family AMED_0037 PF10756 AMED_0037 AMED_0038 PF06781 AMED_0038 AMED_0039 PF04203 Sortase family AMED_0042 PF01061 AMED_0042 AMED_0043 PF00005 ABC transporter AMED_0044 PF07730 Histidine kinase AMED_0045 PF00072 Response regulator receiver domain AMED_0045 PF00196 Bacterial regulatory proteins, luxR family AMED_0046 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_0047 PF00117 Glutamine amidotransferase class-I AMED_0048 PF00005 ABC transporter AMED_0051 PF00069 Protein kinase domain AMED_0051 PF03793 PASTA domain AMED_0052 PF00069 Protein kinase domain AMED_0053 PF00905 Penicillin binding protein transpeptidase domain AMED_0054 PF01098 AMED_0054 AMED_0055 PF13672 Protein phosphatase 2C AMED_0056 PF00498 FHA domain AMED_0057 PF00498 FHA domain AMED_0057 PF12401 Protein of unknown function (DUF2662) AMED_0058 PF00089 Trypsin AMED_0059 PF00089 Trypsin AMED_0060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMED_0061 PF00754 F5/8 type C domain AMED_0061 PF01804 Penicillin amidase AMED_0062 PF01053 Cys/Met metabolism PLP-dependent enzyme AMED_0064 PF04203 Sortase family AMED_0065 PF01734 Patatin-like phospholipase AMED_0066 PF00392 Bacterial regulatory proteins, gntR family AMED_0066 PF07729 FCD domain AMED_0067 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_0068 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0069 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0070 PF00005 ABC transporter AMED_0071 PF00005 ABC transporter AMED_0072 PF00171 Aldehyde dehydrogenase family AMED_0073 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_0074 PF01425 Amidase AMED_0075 PF01548 AMED_0075 AMED_0075 PF02371 AMED_0075 AMED_0076 PF04542 Sigma-70 region 2 AMED_0076 PF08281 Sigma-70, region 4 AMED_0078 PF03328 HpcH/HpaI aldolase/citrate lyase family AMED_0079 PF03328 HpcH/HpaI aldolase/citrate lyase family AMED_0081 PF13460 NADH(P)-binding AMED_0082 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMED_0082 PF14572 Phosphoribosyl synthetase-associated domain AMED_0083 PF01565 FAD binding domain AMED_0083 PF04030 D-arabinono-1,4-lactone oxidase AMED_0084 PF01168 Alanine racemase, N-terminal domain AMED_0085 PF00440 Bacterial regulatory proteins, tetR family AMED_0086 PF00232 Glycosyl hydrolase family 1 AMED_0087 PF06779 AMED_0087 AMED_0087 PF07690 Major Facilitator Superfamily AMED_0090 PF13424 Tetratricopeptide repeat AMED_0090 PF13560 Helix-turn-helix domain AMED_0091 PF01636 Phosphotransferase enzyme family AMED_0092 PF05425 AMED_0092 AMED_0093 PF04234 CopC domain AMED_0094 PF07987 Domain of unkown function (DUF1775) AMED_0096 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0097 PF00005 ABC transporter AMED_0098 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0099 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMED_0101 PF13482 RNase_H superfamily AMED_0102 PF03551 Transcriptional regulator PadR-like family AMED_0103 PF08241 Methyltransferase domain AMED_0104 PF00106 short chain dehydrogenase AMED_0105 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMED_0105 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMED_0105 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMED_0106 PF01019 Gamma-glutamyltranspeptidase AMED_0108 PF01609 Transposase DDE domain AMED_0108 PF13808 AMED_0108 AMED_0109 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_0110 PF04542 Sigma-70 region 2 AMED_0110 PF08281 Sigma-70, region 4 AMED_0111 PF07690 Major Facilitator Superfamily AMED_0112 PF13560 Helix-turn-helix domain AMED_0113 PF07730 Histidine kinase AMED_0114 PF00072 Response regulator receiver domain AMED_0114 PF00196 Bacterial regulatory proteins, luxR family AMED_0115 PF16363 AMED_0115 AMED_0116 PF05050 Methyltransferase FkbM domain AMED_0117 PF00534 Glycosyl transferases group 1 AMED_0119 PF16822 AMED_0119 AMED_0120 PF00534 Glycosyl transferases group 1 AMED_0125 PF12697 Alpha/beta hydrolase family AMED_0126 PF10898 AMED_0126 AMED_0127 PF15585 AMED_0127 AMED_0128 PF04542 Sigma-70 region 2 AMED_0128 PF13490 Putative zinc-finger AMED_0130 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_0130 PF06827 Zinc finger found in FPG and IleRS AMED_0130 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMED_0131 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0131 PF06580 AMED_0131 AMED_0132 PF01343 Peptidase family S49 AMED_0133 PF00722 Glycosyl hydrolases family 16 AMED_0133 PF03422 Carbohydrate binding module (family 6) AMED_0134 PF00072 Response regulator receiver domain AMED_0134 PF04397 LytTr DNA-binding domain AMED_0136 PF00474 Sodium:solute symporter family AMED_0137 PF00581 Rhodanese-like domain AMED_0138 PF14219 AMED_0138 AMED_0139 PF00440 Bacterial regulatory proteins, tetR family AMED_0140 PF07690 Major Facilitator Superfamily AMED_0141 PF02585 GlcNAc-PI de-N-acetylase AMED_0142 PF00067 Cytochrome P450 AMED_0144 PF06108 Protein of unknown function (DUF952) AMED_0145 PF04542 Sigma-70 region 2 AMED_0145 PF08281 Sigma-70, region 4 AMED_0147 PF00210 Ferritin-like domain AMED_0148 PF02274 Amidinotransferase AMED_0149 PF02517 CAAX protease self-immunity AMED_0150 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_0151 PF10615 Protein of unknown function (DUF2470) AMED_0154 PF07690 Major Facilitator Superfamily AMED_0156 PF00092 von Willebrand factor type A domain AMED_0156 PF13531 Bacterial extracellular solute-binding protein AMED_0157 PF04209 homogentisate 1,2-dioxygenase AMED_0159 PF09339 IclR helix-turn-helix domain AMED_0160 PF06197 AMED_0160 AMED_0161 PF01169 AMED_0161 AMED_0162 PF03572 Peptidase family S41 AMED_0162 PF11918 AMED_0162 AMED_0163 PF01654 AMED_0163 AMED_0164 PF02322 AMED_0164 AMED_0165 PF00005 ABC transporter AMED_0165 PF00664 ABC transporter transmembrane region AMED_0166 PF07730 Histidine kinase AMED_0166 PF13185 GAF domain AMED_0166 PF13581 Histidine kinase-like ATPase domain AMED_0167 PF00072 Response regulator receiver domain AMED_0167 PF00196 Bacterial regulatory proteins, luxR family AMED_0168 PF05901 AMED_0168 AMED_0169 PF04203 Sortase family AMED_0170 PF13625 AMED_0170 AMED_0171 PF05901 AMED_0171 AMED_0172 PF00929 Exonuclease AMED_0173 PF11225 AMED_0173 AMED_0174 PF12643 AMED_0174 AMED_0179 PF00485 Phosphoribulokinase / Uridine kinase family AMED_0180 PF01661 Macro domain AMED_0181 PF00800 Prephenate dehydratase AMED_0181 PF01842 ACT domain AMED_0182 PF00300 Histidine phosphatase superfamily (branch 1) AMED_0183 PF14016 AMED_0183 AMED_0185 PF05977 Transmembrane secretion effector AMED_0186 PF06262 Possibl zinc metallo-peptidase AMED_0187 PF13845 AMED_0187 AMED_0189 PF03738 Glutathionylspermidine synthase preATP-grasp AMED_0190 PF03994 AMED_0190 AMED_0191 PF00561 alpha/beta hydrolase fold AMED_0192 PF00202 Aminotransferase class-III AMED_0193 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMED_0193 PF02403 Seryl-tRNA synthetase N-terminal domain AMED_0194 PF12079 AMED_0194 AMED_0195 PF01266 FAD dependent oxidoreductase AMED_0196 PF00440 Bacterial regulatory proteins, tetR family AMED_0197 PF12680 SnoaL-like domain AMED_0198 PF01381 Helix-turn-helix AMED_0199 PF00486 Transcriptional regulatory protein, C terminal AMED_0199 PF03704 Bacterial transcriptional activator domain AMED_0199 PF13401 AAA domain AMED_0200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMED_0201 PF01370 NAD dependent epimerase/dehydratase family AMED_0202 PF13579 Glycosyl transferase 4-like domain AMED_0202 PF13692 Glycosyl transferases group 1 AMED_0203 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_0204 PF04542 Sigma-70 region 2 AMED_0204 PF08281 Sigma-70, region 4 AMED_0206 PF04389 Peptidase family M28 AMED_0207 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_0208 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMED_0209 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_0209 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMED_0210 PF00550 Phosphopantetheine attachment site AMED_0211 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_0212 PF00501 AMP-binding enzyme AMED_0213 PF04443 AMED_0213 AMED_0214 PF05893 Acyl-CoA reductase (LuxC) AMED_0215 PF03706 AMED_0215 AMED_0220 PF01553 Acyltransferase AMED_0221 PF08282 haloacid dehalogenase-like hydrolase AMED_0222 PF00296 Luciferase-like monooxygenase AMED_0224 PF03275 UDP-galactopyranose mutase AMED_0224 PF13450 NAD(P)-binding Rossmann-like domain AMED_0225 PF01569 PAP2 superfamily AMED_0226 PF01040 UbiA prenyltransferase family AMED_0229 PF00106 short chain dehydrogenase AMED_0230 PF01565 FAD binding domain AMED_0230 PF04030 D-arabinono-1,4-lactone oxidase AMED_0231 PF04138 AMED_0231 AMED_0232 PF13641 Glycosyltransferase like family 2 AMED_0234 PF14011 EspG family AMED_0236 PF12079 AMED_0236 AMED_0238 PF00535 Glycosyl transferase family 2 AMED_0239 PF00005 ABC transporter AMED_0240 PF01061 AMED_0240 AMED_0241 PF10759 AMED_0241 AMED_0242 PF00266 Aminotransferase class-V AMED_0243 PF00107 Zinc-binding dehydrogenase AMED_0243 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0244 PF02225 PA domain AMED_0244 PF04389 Peptidase family M28 AMED_0245 PF04228 AMED_0245 AMED_0246 PF12802 MarR family AMED_0247 PF01734 Patatin-like phospholipase AMED_0248 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_0249 PF10041 AMED_0249 AMED_0250 PF02615 Malate/L-lactate dehydrogenase AMED_0251 PF13275 S4 domain AMED_0253 PF00106 short chain dehydrogenase AMED_0255 PF00072 Response regulator receiver domain AMED_0255 PF09339 IclR helix-turn-helix domain AMED_0256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0256 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AMED_0256 PF17203 AMED_0256 AMED_0257 PF00005 ABC transporter AMED_0258 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0259 PF09084 NMT1/THI5 like AMED_0260 PF01828 Peptidase A4 family AMED_0261 PF07077 AMED_0261 AMED_0262 PF00196 Bacterial regulatory proteins, luxR family AMED_0262 PF13191 AAA ATPase domain AMED_0263 PF02983 Alpha-lytic protease prodomain AMED_0264 PF04686 Streptomyces sporulation and cell division protein, SsgA AMED_0265 PF01037 AsnC family AMED_0265 PF13404 AsnC-type helix-turn-helix domain AMED_0266 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_0266 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMED_0267 PF00211 Adenylate and Guanylate cyclase catalytic domain AMED_0267 PF00672 HAMP domain AMED_0269 PF00392 Bacterial regulatory proteins, gntR family AMED_0269 PF07729 FCD domain AMED_0271 PF01925 AMED_0271 AMED_0272 PF00155 Aminotransferase class I and II AMED_0273 PF01738 Dienelactone hydrolase family AMED_0274 PF00501 AMP-binding enzyme AMED_0274 PF16177 AMED_0274 AMED_0275 PF09924 Uncharacterized conserved protein (DUF2156) AMED_0277 PF00553 Cellulose binding domain AMED_0277 PF00704 Glycosyl hydrolases family 18 AMED_0278 PF00553 Cellulose binding domain AMED_0278 PF00704 Glycosyl hydrolases family 18 AMED_0279 PF00202 Aminotransferase class-III AMED_0280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_0280 PF03466 LysR substrate binding domain AMED_0281 PF07721 Tetratricopeptide repeat AMED_0281 PF08238 Sel1 repeat AMED_0281 PF13374 Tetratricopeptide repeat AMED_0281 PF13432 Tetratricopeptide repeat AMED_0282 PF07510 AMED_0282 AMED_0283 PF12697 Alpha/beta hydrolase family AMED_0284 PF06725 3D domain AMED_0285 PF00881 Nitroreductase family AMED_0286 PF00248 Aldo/keto reductase family AMED_0287 PF12802 MarR family AMED_0288 PF13581 Histidine kinase-like ATPase domain AMED_0289 PF04539 Sigma-70 region 3 AMED_0289 PF04542 Sigma-70 region 2 AMED_0289 PF04545 Sigma-70, region 4 AMED_0291 PF02467 AMED_0291 AMED_0292 PF13466 STAS domain AMED_0293 PF04307 AMED_0293 AMED_0295 PF05977 Transmembrane secretion effector AMED_0299 PF00005 ABC transporter AMED_0300 PF12802 MarR family AMED_0301 PF00440 Bacterial regulatory proteins, tetR family AMED_0302 PF13460 NADH(P)-binding AMED_0303 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_0304 PF04542 Sigma-70 region 2 AMED_0306 PF01522 Polysaccharide deacetylase AMED_0307 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_0308 PF13515 AMED_0308 AMED_0309 PF14013 AMED_0309 AMED_0310 PF02153 Prephenate dehydrogenase AMED_0311 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMED_0311 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_0312 PF03551 Transcriptional regulator PadR-like family AMED_0312 PF10400 Virulence activator alpha C-term AMED_0313 PF01734 Patatin-like phospholipase AMED_0314 PF04672 S-adenosyl methyltransferase AMED_0315 PF01047 MarR family AMED_0316 PF07859 alpha/beta hydrolase fold AMED_0317 PF00756 Putative esterase AMED_0319 PF14325 AMED_0319 AMED_0320 PF03640 AMED_0320 AMED_0321 PF00206 Lyase AMED_0321 PF10397 Adenylosuccinate lyase C-terminus AMED_0322 PF06736 AMED_0322 AMED_0323 PF04978 Protein of unknown function (DUF664) AMED_0325 PF13671 AAA domain AMED_0328 PF13641 Glycosyltransferase like family 2 AMED_0330 PF00300 Histidine phosphatase superfamily (branch 1) AMED_0331 PF05426 Alginate lyase AMED_0332 PF05426 Alginate lyase AMED_0332 PF13358 DDE superfamily endonuclease AMED_0332 PF13565 AMED_0332 AMED_0333 PF00089 Trypsin AMED_0336 PF00069 Protein kinase domain AMED_0337 PF13279 Thioesterase-like superfamily AMED_0338 PF00465 Iron-containing alcohol dehydrogenase AMED_0339 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_0339 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_0339 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_0341 PF00313 'Cold-shock' DNA-binding domain AMED_0342 PF00403 Heavy-metal-associated domain AMED_0343 PF01513 ATP-NAD kinase AMED_0344 PF00676 Dehydrogenase E1 component AMED_0345 PF01590 GAF domain AMED_0347 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_0348 PF00069 Protein kinase domain AMED_0348 PF16919 AMED_0348 AMED_0351 PF00589 Phage integrase family AMED_0352 PF12728 Helix-turn-helix domain AMED_0353 PF12307 AMED_0353 AMED_0354 PF00145 C-5 cytosine-specific DNA methylase AMED_0358 PF09250 Bifunctional DNA primase/polymerase, N-terminal AMED_0360 PF00436 Single-strand binding protein family AMED_0370 PF04686 Streptomyces sporulation and cell division protein, SsgA AMED_0371 PF00293 NUDIX domain AMED_0379 PF08241 Methyltransferase domain AMED_0380 PF03795 YCII-related domain AMED_0381 PF00797 N-acetyltransferase AMED_0382 PF00563 EAL domain AMED_0382 PF00990 GGDEF domain AMED_0382 PF13188 PAS domain AMED_0382 PF13426 PAS domain AMED_0385 PF12900 Pyridoxamine 5'-phosphate oxidase AMED_0386 PF00440 Bacterial regulatory proteins, tetR family AMED_0386 PF16859 AMED_0386 AMED_0387 PF00860 Permease family AMED_0388 PF01717 Cobalamin-independent synthase, Catalytic domain AMED_0389 PF07978 NIPSNAP AMED_0390 PF01614 Bacterial transcriptional regulator AMED_0390 PF09339 IclR helix-turn-helix domain AMED_0391 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_0391 PF14759 Reductase C-terminal AMED_0392 PF01494 FAD binding domain AMED_0393 PF02861 Clp amino terminal domain AMED_0394 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMED_0394 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_0395 PF00753 Metallo-beta-lactamase superfamily AMED_0396 PF13560 Helix-turn-helix domain AMED_0397 PF04672 S-adenosyl methyltransferase AMED_0398 PF04672 S-adenosyl methyltransferase AMED_0399 PF13649 Methyltransferase domain AMED_0401 PF04149 AMED_0401 AMED_0404 PF13115 AMED_0404 AMED_0406 PF00561 alpha/beta hydrolase fold AMED_0407 PF07336 Protein of unknown function (DUF1470) AMED_0407 PF11706 CGNR zinc finger AMED_0408 PF09995 AMED_0408 AMED_0409 PF00440 Bacterial regulatory proteins, tetR family AMED_0410 PF01425 Amidase AMED_0411 PF01872 RibD C-terminal domain AMED_0412 PF00291 Pyridoxal-phosphate dependent enzyme AMED_0413 PF13672 Protein phosphatase 2C AMED_0414 PF08281 Sigma-70, region 4 AMED_0415 PF02861 Clp amino terminal domain AMED_0417 PF00155 Aminotransferase class I and II AMED_0417 PF00392 Bacterial regulatory proteins, gntR family AMED_0419 PF00155 Aminotransferase class I and II AMED_0420 PF04286 AMED_0420 AMED_0421 PF07336 Protein of unknown function (DUF1470) AMED_0421 PF11706 CGNR zinc finger AMED_0423 PF13453 AMED_0423 AMED_0425 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMED_0426 PF01381 Helix-turn-helix AMED_0428 PF10724 AMED_0428 AMED_0429 PF04073 Aminoacyl-tRNA editing domain AMED_0430 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMED_0431 PF00221 Aromatic amino acid lyase AMED_0433 PF03596 AMED_0433 AMED_0434 PF13539 D-alanyl-D-alanine carboxypeptidase AMED_0435 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0436 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0437 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMED_0438 PF08241 Methyltransferase domain AMED_0439 PF01047 MarR family AMED_0440 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_0441 PF00107 Zinc-binding dehydrogenase AMED_0441 PF16884 AMED_0441 AMED_0442 PF00702 haloacid dehalogenase-like hydrolase AMED_0443 PF00440 Bacterial regulatory proteins, tetR family AMED_0444 PF00107 Zinc-binding dehydrogenase AMED_0444 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0445 PF00551 Formyl transferase AMED_0446 PF07398 AMED_0446 AMED_0446 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_0447 PF09335 AMED_0447 AMED_0449 PF10698 AMED_0449 AMED_0450 PF01565 FAD binding domain AMED_0450 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMED_0451 PF03734 L,D-transpeptidase catalytic domain AMED_0452 PF12697 Alpha/beta hydrolase family AMED_0453 PF00534 Glycosyl transferases group 1 AMED_0453 PF13439 Glycosyltransferase Family 4 AMED_0454 PF10722 Putative bacterial sensory transduction regulator AMED_0455 PF14257 AMED_0455 AMED_0456 PF00300 Histidine phosphatase superfamily (branch 1) AMED_0458 PF00248 Aldo/keto reductase family AMED_0459 PF00512 His Kinase A (phospho-acceptor) domain AMED_0459 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0460 PF00072 Response regulator receiver domain AMED_0460 PF00486 Transcriptional regulatory protein, C terminal AMED_0461 PF02541 Ppx/GppA phosphatase family AMED_0464 PF01261 Xylose isomerase-like TIM barrel AMED_0465 PF13622 Thioesterase-like superfamily AMED_0466 PF03807 NADP oxidoreductase coenzyme F420-dependent AMED_0466 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMED_0467 PF12728 Helix-turn-helix domain AMED_0468 PF01370 NAD dependent epimerase/dehydratase family AMED_0469 PF01553 Acyltransferase AMED_0470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0470 PF07730 Histidine kinase AMED_0470 PF13796 AMED_0470 AMED_0471 PF00072 Response regulator receiver domain AMED_0471 PF00196 Bacterial regulatory proteins, luxR family AMED_0472 PF02517 CAAX protease self-immunity AMED_0473 PF12710 haloacid dehalogenase-like hydrolase AMED_0475 PF04542 Sigma-70 region 2 AMED_0475 PF08281 Sigma-70, region 4 AMED_0476 PF00501 AMP-binding enzyme AMED_0476 PF13193 AMP-binding enzyme C-terminal domain AMED_0477 PF05768 Glutaredoxin-like domain (DUF836) AMED_0478 PF00174 Oxidoreductase molybdopterin binding domain AMED_0479 PF02629 CoA binding domain AMED_0479 PF06971 Putative DNA-binding protein N-terminus AMED_0480 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMED_0480 PF01488 Shikimate / quinate 5-dehydrogenase AMED_0480 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMED_0481 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMED_0481 PF03900 Porphobilinogen deaminase, C-terminal domain AMED_0482 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_0482 PF02602 Uroporphyrinogen-III synthase HemD AMED_0483 PF01370 NAD dependent epimerase/dehydratase family AMED_0484 PF12833 Helix-turn-helix domain AMED_0485 PF00490 Delta-aminolevulinic acid dehydratase AMED_0489 PF13437 HlyD family secretion protein AMED_0489 PF13533 Biotin-lipoyl like AMED_0490 PF00005 ABC transporter AMED_0491 PF02687 AMED_0491 AMED_0491 PF12704 MacB-like periplasmic core domain AMED_0493 PF03073 TspO/MBR family AMED_0494 PF00202 Aminotransferase class-III AMED_0495 PF00300 Histidine phosphatase superfamily (branch 1) AMED_0496 PF00578 AhpC/TSA family AMED_0497 PF02683 AMED_0497 AMED_0498 PF05140 AMED_0498 AMED_0499 PF01578 AMED_0499 AMED_0500 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_0502 PF12728 Helix-turn-helix domain AMED_0503 PF01037 AsnC family AMED_0503 PF13404 AsnC-type helix-turn-helix domain AMED_0504 PF14012 AMED_0504 AMED_0505 PF00291 Pyridoxal-phosphate dependent enzyme AMED_0506 PF01040 UbiA prenyltransferase family AMED_0508 PF00501 AMP-binding enzyme AMED_0508 PF13193 AMP-binding enzyme C-terminal domain AMED_0509 PF00378 Enoyl-CoA hydratase/isomerase family AMED_0510 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_0510 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_0511 PF01433 Peptidase family M1 AMED_0513 PF00459 Inositol monophosphatase family AMED_0514 PF00534 Glycosyl transferases group 1 AMED_0514 PF13439 Glycosyltransferase Family 4 AMED_0515 PF00534 Glycosyl transferases group 1 AMED_0515 PF13579 Glycosyl transferase 4-like domain AMED_0516 PF00486 Transcriptional regulatory protein, C terminal AMED_0516 PF03704 Bacterial transcriptional activator domain AMED_0518 PF01209 ubiE/COQ5 methyltransferase family AMED_0519 PF01494 FAD binding domain AMED_0520 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMED_0521 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMED_0522 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMED_0523 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMED_0524 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMED_0525 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMED_0525 PF10531 SLBB domain AMED_0525 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMED_0526 PF00384 Molybdopterin oxidoreductase AMED_0526 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMED_0526 PF13510 2Fe-2S iron-sulfur cluster binding domain AMED_0527 PF00146 NADH dehydrogenase AMED_0528 PF12838 4Fe-4S dicluster domain AMED_0529 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMED_0530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMED_0531 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMED_0531 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMED_0532 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMED_0533 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AMED_0534 PF14011 EspG family AMED_0537 PF00348 Polyprenyl synthetase AMED_0540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_0541 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMED_0541 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMED_0542 PF00378 Enoyl-CoA hydratase/isomerase family AMED_0543 PF01037 AsnC family AMED_0543 PF13404 AsnC-type helix-turn-helix domain AMED_0544 PF02274 Amidinotransferase AMED_0545 PF01522 Polysaccharide deacetylase AMED_0546 PF07335 AMED_0546 AMED_0547 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMED_0547 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMED_0547 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMED_0548 PF13579 Glycosyl transferase 4-like domain AMED_0548 PF13692 Glycosyl transferases group 1 AMED_0550 PF02706 Chain length determinant protein AMED_0551 PF00733 Asparagine synthase AMED_0551 PF13537 Glutamine amidotransferase domain AMED_0552 PF00107 Zinc-binding dehydrogenase AMED_0552 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_0553 PF07940 Heparinase II/III-like protein AMED_0553 PF16889 AMED_0553 AMED_0554 PF13229 Right handed beta helix region AMED_0556 PF00534 Glycosyl transferases group 1 AMED_0556 PF13439 Glycosyltransferase Family 4 AMED_0557 PF01569 PAP2 superfamily AMED_0558 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_0559 PF13229 Right handed beta helix region AMED_0560 PF00202 Aminotransferase class-III AMED_0561 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMED_0562 PF04230 AMED_0562 AMED_0563 PF00535 Glycosyl transferase family 2 AMED_0565 PF09940 Domain of unknown function (DUF2172) AMED_0565 PF16221 AMED_0565 AMED_0565 PF16254 AMED_0565 AMED_0566 PF01370 NAD dependent epimerase/dehydratase family AMED_0567 PF02585 GlcNAc-PI de-N-acetylase AMED_0569 PF08421 Putative zinc binding domain AMED_0569 PF08484 C-methyltransferase C-terminal domain AMED_0569 PF13489 Methyltransferase domain AMED_0570 PF10823 AMED_0570 AMED_0571 PF00296 Luciferase-like monooxygenase AMED_0573 PF01435 Peptidase family M48 AMED_0574 PF00296 Luciferase-like monooxygenase AMED_0575 PF00296 Luciferase-like monooxygenase AMED_0576 PF00483 Nucleotidyl transferase AMED_0579 PF04461 Protein of unknown function (DUF520) AMED_0581 PF08241 Methyltransferase domain AMED_0582 PF00004 ATPase family associated with various cellular activities (AAA) AMED_0582 PF02190 ATP-dependent protease La (LON) domain AMED_0582 PF05362 Lon protease (S16) C-terminal proteolytic domain AMED_0583 PF04672 S-adenosyl methyltransferase AMED_0584 PF00583 Acetyltransferase (GNAT) family AMED_0585 PF00563 EAL domain AMED_0585 PF00990 GGDEF domain AMED_0585 PF01590 GAF domain AMED_0586 PF00471 Ribosomal protein L33 AMED_0587 PF13452 N-terminal half of MaoC dehydratase AMED_0588 PF01575 MaoC like domain AMED_0589 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_0591 PF00392 Bacterial regulatory proteins, gntR family AMED_0592 PF00296 Luciferase-like monooxygenase AMED_0593 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMED_0594 PF02357 Transcription termination factor nusG AMED_0595 PF00298 Ribosomal protein L11, RNA binding domain AMED_0595 PF03946 Ribosomal protein L11, N-terminal domain AMED_0596 PF00687 Ribosomal protein L1p/L10e family AMED_0597 PF00561 alpha/beta hydrolase fold AMED_0599 PF00466 Ribosomal protein L10 AMED_0600 PF00542 Ribosomal protein L7/L12 C-terminal domain AMED_0600 PF16320 AMED_0600 AMED_0601 PF00005 ABC transporter AMED_0602 PF02405 AMED_0602 AMED_0603 PF02405 AMED_0603 AMED_0604 PF02470 AMED_0604 AMED_0604 PF11887 AMED_0604 AMED_0605 PF02470 AMED_0605 AMED_0606 PF02470 AMED_0606 AMED_0607 PF02470 AMED_0607 AMED_0608 PF02470 AMED_0608 AMED_0608 PF11887 AMED_0608 AMED_0609 PF02470 AMED_0609 AMED_0613 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_0613 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_0616 PF00067 Cytochrome P450 AMED_0617 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0617 PF00501 AMP-binding enzyme AMED_0617 PF00550 Phosphopantetheine attachment site AMED_0617 PF00698 Acyl transferase domain AMED_0617 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0617 PF08659 KR domain AMED_0617 PF13193 AMP-binding enzyme C-terminal domain AMED_0617 PF16197 AMED_0617 AMED_0618 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0618 PF00550 Phosphopantetheine attachment site AMED_0618 PF00698 Acyl transferase domain AMED_0618 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0618 PF08659 KR domain AMED_0618 PF14765 Polyketide synthase dehydratase AMED_0618 PF16197 AMED_0618 AMED_0619 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0619 PF00550 Phosphopantetheine attachment site AMED_0619 PF00698 Acyl transferase domain AMED_0619 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0619 PF08659 KR domain AMED_0619 PF14765 Polyketide synthase dehydratase AMED_0619 PF16197 AMED_0619 AMED_0620 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0620 PF00550 Phosphopantetheine attachment site AMED_0620 PF00698 Acyl transferase domain AMED_0620 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0620 PF08659 KR domain AMED_0620 PF08990 Erythronolide synthase docking AMED_0620 PF14765 Polyketide synthase dehydratase AMED_0620 PF16197 AMED_0620 AMED_0621 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_0621 PF00550 Phosphopantetheine attachment site AMED_0621 PF00698 Acyl transferase domain AMED_0621 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_0621 PF08659 KR domain AMED_0621 PF08990 Erythronolide synthase docking AMED_0621 PF14765 Polyketide synthase dehydratase AMED_0621 PF16197 AMED_0621 AMED_0622 PF00797 N-acetyltransferase AMED_0624 PF01761 3-dehydroquinate synthase AMED_0625 PF01474 Class-II DAHP synthetase family AMED_0626 PF08501 Shikimate dehydrogenase substrate binding domain AMED_0627 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMED_0628 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_0628 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_0629 PF13419 Haloacid dehalogenase-like hydrolase AMED_0630 PF00480 ROK family AMED_0631 PF02585 GlcNAc-PI de-N-acetylase AMED_0632 PF07859 alpha/beta hydrolase fold AMED_0633 PF07690 Major Facilitator Superfamily AMED_0634 PF00440 Bacterial regulatory proteins, tetR family AMED_0634 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_0635 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_0636 PF00067 Cytochrome P450 AMED_0637 PF00067 Cytochrome P450 AMED_0638 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMED_0639 PF06722 Protein of unknown function (DUF1205) AMED_0640 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMED_0641 PF00202 Aminotransferase class-III AMED_0642 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_0643 PF00296 Luciferase-like monooxygenase AMED_0644 PF00296 Luciferase-like monooxygenase AMED_0645 PF03559 NDP-hexose 2,3-dehydratase AMED_0646 PF01494 FAD binding domain AMED_0647 PF16911 AMED_0647 AMED_0648 PF00975 Thioesterase domain AMED_0649 PF00067 Cytochrome P450 AMED_0650 PF08241 Methyltransferase domain AMED_0651 PF00456 Transketolase, thiamine diphosphate binding domain AMED_0652 PF02779 Transketolase, pyrimidine binding domain AMED_0653 PF00067 Cytochrome P450 AMED_0654 PF01220 Dehydroquinase class II AMED_0655 PF00196 Bacterial regulatory proteins, luxR family AMED_0656 PF00562 RNA polymerase Rpb2, domain 6 AMED_0656 PF04560 RNA polymerase Rpb2, domain 7 AMED_0656 PF04561 RNA polymerase Rpb2, domain 2 AMED_0656 PF04563 RNA polymerase beta subunit AMED_0656 PF04565 RNA polymerase Rpb2, domain 3 AMED_0656 PF10385 RNA polymerase beta subunit external 1 domain AMED_0657 PF00623 RNA polymerase Rpb1, domain 2 AMED_0657 PF04983 RNA polymerase Rpb1, domain 3 AMED_0657 PF04997 RNA polymerase Rpb1, domain 1 AMED_0657 PF04998 RNA polymerase Rpb1, domain 5 AMED_0657 PF05000 RNA polymerase Rpb1, domain 4 AMED_0659 PF01427 D-ala-D-ala dipeptidase AMED_0660 PF01037 AsnC family AMED_0660 PF13404 AsnC-type helix-turn-helix domain AMED_0661 PF07690 Major Facilitator Superfamily AMED_0663 PF00027 Cyclic nucleotide-binding domain AMED_0663 PF13545 Crp-like helix-turn-helix domain AMED_0667 PF14362 AMED_0667 AMED_0672 PF00164 Ribosomal protein S12/S23 AMED_0673 PF00177 Ribosomal protein S7p/S5e AMED_0674 PF00009 Elongation factor Tu GTP binding domain AMED_0674 PF00679 Elongation factor G C-terminus AMED_0674 PF03144 Elongation factor Tu domain 2 AMED_0674 PF03764 Elongation factor G, domain IV AMED_0674 PF14492 Elongation Factor G, domain II AMED_0675 PF00009 Elongation factor Tu GTP binding domain AMED_0675 PF03143 Elongation factor Tu C-terminal domain AMED_0675 PF03144 Elongation factor Tu domain 2 AMED_0676 PF00338 Ribosomal protein S10p/S20e AMED_0677 PF00297 Ribosomal protein L3 AMED_0678 PF00573 Ribosomal protein L4/L1 family AMED_0679 PF00276 Ribosomal protein L23 AMED_0680 PF00181 Ribosomal Proteins L2, RNA binding domain AMED_0680 PF03947 Ribosomal Proteins L2, C-terminal domain AMED_0681 PF00203 Ribosomal protein S19 AMED_0682 PF00237 Ribosomal protein L22p/L17e AMED_0683 PF00189 Ribosomal protein S3, C-terminal domain AMED_0683 PF07650 KH domain AMED_0684 PF00252 Ribosomal protein L16p/L10e AMED_0685 PF00831 Ribosomal L29 protein AMED_0686 PF00366 Ribosomal protein S17 AMED_0687 PF00238 Ribosomal protein L14p/L23e AMED_0688 PF00467 KOW motif AMED_0688 PF17136 AMED_0688 AMED_0689 PF00281 Ribosomal protein L5 AMED_0689 PF00673 ribosomal L5P family C-terminus AMED_0690 PF00253 Ribosomal protein S14p/S29e AMED_0691 PF00410 Ribosomal protein S8 AMED_0692 PF00347 Ribosomal protein L6 AMED_0693 PF00861 Ribosomal L18p/L5e family AMED_0694 PF00333 Ribosomal protein S5, N-terminal domain AMED_0694 PF03719 Ribosomal protein S5, C-terminal domain AMED_0695 PF00327 Ribosomal protein L30p/L7e AMED_0696 PF00828 Ribosomal protein L18e/L15 AMED_0698 PF01810 AMED_0698 AMED_0699 PF00344 SecY translocase AMED_0700 PF00406 Adenylate kinase AMED_0701 PF00557 Metallopeptidase family M24 AMED_0702 PF01176 Translation initiation factor 1A / IF-1 AMED_0703 PF00444 Ribosomal protein L36 AMED_0704 PF00416 Ribosomal protein S13/S18 AMED_0706 PF00411 Ribosomal protein S11 AMED_0707 PF00163 Ribosomal protein S4/S9 N-terminal domain AMED_0707 PF01479 S4 domain AMED_0708 PF01000 RNA polymerase Rpb3/RpoA insert domain AMED_0708 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMED_0708 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMED_0709 PF01196 Ribosomal protein L17 AMED_0710 PF01416 tRNA pseudouridine synthase AMED_0712 PF11203 AMED_0712 AMED_0714 PF05108 Protein of unknown function (DUF690) AMED_0717 PF00082 Subtilase family AMED_0718 PF08817 WXG100 protein secretion system (Wss), protein YukD AMED_0719 PF01580 FtsK/SpoIIIE family AMED_0720 PF00012 Hsp70 protein AMED_0722 PF06013 Proteins of 100 residues with WXG AMED_0723 PF06013 Proteins of 100 residues with WXG AMED_0724 PF14230 AMED_0724 AMED_0726 PF00572 Ribosomal protein L13 AMED_0727 PF00380 Ribosomal protein S9/S16 AMED_0728 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMED_0728 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMED_0728 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMED_0728 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMED_0730 PF00501 AMP-binding enzyme AMED_0731 PF00550 Phosphopantetheine attachment site AMED_0735 PF12740 Chlorophyllase enzyme AMED_0736 PF01380 SIS domain AMED_0736 PF13522 Glutamine amidotransferase domain AMED_0737 PF01256 Carbohydrate kinase AMED_0737 PF03853 YjeF-related protein N-terminus AMED_0738 PF00455 AMED_0738 AMED_0738 PF08220 DeoR-like helix-turn-helix domain AMED_0739 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_0739 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_0740 PF00005 ABC transporter AMED_0740 PF08402 TOBE domain AMED_0741 PF00842 Alanine racemase, C-terminal domain AMED_0741 PF01168 Alanine racemase, N-terminal domain AMED_0742 PF12697 Alpha/beta hydrolase family AMED_0743 PF02367 Uncharacterised P-loop hydrolase UPF0079 AMED_0744 PF13354 Beta-lactamase enzyme family AMED_0745 PF01039 Carboxyl transferase domain AMED_0745 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMED_0746 PF00501 AMP-binding enzyme AMED_0746 PF13193 AMP-binding enzyme C-terminal domain AMED_0747 PF00814 Glycoprotease family AMED_0748 PF00583 Acetyltransferase (GNAT) family AMED_0749 PF00814 Glycoprotease family AMED_0750 PF02350 UDP-N-acetylglucosamine 2-epimerase AMED_0753 PF09721 AMED_0753 AMED_0754 PF13641 Glycosyltransferase like family 2 AMED_0755 PF01510 N-acetylmuramoyl-L-alanine amidase AMED_0756 PF13847 Methyltransferase domain AMED_0757 PF01022 Bacterial regulatory protein, arsR family AMED_0758 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMED_0759 PF01758 Sodium Bile acid symporter family AMED_0760 PF01022 Bacterial regulatory protein, arsR family AMED_0761 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_0762 PF00166 Chaperonin 10 Kd subunit AMED_0763 PF00118 TCP-1/cpn60 chaperonin family AMED_0764 PF02467 AMED_0764 AMED_0765 PF13411 MerR HTH family regulatory protein AMED_0767 PF00072 Response regulator receiver domain AMED_0767 PF00196 Bacterial regulatory proteins, luxR family AMED_0768 PF04545 Sigma-70, region 4 AMED_0769 PF16751 AMED_0769 AMED_0771 PF00478 IMP dehydrogenase / GMP reductase domain AMED_0771 PF00571 CBS domain AMED_0773 PF00478 IMP dehydrogenase / GMP reductase domain AMED_0774 PF04149 AMED_0774 AMED_0775 PF00732 GMC oxidoreductase AMED_0775 PF05199 GMC oxidoreductase AMED_0776 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_0777 PF01565 FAD binding domain AMED_0777 PF08031 Berberine and berberine like AMED_0778 PF00171 Aldehyde dehydrogenase family AMED_0779 PF00107 Zinc-binding dehydrogenase AMED_0779 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0780 PF01694 Rhomboid family AMED_0781 PF12867 DinB superfamily AMED_0782 PF00117 Glutamine amidotransferase class-I AMED_0782 PF00958 GMP synthase C terminal domain AMED_0782 PF02540 NAD synthase AMED_0784 PF04024 AMED_0784 AMED_0784 PF09922 Cell wall-active antibiotics response protein (DUF2154) AMED_0785 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_0787 PF04024 AMED_0787 AMED_0787 PF13581 Histidine kinase-like ATPase domain AMED_0788 PF00072 Response regulator receiver domain AMED_0788 PF00196 Bacterial regulatory proteins, luxR family AMED_0789 PF00892 EamA-like transporter family AMED_0790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_0790 PF03466 LysR substrate binding domain AMED_0791 PF00069 Protein kinase domain AMED_0792 PF00069 Protein kinase domain AMED_0796 PF01817 Chorismate mutase type II AMED_0797 PF08044 AMED_0797 AMED_0798 PF00580 UvrD/REP helicase N-terminal domain AMED_0798 PF13361 UvrD-like helicase C-terminal domain AMED_0799 PF01551 Peptidase family M23 AMED_0802 PF00549 CoA-ligase AMED_0802 PF08442 ATP-grasp domain AMED_0803 PF00549 CoA-ligase AMED_0803 PF02629 CoA binding domain AMED_0806 PF00551 Formyl transferase AMED_0807 PF01808 AICARFT/IMPCHase bienzyme AMED_0807 PF02142 MGS-like domain AMED_0810 PF00583 Acetyltransferase (GNAT) family AMED_0811 PF01966 HD domain AMED_0813 PF00817 impB/mucB/samB family AMED_0815 PF02811 PHP domain AMED_0815 PF07733 Bacterial DNA polymerase III alpha subunit AMED_0815 PF14579 Helix-hairpin-helix motif AMED_0816 PF13649 Methyltransferase domain AMED_0817 PF00805 Pentapeptide repeats (8 copies) AMED_0817 PF13599 Pentapeptide repeats (9 copies) AMED_0818 PF14021 AMED_0818 AMED_0819 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMED_0819 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMED_0820 PF11222 AMED_0820 AMED_0821 PF07690 Major Facilitator Superfamily AMED_0822 PF12840 Helix-turn-helix domain AMED_0823 PF07690 Major Facilitator Superfamily AMED_0824 PF08940 Domain of unknown function (DUF1918) AMED_0825 PF00588 SpoU rRNA Methylase family AMED_0826 PF00730 HhH-GPD superfamily base excision DNA repair protein AMED_0827 PF02311 AraC-like ligand binding domain AMED_0827 PF12833 Helix-turn-helix domain AMED_0828 PF09391 Protein of unknown function (DUF2000) AMED_0830 PF08241 Methyltransferase domain AMED_0831 PF09969 AMED_0831 AMED_0833 PF00180 Isocitrate/isopropylmalate dehydrogenase AMED_0836 PF00440 Bacterial regulatory proteins, tetR family AMED_0837 PF12706 Beta-lactamase superfamily domain AMED_0838 PF03372 Endonuclease/Exonuclease/phosphatase family AMED_0840 PF00579 tRNA synthetases class I (W and Y) AMED_0841 PF13671 AAA domain AMED_0842 PF03631 AMED_0842 AMED_0843 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_0844 PF01638 HxlR-like helix-turn-helix AMED_0845 PF00768 D-alanyl-D-alanine carboxypeptidase AMED_0847 PF00082 Subtilase family AMED_0849 PF13085 2Fe-2S iron-sulfur cluster binding domain AMED_0849 PF13183 4Fe-4S dicluster domain AMED_0850 PF00890 FAD binding domain AMED_0850 PF02910 Fumarate reductase flavoprotein C-term AMED_0851 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMED_0852 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMED_0853 PF08305 NPCBM/NEW2 domain AMED_0853 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AMED_0853 PF16499 AMED_0853 AMED_0854 PF10566 Glycoside hydrolase 97 AMED_0854 PF14508 Glycosyl-hydrolase 97 N-terminal AMED_0854 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMED_0855 PF02608 Basic membrane protein AMED_0856 PF00005 ABC transporter AMED_0857 PF02653 AMED_0857 AMED_0858 PF02653 AMED_0858 AMED_0859 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMED_0860 PF00591 Glycosyl transferase family, a/b domain AMED_0860 PF02885 Glycosyl transferase family, helical bundle domain AMED_0860 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AMED_0862 PF00962 Adenosine/AMP deaminase AMED_0863 PF07690 Major Facilitator Superfamily AMED_0865 PF00270 DEAD/DEAH box helicase AMED_0865 PF00271 Helicase conserved C-terminal domain AMED_0865 PF12029 AMED_0865 AMED_0867 PF03807 NADP oxidoreductase coenzyme F420-dependent AMED_0868 PF01638 HxlR-like helix-turn-helix AMED_0869 PF04198 Putative sugar-binding domain AMED_0870 PF00107 Zinc-binding dehydrogenase AMED_0870 PF08240 Alcohol dehydrogenase GroES-like domain AMED_0871 PF01547 Bacterial extracellular solute-binding protein AMED_0872 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0873 PF00528 Binding-protein-dependent transport system inner membrane component AMED_0874 PF06902 Divergent 4Fe-4S mono-cluster AMED_0875 PF00067 Cytochrome P450 AMED_0876 PF00067 Cytochrome P450 AMED_0877 PF00440 Bacterial regulatory proteins, tetR family AMED_0879 PF01670 Glycosyl hydrolase family 12 AMED_0880 PF00171 Aldehyde dehydrogenase family AMED_0881 PF00171 Aldehyde dehydrogenase family AMED_0882 PF01791 DeoC/LacD family aldolase AMED_0883 PF08044 AMED_0883 AMED_0883 PF09922 Cell wall-active antibiotics response protein (DUF2154) AMED_0884 PF00102 Protein-tyrosine phosphatase AMED_0885 PF14681 Uracil phosphoribosyltransferase AMED_0886 PF00805 Pentapeptide repeats (8 copies) AMED_0887 PF04542 Sigma-70 region 2 AMED_0887 PF08281 Sigma-70, region 4 AMED_0889 PF00440 Bacterial regulatory proteins, tetR family AMED_0889 PF13305 WHG domain AMED_0890 PF13411 MerR HTH family regulatory protein AMED_0891 PF00248 Aldo/keto reductase family AMED_0892 PF13738 Pyridine nucleotide-disulphide oxidoreductase AMED_0893 PF01070 FMN-dependent dehydrogenase AMED_0895 PF00999 Sodium/hydrogen exchanger family AMED_0896 PF00072 Response regulator receiver domain AMED_0896 PF00486 Transcriptional regulatory protein, C terminal AMED_0897 PF00512 His Kinase A (phospho-acceptor) domain AMED_0897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0899 PF03129 Anticodon binding domain AMED_0899 PF13393 Histidyl-tRNA synthetase AMED_0901 PF01979 Amidohydrolase family AMED_0905 PF03358 NADPH-dependent FMN reductase AMED_0906 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMED_0906 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMED_0906 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMED_0906 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMED_0907 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMED_0908 PF01048 Phosphorylase superfamily AMED_0909 PF14108 AMED_0909 AMED_0911 PF13411 MerR HTH family regulatory protein AMED_0912 PF00069 Protein kinase domain AMED_0913 PF01642 Methylmalonyl-CoA mutase AMED_0914 PF01642 Methylmalonyl-CoA mutase AMED_0914 PF02310 B12 binding domain AMED_0915 PF03308 ArgK protein AMED_0917 PF01546 Peptidase family M20/M25/M40 AMED_0919 PF13772 AIG2-like family AMED_0920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_0920 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_0923 PF04203 Sortase family AMED_0924 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_0925 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_0925 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_0926 PF00230 Major intrinsic protein AMED_0927 PF01266 FAD dependent oxidoreductase AMED_0927 PF16901 AMED_0927 AMED_0928 PF00440 Bacterial regulatory proteins, tetR family AMED_0929 PF01370 NAD dependent epimerase/dehydratase family AMED_0930 PF13302 Acetyltransferase (GNAT) domain AMED_0932 PF08044 AMED_0932 AMED_0933 PF08044 AMED_0933 AMED_0934 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMED_0934 PF00364 Biotin-requiring enzyme AMED_0934 PF02785 Biotin carboxylase C-terminal domain AMED_0934 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_0935 PF07179 AMED_0935 AMED_0937 PF00375 Sodium:dicarboxylate symporter family AMED_0938 PF02545 Maf-like protein AMED_0939 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_0939 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_0940 PF07690 Major Facilitator Superfamily AMED_0941 PF03551 Transcriptional regulator PadR-like family AMED_0942 PF05731 TROVE domain AMED_0943 PF00296 Luciferase-like monooxygenase AMED_0944 PF12802 MarR family AMED_0945 PF13822 AMED_0945 AMED_0946 PF01039 Carboxyl transferase domain AMED_0947 PF13673 Acetyltransferase (GNAT) domain AMED_0948 PF00072 Response regulator receiver domain AMED_0948 PF00196 Bacterial regulatory proteins, luxR family AMED_0949 PF07730 Histidine kinase AMED_0950 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_0951 PF12802 MarR family AMED_0952 PF03358 NADPH-dependent FMN reductase AMED_0953 PF00440 Bacterial regulatory proteins, tetR family AMED_0954 PF01494 FAD binding domain AMED_0955 PF01638 HxlR-like helix-turn-helix AMED_0956 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_0957 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_0958 PF01965 DJ-1/PfpI family AMED_0958 PF12833 Helix-turn-helix domain AMED_0959 PF01841 Transglutaminase-like superfamily AMED_0960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_0960 PF03466 LysR substrate binding domain AMED_0961 PF12680 SnoaL-like domain AMED_0962 PF00440 Bacterial regulatory proteins, tetR family AMED_0963 PF08241 Methyltransferase domain AMED_0964 PF01872 RibD C-terminal domain AMED_0965 PF04542 Sigma-70 region 2 AMED_0966 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMED_0970 PF07730 Histidine kinase AMED_0971 PF00072 Response regulator receiver domain AMED_0971 PF00196 Bacterial regulatory proteins, luxR family AMED_0972 PF00877 NlpC/P60 family AMED_0973 PF02237 Biotin protein ligase C terminal domain AMED_0973 PF03099 Biotin/lipoate A/B protein ligase family AMED_0974 PF03703 AMED_0974 AMED_0975 PF00682 HMGL-like AMED_0976 PF14021 AMED_0976 AMED_0978 PF07971 Glycosyl hydrolase family 92 AMED_0979 PF00459 Inositol monophosphatase family AMED_0980 PF00072 Response regulator receiver domain AMED_0980 PF00486 Transcriptional regulatory protein, C terminal AMED_0981 PF00672 HAMP domain AMED_0981 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_0982 PF00196 Bacterial regulatory proteins, luxR family AMED_0983 PF00072 Response regulator receiver domain AMED_0983 PF00196 Bacterial regulatory proteins, luxR family AMED_0984 PF13460 NADH(P)-binding AMED_0985 PF07690 Major Facilitator Superfamily AMED_0986 PF04138 AMED_0986 AMED_0987 PF04138 AMED_0987 AMED_0988 PF04542 Sigma-70 region 2 AMED_0988 PF13490 Putative zinc-finger AMED_0990 PF09594 AMED_0990 AMED_0991 PF09594 AMED_0991 AMED_0992 PF02222 ATP-grasp domain AMED_0993 PF00731 AIR carboxylase AMED_0996 PF00501 AMP-binding enzyme AMED_0996 PF13193 AMP-binding enzyme C-terminal domain AMED_0997 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_0997 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_0997 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_0999 PF01674 Lipase (class 2) AMED_1001 PF06724 AMED_1001 AMED_1002 PF07681 AMED_1002 AMED_1004 PF13460 NADH(P)-binding AMED_1005 PF03816 Cell envelope-related transcriptional attenuator domain AMED_1006 PF03816 Cell envelope-related transcriptional attenuator domain AMED_1006 PF13399 LytR cell envelope-related transcriptional attenuator AMED_1007 PF16363 AMED_1007 AMED_1008 PF04321 RmlD substrate binding domain AMED_1009 PF13439 Glycosyltransferase Family 4 AMED_1009 PF13692 Glycosyl transferases group 1 AMED_1010 PF00534 Glycosyl transferases group 1 AMED_1010 PF13641 Glycosyltransferase like family 2 AMED_1011 PF00535 Glycosyl transferase family 2 AMED_1012 PF00534 Glycosyl transferases group 1 AMED_1012 PF13439 Glycosyltransferase Family 4 AMED_1013 PF00534 Glycosyl transferases group 1 AMED_1013 PF13439 Glycosyltransferase Family 4 AMED_1014 PF00535 Glycosyl transferase family 2 AMED_1016 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_1016 PF00483 Nucleotidyl transferase AMED_1019 PF00392 Bacterial regulatory proteins, gntR family AMED_1021 PF00293 NUDIX domain AMED_1022 PF00881 Nitroreductase family AMED_1022 PF01996 F420-0:Gamma-glutamyl ligase AMED_1023 PF01933 Uncharacterised protein family UPF0052 AMED_1024 PF00583 Acetyltransferase (GNAT) family AMED_1026 PF00037 4Fe-4S binding domain AMED_1027 PF00155 Aminotransferase class I and II AMED_1028 PF00440 Bacterial regulatory proteins, tetR family AMED_1029 PF01494 FAD binding domain AMED_1030 PF05235 CHAD domain AMED_1031 PF14602 Hexapeptide repeat of succinyl-transferase AMED_1031 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AMED_1033 PF01546 Peptidase family M20/M25/M40 AMED_1033 PF07687 Peptidase dimerisation domain AMED_1034 PF11350 AMED_1034 AMED_1035 PF00704 Glycosyl hydrolases family 18 AMED_1036 PF01483 Proprotein convertase P-domain AMED_1036 PF04389 Peptidase family M28 AMED_1037 PF01447 Thermolysin metallopeptidase, catalytic domain AMED_1037 PF01483 Proprotein convertase P-domain AMED_1037 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMED_1037 PF03413 Peptidase propeptide and YPEB domain AMED_1038 PF13560 Helix-turn-helix domain AMED_1039 PF01447 Thermolysin metallopeptidase, catalytic domain AMED_1039 PF02839 Carbohydrate binding domain AMED_1039 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMED_1039 PF03413 Peptidase propeptide and YPEB domain AMED_1039 PF07504 Fungalysin/Thermolysin Propeptide Motif AMED_1040 PF13424 Tetratricopeptide repeat AMED_1040 PF13560 Helix-turn-helix domain AMED_1041 PF03641 Possible lysine decarboxylase AMED_1042 PF03641 Possible lysine decarboxylase AMED_1044 PF00534 Glycosyl transferases group 1 AMED_1045 PF00535 Glycosyl transferase family 2 AMED_1047 PF01757 AMED_1047 AMED_1048 PF13578 Methyltransferase domain AMED_1049 PF01553 Acyltransferase AMED_1050 PF00535 Glycosyl transferase family 2 AMED_1051 PF00005 ABC transporter AMED_1052 PF00005 ABC transporter AMED_1052 PF00664 ABC transporter transmembrane region AMED_1053 PF02322 AMED_1053 AMED_1054 PF01654 AMED_1054 AMED_1055 PF03551 Transcriptional regulator PadR-like family AMED_1058 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_1059 PF03352 Methyladenine glycosylase AMED_1060 PF00378 Enoyl-CoA hydratase/isomerase family AMED_1061 PF11314 AMED_1061 AMED_1062 PF00883 Cytosol aminopeptidase family, catalytic domain AMED_1063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_1063 PF03466 LysR substrate binding domain AMED_1064 PF07690 Major Facilitator Superfamily AMED_1065 PF01609 Transposase DDE domain AMED_1065 PF13808 AMED_1065 AMED_1066 PF01596 O-methyltransferase AMED_1067 PF04542 Sigma-70 region 2 AMED_1067 PF08281 Sigma-70, region 4 AMED_1069 PF13180 PDZ domain AMED_1069 PF13365 Trypsin-like peptidase domain AMED_1070 PF02416 mttA/Hcf106 family AMED_1071 PF01883 Domain of unknown function DUF59 AMED_1071 PF10609 ParA/MinD ATPase like AMED_1072 PF06210 AMED_1072 AMED_1073 PF00571 CBS domain AMED_1073 PF03448 MgtE intracellular N domain AMED_1073 PF05239 PRC-barrel domain AMED_1074 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AMED_1075 PF01145 SPFH domain / Band 7 family AMED_1076 PF13828 AMED_1076 AMED_1077 PF13828 AMED_1077 AMED_1078 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_1078 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_1078 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_1080 PF01547 Bacterial extracellular solute-binding protein AMED_1081 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1082 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1083 PF00005 ABC transporter AMED_1085 PF04024 AMED_1085 AMED_1086 PF00440 Bacterial regulatory proteins, tetR family AMED_1087 PF07690 Major Facilitator Superfamily AMED_1088 PF00072 Response regulator receiver domain AMED_1088 PF00196 Bacterial regulatory proteins, luxR family AMED_1089 PF07730 Histidine kinase AMED_1090 PF02517 CAAX protease self-immunity AMED_1091 PF04542 Sigma-70 region 2 AMED_1091 PF08281 Sigma-70, region 4 AMED_1093 PF02195 ParB-like nuclease domain AMED_1094 PF00149 Calcineurin-like phosphoesterase AMED_1096 PF01544 CorA-like Mg2+ transporter protein AMED_1097 PF01575 MaoC like domain AMED_1098 PF10094 AMED_1098 AMED_1099 PF00293 NUDIX domain AMED_1101 PF03703 AMED_1101 AMED_1102 PF02811 PHP domain AMED_1103 PF01914 AMED_1103 AMED_1104 PF00754 F5/8 type C domain AMED_1104 PF05592 Bacterial alpha-L-rhamnosidase AMED_1105 PF12705 PD-(D/E)XK nuclease superfamily AMED_1108 PF00270 DEAD/DEAH box helicase AMED_1108 PF00271 Helicase conserved C-terminal domain AMED_1109 PF13794 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like AMED_1110 PF11305 AMED_1110 AMED_1112 PF16170 AMED_1112 AMED_1113 PF00440 Bacterial regulatory proteins, tetR family AMED_1114 PF11583 P-aminobenzoate N-oxygenase AurF AMED_1115 PF12146 Putative lysophospholipase AMED_1116 PF00440 Bacterial regulatory proteins, tetR family AMED_1117 PF12697 Alpha/beta hydrolase family AMED_1118 PF11350 AMED_1118 AMED_1119 PF00581 Rhodanese-like domain AMED_1119 PF00899 ThiF family AMED_1121 PF00384 Molybdopterin oxidoreductase AMED_1121 PF01568 Molydopterin dinucleotide binding domain AMED_1122 PF04324 BFD-like [2Fe-2S] binding domain AMED_1122 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1123 PF07690 Major Facilitator Superfamily AMED_1124 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMED_1124 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMED_1124 PF04324 BFD-like [2Fe-2S] binding domain AMED_1124 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1125 PF13806 Rieske-like [2Fe-2S] domain AMED_1126 PF00486 Transcriptional regulatory protein, C terminal AMED_1126 PF02602 Uroporphyrinogen-III synthase HemD AMED_1127 PF13349 AMED_1127 AMED_1128 PF06224 AMED_1128 AMED_1129 PF11528 Protein of unknown function (DUF3224) AMED_1130 PF08279 HTH domain AMED_1130 PF13280 AMED_1130 AMED_1131 PF02602 Uroporphyrinogen-III synthase HemD AMED_1132 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMED_1133 PF00580 UvrD/REP helicase N-terminal domain AMED_1133 PF12705 PD-(D/E)XK nuclease superfamily AMED_1133 PF13361 UvrD-like helicase C-terminal domain AMED_1134 PF00580 UvrD/REP helicase N-terminal domain AMED_1134 PF12705 PD-(D/E)XK nuclease superfamily AMED_1134 PF13361 UvrD-like helicase C-terminal domain AMED_1136 PF02254 TrkA-N domain AMED_1136 PF07885 Ion channel AMED_1138 PF04228 AMED_1138 AMED_1140 PF13559 AMED_1140 AMED_1141 PF14258 AMED_1141 AMED_1142 PF07726 ATPase family associated with various cellular activities (AAA) AMED_1143 PF01882 AMED_1143 AMED_1144 PF01944 AMED_1144 AMED_1145 PF06271 AMED_1145 AMED_1146 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_1147 PF04228 AMED_1147 AMED_1148 PF09972 AMED_1148 AMED_1149 PF09972 AMED_1149 AMED_1150 PF00675 Insulinase (Peptidase family M16) AMED_1150 PF05193 Peptidase M16 inactive domain AMED_1151 PF00675 Insulinase (Peptidase family M16) AMED_1151 PF05193 Peptidase M16 inactive domain AMED_1152 PF00293 NUDIX domain AMED_1152 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMED_1152 PF09297 NADH pyrophosphatase zinc ribbon domain AMED_1153 PF00480 ROK family AMED_1154 PF13416 Bacterial extracellular solute-binding protein AMED_1155 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1156 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1157 PF02056 Family 4 glycosyl hydrolase AMED_1157 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMED_1158 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMED_1159 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_1160 PF12840 Helix-turn-helix domain AMED_1161 PF10708 AMED_1161 AMED_1162 PF02447 AMED_1162 AMED_1163 PF01202 Shikimate kinase AMED_1164 PF00392 Bacterial regulatory proteins, gntR family AMED_1164 PF07729 FCD domain AMED_1165 PF03186 AMED_1165 AMED_1167 PF04299 Putative FMN-binding domain AMED_1168 PF02104 AMED_1168 AMED_1169 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMED_1171 PF01817 Chorismate mutase type II AMED_1172 PF01784 NIF3 (NGG1p interacting factor 3) AMED_1173 PF02591 Putative zinc ribbon domain AMED_1174 PF00300 Histidine phosphatase superfamily (branch 1) AMED_1174 PF13456 Reverse transcriptase-like AMED_1176 PF02040 AMED_1176 AMED_1177 PF00196 Bacterial regulatory proteins, luxR family AMED_1177 PF13191 AAA ATPase domain AMED_1179 PF04542 Sigma-70 region 2 AMED_1179 PF08281 Sigma-70, region 4 AMED_1180 PF13628 AMED_1180 AMED_1181 PF13370 4Fe-4S single cluster domain AMED_1182 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1182 PF14759 Reductase C-terminal AMED_1186 PF12846 AAA-like domain AMED_1189 PF00877 NlpC/P60 family AMED_1192 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_1193 PF00773 RNB domain AMED_1195 PF00171 Aldehyde dehydrogenase family AMED_1196 PF00202 Aminotransferase class-III AMED_1197 PF07905 AMED_1197 AMED_1197 PF13556 PucR C-terminal helix-turn-helix domain AMED_1200 PF00392 Bacterial regulatory proteins, gntR family AMED_1200 PF07729 FCD domain AMED_1201 PF00171 Aldehyde dehydrogenase family AMED_1202 PF00005 ABC transporter AMED_1202 PF08402 TOBE domain AMED_1203 PF13416 Bacterial extracellular solute-binding protein AMED_1204 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1205 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1206 PF00561 alpha/beta hydrolase fold AMED_1207 PF02673 AMED_1207 AMED_1208 PF09678 AMED_1208 AMED_1209 PF02548 Ketopantoate hydroxymethyltransferase AMED_1210 PF00152 tRNA synthetases class II (D, K and N) AMED_1210 PF01336 OB-fold nucleic acid binding domain AMED_1210 PF09924 Uncharacterized conserved protein (DUF2156) AMED_1210 PF16995 AMED_1210 AMED_1212 PF04978 Protein of unknown function (DUF664) AMED_1213 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMED_1214 PF13468 Glyoxalase-like domain AMED_1215 PF00795 Carbon-nitrogen hydrolase AMED_1215 PF02540 NAD synthase AMED_1216 PF01043 SecA preprotein cross-linking domain AMED_1216 PF07516 SecA Wing and Scaffold domain AMED_1216 PF07517 SecA DEAD-like domain AMED_1217 PF00561 alpha/beta hydrolase fold AMED_1218 PF07161 Protein of unknown function (DUF1396) AMED_1219 PF07690 Major Facilitator Superfamily AMED_1220 PF00120 Glutamine synthetase, catalytic domain AMED_1220 PF03951 Glutamine synthetase, beta-Grasp domain AMED_1221 PF01425 Amidase AMED_1222 PF01037 AsnC family AMED_1222 PF13404 AsnC-type helix-turn-helix domain AMED_1223 PF00581 Rhodanese-like domain AMED_1224 PF00117 Glutamine amidotransferase class-I AMED_1225 PF01384 AMED_1225 AMED_1226 PF01384 AMED_1226 AMED_1227 PF03710 Glutamate-ammonia ligase adenylyltransferase AMED_1227 PF08335 GlnD PII-uridylyltransferase AMED_1228 PF13279 Thioesterase-like superfamily AMED_1229 PF00120 Glutamine synthetase, catalytic domain AMED_1229 PF03951 Glutamine synthetase, beta-Grasp domain AMED_1230 PF06271 AMED_1230 AMED_1232 PF13829 AMED_1232 AMED_1233 PF00570 HRDC domain AMED_1233 PF00580 UvrD/REP helicase N-terminal domain AMED_1233 PF13361 UvrD-like helicase C-terminal domain AMED_1235 PF02467 AMED_1235 AMED_1237 PF08241 Methyltransferase domain AMED_1240 PF03109 AMED_1240 AMED_1241 PF00899 ThiF family AMED_1242 PF01863 Protein of unknown function DUF45 AMED_1243 PF10103 Uncharacterised conserved protein (DUF2342) AMED_1244 PF05362 Lon protease (S16) C-terminal proteolytic domain AMED_1244 PF13180 PDZ domain AMED_1246 PF03699 AMED_1246 AMED_1247 PF01494 FAD binding domain AMED_1248 PF00440 Bacterial regulatory proteins, tetR family AMED_1248 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_1249 PF03551 Transcriptional regulator PadR-like family AMED_1250 PF00472 RF-1 domain AMED_1250 PF03462 PCRF domain AMED_1251 PF00005 ABC transporter AMED_1252 PF02687 AMED_1252 AMED_1253 PF01668 SmpB protein AMED_1254 PF04909 Amidohydrolase AMED_1255 PF01757 AMED_1255 AMED_1257 PF03928 Domain of unknown function (DUF336) AMED_1258 PF00072 Response regulator receiver domain AMED_1258 PF00196 Bacterial regulatory proteins, luxR family AMED_1259 PF07730 Histidine kinase AMED_1259 PF13796 AMED_1259 AMED_1260 PF13796 AMED_1260 AMED_1262 PF00990 GGDEF domain AMED_1264 PF01614 Bacterial transcriptional regulator AMED_1264 PF09339 IclR helix-turn-helix domain AMED_1265 PF00221 Aromatic amino acid lyase AMED_1266 PF01175 Urocanase AMED_1267 PF01546 Peptidase family M20/M25/M40 AMED_1268 PF01979 Amidohydrolase family AMED_1269 PF01979 Amidohydrolase family AMED_1270 PF01494 FAD binding domain AMED_1271 PF01674 Lipase (class 2) AMED_1273 PF01384 AMED_1273 AMED_1277 PF07730 Histidine kinase AMED_1278 PF00072 Response regulator receiver domain AMED_1278 PF00196 Bacterial regulatory proteins, luxR family AMED_1279 PF01494 FAD binding domain AMED_1281 PF00931 NB-ARC domain AMED_1281 PF13424 Tetratricopeptide repeat AMED_1283 PF00005 ABC transporter AMED_1284 PF00271 Helicase conserved C-terminal domain AMED_1284 PF04408 Helicase associated domain (HA2) AMED_1284 PF08482 AMED_1284 AMED_1285 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_1286 PF07291 AMED_1286 AMED_1287 PF13462 Thioredoxin AMED_1289 PF00877 NlpC/P60 family AMED_1291 PF02575 YbaB/EbfC DNA-binding family AMED_1292 PF01494 FAD binding domain AMED_1293 PF12833 Helix-turn-helix domain AMED_1294 PF04978 Protein of unknown function (DUF664) AMED_1295 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_1295 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_1296 PF00652 Ricin-type beta-trefoil lectin domain AMED_1296 PF06283 Trehalose utilisation AMED_1297 PF00521 DNA gyrase/topoisomerase IV, subunit A AMED_1297 PF03989 DNA gyrase C-terminal domain, beta-propeller AMED_1298 PF00204 DNA gyrase B AMED_1298 PF00986 DNA gyrase B subunit, carboxyl terminus AMED_1298 PF01751 Toprim domain AMED_1298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1300 PF00296 Luciferase-like monooxygenase AMED_1301 PF03358 NADPH-dependent FMN reductase AMED_1302 PF01872 RibD C-terminal domain AMED_1303 PF00144 Beta-lactamase AMED_1304 PF09656 AMED_1304 AMED_1305 PF00440 Bacterial regulatory proteins, tetR family AMED_1306 PF00703 Glycosyl hydrolases family 2 AMED_1306 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_1306 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_1306 PF13385 Concanavalin A-like lectin/glucanases superfamily AMED_1307 PF02653 AMED_1307 AMED_1308 PF02653 AMED_1308 AMED_1309 PF00005 ABC transporter AMED_1310 PF13407 Periplasmic binding protein domain AMED_1311 PF00356 Bacterial regulatory proteins, lacI family AMED_1311 PF13377 Periplasmic binding protein-like domain AMED_1312 PF13175 AAA ATPase domain AMED_1312 PF13304 AAA domain AMED_1313 PF01638 HxlR-like helix-turn-helix AMED_1314 PF00106 short chain dehydrogenase AMED_1315 PF00440 Bacterial regulatory proteins, tetR family AMED_1315 PF13305 WHG domain AMED_1316 PF01636 Phosphotransferase enzyme family AMED_1317 PF04954 Siderophore-interacting protein AMED_1317 PF08021 Siderophore-interacting FAD-binding domain AMED_1318 PF00005 ABC transporter AMED_1319 PF00440 Bacterial regulatory proteins, tetR family AMED_1319 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_1320 PF08241 Methyltransferase domain AMED_1322 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AMED_1322 PF04020 AMED_1322 AMED_1323 PF09335 AMED_1323 AMED_1324 PF12706 Beta-lactamase superfamily domain AMED_1326 PF14542 GCN5-related N-acetyl-transferase AMED_1327 PF02983 Alpha-lytic protease prodomain AMED_1328 PF13649 Methyltransferase domain AMED_1329 PF00652 Ricin-type beta-trefoil lectin domain AMED_1329 PF00754 F5/8 type C domain AMED_1330 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_1331 PF00067 Cytochrome P450 AMED_1332 PF00152 tRNA synthetases class II (D, K and N) AMED_1332 PF01336 OB-fold nucleic acid binding domain AMED_1334 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_1335 PF07336 Protein of unknown function (DUF1470) AMED_1335 PF11706 CGNR zinc finger AMED_1336 PF00561 alpha/beta hydrolase fold AMED_1337 PF00041 Fibronectin type III domain AMED_1337 PF00754 F5/8 type C domain AMED_1337 PF07995 Glucose / Sorbosone dehydrogenase AMED_1339 PF01906 Putative heavy-metal-binding AMED_1340 PF01906 Putative heavy-metal-binding AMED_1341 PF00294 pfkB family carbohydrate kinase AMED_1342 PF02056 Family 4 glycosyl hydrolase AMED_1342 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMED_1343 PF00106 short chain dehydrogenase AMED_1344 PF00890 FAD binding domain AMED_1345 PF00296 Luciferase-like monooxygenase AMED_1346 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMED_1346 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMED_1347 PF00440 Bacterial regulatory proteins, tetR family AMED_1347 PF13977 Bacterial transcriptional repressor AMED_1348 PF06441 Epoxide hydrolase N terminus AMED_1348 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_1349 PF00440 Bacterial regulatory proteins, tetR family AMED_1350 PF01345 AMED_1350 AMED_1351 PF13365 Trypsin-like peptidase domain AMED_1352 PF00196 Bacterial regulatory proteins, luxR family AMED_1353 PF01694 Rhomboid family AMED_1354 PF00809 Pterin binding enzyme AMED_1356 PF00005 ABC transporter AMED_1357 PF12730 AMED_1357 AMED_1358 PF07819 PGAP1-like protein AMED_1359 PF12770 AMED_1359 AMED_1360 PF00082 Subtilase family AMED_1362 PF04542 Sigma-70 region 2 AMED_1364 PF16483 AMED_1364 AMED_1365 PF00892 EamA-like transporter family AMED_1366 PF12802 MarR family AMED_1367 PF00753 Metallo-beta-lactamase superfamily AMED_1368 PF03830 PTS system sorbose subfamily IIB component AMED_1369 PF03609 AMED_1369 AMED_1369 PF03613 AMED_1369 AMED_1370 PF03610 PTS system fructose IIA component AMED_1372 PF00392 Bacterial regulatory proteins, gntR family AMED_1372 PF07702 UTRA domain AMED_1373 PF00486 Transcriptional regulatory protein, C terminal AMED_1373 PF00931 NB-ARC domain AMED_1373 PF03704 Bacterial transcriptional activator domain AMED_1373 PF13424 Tetratricopeptide repeat AMED_1374 PF00975 Thioesterase domain AMED_1375 PF05977 Transmembrane secretion effector AMED_1376 PF09084 NMT1/THI5 like AMED_1377 PF00005 ABC transporter AMED_1377 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMED_1378 PF00005 ABC transporter AMED_1379 PF02653 AMED_1379 AMED_1380 PF02653 AMED_1380 AMED_1381 PF13458 Periplasmic binding protein AMED_1382 PF00440 Bacterial regulatory proteins, tetR family AMED_1383 PF05729 NACHT domain AMED_1386 PF00072 Response regulator receiver domain AMED_1386 PF00196 Bacterial regulatory proteins, luxR family AMED_1387 PF07730 Histidine kinase AMED_1387 PF13796 AMED_1387 AMED_1388 PF00005 ABC transporter AMED_1390 PF02687 AMED_1390 AMED_1391 PF00457 Glycosyl hydrolases family 11 AMED_1392 PF01522 Polysaccharide deacetylase AMED_1393 PF00005 ABC transporter AMED_1394 PF12730 AMED_1394 AMED_1395 PF04185 Phosphoesterase family AMED_1396 PF13302 Acetyltransferase (GNAT) domain AMED_1399 PF02627 Carboxymuconolactone decarboxylase family AMED_1400 PF07690 Major Facilitator Superfamily AMED_1401 PF00171 Aldehyde dehydrogenase family AMED_1402 PF00440 Bacterial regulatory proteins, tetR family AMED_1403 PF00723 Glycosyl hydrolases family 15 AMED_1404 PF08240 Alcohol dehydrogenase GroES-like domain AMED_1404 PF16912 AMED_1404 AMED_1405 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_1406 PF03067 Chitin binding domain AMED_1408 PF00296 Luciferase-like monooxygenase AMED_1409 PF01904 Protein of unknown function DUF72 AMED_1410 PF05050 Methyltransferase FkbM domain AMED_1411 PF03734 L,D-transpeptidase catalytic domain AMED_1412 PF05977 Transmembrane secretion effector AMED_1413 PF01433 Peptidase family M1 AMED_1414 PF12721 AMED_1414 AMED_1416 PF12802 MarR family AMED_1418 PF05593 AMED_1418 AMED_1418 PF14410 AMED_1418 AMED_1419 PF10824 Protein of unknown function (DUF2580) AMED_1420 PF02575 YbaB/EbfC DNA-binding family AMED_1421 PF12867 DinB superfamily AMED_1424 PF02426 Muconolactone delta-isomerase AMED_1425 PF08240 Alcohol dehydrogenase GroES-like domain AMED_1425 PF13602 Zinc-binding dehydrogenase AMED_1426 PF00440 Bacterial regulatory proteins, tetR family AMED_1427 PF08240 Alcohol dehydrogenase GroES-like domain AMED_1427 PF13602 Zinc-binding dehydrogenase AMED_1428 PF13560 Helix-turn-helix domain AMED_1430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1431 PF03259 Roadblock/LC7 domain AMED_1432 PF05331 AMED_1432 AMED_1433 PF03029 Conserved hypothetical ATP binding protein AMED_1436 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_1437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_1437 PF03466 LysR substrate binding domain AMED_1438 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_1439 PF00440 Bacterial regulatory proteins, tetR family AMED_1440 PF01494 FAD binding domain AMED_1441 PF00440 Bacterial regulatory proteins, tetR family AMED_1441 PF16859 AMED_1441 AMED_1442 PF01527 Transposase AMED_1443 PF00665 Integrase core domain AMED_1443 PF13276 AMED_1443 AMED_1444 PF14435 AMED_1444 AMED_1446 PF00440 Bacterial regulatory proteins, tetR family AMED_1447 PF00248 Aldo/keto reductase family AMED_1448 PF15585 AMED_1448 AMED_1449 PF04542 Sigma-70 region 2 AMED_1449 PF08281 Sigma-70, region 4 AMED_1452 PF00665 Integrase core domain AMED_1452 PF13276 AMED_1452 AMED_1453 PF01527 Transposase AMED_1454 PF00931 NB-ARC domain AMED_1454 PF13181 Tetratricopeptide repeat AMED_1454 PF13424 Tetratricopeptide repeat AMED_1455 PF12802 MarR family AMED_1456 PF03055 Retinal pigment epithelial membrane protein AMED_1457 PF12802 MarR family AMED_1458 PF13564 AMED_1458 AMED_1459 PF00107 Zinc-binding dehydrogenase AMED_1459 PF08240 Alcohol dehydrogenase GroES-like domain AMED_1461 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMED_1462 PF00682 HMGL-like AMED_1463 PF00501 AMP-binding enzyme AMED_1463 PF13193 AMP-binding enzyme C-terminal domain AMED_1464 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_1464 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_1465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1465 PF07730 Histidine kinase AMED_1465 PF13185 GAF domain AMED_1466 PF00072 Response regulator receiver domain AMED_1466 PF00196 Bacterial regulatory proteins, luxR family AMED_1467 PF00589 Phage integrase family AMED_1469 PF00652 Ricin-type beta-trefoil lectin domain AMED_1470 PF03729 AMED_1470 AMED_1471 PF00753 Metallo-beta-lactamase superfamily AMED_1471 PF12706 Beta-lactamase superfamily domain AMED_1472 PF00072 Response regulator receiver domain AMED_1472 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1473 PF00027 Cyclic nucleotide-binding domain AMED_1473 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1474 PF00135 Carboxylesterase family AMED_1476 PF05816 AMED_1476 AMED_1477 PF00092 von Willebrand factor type A domain AMED_1477 PF13531 Bacterial extracellular solute-binding protein AMED_1481 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMED_1482 PF01548 AMED_1482 AMED_1482 PF02371 AMED_1482 AMED_1483 PF00805 Pentapeptide repeats (8 copies) AMED_1483 PF13599 Pentapeptide repeats (9 copies) AMED_1484 PF00174 Oxidoreductase molybdopterin binding domain AMED_1485 PF00175 Oxidoreductase NAD-binding domain AMED_1485 PF00970 Oxidoreductase FAD-binding domain AMED_1486 PF00041 Fibronectin type III domain AMED_1486 PF13229 Right handed beta helix region AMED_1487 PF00196 Bacterial regulatory proteins, luxR family AMED_1490 PF00350 Dynamin family AMED_1492 PF01042 Endoribonuclease L-PSP AMED_1493 PF01638 HxlR-like helix-turn-helix AMED_1494 PF00501 AMP-binding enzyme AMED_1494 PF13193 AMP-binding enzyme C-terminal domain AMED_1495 PF00440 Bacterial regulatory proteins, tetR family AMED_1496 PF01464 Transglycosylase SLT domain AMED_1497 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_1498 PF01270 Glycosyl hydrolases family 8 AMED_1499 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_1500 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_1501 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1502 PF00005 ABC transporter AMED_1503 PF00266 Aminotransferase class-V AMED_1503 PF08348 AMED_1503 AMED_1503 PF13309 AMED_1503 AMED_1505 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMED_1506 PF00561 alpha/beta hydrolase fold AMED_1506 PF08386 TAP-like protein AMED_1507 PF00005 ABC transporter AMED_1508 PF01061 AMED_1508 AMED_1510 PF13601 Winged helix DNA-binding domain AMED_1511 PF00817 impB/mucB/samB family AMED_1511 PF11798 IMS family HHH motif AMED_1511 PF11799 impB/mucB/samB family C-terminal domain AMED_1512 PF07470 Glycosyl Hydrolase Family 88 AMED_1513 PF00392 Bacterial regulatory proteins, gntR family AMED_1513 PF07729 FCD domain AMED_1514 PF02653 AMED_1514 AMED_1515 PF00005 ABC transporter AMED_1516 PF13407 Periplasmic binding protein domain AMED_1517 PF09587 Bacterial capsule synthesis protein PGA_cap AMED_1518 PF00348 Polyprenyl synthetase AMED_1519 PF00027 Cyclic nucleotide-binding domain AMED_1520 PF00027 Cyclic nucleotide-binding domain AMED_1521 PF14023 AMED_1521 AMED_1523 PF13407 Periplasmic binding protein domain AMED_1524 PF14342 AMED_1524 AMED_1525 PF07470 Glycosyl Hydrolase Family 88 AMED_1527 PF00486 Transcriptional regulatory protein, C terminal AMED_1527 PF00931 NB-ARC domain AMED_1527 PF03704 Bacterial transcriptional activator domain AMED_1527 PF13424 Tetratricopeptide repeat AMED_1529 PF09423 PhoD-like phosphatase AMED_1529 PF16655 AMED_1529 AMED_1530 PF00295 Glycosyl hydrolases family 28 AMED_1531 PF07470 Glycosyl Hydrolase Family 88 AMED_1532 PF00754 F5/8 type C domain AMED_1532 PF01120 Alpha-L-fucosidase AMED_1533 PF01204 Trehalase AMED_1534 PF00480 ROK family AMED_1535 PF00082 Subtilase family AMED_1535 PF09286 Pro-kumamolisin, activation domain AMED_1536 PF07730 Histidine kinase AMED_1537 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMED_1538 PF00106 short chain dehydrogenase AMED_1539 PF02547 Queuosine biosynthesis protein AMED_1541 PF13379 NMT1-like family AMED_1542 PF00005 ABC transporter AMED_1543 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1544 PF08570 AMED_1544 AMED_1545 PF08450 SMP-30/Gluconolaconase/LRE-like region AMED_1546 PF00270 DEAD/DEAH box helicase AMED_1546 PF00271 Helicase conserved C-terminal domain AMED_1547 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_1548 PF04075 Domain of unknown function (DUF385) AMED_1549 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_1551 PF00575 S1 RNA binding domain AMED_1551 PF09371 Tex-like protein N-terminal domain AMED_1551 PF12836 Helix-hairpin-helix motif AMED_1551 PF16921 AMED_1551 AMED_1552 PF00704 Glycosyl hydrolases family 18 AMED_1552 PF02018 Carbohydrate binding domain AMED_1553 PF00732 GMC oxidoreductase AMED_1555 PF06224 AMED_1555 AMED_1556 PF12625 AMED_1556 AMED_1556 PF12833 Helix-turn-helix domain AMED_1557 PF00440 Bacterial regulatory proteins, tetR family AMED_1560 PF00440 Bacterial regulatory proteins, tetR family AMED_1561 PF00501 AMP-binding enzyme AMED_1561 PF14535 AMP-binding enzyme C-terminal domain AMED_1562 PF03061 Thioesterase superfamily AMED_1563 PF00171 Aldehyde dehydrogenase family AMED_1563 PF01575 MaoC like domain AMED_1564 PF05138 Phenylacetic acid catabolic protein AMED_1565 PF06243 Phenylacetic acid degradation B AMED_1566 PF05138 Phenylacetic acid catabolic protein AMED_1567 PF01883 Domain of unknown function DUF59 AMED_1568 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_1568 PF00175 Oxidoreductase NAD-binding domain AMED_1568 PF00970 Oxidoreductase FAD-binding domain AMED_1570 PF13560 Helix-turn-helix domain AMED_1571 PF00211 Adenylate and Guanylate cyclase catalytic domain AMED_1571 PF16701 AMED_1571 AMED_1572 PF00582 Universal stress protein family AMED_1574 PF00107 Zinc-binding dehydrogenase AMED_1574 PF08240 Alcohol dehydrogenase GroES-like domain AMED_1575 PF03779 AMED_1575 AMED_1576 PF00440 Bacterial regulatory proteins, tetR family AMED_1577 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_1578 PF00108 Thiolase, N-terminal domain AMED_1578 PF02803 Thiolase, C-terminal domain AMED_1579 PF03308 ArgK protein AMED_1580 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMED_1581 PF00155 Aminotransferase class I and II AMED_1581 PF00392 Bacterial regulatory proteins, gntR family AMED_1582 PF02627 Carboxymuconolactone decarboxylase family AMED_1583 PF13714 Phosphoenolpyruvate phosphomutase AMED_1584 PF00474 Sodium:solute symporter family AMED_1585 PF04341 AMED_1585 AMED_1586 PF00474 Sodium:solute symporter family AMED_1588 PF00072 Response regulator receiver domain AMED_1588 PF04397 LytTr DNA-binding domain AMED_1589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1589 PF06580 AMED_1589 AMED_1591 PF13407 Periplasmic binding protein domain AMED_1592 PF02653 AMED_1592 AMED_1593 PF00005 ABC transporter AMED_1595 PF00356 Bacterial regulatory proteins, lacI family AMED_1595 PF13377 Periplasmic binding protein-like domain AMED_1596 PF07971 Glycosyl hydrolase family 92 AMED_1597 PF07971 Glycosyl hydrolase family 92 AMED_1598 PF12823 AMED_1598 AMED_1599 PF12802 MarR family AMED_1600 PF01910 Domain of unknown function DUF77 AMED_1602 PF00085 Thioredoxin AMED_1602 PF14561 Tetratricopeptide repeat AMED_1603 PF04228 AMED_1603 AMED_1604 PF00343 Carbohydrate phosphorylase AMED_1604 PF11897 AMED_1604 AMED_1609 PF00296 Luciferase-like monooxygenase AMED_1610 PF00581 Rhodanese-like domain AMED_1611 PF05995 Cysteine dioxygenase type I AMED_1613 PF00005 ABC transporter AMED_1614 PF00378 Enoyl-CoA hydratase/isomerase family AMED_1615 PF08241 Methyltransferase domain AMED_1617 PF04248 Domain of unknown function (DUF427) AMED_1618 PF03466 LysR substrate binding domain AMED_1619 PF00704 Glycosyl hydrolases family 18 AMED_1620 PF10067 AMED_1620 AMED_1621 PF00392 Bacterial regulatory proteins, gntR family AMED_1621 PF00440 Bacterial regulatory proteins, tetR family AMED_1621 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_1622 PF13302 Acetyltransferase (GNAT) domain AMED_1623 PF01494 FAD binding domain AMED_1624 PF03551 Transcriptional regulator PadR-like family AMED_1625 PF12802 MarR family AMED_1626 PF07398 AMED_1626 AMED_1626 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_1627 PF00753 Metallo-beta-lactamase superfamily AMED_1628 PF00248 Aldo/keto reductase family AMED_1629 PF01494 FAD binding domain AMED_1630 PF00877 NlpC/P60 family AMED_1631 PF01156 Inosine-uridine preferring nucleoside hydrolase AMED_1632 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_1633 PF08719 Domain of unknown function (DUF1768) AMED_1634 PF00291 Pyridoxal-phosphate dependent enzyme AMED_1634 PF00585 C-terminal regulatory domain of Threonine dehydratase AMED_1635 PF04542 Sigma-70 region 2 AMED_1635 PF08281 Sigma-70, region 4 AMED_1637 PF06114 Domain of unknown function (DUF955) AMED_1637 PF09856 AMED_1637 AMED_1637 PF13560 Helix-turn-helix domain AMED_1638 PF00463 Isocitrate lyase family AMED_1639 PF01274 Malate synthase AMED_1642 PF00440 Bacterial regulatory proteins, tetR family AMED_1643 PF07080 Protein of unknown function (DUF1348) AMED_1646 PF00534 Glycosyl transferases group 1 AMED_1646 PF13439 Glycosyltransferase Family 4 AMED_1647 PF00703 Glycosyl hydrolases family 2 AMED_1647 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_1647 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_1648 PF00255 Glutathione peroxidase AMED_1649 PF03065 Glycosyl hydrolase family 57 AMED_1649 PF09210 Domain of unknown function (DUF1957) AMED_1650 PF08241 Methyltransferase domain AMED_1652 PF02645 Uncharacterised protein, DegV family COG1307 AMED_1653 PF01012 Electron transfer flavoprotein domain AMED_1654 PF00766 Electron transfer flavoprotein FAD-binding domain AMED_1654 PF01012 Electron transfer flavoprotein domain AMED_1655 PF13444 Acetyltransferase (GNAT) domain AMED_1656 PF01553 Acyltransferase AMED_1657 PF00107 Zinc-binding dehydrogenase AMED_1657 PF08240 Alcohol dehydrogenase GroES-like domain AMED_1658 PF00196 Bacterial regulatory proteins, luxR family AMED_1659 PF07690 Major Facilitator Superfamily AMED_1660 PF00266 Aminotransferase class-V AMED_1661 PF03054 tRNA methyl transferase AMED_1662 PF02720 AMED_1662 AMED_1663 PF00583 Acetyltransferase (GNAT) family AMED_1664 PF00583 Acetyltransferase (GNAT) family AMED_1665 PF00753 Metallo-beta-lactamase superfamily AMED_1666 PF03803 AMED_1666 AMED_1666 PF10708 AMED_1666 AMED_1667 PF01717 Cobalamin-independent synthase, Catalytic domain AMED_1669 PF00533 BRCA1 C Terminus (BRCT) domain AMED_1669 PF01653 NAD-dependent DNA ligase adenylation domain AMED_1669 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMED_1669 PF03120 NAD-dependent DNA ligase OB-fold domain AMED_1669 PF12826 Helix-hairpin-helix motif AMED_1670 PF00583 Acetyltransferase (GNAT) family AMED_1672 PF02686 Glu-tRNAGln amidotransferase C subunit AMED_1673 PF01425 Amidase AMED_1674 PF02637 GatB domain AMED_1674 PF02934 GatB/GatE catalytic domain AMED_1676 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_1676 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_1677 PF14100 AMED_1677 AMED_1679 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_1679 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_1680 PF07995 Glucose / Sorbosone dehydrogenase AMED_1681 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_1682 PF07681 AMED_1682 AMED_1683 PF00920 Dehydratase family AMED_1684 PF10756 AMED_1684 AMED_1685 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_1685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_1685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_1686 PF01842 ACT domain AMED_1686 PF10369 Small subunit of acetolactate synthase AMED_1687 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMED_1687 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AMED_1688 PF04149 AMED_1688 AMED_1689 PF12680 SnoaL-like domain AMED_1690 PF00023 Ankyrin repeat AMED_1690 PF12796 Ankyrin repeats (3 copies) AMED_1691 PF00296 Luciferase-like monooxygenase AMED_1692 PF00296 Luciferase-like monooxygenase AMED_1693 PF00440 Bacterial regulatory proteins, tetR family AMED_1694 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_1694 PF01842 ACT domain AMED_1694 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_1695 PF00082 Subtilase family AMED_1696 PF00180 Isocitrate/isopropylmalate dehydrogenase AMED_1697 PF00682 HMGL-like AMED_1697 PF08502 LeuA allosteric (dimerisation) domain AMED_1698 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_1698 PF10370 Domain of unknown function (DUF2437) AMED_1699 PF01494 FAD binding domain AMED_1700 PF13419 Haloacid dehalogenase-like hydrolase AMED_1701 PF00216 Bacterial DNA-binding protein AMED_1702 PF00931 NB-ARC domain AMED_1702 PF13424 Tetratricopeptide repeat AMED_1704 PF04672 S-adenosyl methyltransferase AMED_1706 PF05270 Alpha-L-arabinofuranosidase B (ABFB) AMED_1706 PF09206 Alpha-L-arabinofuranosidase B, catalytic AMED_1709 PF00440 Bacterial regulatory proteins, tetR family AMED_1710 PF11774 Lsr2 AMED_1712 PF00216 Bacterial DNA-binding protein AMED_1714 PF00149 Calcineurin-like phosphoesterase AMED_1714 PF12320 Type 5 capsule protein repressor C-terminal domain AMED_1715 PF13476 AAA domain AMED_1716 PF13558 Putative exonuclease SbcCD, C subunit AMED_1718 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_1718 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_1718 PF14310 Fibronectin type III-like domain AMED_1721 PF00753 Metallo-beta-lactamase superfamily AMED_1722 PF01614 Bacterial transcriptional regulator AMED_1722 PF09339 IclR helix-turn-helix domain AMED_1723 PF00330 Aconitase family (aconitate hydratase) AMED_1724 PF00694 Aconitase C-terminal domain AMED_1725 PF00216 Bacterial DNA-binding protein AMED_1726 PF00486 Transcriptional regulatory protein, C terminal AMED_1726 PF03704 Bacterial transcriptional activator domain AMED_1726 PF13374 Tetratricopeptide repeat AMED_1727 PF00293 NUDIX domain AMED_1727 PF00300 Histidine phosphatase superfamily (branch 1) AMED_1728 PF02503 Polyphosphate kinase middle domain AMED_1728 PF13089 Polyphosphate kinase N-terminal domain AMED_1728 PF13090 Polyphosphate kinase C-terminal domain AMED_1729 PF01983 Guanylyl transferase CofC like AMED_1730 PF01553 Acyltransferase AMED_1731 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMED_1731 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMED_1732 PF05995 Cysteine dioxygenase type I AMED_1733 PF00710 Asparaginase AMED_1735 PF02424 ApbE family AMED_1736 PF04205 FMN-binding domain AMED_1737 PF00175 Oxidoreductase NAD-binding domain AMED_1737 PF01794 AMED_1737 AMED_1737 PF08022 AMED_1737 AMED_1738 PF00072 Response regulator receiver domain AMED_1738 PF00486 Transcriptional regulatory protein, C terminal AMED_1739 PF00512 His Kinase A (phospho-acceptor) domain AMED_1739 PF00672 HAMP domain AMED_1739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1740 PF12900 Pyridoxamine 5'-phosphate oxidase AMED_1741 PF00155 Aminotransferase class I and II AMED_1741 PF00392 Bacterial regulatory proteins, gntR family AMED_1742 PF01820 D-ala D-ala ligase N-terminus AMED_1742 PF07478 D-ala D-ala ligase C-terminus AMED_1743 PF12028 AMED_1743 AMED_1744 PF01037 AsnC family AMED_1745 PF00586 AIR synthase related protein, N-terminal domain AMED_1746 PF00583 Acetyltransferase (GNAT) family AMED_1747 PF16499 AMED_1747 AMED_1748 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_1749 PF03167 Uracil DNA glycosylase superfamily AMED_1750 PF12697 Alpha/beta hydrolase family AMED_1751 PF00830 Ribosomal L28 family AMED_1752 PF02734 DAK2 domain AMED_1752 PF13684 Dihydroxyacetone kinase family AMED_1753 PF00270 DEAD/DEAH box helicase AMED_1753 PF00271 Helicase conserved C-terminal domain AMED_1753 PF17191 AMED_1753 AMED_1754 PF13673 Acetyltransferase (GNAT) domain AMED_1755 PF00440 Bacterial regulatory proteins, tetR family AMED_1755 PF16859 AMED_1755 AMED_1756 PF05139 Erythromycin esterase AMED_1757 PF00656 Caspase domain AMED_1758 PF00082 Subtilase family AMED_1759 PF01609 Transposase DDE domain AMED_1759 PF13808 AMED_1759 AMED_1761 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMED_1761 PF00364 Biotin-requiring enzyme AMED_1761 PF00682 HMGL-like AMED_1761 PF02436 Conserved carboxylase domain AMED_1761 PF02785 Biotin carboxylase C-terminal domain AMED_1761 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_1762 PF00491 Arginase family AMED_1763 PF00392 Bacterial regulatory proteins, gntR family AMED_1765 PF13556 PucR C-terminal helix-turn-helix domain AMED_1770 PF13540 Regulator of chromosome condensation (RCC1) repeat AMED_1774 PF02470 AMED_1774 AMED_1775 PF02470 AMED_1775 AMED_1775 PF11887 AMED_1775 AMED_1776 PF02470 AMED_1776 AMED_1777 PF02470 AMED_1777 AMED_1778 PF02470 AMED_1778 AMED_1779 PF02470 AMED_1779 AMED_1779 PF11887 AMED_1779 AMED_1780 PF02405 AMED_1780 AMED_1781 PF02405 AMED_1781 AMED_1782 PF00296 Luciferase-like monooxygenase AMED_1783 PF01494 FAD binding domain AMED_1785 PF02861 Clp amino terminal domain AMED_1786 PF00400 WD domain, G-beta repeat AMED_1787 PF13245 Part of AAA domain AMED_1787 PF13538 UvrD-like helicase C-terminal domain AMED_1788 PF03602 Conserved hypothetical protein 95 AMED_1789 PF01467 Cytidylyltransferase AMED_1790 PF00545 ribonuclease AMED_1791 PF04542 Sigma-70 region 2 AMED_1791 PF08281 Sigma-70, region 4 AMED_1794 PF02620 AMED_1794 AMED_1795 PF01783 Ribosomal L32p protein family AMED_1796 PF00035 Double-stranded RNA binding motif AMED_1796 PF14622 Ribonuclease-III-like AMED_1797 PF14592 Chondroitinase B AMED_1798 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_1798 PF06827 Zinc finger found in FPG and IleRS AMED_1798 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMED_1799 PF13560 Helix-turn-helix domain AMED_1802 PF08450 SMP-30/Gluconolaconase/LRE-like region AMED_1803 PF03551 Transcriptional regulator PadR-like family AMED_1805 PF12697 Alpha/beta hydrolase family AMED_1807 PF00120 Glutamine synthetase, catalytic domain AMED_1808 PF07722 Peptidase C26 AMED_1809 PF00171 Aldehyde dehydrogenase family AMED_1810 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_1813 PF02347 Glycine cleavage system P-protein AMED_1814 PF01571 Aminomethyltransferase folate-binding domain AMED_1814 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMED_1815 PF01597 Glycine cleavage H-protein AMED_1816 PF00464 Serine hydroxymethyltransferase AMED_1817 PF04055 Radical SAM superfamily AMED_1817 PF16881 AMED_1817 AMED_1818 PF03313 AMED_1818 AMED_1818 PF03315 Serine dehydratase beta chain AMED_1819 PF04255 Protein of unknown function (DUF433) AMED_1821 PF00392 Bacterial regulatory proteins, gntR family AMED_1821 PF07729 FCD domain AMED_1823 PF01596 O-methyltransferase AMED_1824 PF00155 Aminotransferase class I and II AMED_1824 PF00392 Bacterial regulatory proteins, gntR family AMED_1825 PF01494 FAD binding domain AMED_1827 PF00106 short chain dehydrogenase AMED_1827 PF07993 Male sterility protein AMED_1829 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_1829 PF14759 Reductase C-terminal AMED_1830 PF13411 MerR HTH family regulatory protein AMED_1832 PF07690 Major Facilitator Superfamily AMED_1833 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_1834 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_1834 PF13378 Enolase C-terminal domain-like AMED_1835 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_1836 PF13407 Periplasmic binding protein domain AMED_1837 PF00005 ABC transporter AMED_1838 PF02653 AMED_1838 AMED_1839 PF00392 Bacterial regulatory proteins, gntR family AMED_1839 PF07729 FCD domain AMED_1841 PF00248 Aldo/keto reductase family AMED_1842 PF04909 Amidohydrolase AMED_1843 PF04542 Sigma-70 region 2 AMED_1843 PF08281 Sigma-70, region 4 AMED_1844 PF02656 AMED_1844 AMED_1845 PF02656 AMED_1845 AMED_1846 PF04138 AMED_1846 AMED_1848 PF01521 Iron-sulphur cluster biosynthesis AMED_1849 PF02595 Glycerate kinase family AMED_1850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_1850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_1851 PF02065 Melibiase AMED_1851 PF16875 AMED_1851 AMED_1852 PF00480 ROK family AMED_1853 PF13416 Bacterial extracellular solute-binding protein AMED_1854 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1855 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1856 PF16499 AMED_1856 AMED_1857 PF01144 Coenzyme A transferase AMED_1858 PF01144 Coenzyme A transferase AMED_1859 PF00108 Thiolase, N-terminal domain AMED_1859 PF02803 Thiolase, C-terminal domain AMED_1860 PF00775 Dioxygenase AMED_1860 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMED_1861 PF00775 Dioxygenase AMED_1862 PF00561 alpha/beta hydrolase fold AMED_1863 PF02627 Carboxymuconolactone decarboxylase family AMED_1864 PF01614 Bacterial transcriptional regulator AMED_1864 PF09339 IclR helix-turn-helix domain AMED_1865 PF12804 MobA-like NTP transferase domain AMED_1866 PF07728 AAA domain (dynein-related subfamily) AMED_1868 PF05762 VWA domain containing CoxE-like protein AMED_1869 PF02625 XdhC and CoxI family AMED_1869 PF13478 XdhC Rossmann domain AMED_1870 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_1870 PF01799 [2Fe-2S] binding domain AMED_1871 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_1871 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_1872 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_1872 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_1873 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) AMED_1874 PF00990 GGDEF domain AMED_1875 PF13738 Pyridine nucleotide-disulphide oxidoreductase AMED_1876 PF00248 Aldo/keto reductase family AMED_1877 PF00440 Bacterial regulatory proteins, tetR family AMED_1878 PF00041 Fibronectin type III domain AMED_1878 PF00149 Calcineurin-like phosphoesterase AMED_1878 PF00754 F5/8 type C domain AMED_1879 PF07690 Major Facilitator Superfamily AMED_1880 PF07676 WD40-like Beta Propeller Repeat AMED_1881 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_1881 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_1881 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_1882 PF04962 KduI/IolB family AMED_1884 PF00294 pfkB family carbohydrate kinase AMED_1885 PF00005 ABC transporter AMED_1886 PF02653 AMED_1886 AMED_1887 PF13407 Periplasmic binding protein domain AMED_1888 PF01261 Xylose isomerase-like TIM barrel AMED_1889 PF00356 Bacterial regulatory proteins, lacI family AMED_1889 PF13377 Periplasmic binding protein-like domain AMED_1890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_1890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_1891 PF00733 Asparagine synthase AMED_1891 PF13537 Glutamine amidotransferase domain AMED_1893 PF03814 AMED_1893 AMED_1894 PF00122 E1-E2 ATPase AMED_1894 PF00702 haloacid dehalogenase-like hydrolase AMED_1895 PF02669 AMED_1895 AMED_1896 PF00512 His Kinase A (phospho-acceptor) domain AMED_1896 PF00582 Universal stress protein family AMED_1896 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_1896 PF02702 Osmosensitive K+ channel His kinase sensor domain AMED_1896 PF13493 Domain of unknown function (DUF4118) AMED_1897 PF00072 Response regulator receiver domain AMED_1897 PF00486 Transcriptional regulatory protein, C terminal AMED_1899 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_1899 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_1900 PF00440 Bacterial regulatory proteins, tetR family AMED_1902 PF00708 Acylphosphatase AMED_1903 PF02463 RecF/RecN/SMC N terminal domain AMED_1903 PF06470 SMC proteins Flexible Hinge Domain AMED_1904 PF11937 AMED_1904 AMED_1905 PF00474 Sodium:solute symporter family AMED_1906 PF03702 Uncharacterised protein family (UPF0075) AMED_1907 PF00448 SRP54-type protein, GTPase domain AMED_1907 PF02881 SRP54-type protein, helical bundle domain AMED_1909 PF13302 Acetyltransferase (GNAT) domain AMED_1910 PF01614 Bacterial transcriptional regulator AMED_1910 PF09339 IclR helix-turn-helix domain AMED_1911 PF01274 Malate synthase AMED_1912 PF01274 Malate synthase AMED_1915 PF10979 AMED_1915 AMED_1916 PF00375 Sodium:dicarboxylate symporter family AMED_1917 PF12802 MarR family AMED_1918 PF07905 AMED_1918 AMED_1918 PF13556 PucR C-terminal helix-turn-helix domain AMED_1919 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_1919 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_1920 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_1920 PF01799 [2Fe-2S] binding domain AMED_1921 PF01979 Amidohydrolase family AMED_1922 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_1922 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_1923 PF00652 Ricin-type beta-trefoil lectin domain AMED_1923 PF16499 AMED_1923 AMED_1924 PF00440 Bacterial regulatory proteins, tetR family AMED_1925 PF01609 Transposase DDE domain AMED_1925 PF13808 AMED_1925 AMED_1926 PF01014 Uricase AMED_1927 PF00576 HIUase/Transthyretin family AMED_1928 PF09349 OHCU decarboxylase AMED_1929 PF01910 Domain of unknown function DUF77 AMED_1929 PF13309 AMED_1929 AMED_1930 PF01979 Amidohydrolase family AMED_1931 PF03561 Allantoicase repeat AMED_1933 PF13380 CoA binding domain AMED_1934 PF01053 Cys/Met metabolism PLP-dependent enzyme AMED_1936 PF00106 short chain dehydrogenase AMED_1937 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_1937 PF03466 LysR substrate binding domain AMED_1938 PF04542 Sigma-70 region 2 AMED_1938 PF08281 Sigma-70, region 4 AMED_1939 PF11575 AMED_1939 AMED_1941 PF00909 Ammonium Transporter Family AMED_1942 PF00543 Nitrogen regulatory protein P-II AMED_1943 PF01966 HD domain AMED_1944 PF01494 FAD binding domain AMED_1946 PF00440 Bacterial regulatory proteins, tetR family AMED_1947 PF00990 GGDEF domain AMED_1948 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_1949 PF00440 Bacterial regulatory proteins, tetR family AMED_1949 PF13977 Bacterial transcriptional repressor AMED_1951 PF02735 Ku70/Ku80 beta-barrel domain AMED_1952 PF01047 MarR family AMED_1953 PF00005 ABC transporter AMED_1953 PF00664 ABC transporter transmembrane region AMED_1954 PF00448 SRP54-type protein, GTPase domain AMED_1954 PF02881 SRP54-type protein, helical bundle domain AMED_1954 PF02978 Signal peptide binding domain AMED_1955 PF01979 Amidohydrolase family AMED_1956 PF02517 CAAX protease self-immunity AMED_1957 PF02517 CAAX protease self-immunity AMED_1958 PF00886 Ribosomal protein S16 AMED_1959 PF13083 KH domain AMED_1960 PF01782 RimM N-terminal domain AMED_1960 PF05239 PRC-barrel domain AMED_1962 PF01746 tRNA (Guanine-1)-methyltransferase AMED_1963 PF01245 Ribosomal protein L19 AMED_1964 PF00717 Peptidase S24-like AMED_1964 PF10502 Signal peptidase, peptidase S26 AMED_1965 PF01351 Ribonuclease HII AMED_1966 PF10611 AMED_1966 AMED_1967 PF02021 Uncharacterised protein family UPF0102 AMED_1968 PF01078 Magnesium chelatase, subunit ChlI AMED_1968 PF13335 AMED_1968 AMED_1968 PF13541 Subunit ChlI of Mg-chelatase AMED_1969 PF02481 DNA recombination-mediator protein A AMED_1970 PF00589 Phage integrase family AMED_1970 PF02899 Phage integrase, N-terminal SAM-like domain AMED_1971 PF04539 Sigma-70 region 3 AMED_1971 PF04542 Sigma-70 region 2 AMED_1971 PF04545 Sigma-70, region 4 AMED_1972 PF01551 Peptidase family M23 AMED_1973 PF00318 Ribosomal protein S2 AMED_1974 PF00889 Elongation factor TS AMED_1975 PF00696 Amino acid kinase family AMED_1976 PF01765 Ribosome recycling factor AMED_1977 PF01148 Cytidylyltransferase family AMED_1979 PF08241 Methyltransferase domain AMED_1980 PF03551 Transcriptional regulator PadR-like family AMED_1981 PF01032 FecCD transport family AMED_1982 PF01032 FecCD transport family AMED_1983 PF00005 ABC transporter AMED_1984 PF01497 Periplasmic binding protein AMED_1985 PF00456 Transketolase, thiamine diphosphate binding domain AMED_1987 PF04055 Radical SAM superfamily AMED_1989 PF07691 PA14 domain AMED_1992 PF02633 Creatinine amidohydrolase AMED_1993 PF01565 FAD binding domain AMED_1995 PF00528 Binding-protein-dependent transport system inner membrane component AMED_1996 PF00005 ABC transporter AMED_1997 PF07969 Amidohydrolase family AMED_1998 PF07883 Cupin domain AMED_1998 PF13560 Helix-turn-helix domain AMED_1999 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_1999 PF00175 Oxidoreductase NAD-binding domain AMED_1999 PF00970 Oxidoreductase FAD-binding domain AMED_2000 PF01979 Amidohydrolase family AMED_2005 PF06114 Domain of unknown function (DUF955) AMED_2006 PF00384 Molybdopterin oxidoreductase AMED_2006 PF01568 Molydopterin dinucleotide binding domain AMED_2006 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMED_2007 PF00144 Beta-lactamase AMED_2008 PF13411 MerR HTH family regulatory protein AMED_2009 PF07690 Major Facilitator Superfamily AMED_2010 PF02597 ThiS family AMED_2012 PF03795 YCII-related domain AMED_2013 PF13460 NADH(P)-binding AMED_2014 PF01435 Peptidase family M48 AMED_2015 PF08240 Alcohol dehydrogenase GroES-like domain AMED_2015 PF13602 Zinc-binding dehydrogenase AMED_2016 PF01381 Helix-turn-helix AMED_2018 PF03795 YCII-related domain AMED_2019 PF04542 Sigma-70 region 2 AMED_2019 PF08281 Sigma-70, region 4 AMED_2020 PF00378 Enoyl-CoA hydratase/isomerase family AMED_2021 PF00440 Bacterial regulatory proteins, tetR family AMED_2022 PF03960 ArsC family AMED_2023 PF00291 Pyridoxal-phosphate dependent enzyme AMED_2024 PF06966 AMED_2024 AMED_2025 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_2026 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_2026 PF03466 LysR substrate binding domain AMED_2027 PF00067 Cytochrome P450 AMED_2028 PF12697 Alpha/beta hydrolase family AMED_2029 PF00486 Transcriptional regulatory protein, C terminal AMED_2029 PF00931 NB-ARC domain AMED_2029 PF01381 Helix-turn-helix AMED_2029 PF03704 Bacterial transcriptional activator domain AMED_2029 PF12862 AMED_2029 AMED_2029 PF13424 Tetratricopeptide repeat AMED_2031 PF08242 Methyltransferase domain AMED_2032 PF00155 Aminotransferase class I and II AMED_2032 PF00392 Bacterial regulatory proteins, gntR family AMED_2033 PF07690 Major Facilitator Superfamily AMED_2034 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMED_2035 PF10939 AMED_2035 AMED_2036 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMED_2036 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AMED_2036 PF13288 DXP reductoisomerase C-terminal domain AMED_2037 PF02163 Peptidase family M50 AMED_2038 PF04551 GcpE protein AMED_2039 PF13489 Methyltransferase domain AMED_2041 PF12833 Helix-turn-helix domain AMED_2042 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_2043 PF13783 AMED_2043 AMED_2044 PF00583 Acetyltransferase (GNAT) family AMED_2044 PF13312 AMED_2044 AMED_2045 PF00905 Penicillin binding protein transpeptidase domain AMED_2045 PF05223 NTF2-like N-terminal transpeptidase domain AMED_2046 PF00557 Metallopeptidase family M24 AMED_2047 PF01061 AMED_2047 AMED_2048 PF00005 ABC transporter AMED_2048 PF13732 AMED_2048 AMED_2049 PF13349 AMED_2049 AMED_2051 PF00392 Bacterial regulatory proteins, gntR family AMED_2051 PF07729 FCD domain AMED_2052 PF07690 Major Facilitator Superfamily AMED_2053 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_2053 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2054 PF13539 D-alanyl-D-alanine carboxypeptidase AMED_2055 PF00089 Trypsin AMED_2056 PF13673 Acetyltransferase (GNAT) domain AMED_2057 PF00155 Aminotransferase class I and II AMED_2058 PF00270 DEAD/DEAH box helicase AMED_2058 PF00271 Helicase conserved C-terminal domain AMED_2059 PF01163 RIO1 family AMED_2060 PF13450 NAD(P)-binding Rossmann-like domain AMED_2065 PF00753 Metallo-beta-lactamase superfamily AMED_2066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_2066 PF03466 LysR substrate binding domain AMED_2067 PF05076 Suppressor of fused protein (SUFU) AMED_2068 PF01266 FAD dependent oxidoreductase AMED_2069 PF03883 AMED_2069 AMED_2070 PF00583 Acetyltransferase (GNAT) family AMED_2072 PF04149 AMED_2072 AMED_2073 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_2074 PF09594 AMED_2074 AMED_2076 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMED_2076 PF03129 Anticodon binding domain AMED_2076 PF04073 Aminoacyl-tRNA editing domain AMED_2079 PF09924 Uncharacterized conserved protein (DUF2156) AMED_2081 PF05593 AMED_2081 AMED_2082 PF12710 haloacid dehalogenase-like hydrolase AMED_2084 PF00072 Response regulator receiver domain AMED_2084 PF00196 Bacterial regulatory proteins, luxR family AMED_2085 PF07730 Histidine kinase AMED_2085 PF13796 AMED_2085 AMED_2087 PF00487 AMED_2087 AMED_2088 PF00175 Oxidoreductase NAD-binding domain AMED_2088 PF00970 Oxidoreductase FAD-binding domain AMED_2089 PF00440 Bacterial regulatory proteins, tetR family AMED_2090 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMED_2090 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMED_2091 PF12769 Domain of unknown function (DUF3814) AMED_2092 PF02233 NAD(P) transhydrogenase beta subunit AMED_2094 PF11774 Lsr2 AMED_2095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_2095 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2097 PF11343 AMED_2097 AMED_2099 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_2099 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_2100 PF00550 Phosphopantetheine attachment site AMED_2101 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_2101 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMED_2102 PF00698 Acyl transferase domain AMED_2103 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_2104 PF13556 PucR C-terminal helix-turn-helix domain AMED_2105 PF00005 ABC transporter AMED_2105 PF13732 AMED_2105 AMED_2106 PF12698 ABC-2 family transporter protein AMED_2107 PF05552 Conserved TM helix AMED_2108 PF04973 AMED_2108 AMED_2109 PF02652 AMED_2109 AMED_2110 PF00440 Bacterial regulatory proteins, tetR family AMED_2111 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_2112 PF01070 FMN-dependent dehydrogenase AMED_2113 PF00456 Transketolase, thiamine diphosphate binding domain AMED_2114 PF11253 AMED_2114 AMED_2115 PF00578 AhpC/TSA family AMED_2116 PF00239 Resolvase, N terminal domain AMED_2116 PF07508 Recombinase AMED_2116 PF13408 Recombinase zinc beta ribbon domain AMED_2118 PF01555 DNA methylase AMED_2119 PF13814 AMED_2119 AMED_2120 PF02534 Type IV secretory system Conjugative DNA transfer AMED_2127 PF14430 AMED_2127 AMED_2128 PF14428 AMED_2128 AMED_2129 PF00089 Trypsin AMED_2132 PF01381 Helix-turn-helix AMED_2133 PF12146 Putative lysophospholipase AMED_2134 PF00899 ThiF family AMED_2136 PF14452 AMED_2136 AMED_2139 PF07690 Major Facilitator Superfamily AMED_2140 PF02627 Carboxymuconolactone decarboxylase family AMED_2141 PF12802 MarR family AMED_2142 PF07883 Cupin domain AMED_2143 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2143 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2143 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2144 PF00106 short chain dehydrogenase AMED_2145 PF00266 Aminotransferase class-V AMED_2146 PF00392 Bacterial regulatory proteins, gntR family AMED_2146 PF07729 FCD domain AMED_2147 PF00149 Calcineurin-like phosphoesterase AMED_2148 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_2148 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_2149 PF00206 Lyase AMED_2149 PF10415 Fumarase C C-terminus AMED_2150 PF06089 AMED_2150 AMED_2151 PF00324 Amino acid permease AMED_2152 PF00392 Bacterial regulatory proteins, gntR family AMED_2152 PF07729 FCD domain AMED_2153 PF02811 PHP domain AMED_2153 PF07733 Bacterial DNA polymerase III alpha subunit AMED_2153 PF14579 Helix-hairpin-helix motif AMED_2154 PF07690 Major Facilitator Superfamily AMED_2155 PF06772 AMED_2155 AMED_2156 PF03734 L,D-transpeptidase catalytic domain AMED_2157 PF01734 Patatin-like phospholipase AMED_2158 PF09335 AMED_2158 AMED_2159 PF04055 Radical SAM superfamily AMED_2159 PF16881 AMED_2159 AMED_2160 PF00106 short chain dehydrogenase AMED_2162 PF00440 Bacterial regulatory proteins, tetR family AMED_2163 PF00296 Luciferase-like monooxygenase AMED_2164 PF03099 Biotin/lipoate A/B protein ligase family AMED_2165 PF01569 PAP2 superfamily AMED_2166 PF01370 NAD dependent epimerase/dehydratase family AMED_2166 PF08338 Domain of unknown function (DUF1731) AMED_2168 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMED_2168 PF00364 Biotin-requiring enzyme AMED_2168 PF02817 e3 binding domain AMED_2169 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_2169 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2171 PF00583 Acetyltransferase (GNAT) family AMED_2173 PF16868 AMED_2173 AMED_2174 PF06808 AMED_2174 AMED_2175 PF00883 Cytosol aminopeptidase family, catalytic domain AMED_2175 PF02789 Cytosol aminopeptidase family, N-terminal domain AMED_2177 PF04167 Protein of unknown function (DUF402) AMED_2179 PF01063 Aminotransferase class IV AMED_2180 PF02277 Phosphoribosyltransferase AMED_2181 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMED_2183 PF00392 Bacterial regulatory proteins, gntR family AMED_2183 PF07702 UTRA domain AMED_2184 PF01259 SAICAR synthetase AMED_2185 PF00248 Aldo/keto reductase family AMED_2187 PF11241 AMED_2187 AMED_2188 PF01521 Iron-sulphur cluster biosynthesis AMED_2190 PF00294 pfkB family carbohydrate kinase AMED_2192 PF00733 Asparagine synthase AMED_2192 PF13537 Glutamine amidotransferase domain AMED_2193 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMED_2194 PF12270 AMED_2194 AMED_2195 PF01965 DJ-1/PfpI family AMED_2195 PF12833 Helix-turn-helix domain AMED_2196 PF00892 EamA-like transporter family AMED_2197 PF00591 Glycosyl transferase family, a/b domain AMED_2197 PF02885 Glycosyl transferase family, helical bundle domain AMED_2200 PF00510 Cytochrome c oxidase subunit III AMED_2201 PF00034 Cytochrome c AMED_2201 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMED_2202 PF00355 Rieske [2Fe-2S] domain AMED_2203 PF13631 Cytochrome b(N-terminal)/b6/petB AMED_2205 PF01037 AsnC family AMED_2206 PF00929 Exonuclease AMED_2206 PF01541 GIY-YIG catalytic domain AMED_2207 PF05991 AMED_2207 AMED_2209 PF00877 NlpC/P60 family AMED_2210 PF00534 Glycosyl transferases group 1 AMED_2210 PF13439 Glycosyltransferase Family 4 AMED_2212 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_2213 PF00067 Cytochrome P450 AMED_2214 PF00202 Aminotransferase class-III AMED_2215 PF00484 Carbonic anhydrase AMED_2215 PF00916 AMED_2215 AMED_2216 PF00484 Carbonic anhydrase AMED_2216 PF00916 AMED_2216 AMED_2217 PF13500 AAA domain AMED_2218 PF04055 Radical SAM superfamily AMED_2218 PF06968 Biotin and Thiamin Synthesis associated domain AMED_2219 PF10821 AMED_2219 AMED_2220 PF01435 Peptidase family M48 AMED_2221 PF02190 ATP-dependent protease La (LON) domain AMED_2222 PF00293 NUDIX domain AMED_2223 PF02445 Quinolinate synthetase A protein AMED_2224 PF00890 FAD binding domain AMED_2224 PF02910 Fumarate reductase flavoprotein C-term AMED_2225 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMED_2225 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMED_2226 PF00082 Subtilase family AMED_2228 PF06259 Alpha/beta hydrolase AMED_2229 PF06013 Proteins of 100 residues with WXG AMED_2232 PF06013 Proteins of 100 residues with WXG AMED_2234 PF00501 AMP-binding enzyme AMED_2234 PF13193 AMP-binding enzyme C-terminal domain AMED_2235 PF00089 Trypsin AMED_2238 PF01580 FtsK/SpoIIIE family AMED_2241 PF06013 Proteins of 100 residues with WXG AMED_2243 PF02575 YbaB/EbfC DNA-binding family AMED_2244 PF08817 WXG100 protein secretion system (Wss), protein YukD AMED_2245 PF17189 AMED_2245 AMED_2246 PF11203 AMED_2246 AMED_2247 PF05108 Protein of unknown function (DUF690) AMED_2248 PF00072 Response regulator receiver domain AMED_2248 PF00196 Bacterial regulatory proteins, luxR family AMED_2249 PF00072 Response regulator receiver domain AMED_2249 PF00196 Bacterial regulatory proteins, luxR family AMED_2250 PF00795 Carbon-nitrogen hydrolase AMED_2251 PF00815 Histidinol dehydrogenase AMED_2252 PF00155 Aminotransferase class I and II AMED_2253 PF00475 Imidazoleglycerol-phosphate dehydratase AMED_2254 PF12706 Beta-lactamase superfamily domain AMED_2256 PF00440 Bacterial regulatory proteins, tetR family AMED_2257 PF06441 Epoxide hydrolase N terminus AMED_2258 PF03176 MMPL family AMED_2259 PF00440 Bacterial regulatory proteins, tetR family AMED_2260 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMED_2261 PF00376 MerR family regulatory protein AMED_2261 PF09278 MerR, DNA binding AMED_2262 PF00456 Transketolase, thiamine diphosphate binding domain AMED_2263 PF02779 Transketolase, pyrimidine binding domain AMED_2264 PF00293 NUDIX domain AMED_2265 PF07978 NIPSNAP AMED_2266 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2266 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2266 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2269 PF00117 Glutamine amidotransferase class-I AMED_2270 PF00977 Histidine biosynthesis protein AMED_2271 PF00106 short chain dehydrogenase AMED_2273 PF00440 Bacterial regulatory proteins, tetR family AMED_2274 PF07045 Protein of unknown function (DUF1330) AMED_2275 PF00583 Acetyltransferase (GNAT) family AMED_2276 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_2277 PF06475 Putative glycolipid-binding AMED_2280 PF04542 Sigma-70 region 2 AMED_2280 PF08281 Sigma-70, region 4 AMED_2281 PF02333 Phytase AMED_2282 PF00977 Histidine biosynthesis protein AMED_2284 PF01502 Phosphoribosyl-AMP cyclohydrolase AMED_2285 PF06993 AMED_2285 AMED_2286 PF04149 AMED_2286 AMED_2287 PF01381 Helix-turn-helix AMED_2288 PF12158 AMED_2288 AMED_2290 PF00440 Bacterial regulatory proteins, tetR family AMED_2291 PF00425 chorismate binding enzyme AMED_2291 PF04715 Anthranilate synthase component I, N terminal region AMED_2292 PF09534 AMED_2292 AMED_2293 PF00218 Indole-3-glycerol phosphate synthase AMED_2294 PF00291 Pyridoxal-phosphate dependent enzyme AMED_2295 PF00290 Tryptophan synthase alpha chain AMED_2296 PF13411 MerR HTH family regulatory protein AMED_2297 PF05685 Putative restriction endonuclease AMED_2298 PF01510 N-acetylmuramoyl-L-alanine amidase AMED_2300 PF00120 Glutamine synthetase, catalytic domain AMED_2300 PF16952 AMED_2300 AMED_2301 PF13520 Amino acid permease AMED_2302 PF04909 Amidohydrolase AMED_2303 PF01546 Peptidase family M20/M25/M40 AMED_2303 PF07687 Peptidase dimerisation domain AMED_2304 PF01790 AMED_2304 AMED_2305 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_2306 PF00310 Glutamine amidotransferases class-II AMED_2306 PF01493 GXGXG motif AMED_2306 PF01645 Conserved region in glutamate synthase AMED_2306 PF04898 Glutamate synthase central domain AMED_2307 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2307 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMED_2310 PF00561 alpha/beta hydrolase fold AMED_2311 PF01474 Class-II DAHP synthetase family AMED_2312 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_2313 PF13560 Helix-turn-helix domain AMED_2314 PF03007 AMED_2314 AMED_2314 PF06974 AMED_2314 AMED_2316 PF01145 SPFH domain / Band 7 family AMED_2316 PF15975 AMED_2316 AMED_2318 PF00069 Protein kinase domain AMED_2318 PF03793 PASTA domain AMED_2320 PF11706 CGNR zinc finger AMED_2321 PF00296 Luciferase-like monooxygenase AMED_2322 PF00494 Squalene/phytoene synthase AMED_2323 PF01593 Flavin containing amine oxidoreductase AMED_2324 PF00348 Polyprenyl synthetase AMED_2325 PF03243 Alkylmercury lyase AMED_2326 PF02219 Methylenetetrahydrofolate reductase AMED_2327 PF05960 Bacterial protein of unknown function (DUF885) AMED_2328 PF00892 EamA-like transporter family AMED_2330 PF04073 Aminoacyl-tRNA editing domain AMED_2332 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_2334 PF00583 Acetyltransferase (GNAT) family AMED_2335 PF01327 Polypeptide deformylase AMED_2336 PF00270 DEAD/DEAH box helicase AMED_2336 PF00271 Helicase conserved C-terminal domain AMED_2336 PF08494 AMED_2336 AMED_2337 PF00455 AMED_2337 AMED_2337 PF08220 DeoR-like helix-turn-helix domain AMED_2338 PF07690 Major Facilitator Superfamily AMED_2339 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMED_2341 PF00012 Hsp70 protein AMED_2342 PF11248 AMED_2342 AMED_2343 PF00154 recA bacterial DNA recombination protein AMED_2344 PF02631 RecX family AMED_2348 PF01081 KDPG and KHG aldolase AMED_2349 PF00920 Dehydratase family AMED_2352 PF00890 FAD binding domain AMED_2352 PF02910 Fumarate reductase flavoprotein C-term AMED_2353 PF13085 2Fe-2S iron-sulfur cluster binding domain AMED_2353 PF13183 4Fe-4S dicluster domain AMED_2354 PF00583 Acetyltransferase (GNAT) family AMED_2355 PF04149 AMED_2355 AMED_2356 PF13560 Helix-turn-helix domain AMED_2357 PF06912 AMED_2357 AMED_2359 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_2360 PF00528 Binding-protein-dependent transport system inner membrane component AMED_2361 PF00528 Binding-protein-dependent transport system inner membrane component AMED_2362 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_2363 PF00005 ABC transporter AMED_2364 PF00072 Response regulator receiver domain AMED_2364 PF00486 Transcriptional regulatory protein, C terminal AMED_2365 PF00512 His Kinase A (phospho-acceptor) domain AMED_2365 PF00672 HAMP domain AMED_2365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_2366 PF16868 AMED_2366 AMED_2367 PF01638 HxlR-like helix-turn-helix AMED_2370 PF01569 PAP2 superfamily AMED_2370 PF12951 AMED_2370 AMED_2371 PF01419 Jacalin-like lectin domain AMED_2371 PF03372 Endonuclease/Exonuclease/phosphatase family AMED_2372 PF00069 Protein kinase domain AMED_2373 PF00652 Ricin-type beta-trefoil lectin domain AMED_2373 PF04616 Glycosyl hydrolases family 43 AMED_2374 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_2376 PF00440 Bacterial regulatory proteins, tetR family AMED_2376 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_2377 PF01494 FAD binding domain AMED_2378 PF00440 Bacterial regulatory proteins, tetR family AMED_2378 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_2379 PF01494 FAD binding domain AMED_2380 PF00919 Uncharacterized protein family UPF0004 AMED_2380 PF04055 Radical SAM superfamily AMED_2383 PF03993 AMED_2383 AMED_2384 PF01715 IPP transferase AMED_2385 PF01678 Diaminopimelate epimerase AMED_2386 PF00133 tRNA synthetases class I (I, L, M and V) AMED_2386 PF08264 Anticodon-binding domain of tRNA AMED_2387 PF05977 Transmembrane secretion effector AMED_2388 PF12840 Helix-turn-helix domain AMED_2389 PF01926 50S ribosome-binding GTPase AMED_2389 PF13167 AMED_2389 AMED_2389 PF16360 AMED_2389 AMED_2391 PF00717 Peptidase S24-like AMED_2391 PF01726 LexA DNA binding domain AMED_2392 PF01476 LysM domain AMED_2393 PF03477 ATP cone domain AMED_2394 PF02867 Ribonucleotide reductase, barrel domain AMED_2394 PF08471 AMED_2394 AMED_2398 PF02525 Flavodoxin-like fold AMED_2399 PF00893 Small Multidrug Resistance protein AMED_2400 PF00326 Prolyl oligopeptidase family AMED_2400 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMED_2401 PF04228 AMED_2401 AMED_2402 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_2403 PF00155 Aminotransferase class I and II AMED_2403 PF00392 Bacterial regulatory proteins, gntR family AMED_2405 PF00571 CBS domain AMED_2406 PF13598 AMED_2406 AMED_2406 PF13600 AMED_2406 AMED_2407 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_2407 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_2408 PF02698 DUF218 domain AMED_2409 PF01565 FAD binding domain AMED_2409 PF08031 Berberine and berberine like AMED_2410 PF00072 Response regulator receiver domain AMED_2410 PF00196 Bacterial regulatory proteins, luxR family AMED_2411 PF07730 Histidine kinase AMED_2412 PF01551 Peptidase family M23 AMED_2413 PF13830 AMED_2413 AMED_2414 PF01370 NAD dependent epimerase/dehydratase family AMED_2415 PF00288 GHMP kinases N terminal domain AMED_2415 PF08544 GHMP kinases C terminal AMED_2415 PF10509 Galactokinase galactose-binding signature AMED_2416 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMED_2416 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMED_2416 PF04023 FeoA domain AMED_2417 PF00581 Rhodanese-like domain AMED_2418 PF00850 Histone deacetylase domain AMED_2419 PF00583 Acetyltransferase (GNAT) family AMED_2419 PF13380 CoA binding domain AMED_2419 PF13549 ATP-grasp domain AMED_2419 PF13607 Succinyl-CoA ligase like flavodoxin domain AMED_2420 PF00144 Beta-lactamase AMED_2421 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2421 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2422 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2422 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2422 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2423 PF13370 4Fe-4S single cluster domain AMED_2424 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_2425 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_2426 PF02405 AMED_2426 AMED_2427 PF02405 AMED_2427 AMED_2428 PF02470 AMED_2428 AMED_2428 PF11887 AMED_2428 AMED_2429 PF02470 AMED_2429 AMED_2430 PF02470 AMED_2430 AMED_2430 PF11887 AMED_2430 AMED_2431 PF02470 AMED_2431 AMED_2432 PF02470 AMED_2432 AMED_2432 PF11887 AMED_2432 AMED_2433 PF02470 AMED_2433 AMED_2437 PF12897 Alanine-glyoxylate amino-transferase AMED_2438 PF13668 Ferritin-like domain AMED_2439 PF01494 FAD binding domain AMED_2440 PF00356 Bacterial regulatory proteins, lacI family AMED_2440 PF13377 Periplasmic binding protein-like domain AMED_2441 PF13416 Bacterial extracellular solute-binding protein AMED_2442 PF00528 Binding-protein-dependent transport system inner membrane component AMED_2443 PF00528 Binding-protein-dependent transport system inner membrane component AMED_2444 PF00232 Glycosyl hydrolase family 1 AMED_2445 PF00501 AMP-binding enzyme AMED_2447 PF00149 Calcineurin-like phosphoesterase AMED_2448 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_2449 PF02374 Anion-transporting ATPase AMED_2451 PF00480 ROK family AMED_2453 PF00293 NUDIX domain AMED_2454 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_2456 PF12146 Putative lysophospholipase AMED_2457 PF01553 Acyltransferase AMED_2458 PF16473 AMED_2458 AMED_2459 PF00793 DAHP synthetase I family AMED_2460 PF00365 Phosphofructokinase AMED_2462 PF04542 Sigma-70 region 2 AMED_2462 PF08281 Sigma-70, region 4 AMED_2463 PF00221 Aromatic amino acid lyase AMED_2464 PF01152 Bacterial-like globin AMED_2465 PF01638 HxlR-like helix-turn-helix AMED_2466 PF01022 Bacterial regulatory protein, arsR family AMED_2467 PF00704 Glycosyl hydrolases family 18 AMED_2468 PF09365 AMED_2468 AMED_2469 PF00224 Pyruvate kinase, barrel domain AMED_2469 PF02887 Pyruvate kinase, alpha/beta domain AMED_2470 PF13622 Thioesterase-like superfamily AMED_2471 PF13560 Helix-turn-helix domain AMED_2472 PF04149 AMED_2472 AMED_2474 PF00196 Bacterial regulatory proteins, luxR family AMED_2474 PF13191 AAA ATPase domain AMED_2475 PF00171 Aldehyde dehydrogenase family AMED_2477 PF00440 Bacterial regulatory proteins, tetR family AMED_2478 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2478 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2478 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2479 PF02515 CoA-transferase family III AMED_2480 PF13302 Acetyltransferase (GNAT) domain AMED_2481 PF00378 Enoyl-CoA hydratase/isomerase family AMED_2484 PF13406 Transglycosylase SLT domain AMED_2486 PF12823 AMED_2486 AMED_2487 PF07690 Major Facilitator Superfamily AMED_2488 PF00440 Bacterial regulatory proteins, tetR family AMED_2489 PF00474 Sodium:solute symporter family AMED_2490 PF04341 AMED_2490 AMED_2491 PF00672 HAMP domain AMED_2491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_2491 PF08376 Nitrate and nitrite sensing AMED_2492 PF03259 Roadblock/LC7 domain AMED_2493 PF05331 AMED_2493 AMED_2494 PF03029 Conserved hypothetical ATP binding protein AMED_2495 PF05988 AMED_2495 AMED_2496 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_2497 PF12840 Helix-turn-helix domain AMED_2498 PF01642 Methylmalonyl-CoA mutase AMED_2498 PF02310 B12 binding domain AMED_2498 PF03308 ArgK protein AMED_2499 PF13649 Methyltransferase domain AMED_2500 PF00296 Luciferase-like monooxygenase AMED_2501 PF00440 Bacterial regulatory proteins, tetR family AMED_2502 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2502 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2502 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2503 PF00176 SNF2 family N-terminal domain AMED_2503 PF00271 Helicase conserved C-terminal domain AMED_2503 PF12419 AMED_2503 AMED_2504 PF04434 AMED_2504 AMED_2505 PF07859 alpha/beta hydrolase fold AMED_2506 PF03007 AMED_2506 AMED_2506 PF06974 AMED_2506 AMED_2507 PF04075 Domain of unknown function (DUF385) AMED_2508 PF00561 alpha/beta hydrolase fold AMED_2509 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2509 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2510 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2511 PF01796 AMED_2511 AMED_2511 PF13452 N-terminal half of MaoC dehydratase AMED_2513 PF00108 Thiolase, N-terminal domain AMED_2514 PF17197 AMED_2514 AMED_2515 PF01687 Riboflavin kinase AMED_2516 PF01575 MaoC like domain AMED_2516 PF13452 N-terminal half of MaoC dehydratase AMED_2517 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_2517 PF00175 Oxidoreductase NAD-binding domain AMED_2517 PF00970 Oxidoreductase FAD-binding domain AMED_2519 PF00355 Rieske [2Fe-2S] domain AMED_2520 PF00890 FAD binding domain AMED_2521 PF00890 FAD binding domain AMED_2522 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2522 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_2523 PF00561 alpha/beta hydrolase fold AMED_2524 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_2525 PF01613 Flavin reductase like domain AMED_2527 PF01713 Smr domain AMED_2528 PF12706 Beta-lactamase superfamily domain AMED_2529 PF00487 AMED_2529 AMED_2530 PF00005 ABC transporter AMED_2532 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_2533 PF12833 Helix-turn-helix domain AMED_2534 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_2534 PF03466 LysR substrate binding domain AMED_2535 PF07690 Major Facilitator Superfamily AMED_2536 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2537 PF13459 4Fe-4S single cluster domain AMED_2538 PF01794 AMED_2538 AMED_2539 PF13628 AMED_2539 AMED_2540 PF03640 AMED_2540 AMED_2541 PF04542 Sigma-70 region 2 AMED_2541 PF04545 Sigma-70, region 4 AMED_2542 PF13490 Putative zinc-finger AMED_2543 PF09362 AMED_2543 AMED_2544 PF03640 AMED_2544 AMED_2545 PF01037 AsnC family AMED_2545 PF13404 AsnC-type helix-turn-helix domain AMED_2546 PF01546 Peptidase family M20/M25/M40 AMED_2546 PF07687 Peptidase dimerisation domain AMED_2548 PF01979 Amidohydrolase family AMED_2549 PF00561 alpha/beta hydrolase fold AMED_2550 PF00108 Thiolase, N-terminal domain AMED_2550 PF02803 Thiolase, C-terminal domain AMED_2551 PF00067 Cytochrome P450 AMED_2552 PF01738 Dienelactone hydrolase family AMED_2553 PF01841 Transglutaminase-like superfamily AMED_2554 PF03631 AMED_2554 AMED_2557 PF01796 AMED_2557 AMED_2557 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) AMED_2558 PF00378 Enoyl-CoA hydratase/isomerase family AMED_2559 PF00501 AMP-binding enzyme AMED_2559 PF13193 AMP-binding enzyme C-terminal domain AMED_2560 PF03060 Nitronate monooxygenase AMED_2561 PF00089 Trypsin AMED_2562 PF13520 Amino acid permease AMED_2563 PF00392 Bacterial regulatory proteins, gntR family AMED_2563 PF07702 UTRA domain AMED_2567 PF05681 AMED_2567 AMED_2567 PF05683 Fumarase C-terminus AMED_2568 PF00140 Sigma-70 factor, region 1 AMED_2568 PF04539 Sigma-70 region 3 AMED_2568 PF04542 Sigma-70 region 2 AMED_2568 PF04545 Sigma-70, region 4 AMED_2569 PF02580 D-Tyr-tRNA(Tyr) deacylase AMED_2570 PF05175 Methyltransferase small domain AMED_2571 PF01546 Peptidase family M20/M25/M40 AMED_2571 PF07687 Peptidase dimerisation domain AMED_2572 PF11298 AMED_2572 AMED_2573 PF00294 pfkB family carbohydrate kinase AMED_2574 PF04227 Indigoidine synthase A like protein AMED_2576 PF07070 AMED_2576 AMED_2577 PF11238 AMED_2577 AMED_2579 PF00873 AcrB/AcrD/AcrF family AMED_2580 PF03631 AMED_2580 AMED_2581 PF04851 Type III restriction enzyme, res subunit AMED_2582 PF13407 Periplasmic binding protein domain AMED_2583 PF00005 ABC transporter AMED_2584 PF02653 AMED_2584 AMED_2585 PF00480 ROK family AMED_2587 PF00892 EamA-like transporter family AMED_2588 PF00120 Glutamine synthetase, catalytic domain AMED_2590 PF13520 Amino acid permease AMED_2591 PF02446 4-alpha-glucanotransferase AMED_2592 PF00128 Alpha amylase, catalytic domain AMED_2592 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMED_2593 PF00128 Alpha amylase, catalytic domain AMED_2594 PF00128 Alpha amylase, catalytic domain AMED_2594 PF11941 Domain of unknown function (DUF3459) AMED_2595 PF00128 Alpha amylase, catalytic domain AMED_2595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMED_2596 PF00128 Alpha amylase, catalytic domain AMED_2596 PF11896 Domain of unknown function (DUF3416) AMED_2597 PF00128 Alpha amylase, catalytic domain AMED_2597 PF16657 AMED_2597 AMED_2598 PF01636 Phosphotransferase enzyme family AMED_2599 PF00128 Alpha amylase, catalytic domain AMED_2599 PF02806 Alpha amylase, C-terminal all-beta domain AMED_2599 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMED_2601 PF00140 Sigma-70 factor, region 1 AMED_2601 PF04539 Sigma-70 region 3 AMED_2601 PF04542 Sigma-70 region 2 AMED_2601 PF04545 Sigma-70, region 4 AMED_2602 PF00480 ROK family AMED_2603 PF00459 Inositol monophosphatase family AMED_2604 PF13399 LytR cell envelope-related transcriptional attenuator AMED_2605 PF13834 AMED_2605 AMED_2606 PF11292 AMED_2606 AMED_2607 PF00692 dUTPase AMED_2608 PF12502 AMED_2608 AMED_2611 PF11361 AMED_2611 AMED_2612 PF02080 TrkA-C domain AMED_2612 PF02254 TrkA-N domain AMED_2613 PF02080 TrkA-C domain AMED_2613 PF02254 TrkA-N domain AMED_2614 PF13520 Amino acid permease AMED_2615 PF01938 TRAM domain AMED_2615 PF05958 tRNA (Uracil-5-)-methyltransferase AMED_2616 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_2617 PF00171 Aldehyde dehydrogenase family AMED_2618 PF02779 Transketolase, pyrimidine binding domain AMED_2618 PF02780 Transketolase, C-terminal domain AMED_2618 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMED_2619 PF13377 Periplasmic binding protein-like domain AMED_2620 PF00171 Aldehyde dehydrogenase family AMED_2621 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_2621 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_2621 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_2622 PF00491 Arginase family AMED_2623 PF00474 Sodium:solute symporter family AMED_2624 PF07905 AMED_2624 AMED_2624 PF13556 PucR C-terminal helix-turn-helix domain AMED_2625 PF00072 Response regulator receiver domain AMED_2625 PF00486 Transcriptional regulatory protein, C terminal AMED_2626 PF00512 His Kinase A (phospho-acceptor) domain AMED_2626 PF00672 HAMP domain AMED_2626 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_2627 PF07859 alpha/beta hydrolase fold AMED_2630 PF00378 Enoyl-CoA hydratase/isomerase family AMED_2630 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_2630 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_2631 PF00108 Thiolase, N-terminal domain AMED_2631 PF02803 Thiolase, C-terminal domain AMED_2632 PF06197 AMED_2632 AMED_2634 PF01425 Amidase AMED_2635 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMED_2635 PF00364 Biotin-requiring enzyme AMED_2635 PF02626 Allophanate hydrolase subunit 2 AMED_2635 PF02682 Allophanate hydrolase subunit 1 AMED_2635 PF02785 Biotin carboxylase C-terminal domain AMED_2635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_2636 PF09347 Domain of unknown function (DUF1989) AMED_2637 PF09347 Domain of unknown function (DUF1989) AMED_2638 PF13520 Amino acid permease AMED_2639 PF00440 Bacterial regulatory proteins, tetR family AMED_2640 PF00570 HRDC domain AMED_2640 PF01612 3'-5' exonuclease AMED_2641 PF00072 Response regulator receiver domain AMED_2641 PF00196 Bacterial regulatory proteins, luxR family AMED_2642 PF11452 AMED_2642 AMED_2643 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMED_2644 PF01593 Flavin containing amine oxidoreductase AMED_2645 PF06778 Chlorite dismutase AMED_2646 PF02515 CoA-transferase family III AMED_2648 PF05114 Protein of unknown function (DUF692) AMED_2651 PF01641 SelR domain AMED_2653 PF00069 Protein kinase domain AMED_2654 PF09335 AMED_2654 AMED_2657 PF00296 Luciferase-like monooxygenase AMED_2658 PF00575 S1 RNA binding domain AMED_2659 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_2660 PF13556 PucR C-terminal helix-turn-helix domain AMED_2661 PF00171 Aldehyde dehydrogenase family AMED_2662 PF01619 Proline dehydrogenase AMED_2663 PF00085 Thioredoxin AMED_2664 PF10944 AMED_2664 AMED_2665 PF03795 YCII-related domain AMED_2666 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_2667 PF04542 Sigma-70 region 2 AMED_2667 PF08281 Sigma-70, region 4 AMED_2668 PF08386 TAP-like protein AMED_2669 PF01068 ATP dependent DNA ligase domain AMED_2669 PF04679 ATP dependent DNA ligase C terminal region AMED_2672 PF03780 AMED_2672 AMED_2674 PF03780 AMED_2674 AMED_2676 PF04542 Sigma-70 region 2 AMED_2676 PF08281 Sigma-70, region 4 AMED_2677 PF01872 RibD C-terminal domain AMED_2678 PF03969 AFG1-like ATPase AMED_2680 PF01266 FAD dependent oxidoreductase AMED_2681 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_2682 PF10009 AMED_2682 AMED_2683 PF00202 Aminotransferase class-III AMED_2684 PF12840 Helix-turn-helix domain AMED_2685 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_2686 PF03976 Polyphosphate kinase 2 (PPK2) AMED_2687 PF00326 Prolyl oligopeptidase family AMED_2687 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMED_2688 PF00296 Luciferase-like monooxygenase AMED_2689 PF02537 AMED_2689 AMED_2690 PF02641 Uncharacterized ACR, COG1993 AMED_2691 PF02537 AMED_2691 AMED_2692 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMED_2693 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMED_2694 PF04183 IucA / IucC family AMED_2694 PF06276 Ferric iron reductase FhuF-like transporter AMED_2695 PF00120 Glutamine synthetase, catalytic domain AMED_2696 PF01565 FAD binding domain AMED_2696 PF08031 Berberine and berberine like AMED_2697 PF03704 Bacterial transcriptional activator domain AMED_2697 PF13191 AAA ATPase domain AMED_2698 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_2698 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_2700 PF03243 Alkylmercury lyase AMED_2701 PF00152 tRNA synthetases class II (D, K and N) AMED_2701 PF01336 OB-fold nucleic acid binding domain AMED_2701 PF02938 GAD domain AMED_2702 PF04087 AMED_2702 AMED_2704 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_2705 PF12850 Calcineurin-like phosphoesterase superfamily domain AMED_2706 PF00067 Cytochrome P450 AMED_2707 PF00440 Bacterial regulatory proteins, tetR family AMED_2708 PF00004 ATPase family associated with various cellular activities (AAA) AMED_2708 PF12002 MgsA AAA+ ATPase C terminal AMED_2708 PF16193 AMED_2708 AMED_2710 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_2710 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_2711 PF06103 AMED_2711 AMED_2713 PF01411 tRNA synthetases class II (A) AMED_2713 PF02272 DHHA1 domain AMED_2713 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMED_2714 PF03652 Uncharacterised protein family (UPF0081) AMED_2715 PF02618 YceG-like family AMED_2716 PF08501 Shikimate dehydrogenase substrate binding domain AMED_2717 PF04229 GrpB protein AMED_2717 PF08241 Methyltransferase domain AMED_2718 PF00440 Bacterial regulatory proteins, tetR family AMED_2720 PF12146 Putative lysophospholipase AMED_2721 PF12840 Helix-turn-helix domain AMED_2722 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_2722 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_2723 PF00144 Beta-lactamase AMED_2724 PF00381 PTS HPr component phosphorylation site AMED_2725 PF02378 Phosphotransferase system, EIIC AMED_2726 PF00392 Bacterial regulatory proteins, gntR family AMED_2726 PF07702 UTRA domain AMED_2727 PF00367 phosphotransferase system, EIIB AMED_2728 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMED_2729 PF00355 Rieske [2Fe-2S] domain AMED_2731 PF04542 Sigma-70 region 2 AMED_2731 PF04545 Sigma-70, region 4 AMED_2732 PF13490 Putative zinc-finger AMED_2733 PF01264 Chorismate synthase AMED_2734 PF01202 Shikimate kinase AMED_2735 PF01761 3-dehydroquinate synthase AMED_2736 PF01220 Dehydroquinase class II AMED_2737 PF13302 Acetyltransferase (GNAT) domain AMED_2737 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_2740 PF00557 Metallopeptidase family M24 AMED_2740 PF01321 Creatinase/Prolidase N-terminal domain AMED_2741 PF01132 Elongation factor P (EF-P) OB domain AMED_2741 PF08207 Elongation factor P (EF-P) KOW-like domain AMED_2741 PF09285 Elongation factor P, C-terminal AMED_2742 PF01029 NusB family AMED_2743 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_2744 PF01381 Helix-turn-helix AMED_2745 PF00156 Phosphoribosyl transferase domain AMED_2746 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMED_2746 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMED_2747 PF01979 Amidohydrolase family AMED_2749 PF00117 Glutamine amidotransferase class-I AMED_2749 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMED_2750 PF13175 AAA ATPase domain AMED_2750 PF13304 AAA domain AMED_2751 PF14103 AMED_2751 AMED_2752 PF02142 MGS-like domain AMED_2752 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_2752 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMED_2753 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMED_2755 PF00625 Guanylate kinase AMED_2756 PF01192 RNA polymerase Rpb6 AMED_2757 PF02441 Flavoprotein AMED_2757 PF04127 DNA / pantothenate metabolism flavoprotein AMED_2758 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMED_2758 PF02772 S-adenosylmethionine synthetase, central domain AMED_2758 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMED_2761 PF08757 AMED_2761 AMED_2763 PF01019 Gamma-glutamyltranspeptidase AMED_2764 PF00551 Formyl transferase AMED_2764 PF02911 Formyl transferase, C-terminal domain AMED_2765 PF01029 NusB family AMED_2765 PF01189 NOL1/NOP2/sun family AMED_2766 PF02441 Flavoprotein AMED_2767 PF00144 Beta-lactamase AMED_2768 PF00245 Alkaline phosphatase AMED_2769 PF00072 Response regulator receiver domain AMED_2769 PF00196 Bacterial regulatory proteins, luxR family AMED_2770 PF07730 Histidine kinase AMED_2771 PF00834 Ribulose-phosphate 3 epimerase family AMED_2772 PF00677 Lumazine binding domain AMED_2773 PF00925 GTP cyclohydrolase II AMED_2773 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMED_2774 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMED_2775 PF10756 AMED_2775 AMED_2776 PF03372 Endonuclease/Exonuclease/phosphatase family AMED_2777 PF00089 Trypsin AMED_2778 PF01541 GIY-YIG catalytic domain AMED_2778 PF02151 UvrB/uvrC motif AMED_2778 PF08459 UvrC Helix-hairpin-helix N-terminal AMED_2778 PF14520 Helix-hairpin-helix domain AMED_2779 PF03668 AMED_2779 AMED_2780 PF01933 Uncharacterised protein family UPF0052 AMED_2781 PF02650 WhiA C-terminal HTH domain AMED_2781 PF10298 WhiA N-terminal LAGLIDADG-like domain AMED_2781 PF14527 WhiA LAGLIDADG-like domain AMED_2782 PF00535 Glycosyl transferase family 2 AMED_2783 PF04116 AMED_2783 AMED_2784 PF00440 Bacterial regulatory proteins, tetR family AMED_2787 PF00041 Fibronectin type III domain AMED_2787 PF01161 Phosphatidylethanolamine-binding protein AMED_2787 PF03422 Carbohydrate binding module (family 6) AMED_2787 PF07995 Glucose / Sorbosone dehydrogenase AMED_2788 PF01218 Coproporphyrinogen III oxidase AMED_2789 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_2793 PF00296 Luciferase-like monooxygenase AMED_2794 PF13474 SnoaL-like domain AMED_2795 PF12840 Helix-turn-helix domain AMED_2796 PF01810 AMED_2796 AMED_2797 PF06224 AMED_2797 AMED_2798 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMED_2798 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMED_2799 PF00162 Phosphoglycerate kinase AMED_2800 PF00121 Triosephosphate isomerase AMED_2801 PF03840 Preprotein translocase SecG subunit AMED_2802 PF13397 Domain of unknown function (DUF4109) AMED_2803 PF07730 Histidine kinase AMED_2804 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMED_2805 PF10128 AMED_2805 AMED_2806 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMED_2806 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMED_2807 PF00342 Phosphoglucose isomerase AMED_2808 PF00923 Transaldolase AMED_2809 PF00456 Transketolase, thiamine diphosphate binding domain AMED_2809 PF02779 Transketolase, pyrimidine binding domain AMED_2809 PF02780 Transketolase, C-terminal domain AMED_2810 PF01040 UbiA prenyltransferase family AMED_2812 PF10824 Protein of unknown function (DUF2580) AMED_2816 PF13245 Part of AAA domain AMED_2816 PF13538 UvrD-like helicase C-terminal domain AMED_2817 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMED_2818 PF00107 Zinc-binding dehydrogenase AMED_2818 PF08240 Alcohol dehydrogenase GroES-like domain AMED_2823 PF00487 AMED_2823 AMED_2824 PF02628 AMED_2824 AMED_2826 PF01061 AMED_2826 AMED_2827 PF00005 ABC transporter AMED_2829 PF13518 Helix-turn-helix domain AMED_2830 PF01458 Uncharacterized protein family (UPF0051) AMED_2831 PF01458 Uncharacterized protein family (UPF0051) AMED_2832 PF00005 ABC transporter AMED_2833 PF00266 Aminotransferase class-V AMED_2834 PF01592 NifU-like N terminal domain AMED_2835 PF01883 Domain of unknown function DUF59 AMED_2836 PF13803 AMED_2836 AMED_2837 PF02694 AMED_2837 AMED_2839 PF03109 AMED_2839 AMED_2840 PF02031 Streptomyces extracellular neutral proteinase (M7) family AMED_2841 PF07730 Histidine kinase AMED_2842 PF00072 Response regulator receiver domain AMED_2842 PF00196 Bacterial regulatory proteins, luxR family AMED_2843 PF08241 Methyltransferase domain AMED_2845 PF00009 Elongation factor Tu GTP binding domain AMED_2845 PF01583 Adenylylsulphate kinase AMED_2846 PF01507 Phosphoadenosine phosphosulfate reductase family AMED_2847 PF13577 SnoaL-like domain AMED_2849 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_2850 PF13469 Sulfotransferase family AMED_2851 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMED_2852 PF00440 Bacterial regulatory proteins, tetR family AMED_2854 PF00563 EAL domain AMED_2854 PF00990 GGDEF domain AMED_2855 PF12840 Helix-turn-helix domain AMED_2856 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_2857 PF03793 PASTA domain AMED_2858 PF01966 HD domain AMED_2859 PF00082 Subtilase family AMED_2859 PF01483 Proprotein convertase P-domain AMED_2861 PF00005 ABC transporter AMED_2861 PF12848 ABC transporter AMED_2863 PF09594 AMED_2863 AMED_2864 PF00296 Luciferase-like monooxygenase AMED_2865 PF12802 MarR family AMED_2866 PF00005 ABC transporter AMED_2866 PF00664 ABC transporter transmembrane region AMED_2867 PF00144 Beta-lactamase AMED_2868 PF13580 SIS domain AMED_2869 PF12146 Putative lysophospholipase AMED_2870 PF02353 Mycolic acid cyclopropane synthetase AMED_2871 PF03816 Cell envelope-related transcriptional attenuator domain AMED_2872 PF13302 Acetyltransferase (GNAT) domain AMED_2873 PF00578 AhpC/TSA family AMED_2874 PF00563 EAL domain AMED_2874 PF00990 GGDEF domain AMED_2874 PF08448 PAS fold AMED_2875 PF00067 Cytochrome P450 AMED_2876 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_2877 PF00293 NUDIX domain AMED_2878 PF00268 Ribonucleotide reductase, small chain AMED_2879 PF00317 Ribonucleotide reductase, all-alpha domain AMED_2879 PF02867 Ribonucleotide reductase, barrel domain AMED_2879 PF03477 ATP cone domain AMED_2880 PF06314 Acetoacetate decarboxylase (ADC) AMED_2881 PF00378 Enoyl-CoA hydratase/isomerase family AMED_2884 PF08608 Wyosine base formation AMED_2884 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_2885 PF07287 AMED_2885 AMED_2886 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2886 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2886 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2887 PF01039 Carboxyl transferase domain AMED_2888 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMED_2888 PF00364 Biotin-requiring enzyme AMED_2888 PF02785 Biotin carboxylase C-terminal domain AMED_2888 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_2889 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_2889 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_2889 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_2890 PF00106 short chain dehydrogenase AMED_2891 PF00440 Bacterial regulatory proteins, tetR family AMED_2893 PF03023 AMED_2893 AMED_2895 PF00704 Glycosyl hydrolases family 18 AMED_2896 PF00990 GGDEF domain AMED_2898 PF03171 2OG-Fe(II) oxygenase superfamily AMED_2898 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AMED_2899 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMED_2900 PF08279 HTH domain AMED_2901 PF13280 AMED_2901 AMED_2902 PF06224 AMED_2902 AMED_2903 PF06224 AMED_2903 AMED_2904 PF00440 Bacterial regulatory proteins, tetR family AMED_2905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_2905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMED_2906 PF00440 Bacterial regulatory proteins, tetR family AMED_2907 PF03664 Glycosyl hydrolase family 62 AMED_2907 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_2910 PF04075 Domain of unknown function (DUF385) AMED_2911 PF00440 Bacterial regulatory proteins, tetR family AMED_2912 PF13411 MerR HTH family regulatory protein AMED_2915 PF00400 WD domain, G-beta repeat AMED_2916 PF01494 FAD binding domain AMED_2918 PF01494 FAD binding domain AMED_2919 PF01037 AsnC family AMED_2919 PF13404 AsnC-type helix-turn-helix domain AMED_2922 PF12770 AMED_2922 AMED_2924 PF12697 Alpha/beta hydrolase family AMED_2925 PF00440 Bacterial regulatory proteins, tetR family AMED_2928 PF12802 MarR family AMED_2930 PF00561 alpha/beta hydrolase fold AMED_2930 PF08386 TAP-like protein AMED_2931 PF00072 Response regulator receiver domain AMED_2931 PF00196 Bacterial regulatory proteins, luxR family AMED_2932 PF07730 Histidine kinase AMED_2934 PF07291 AMED_2934 AMED_2940 PF00082 Subtilase family AMED_2941 PF13377 Periplasmic binding protein-like domain AMED_2942 PF00037 4Fe-4S binding domain AMED_2943 PF00440 Bacterial regulatory proteins, tetR family AMED_2944 PF00440 Bacterial regulatory proteins, tetR family AMED_2945 PF00106 short chain dehydrogenase AMED_2946 PF02566 OsmC-like protein AMED_2947 PF01047 MarR family AMED_2948 PF04978 Protein of unknown function (DUF664) AMED_2949 PF06966 AMED_2949 AMED_2950 PF02353 Mycolic acid cyclopropane synthetase AMED_2951 PF01593 Flavin containing amine oxidoreductase AMED_2952 PF07103 AMED_2952 AMED_2953 PF04542 Sigma-70 region 2 AMED_2953 PF08281 Sigma-70, region 4 AMED_2954 PF10099 AMED_2954 AMED_2955 PF00091 Tubulin/FtsZ family, GTPase domain AMED_2955 PF12327 FtsZ family, C-terminal domain AMED_2956 PF02578 Multi-copper polyphenol oxidoreductase laccase AMED_2957 PF01168 Alanine racemase, N-terminal domain AMED_2958 PF04472 Protein of unknown function (DUF552) AMED_2959 PF02325 AMED_2959 AMED_2960 PF05103 DivIVA protein AMED_2962 PF12840 Helix-turn-helix domain AMED_2963 PF07690 Major Facilitator Superfamily AMED_2964 PF00133 tRNA synthetases class I (I, L, M and V) AMED_2964 PF08264 Anticodon-binding domain of tRNA AMED_2965 PF00905 Penicillin binding protein transpeptidase domain AMED_2965 PF05223 NTF2-like N-terminal transpeptidase domain AMED_2966 PF12840 Helix-turn-helix domain AMED_2967 PF00999 Sodium/hydrogen exchanger family AMED_2967 PF02080 TrkA-C domain AMED_2968 PF00266 Aminotransferase class-V AMED_2970 PF01252 AMED_2970 AMED_2971 PF00849 RNA pseudouridylate synthase AMED_2972 PF13404 AsnC-type helix-turn-helix domain AMED_2973 PF05960 Bacterial protein of unknown function (DUF885) AMED_2974 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_2974 PF09298 Fumarylacetoacetase N-terminal AMED_2975 PF00296 Luciferase-like monooxygenase AMED_2976 PF04203 Sortase family AMED_2977 PF02541 Ppx/GppA phosphatase family AMED_2978 PF03632 Glycosyl hydrolase family 65 central catalytic domain AMED_2978 PF03633 Glycosyl hydrolase family 65, C-terminal domain AMED_2978 PF03636 Glycosyl hydrolase family 65, N-terminal domain AMED_2979 PF13419 Haloacid dehalogenase-like hydrolase AMED_2980 PF12840 Helix-turn-helix domain AMED_2981 PF03061 Thioesterase superfamily AMED_2982 PF12680 SnoaL-like domain AMED_2983 PF12802 MarR family AMED_2985 PF00480 ROK family AMED_2985 PF12802 MarR family AMED_2986 PF04248 Domain of unknown function (DUF427) AMED_2987 PF03055 Retinal pigment epithelial membrane protein AMED_2989 PF03551 Transcriptional regulator PadR-like family AMED_2989 PF10400 Virulence activator alpha C-term AMED_2991 PF04542 Sigma-70 region 2 AMED_2991 PF08281 Sigma-70, region 4 AMED_2992 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_2993 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_2993 PF01799 [2Fe-2S] binding domain AMED_2994 PF13556 PucR C-terminal helix-turn-helix domain AMED_2996 PF00296 Luciferase-like monooxygenase AMED_2997 PF00440 Bacterial regulatory proteins, tetR family AMED_2998 PF00106 short chain dehydrogenase AMED_2999 PF00248 Aldo/keto reductase family AMED_3000 PF00004 ATPase family associated with various cellular activities (AAA) AMED_3001 PF05762 VWA domain containing CoxE-like protein AMED_3002 PF00962 Adenosine/AMP deaminase AMED_3003 PF14013 AMED_3003 AMED_3004 PF00270 DEAD/DEAH box helicase AMED_3004 PF00271 Helicase conserved C-terminal domain AMED_3004 PF00570 HRDC domain AMED_3004 PF09382 RQC domain AMED_3004 PF16124 AMED_3004 AMED_3006 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3009 PF04978 Protein of unknown function (DUF664) AMED_3010 PF00376 MerR family regulatory protein AMED_3010 PF09278 MerR, DNA binding AMED_3011 PF03358 NADPH-dependent FMN reductase AMED_3013 PF00512 His Kinase A (phospho-acceptor) domain AMED_3013 PF00672 HAMP domain AMED_3013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3014 PF00072 Response regulator receiver domain AMED_3014 PF00486 Transcriptional regulatory protein, C terminal AMED_3015 PF01569 PAP2 superfamily AMED_3016 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMED_3018 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_3018 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_3018 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_3019 PF00392 Bacterial regulatory proteins, gntR family AMED_3019 PF07729 FCD domain AMED_3020 PF00561 alpha/beta hydrolase fold AMED_3021 PF02678 Pirin AMED_3021 PF05726 Pirin C-terminal cupin domain AMED_3023 PF00436 Single-strand binding protein family AMED_3025 PF17032 AMED_3025 AMED_3026 PF04075 Domain of unknown function (DUF385) AMED_3027 PF00905 Penicillin binding protein transpeptidase domain AMED_3027 PF00912 Transglycosylase AMED_3028 PF01061 AMED_3028 AMED_3029 PF00005 ABC transporter AMED_3030 PF00005 ABC transporter AMED_3031 PF12802 MarR family AMED_3032 PF12840 Helix-turn-helix domain AMED_3033 PF00107 Zinc-binding dehydrogenase AMED_3033 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3035 PF06983 3-demethylubiquinone-9 3-methyltransferase AMED_3036 PF08445 FR47-like protein AMED_3037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3038 PF00135 Carboxylesterase family AMED_3039 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_3039 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_3040 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_3040 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_3041 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_3041 PF01799 [2Fe-2S] binding domain AMED_3042 PF00440 Bacterial regulatory proteins, tetR family AMED_3044 PF00171 Aldehyde dehydrogenase family AMED_3046 PF00392 Bacterial regulatory proteins, gntR family AMED_3046 PF07702 UTRA domain AMED_3048 PF00107 Zinc-binding dehydrogenase AMED_3048 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3049 PF07228 Stage II sporulation protein E (SpoIIE) AMED_3050 PF07228 Stage II sporulation protein E (SpoIIE) AMED_3051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3052 PF01740 STAS domain AMED_3053 PF01740 STAS domain AMED_3053 PF14361 AMED_3053 AMED_3054 PF01047 MarR family AMED_3055 PF07228 Stage II sporulation protein E (SpoIIE) AMED_3057 PF00011 Hsp20/alpha crystallin family AMED_3058 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3059 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMED_3060 PF00128 Alpha amylase, catalytic domain AMED_3060 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMED_3061 PF05067 Manganese containing catalase AMED_3063 PF05368 NmrA-like family AMED_3064 PF01638 HxlR-like helix-turn-helix AMED_3066 PF05270 Alpha-L-arabinofuranosidase B (ABFB) AMED_3066 PF09206 Alpha-L-arabinofuranosidase B, catalytic AMED_3068 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_3070 PF00356 Bacterial regulatory proteins, lacI family AMED_3070 PF13377 Periplasmic binding protein-like domain AMED_3071 PF13416 Bacterial extracellular solute-binding protein AMED_3072 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3073 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3074 PF01204 Trehalase AMED_3075 PF01670 Glycosyl hydrolase family 12 AMED_3076 PF00440 Bacterial regulatory proteins, tetR family AMED_3077 PF00248 Aldo/keto reductase family AMED_3078 PF01965 DJ-1/PfpI family AMED_3078 PF12833 Helix-turn-helix domain AMED_3079 PF00248 Aldo/keto reductase family AMED_3080 PF06983 3-demethylubiquinone-9 3-methyltransferase AMED_3081 PF08279 HTH domain AMED_3081 PF13280 AMED_3081 AMED_3082 PF00733 Asparagine synthase AMED_3083 PF00731 AIR carboxylase AMED_3084 PF09861 Domain of unknown function (DUF2088) AMED_3085 PF04909 Amidohydrolase AMED_3086 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_3087 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_3087 PF13378 Enolase C-terminal domain-like AMED_3088 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3089 PF13407 Periplasmic binding protein domain AMED_3090 PF00005 ABC transporter AMED_3091 PF02653 AMED_3091 AMED_3092 PF00248 Aldo/keto reductase family AMED_3093 PF01120 Alpha-L-fucosidase AMED_3093 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3093 PF16757 AMED_3093 AMED_3094 PF00392 Bacterial regulatory proteins, gntR family AMED_3094 PF07729 FCD domain AMED_3095 PF12680 SnoaL-like domain AMED_3096 PF00440 Bacterial regulatory proteins, tetR family AMED_3097 PF00356 Bacterial regulatory proteins, lacI family AMED_3097 PF13377 Periplasmic binding protein-like domain AMED_3098 PF13377 Periplasmic binding protein-like domain AMED_3099 PF00501 AMP-binding enzyme AMED_3099 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_3099 PF13193 AMP-binding enzyme C-terminal domain AMED_3100 PF00561 alpha/beta hydrolase fold AMED_3101 PF11774 Lsr2 AMED_3102 PF00501 AMP-binding enzyme AMED_3102 PF00550 Phosphopantetheine attachment site AMED_3102 PF00668 Condensation domain AMED_3102 PF13193 AMP-binding enzyme C-terminal domain AMED_3102 PF13745 HxxPF-repeated domain AMED_3103 PF03621 MbtH-like protein AMED_3104 PF00144 Beta-lactamase AMED_3105 PF00501 AMP-binding enzyme AMED_3105 PF00550 Phosphopantetheine attachment site AMED_3105 PF00668 Condensation domain AMED_3105 PF13193 AMP-binding enzyme C-terminal domain AMED_3105 PF13745 HxxPF-repeated domain AMED_3106 PF05977 Transmembrane secretion effector AMED_3107 PF00067 Cytochrome P450 AMED_3109 PF07336 Protein of unknown function (DUF1470) AMED_3109 PF11706 CGNR zinc finger AMED_3111 PF01261 Xylose isomerase-like TIM barrel AMED_3112 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3112 PF13602 Zinc-binding dehydrogenase AMED_3113 PF01966 HD domain AMED_3114 PF03067 Chitin binding domain AMED_3115 PF12706 Beta-lactamase superfamily domain AMED_3116 PF12277 AMED_3116 AMED_3117 PF07332 AMED_3117 AMED_3119 PF13411 MerR HTH family regulatory protein AMED_3120 PF03364 Polyketide cyclase / dehydrase and lipid transport AMED_3121 PF13466 STAS domain AMED_3122 PF04972 BON domain AMED_3122 PF14907 Uncharacterised nucleotidyltransferase AMED_3123 PF00149 Calcineurin-like phosphoesterase AMED_3124 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_3125 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3125 PF13602 Zinc-binding dehydrogenase AMED_3126 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3127 PF00106 short chain dehydrogenase AMED_3128 PF01872 RibD C-terminal domain AMED_3129 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3130 PF00703 Glycosyl hydrolases family 2 AMED_3130 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_3130 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_3130 PF16355 AMED_3130 AMED_3132 PF00501 AMP-binding enzyme AMED_3133 PF00501 AMP-binding enzyme AMED_3133 PF13193 AMP-binding enzyme C-terminal domain AMED_3134 PF02126 Phosphotriesterase family AMED_3135 PF00440 Bacterial regulatory proteins, tetR family AMED_3136 PF00561 alpha/beta hydrolase fold AMED_3138 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3138 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3139 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3139 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3139 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3140 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3141 PF01636 Phosphotransferase enzyme family AMED_3142 PF01575 MaoC like domain AMED_3143 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3144 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_3144 PF13378 Enolase C-terminal domain-like AMED_3145 PF00392 Bacterial regulatory proteins, gntR family AMED_3145 PF07729 FCD domain AMED_3146 PF01547 Bacterial extracellular solute-binding protein AMED_3147 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3148 PF03737 Demethylmenaquinone methyltransferase AMED_3149 PF00069 Protein kinase domain AMED_3150 PF00486 Transcriptional regulatory protein, C terminal AMED_3150 PF03704 Bacterial transcriptional activator domain AMED_3151 PF01040 UbiA prenyltransferase family AMED_3152 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3152 PF07730 Histidine kinase AMED_3153 PF00072 Response regulator receiver domain AMED_3153 PF00196 Bacterial regulatory proteins, luxR family AMED_3156 PF07690 Major Facilitator Superfamily AMED_3158 PF00512 His Kinase A (phospho-acceptor) domain AMED_3158 PF00672 HAMP domain AMED_3158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3159 PF00072 Response regulator receiver domain AMED_3159 PF00486 Transcriptional regulatory protein, C terminal AMED_3161 PF12730 AMED_3161 AMED_3162 PF00005 ABC transporter AMED_3165 PF13460 NADH(P)-binding AMED_3166 PF00440 Bacterial regulatory proteins, tetR family AMED_3167 PF03551 Transcriptional regulator PadR-like family AMED_3168 PF00005 ABC transporter AMED_3169 PF02687 AMED_3169 AMED_3171 PF00533 BRCA1 C Terminus (BRCT) domain AMED_3171 PF01653 NAD-dependent DNA ligase adenylation domain AMED_3171 PF03120 NAD-dependent DNA ligase OB-fold domain AMED_3171 PF12826 Helix-hairpin-helix motif AMED_3172 PF00296 Luciferase-like monooxygenase AMED_3173 PF00578 AhpC/TSA family AMED_3174 PF04542 Sigma-70 region 2 AMED_3174 PF08281 Sigma-70, region 4 AMED_3175 PF03259 Roadblock/LC7 domain AMED_3178 PF06441 Epoxide hydrolase N terminus AMED_3179 PF08279 HTH domain AMED_3179 PF13280 AMED_3179 AMED_3180 PF07690 Major Facilitator Superfamily AMED_3181 PF13714 Phosphoenolpyruvate phosphomutase AMED_3182 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_3183 PF04542 Sigma-70 region 2 AMED_3183 PF08281 Sigma-70, region 4 AMED_3187 PF03741 AMED_3187 AMED_3189 PF00128 Alpha amylase, catalytic domain AMED_3190 PF10022 AMED_3190 AMED_3191 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_3191 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_3192 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3193 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3194 PF13416 Bacterial extracellular solute-binding protein AMED_3195 PF07940 Heparinase II/III-like protein AMED_3196 PF08220 DeoR-like helix-turn-helix domain AMED_3196 PF13377 Periplasmic binding protein-like domain AMED_3197 PF00069 Protein kinase domain AMED_3198 PF00356 Bacterial regulatory proteins, lacI family AMED_3198 PF13377 Periplasmic binding protein-like domain AMED_3199 PF00069 Protein kinase domain AMED_3199 PF00553 Cellulose binding domain AMED_3200 PF00069 Protein kinase domain AMED_3200 PF00553 Cellulose binding domain AMED_3201 PF01740 STAS domain AMED_3202 PF03916 AMED_3202 AMED_3203 PF13247 4Fe-4S dicluster domain AMED_3206 PF00083 Sugar (and other) transporter AMED_3207 PF13466 STAS domain AMED_3209 PF04978 Protein of unknown function (DUF664) AMED_3210 PF13489 Methyltransferase domain AMED_3211 PF07883 Cupin domain AMED_3211 PF13560 Helix-turn-helix domain AMED_3213 PF13358 DDE superfamily endonuclease AMED_3213 PF13565 AMED_3213 AMED_3214 PF00144 Beta-lactamase AMED_3215 PF00122 E1-E2 ATPase AMED_3215 PF00689 Cation transporting ATPase, C-terminus AMED_3215 PF00702 haloacid dehalogenase-like hydrolase AMED_3216 PF06803 AMED_3216 AMED_3217 PF00296 Luciferase-like monooxygenase AMED_3218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_3218 PF03466 LysR substrate binding domain AMED_3220 PF00890 FAD binding domain AMED_3220 PF02910 Fumarate reductase flavoprotein C-term AMED_3221 PF12838 4Fe-4S dicluster domain AMED_3221 PF13085 2Fe-2S iron-sulfur cluster binding domain AMED_3222 PF12840 Helix-turn-helix domain AMED_3223 PF07690 Major Facilitator Superfamily AMED_3227 PF01047 MarR family AMED_3228 PF04185 Phosphoesterase family AMED_3228 PF05506 AMED_3228 AMED_3229 PF07561 AMED_3229 AMED_3230 PF00891 O-methyltransferase AMED_3231 PF01381 Helix-turn-helix AMED_3231 PF07883 Cupin domain AMED_3232 PF01266 FAD dependent oxidoreductase AMED_3233 PF13510 2Fe-2S iron-sulfur cluster binding domain AMED_3234 PF04324 BFD-like [2Fe-2S] binding domain AMED_3234 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_3235 PF00701 Dihydrodipicolinate synthetase family AMED_3236 PF05544 Proline racemase AMED_3238 PF00027 Cyclic nucleotide-binding domain AMED_3239 PF00027 Cyclic nucleotide-binding domain AMED_3241 PF08241 Methyltransferase domain AMED_3242 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3243 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3244 PF13416 Bacterial extracellular solute-binding protein AMED_3245 PF11350 AMED_3245 AMED_3246 PF01522 Polysaccharide deacetylase AMED_3253 PF01594 AMED_3253 AMED_3254 PF04616 Glycosyl hydrolases family 43 AMED_3255 PF01068 ATP dependent DNA ligase domain AMED_3255 PF04679 ATP dependent DNA ligase C terminal region AMED_3256 PF00440 Bacterial regulatory proteins, tetR family AMED_3257 PF12697 Alpha/beta hydrolase family AMED_3258 PF08241 Methyltransferase domain AMED_3259 PF13419 Haloacid dehalogenase-like hydrolase AMED_3261 PF14325 AMED_3261 AMED_3265 PF09954 AMED_3265 AMED_3266 PF04909 Amidohydrolase AMED_3267 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_3267 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_3268 PF00501 AMP-binding enzyme AMED_3268 PF13193 AMP-binding enzyme C-terminal domain AMED_3268 PF16177 AMED_3268 AMED_3269 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3270 PF00501 AMP-binding enzyme AMED_3270 PF13193 AMP-binding enzyme C-terminal domain AMED_3271 PF00107 Zinc-binding dehydrogenase AMED_3271 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3272 PF00171 Aldehyde dehydrogenase family AMED_3274 PF13466 STAS domain AMED_3275 PF01370 NAD dependent epimerase/dehydratase family AMED_3276 PF00440 Bacterial regulatory proteins, tetR family AMED_3279 PF01566 AMED_3279 AMED_3281 PF01569 PAP2 superfamily AMED_3282 PF13581 Histidine kinase-like ATPase domain AMED_3282 PF14417 AMED_3282 AMED_3284 PF00501 AMP-binding enzyme AMED_3284 PF00550 Phosphopantetheine attachment site AMED_3284 PF13193 AMP-binding enzyme C-terminal domain AMED_3285 PF00553 Cellulose binding domain AMED_3285 PF04616 Glycosyl hydrolases family 43 AMED_3286 PF03422 Carbohydrate binding module (family 6) AMED_3286 PF04616 Glycosyl hydrolases family 43 AMED_3287 PF00331 Glycosyl hydrolase family 10 AMED_3287 PF00553 Cellulose binding domain AMED_3288 PF00553 Cellulose binding domain AMED_3288 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_3289 PF01670 Glycosyl hydrolase family 12 AMED_3290 PF00652 Ricin-type beta-trefoil lectin domain AMED_3290 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_3291 PF01120 Alpha-L-fucosidase AMED_3291 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3292 PF00652 Ricin-type beta-trefoil lectin domain AMED_3292 PF09206 Alpha-L-arabinofuranosidase B, catalytic AMED_3293 PF00652 Ricin-type beta-trefoil lectin domain AMED_3293 PF13229 Right handed beta helix region AMED_3294 PF00392 Bacterial regulatory proteins, gntR family AMED_3294 PF07729 FCD domain AMED_3295 PF02230 Phospholipase/Carboxylesterase AMED_3295 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3296 PF00356 Bacterial regulatory proteins, lacI family AMED_3296 PF13377 Periplasmic binding protein-like domain AMED_3297 PF00652 Ricin-type beta-trefoil lectin domain AMED_3297 PF09206 Alpha-L-arabinofuranosidase B, catalytic AMED_3298 PF01229 Glycosyl hydrolases family 39 AMED_3298 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3299 PF09995 AMED_3299 AMED_3300 PF00440 Bacterial regulatory proteins, tetR family AMED_3301 PF04542 Sigma-70 region 2 AMED_3301 PF08281 Sigma-70, region 4 AMED_3304 PF00106 short chain dehydrogenase AMED_3305 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_3305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_3305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_3306 PF12802 MarR family AMED_3307 PF06772 AMED_3307 AMED_3308 PF00672 HAMP domain AMED_3308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3309 PF03259 Roadblock/LC7 domain AMED_3310 PF05331 AMED_3310 AMED_3311 PF03707 AMED_3311 AMED_3313 PF00392 Bacterial regulatory proteins, gntR family AMED_3313 PF07702 UTRA domain AMED_3314 PF00728 Glycosyl hydrolase family 20, catalytic domain AMED_3314 PF02838 Glycosyl hydrolase family 20, domain 2 AMED_3315 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3316 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3317 PF01547 Bacterial extracellular solute-binding protein AMED_3318 PF02839 Carbohydrate binding domain AMED_3319 PF00291 Pyridoxal-phosphate dependent enzyme AMED_3320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_3321 PF01022 Bacterial regulatory protein, arsR family AMED_3321 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMED_3322 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3322 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3322 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3323 PF00196 Bacterial regulatory proteins, luxR family AMED_3324 PF09990 AMED_3324 AMED_3325 PF07690 Major Facilitator Superfamily AMED_3326 PF00990 GGDEF domain AMED_3327 PF00356 Bacterial regulatory proteins, lacI family AMED_3327 PF13377 Periplasmic binding protein-like domain AMED_3328 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AMED_3333 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_3334 PF00440 Bacterial regulatory proteins, tetR family AMED_3335 PF00089 Trypsin AMED_3336 PF00440 Bacterial regulatory proteins, tetR family AMED_3336 PF16859 AMED_3336 AMED_3338 PF04542 Sigma-70 region 2 AMED_3338 PF08281 Sigma-70, region 4 AMED_3339 PF01047 MarR family AMED_3340 PF00925 GTP cyclohydrolase II AMED_3343 PF04616 Glycosyl hydrolases family 43 AMED_3343 PF13385 Concanavalin A-like lectin/glucanases superfamily AMED_3345 PF00440 Bacterial regulatory proteins, tetR family AMED_3345 PF16859 AMED_3345 AMED_3347 PF00561 alpha/beta hydrolase fold AMED_3349 PF07859 alpha/beta hydrolase fold AMED_3350 PF00296 Luciferase-like monooxygenase AMED_3353 PF04607 Region found in RelA / SpoT proteins AMED_3354 PF00440 Bacterial regulatory proteins, tetR family AMED_3354 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_3355 PF00067 Cytochrome P450 AMED_3356 PF06197 AMED_3356 AMED_3357 PF00246 Zinc carboxypeptidase AMED_3358 PF01810 AMED_3358 AMED_3359 PF00226 DnaJ domain AMED_3360 PF00501 AMP-binding enzyme AMED_3360 PF13193 AMP-binding enzyme C-terminal domain AMED_3361 PF04978 Protein of unknown function (DUF664) AMED_3362 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_3363 PF01263 Aldose 1-epimerase AMED_3364 PF13556 PucR C-terminal helix-turn-helix domain AMED_3365 PF03176 MMPL family AMED_3366 PF07690 Major Facilitator Superfamily AMED_3367 PF00501 AMP-binding enzyme AMED_3368 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3368 PF00550 Phosphopantetheine attachment site AMED_3368 PF00698 Acyl transferase domain AMED_3368 PF00975 Thioesterase domain AMED_3368 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3368 PF08659 KR domain AMED_3368 PF14765 Polyketide synthase dehydratase AMED_3368 PF16197 AMED_3368 AMED_3369 PF01039 Carboxyl transferase domain AMED_3370 PF00756 Putative esterase AMED_3371 PF03583 Secretory lipase AMED_3372 PF01083 Cutinase AMED_3373 PF00440 Bacterial regulatory proteins, tetR family AMED_3374 PF13556 PucR C-terminal helix-turn-helix domain AMED_3375 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3376 PF00106 short chain dehydrogenase AMED_3377 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3378 PF01144 Coenzyme A transferase AMED_3380 PF03060 Nitronate monooxygenase AMED_3381 PF00296 Luciferase-like monooxygenase AMED_3382 PF00108 Thiolase, N-terminal domain AMED_3382 PF02803 Thiolase, C-terminal domain AMED_3383 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3384 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3384 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3384 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3385 PF00501 AMP-binding enzyme AMED_3385 PF13193 AMP-binding enzyme C-terminal domain AMED_3386 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3387 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3387 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3387 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3388 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3388 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3389 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3389 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3390 PF04542 Sigma-70 region 2 AMED_3390 PF13490 Putative zinc-finger AMED_3391 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_3392 PF00392 Bacterial regulatory proteins, gntR family AMED_3392 PF07729 FCD domain AMED_3393 PF01223 DNA/RNA non-specific endonuclease AMED_3393 PF13365 Trypsin-like peptidase domain AMED_3394 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_3394 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_3395 PF00440 Bacterial regulatory proteins, tetR family AMED_3396 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3397 PF12697 Alpha/beta hydrolase family AMED_3398 PF00211 Adenylate and Guanylate cyclase catalytic domain AMED_3398 PF00672 HAMP domain AMED_3399 PF11583 P-aminobenzoate N-oxygenase AurF AMED_3400 PF00037 4Fe-4S binding domain AMED_3400 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_3401 PF00440 Bacterial regulatory proteins, tetR family AMED_3402 PF04072 Leucine carboxyl methyltransferase AMED_3404 PF01402 Ribbon-helix-helix protein, copG family AMED_3405 PF00652 Ricin-type beta-trefoil lectin domain AMED_3405 PF16499 AMED_3405 AMED_3406 PF00356 Bacterial regulatory proteins, lacI family AMED_3406 PF13377 Periplasmic binding protein-like domain AMED_3407 PF13416 Bacterial extracellular solute-binding protein AMED_3408 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3409 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3410 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) AMED_3411 PF00652 Ricin-type beta-trefoil lectin domain AMED_3412 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3413 PF03422 Carbohydrate binding module (family 6) AMED_3413 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) AMED_3414 PF02031 Streptomyces extracellular neutral proteinase (M7) family AMED_3415 PF00440 Bacterial regulatory proteins, tetR family AMED_3416 PF07690 Major Facilitator Superfamily AMED_3418 PF00480 ROK family AMED_3418 PF12802 MarR family AMED_3419 PF13520 Amino acid permease AMED_3420 PF00703 Glycosyl hydrolases family 2 AMED_3421 PF00480 ROK family AMED_3422 PF05977 Transmembrane secretion effector AMED_3423 PF00356 Bacterial regulatory proteins, lacI family AMED_3423 PF13377 Periplasmic binding protein-like domain AMED_3424 PF12222 AMED_3424 AMED_3425 PF13649 Methyltransferase domain AMED_3426 PF00067 Cytochrome P450 AMED_3427 PF06626 AMED_3427 AMED_3428 PF13532 2OG-Fe(II) oxygenase superfamily AMED_3429 PF01872 RibD C-terminal domain AMED_3431 PF06736 AMED_3431 AMED_3432 PF00849 RNA pseudouridylate synthase AMED_3434 PF01047 MarR family AMED_3435 PF00296 Luciferase-like monooxygenase AMED_3437 PF04226 AMED_3437 AMED_3438 PF00753 Metallo-beta-lactamase superfamily AMED_3439 PF13560 Helix-turn-helix domain AMED_3441 PF03551 Transcriptional regulator PadR-like family AMED_3441 PF10400 Virulence activator alpha C-term AMED_3442 PF12680 SnoaL-like domain AMED_3443 PF00775 Dioxygenase AMED_3444 PF13460 NADH(P)-binding AMED_3445 PF00501 AMP-binding enzyme AMED_3445 PF13193 AMP-binding enzyme C-terminal domain AMED_3446 PF01975 Survival protein SurE AMED_3448 PF04542 Sigma-70 region 2 AMED_3448 PF08281 Sigma-70, region 4 AMED_3449 PF07995 Glucose / Sorbosone dehydrogenase AMED_3450 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3451 PF13460 NADH(P)-binding AMED_3455 PF00440 Bacterial regulatory proteins, tetR family AMED_3456 PF07969 Amidohydrolase family AMED_3457 PF01546 Peptidase family M20/M25/M40 AMED_3457 PF07687 Peptidase dimerisation domain AMED_3459 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_3459 PF13378 Enolase C-terminal domain-like AMED_3460 PF00144 Beta-lactamase AMED_3461 PF13354 Beta-lactamase enzyme family AMED_3462 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_3463 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3464 PF00005 ABC transporter AMED_3464 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3464 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_3465 PF00005 ABC transporter AMED_3465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_3466 PF00144 Beta-lactamase AMED_3466 PF00326 Prolyl oligopeptidase family AMED_3466 PF07676 WD40-like Beta Propeller Repeat AMED_3467 PF07690 Major Facilitator Superfamily AMED_3468 PF00440 Bacterial regulatory proteins, tetR family AMED_3469 PF08241 Methyltransferase domain AMED_3470 PF14117 AMED_3470 AMED_3471 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3472 PF07690 Major Facilitator Superfamily AMED_3473 PF00067 Cytochrome P450 AMED_3474 PF00717 Peptidase S24-like AMED_3474 PF01726 LexA DNA binding domain AMED_3475 PF03067 Chitin binding domain AMED_3476 PF13560 Helix-turn-helix domain AMED_3477 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3477 PF13602 Zinc-binding dehydrogenase AMED_3478 PF03422 Carbohydrate binding module (family 6) AMED_3478 PF16483 AMED_3478 AMED_3480 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_3481 PF01593 Flavin containing amine oxidoreductase AMED_3482 PF00294 pfkB family carbohydrate kinase AMED_3483 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_3484 PF00893 Small Multidrug Resistance protein AMED_3485 PF00893 Small Multidrug Resistance protein AMED_3486 PF00106 short chain dehydrogenase AMED_3487 PF03773 AMED_3487 AMED_3489 PF13379 NMT1-like family AMED_3490 PF00196 Bacterial regulatory proteins, luxR family AMED_3490 PF13191 AAA ATPase domain AMED_3492 PF00106 short chain dehydrogenase AMED_3493 PF00440 Bacterial regulatory proteins, tetR family AMED_3494 PF00501 AMP-binding enzyme AMED_3494 PF13193 AMP-binding enzyme C-terminal domain AMED_3495 PF00296 Luciferase-like monooxygenase AMED_3496 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3497 PF00550 Phosphopantetheine attachment site AMED_3498 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3498 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3499 PF00561 alpha/beta hydrolase fold AMED_3500 PF00392 Bacterial regulatory proteins, gntR family AMED_3500 PF07729 FCD domain AMED_3501 PF01161 Phosphatidylethanolamine-binding protein AMED_3501 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_3503 PF12721 AMED_3503 AMED_3504 PF00107 Zinc-binding dehydrogenase AMED_3504 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3505 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_3505 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_3506 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_3507 PF00196 Bacterial regulatory proteins, luxR family AMED_3507 PF13191 AAA ATPase domain AMED_3508 PF00403 Heavy-metal-associated domain AMED_3510 PF00122 E1-E2 ATPase AMED_3510 PF00403 Heavy-metal-associated domain AMED_3510 PF00702 haloacid dehalogenase-like hydrolase AMED_3511 PF01435 Peptidase family M48 AMED_3512 PF03965 Penicillinase repressor AMED_3513 PF03713 Domain of unknown function (DUF305) AMED_3517 PF03358 NADPH-dependent FMN reductase AMED_3518 PF00999 Sodium/hydrogen exchanger family AMED_3519 PF04542 Sigma-70 region 2 AMED_3519 PF08281 Sigma-70, region 4 AMED_3520 PF13490 Putative zinc-finger AMED_3521 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_3523 PF13602 Zinc-binding dehydrogenase AMED_3524 PF01370 NAD dependent epimerase/dehydratase family AMED_3524 PF08338 Domain of unknown function (DUF1731) AMED_3525 PF00176 SNF2 family N-terminal domain AMED_3525 PF00271 Helicase conserved C-terminal domain AMED_3525 PF12419 AMED_3525 AMED_3527 PF05729 NACHT domain AMED_3528 PF00580 UvrD/REP helicase N-terminal domain AMED_3528 PF13361 UvrD-like helicase C-terminal domain AMED_3529 PF12951 AMED_3529 AMED_3530 PF05270 Alpha-L-arabinofuranosidase B (ABFB) AMED_3530 PF09206 Alpha-L-arabinofuranosidase B, catalytic AMED_3531 PF05270 Alpha-L-arabinofuranosidase B (ABFB) AMED_3531 PF09206 Alpha-L-arabinofuranosidase B, catalytic AMED_3532 PF05977 Transmembrane secretion effector AMED_3533 PF01494 FAD binding domain AMED_3535 PF01594 AMED_3535 AMED_3538 PF13515 AMED_3538 AMED_3539 PF01645 Conserved region in glutamate synthase AMED_3540 PF00072 Response regulator receiver domain AMED_3540 PF00486 Transcriptional regulatory protein, C terminal AMED_3541 PF00512 His Kinase A (phospho-acceptor) domain AMED_3541 PF00672 HAMP domain AMED_3541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3543 PF01471 Putative peptidoglycan binding domain AMED_3544 PF00005 ABC transporter AMED_3545 PF02687 AMED_3545 AMED_3545 PF12704 MacB-like periplasmic core domain AMED_3546 PF00107 Zinc-binding dehydrogenase AMED_3547 PF07336 Protein of unknown function (DUF1470) AMED_3547 PF11706 CGNR zinc finger AMED_3548 PF07690 Major Facilitator Superfamily AMED_3549 PF00561 alpha/beta hydrolase fold AMED_3550 PF00440 Bacterial regulatory proteins, tetR family AMED_3551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3551 PF07730 Histidine kinase AMED_3552 PF00072 Response regulator receiver domain AMED_3552 PF00196 Bacterial regulatory proteins, luxR family AMED_3553 PF00144 Beta-lactamase AMED_3554 PF02515 CoA-transferase family III AMED_3555 PF07287 AMED_3555 AMED_3556 PF00440 Bacterial regulatory proteins, tetR family AMED_3557 PF00072 Response regulator receiver domain AMED_3557 PF07730 Histidine kinase AMED_3559 PF13560 Helix-turn-helix domain AMED_3560 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3561 PF00545 ribonuclease AMED_3562 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_3563 PF12833 Helix-turn-helix domain AMED_3564 PF00440 Bacterial regulatory proteins, tetR family AMED_3564 PF16925 AMED_3564 AMED_3565 PF00106 short chain dehydrogenase AMED_3566 PF00106 short chain dehydrogenase AMED_3567 PF13560 Helix-turn-helix domain AMED_3571 PF12770 AMED_3571 AMED_3573 PF12770 AMED_3573 AMED_3573 PF13289 AMED_3573 AMED_3575 PF13460 NADH(P)-binding AMED_3576 PF13539 D-alanyl-D-alanine carboxypeptidase AMED_3577 PF00067 Cytochrome P450 AMED_3578 PF12802 MarR family AMED_3579 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) AMED_3579 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3581 PF00072 Response regulator receiver domain AMED_3581 PF00486 Transcriptional regulatory protein, C terminal AMED_3582 PF00512 His Kinase A (phospho-acceptor) domain AMED_3582 PF00672 HAMP domain AMED_3582 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3583 PF07394 AMED_3583 AMED_3584 PF08811 AMED_3584 AMED_3585 PF10282 Lactonase, 7-bladed beta-propeller AMED_3586 PF01522 Polysaccharide deacetylase AMED_3590 PF08448 PAS fold AMED_3591 PF00989 PAS fold AMED_3591 PF01739 CheR methyltransferase, SAM binding domain AMED_3591 PF03705 CheR methyltransferase, all-alpha domain AMED_3592 PF01339 CheB methylesterase AMED_3593 PF01494 FAD binding domain AMED_3594 PF00440 Bacterial regulatory proteins, tetR family AMED_3595 PF13424 Tetratricopeptide repeat AMED_3597 PF13602 Zinc-binding dehydrogenase AMED_3598 PF00440 Bacterial regulatory proteins, tetR family AMED_3598 PF16859 AMED_3598 AMED_3599 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMED_3599 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMED_3600 PF00484 Carbonic anhydrase AMED_3602 PF00440 Bacterial regulatory proteins, tetR family AMED_3602 PF13305 WHG domain AMED_3603 PF00440 Bacterial regulatory proteins, tetR family AMED_3604 PF07859 alpha/beta hydrolase fold AMED_3605 PF07883 Cupin domain AMED_3606 PF13474 SnoaL-like domain AMED_3608 PF01740 STAS domain AMED_3609 PF00440 Bacterial regulatory proteins, tetR family AMED_3610 PF00106 short chain dehydrogenase AMED_3611 PF00400 WD domain, G-beta repeat AMED_3614 PF13411 MerR HTH family regulatory protein AMED_3616 PF04542 Sigma-70 region 2 AMED_3616 PF08281 Sigma-70, region 4 AMED_3616 PF12680 SnoaL-like domain AMED_3618 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3619 PF01183 Glycosyl hydrolases family 25 AMED_3619 PF01471 Putative peptidoglycan binding domain AMED_3620 PF01471 Putative peptidoglycan binding domain AMED_3620 PF08291 Peptidase M15 AMED_3621 PF01471 Putative peptidoglycan binding domain AMED_3621 PF13560 Helix-turn-helix domain AMED_3622 PF00486 Transcriptional regulatory protein, C terminal AMED_3622 PF00931 NB-ARC domain AMED_3622 PF03704 Bacterial transcriptional activator domain AMED_3622 PF13424 Tetratricopeptide repeat AMED_3623 PF00196 Bacterial regulatory proteins, luxR family AMED_3623 PF13191 AAA ATPase domain AMED_3624 PF01648 4'-phosphopantetheinyl transferase superfamily AMED_3625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3625 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3626 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3628 PF00550 Phosphopantetheine attachment site AMED_3629 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_3629 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_3630 PF02655 ATP-grasp domain AMED_3631 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_3632 PF00668 Condensation domain AMED_3633 PF00005 ABC transporter AMED_3634 PF01061 AMED_3634 AMED_3635 PF02543 Carbamoyltransferase AMED_3635 PF16861 AMED_3635 AMED_3639 PF02274 Amidinotransferase AMED_3640 PF04199 Putative cyclase AMED_3641 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_3641 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_3642 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_3642 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_3643 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_3643 PF01799 [2Fe-2S] binding domain AMED_3644 PF00440 Bacterial regulatory proteins, tetR family AMED_3645 PF08305 NPCBM/NEW2 domain AMED_3645 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AMED_3645 PF16499 AMED_3645 AMED_3650 PF04075 Domain of unknown function (DUF385) AMED_3652 PF00440 Bacterial regulatory proteins, tetR family AMED_3655 PF12730 AMED_3655 AMED_3656 PF00144 Beta-lactamase AMED_3657 PF13474 SnoaL-like domain AMED_3658 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3659 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_3660 PF04542 Sigma-70 region 2 AMED_3660 PF08281 Sigma-70, region 4 AMED_3662 PF17132 AMED_3662 AMED_3663 PF05592 Bacterial alpha-L-rhamnosidase AMED_3663 PF08531 Alpha-L-rhamnosidase N-terminal domain AMED_3664 PF00440 Bacterial regulatory proteins, tetR family AMED_3665 PF00440 Bacterial regulatory proteins, tetR family AMED_3665 PF13305 WHG domain AMED_3666 PF00107 Zinc-binding dehydrogenase AMED_3666 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3667 PF06197 AMED_3667 AMED_3668 PF12680 SnoaL-like domain AMED_3669 PF00561 alpha/beta hydrolase fold AMED_3672 PF00561 alpha/beta hydrolase fold AMED_3673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_3673 PF03466 LysR substrate binding domain AMED_3676 PF07745 Glycosyl hydrolase family 53 AMED_3677 PF15979 AMED_3677 AMED_3678 PF04616 Glycosyl hydrolases family 43 AMED_3679 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_3680 PF00652 Ricin-type beta-trefoil lectin domain AMED_3680 PF01738 Dienelactone hydrolase family AMED_3681 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3681 PF00501 AMP-binding enzyme AMED_3681 PF00550 Phosphopantetheine attachment site AMED_3681 PF00668 Condensation domain AMED_3681 PF00698 Acyl transferase domain AMED_3681 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3681 PF07690 Major Facilitator Superfamily AMED_3681 PF12697 Alpha/beta hydrolase family AMED_3681 PF13193 AMP-binding enzyme C-terminal domain AMED_3681 PF13745 HxxPF-repeated domain AMED_3681 PF16197 AMED_3681 AMED_3682 PF00501 AMP-binding enzyme AMED_3682 PF13193 AMP-binding enzyme C-terminal domain AMED_3683 PF00550 Phosphopantetheine attachment site AMED_3684 PF00550 Phosphopantetheine attachment site AMED_3684 PF00668 Condensation domain AMED_3684 PF13745 HxxPF-repeated domain AMED_3685 PF00501 AMP-binding enzyme AMED_3685 PF00550 Phosphopantetheine attachment site AMED_3687 PF02424 ApbE family AMED_3688 PF04205 FMN-binding domain AMED_3689 PF00175 Oxidoreductase NAD-binding domain AMED_3689 PF01794 AMED_3689 AMED_3690 PF00512 His Kinase A (phospho-acceptor) domain AMED_3690 PF00672 HAMP domain AMED_3690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3691 PF00072 Response regulator receiver domain AMED_3691 PF00486 Transcriptional regulatory protein, C terminal AMED_3693 PF00072 Response regulator receiver domain AMED_3693 PF00196 Bacterial regulatory proteins, luxR family AMED_3694 PF07730 Histidine kinase AMED_3697 PF01494 FAD binding domain AMED_3698 PF13649 Methyltransferase domain AMED_3700 PF00872 AMED_3700 AMED_3704 PF00440 Bacterial regulatory proteins, tetR family AMED_3704 PF14246 AefR-like transcriptional repressor, C-terminal region AMED_3705 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3706 PF01037 AsnC family AMED_3706 PF13412 Winged helix-turn-helix DNA-binding AMED_3707 PF00892 EamA-like transporter family AMED_3708 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3708 PF13602 Zinc-binding dehydrogenase AMED_3709 PF07859 alpha/beta hydrolase fold AMED_3710 PF05368 NmrA-like family AMED_3711 PF12802 MarR family AMED_3712 PF00703 Glycosyl hydrolases family 2 AMED_3712 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_3712 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_3712 PF02929 Beta galactosidase small chain AMED_3713 PF00652 Ricin-type beta-trefoil lectin domain AMED_3713 PF07995 Glucose / Sorbosone dehydrogenase AMED_3715 PF07883 Cupin domain AMED_3716 PF02627 Carboxymuconolactone decarboxylase family AMED_3717 PF07690 Major Facilitator Superfamily AMED_3718 PF13560 Helix-turn-helix domain AMED_3719 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_3719 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_3720 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_3721 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_3722 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_3722 PF01799 [2Fe-2S] binding domain AMED_3723 PF07690 Major Facilitator Superfamily AMED_3724 PF00107 Zinc-binding dehydrogenase AMED_3724 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3725 PF13560 Helix-turn-helix domain AMED_3727 PF04126 Cyclophilin-like AMED_3728 PF13672 Protein phosphatase 2C AMED_3731 PF01872 RibD C-terminal domain AMED_3734 PF01183 Glycosyl hydrolases family 25 AMED_3736 PF00571 CBS domain AMED_3737 PF03600 Citrate transporter AMED_3737 PF13305 WHG domain AMED_3738 PF10503 Esterase PHB depolymerase AMED_3739 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) AMED_3740 PF00480 ROK family AMED_3741 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_3742 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3743 PF00005 ABC transporter AMED_3743 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3744 PF00005 ABC transporter AMED_3744 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_3745 PF00703 Glycosyl hydrolases family 2 AMED_3746 PF13377 Periplasmic binding protein-like domain AMED_3747 PF00652 Ricin-type beta-trefoil lectin domain AMED_3747 PF02156 Glycosyl hydrolase family 26 AMED_3748 PF00652 Ricin-type beta-trefoil lectin domain AMED_3748 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_3749 PF00480 ROK family AMED_3750 PF02065 Melibiase AMED_3750 PF16874 AMED_3750 AMED_3750 PF16875 AMED_3750 AMED_3751 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_3752 PF12833 Helix-turn-helix domain AMED_3752 PF12852 Cupin AMED_3753 PF00440 Bacterial regulatory proteins, tetR family AMED_3754 PF01494 FAD binding domain AMED_3757 PF13376 AMED_3757 AMED_3759 PF01569 PAP2 superfamily AMED_3760 PF04542 Sigma-70 region 2 AMED_3760 PF08281 Sigma-70, region 4 AMED_3761 PF00355 Rieske [2Fe-2S] domain AMED_3762 PF00314 Thaumatin family AMED_3763 PF11790 AMED_3763 AMED_3764 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AMED_3766 PF00072 Response regulator receiver domain AMED_3766 PF00486 Transcriptional regulatory protein, C terminal AMED_3767 PF00512 His Kinase A (phospho-acceptor) domain AMED_3767 PF00672 HAMP domain AMED_3767 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_3769 PF01757 AMED_3769 AMED_3770 PF04672 S-adenosyl methyltransferase AMED_3774 PF00196 Bacterial regulatory proteins, luxR family AMED_3774 PF12146 Putative lysophospholipase AMED_3775 PF08241 Methyltransferase domain AMED_3777 PF12840 Helix-turn-helix domain AMED_3779 PF14417 AMED_3779 AMED_3780 PF01381 Helix-turn-helix AMED_3781 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMED_3781 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMED_3782 PF01106 NifU-like domain AMED_3784 PF00708 Acylphosphatase AMED_3784 PF01300 Telomere recombination AMED_3784 PF07503 HypF finger AMED_3785 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMED_3786 PF01155 Hydrogenase expression/synthesis hypA family AMED_3787 PF00586 AIR synthase related protein, N-terminal domain AMED_3787 PF02769 AIR synthase related protein, C-terminal domain AMED_3788 PF01924 Hydrogenase formation hypA family AMED_3789 PF01455 HupF/HypC family AMED_3790 PF01750 Hydrogenase maturation protease AMED_3794 PF01106 NifU-like domain AMED_3795 PF00374 Nickel-dependent hydrogenase AMED_3796 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMED_3796 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMED_3797 PF13580 SIS domain AMED_3798 PF01455 HupF/HypC family AMED_3799 PF13580 SIS domain AMED_3800 PF13385 Concanavalin A-like lectin/glucanases superfamily AMED_3801 PF05593 AMED_3801 AMED_3802 PF00106 short chain dehydrogenase AMED_3803 PF13340 AMED_3803 AMED_3804 PF13586 AMED_3804 AMED_3806 PF00486 Transcriptional regulatory protein, C terminal AMED_3806 PF03704 Bacterial transcriptional activator domain AMED_3807 PF00561 alpha/beta hydrolase fold AMED_3808 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3809 PF01638 HxlR-like helix-turn-helix AMED_3810 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3810 PF13602 Zinc-binding dehydrogenase AMED_3813 PF00440 Bacterial regulatory proteins, tetR family AMED_3814 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3814 PF13602 Zinc-binding dehydrogenase AMED_3815 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3816 PF00296 Luciferase-like monooxygenase AMED_3817 PF00106 short chain dehydrogenase AMED_3818 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3819 PF13577 SnoaL-like domain AMED_3820 PF00440 Bacterial regulatory proteins, tetR family AMED_3823 PF13458 Periplasmic binding protein AMED_3824 PF00005 ABC transporter AMED_3824 PF02653 AMED_3824 AMED_3824 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMED_3825 PF00005 ABC transporter AMED_3826 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3827 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3827 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3827 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3828 PF00501 AMP-binding enzyme AMED_3828 PF13193 AMP-binding enzyme C-terminal domain AMED_3829 PF13622 Thioesterase-like superfamily AMED_3830 PF13452 N-terminal half of MaoC dehydratase AMED_3831 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3832 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3832 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3833 PF00171 Aldehyde dehydrogenase family AMED_3834 PF01844 HNH endonuclease AMED_3834 PF02720 AMED_3834 AMED_3835 PF02515 CoA-transferase family III AMED_3836 PF00108 Thiolase, N-terminal domain AMED_3836 PF02803 Thiolase, C-terminal domain AMED_3837 PF03060 Nitronate monooxygenase AMED_3838 PF00753 Metallo-beta-lactamase superfamily AMED_3839 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_3839 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_3840 PF00171 Aldehyde dehydrogenase family AMED_3841 PF13380 CoA binding domain AMED_3841 PF13549 ATP-grasp domain AMED_3841 PF13607 Succinyl-CoA ligase like flavodoxin domain AMED_3842 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3842 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3842 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3843 PF03972 MmgE/PrpD family AMED_3844 PF13622 Thioesterase-like superfamily AMED_3846 PF04909 Amidohydrolase AMED_3847 PF00440 Bacterial regulatory proteins, tetR family AMED_3848 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3848 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3848 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3849 PF04909 Amidohydrolase AMED_3850 PF00440 Bacterial regulatory proteins, tetR family AMED_3851 PF01796 AMED_3851 AMED_3852 PF00108 Thiolase, N-terminal domain AMED_3852 PF02803 Thiolase, C-terminal domain AMED_3853 PF00106 short chain dehydrogenase AMED_3854 PF07681 AMED_3854 AMED_3855 PF00108 Thiolase, N-terminal domain AMED_3855 PF02803 Thiolase, C-terminal domain AMED_3856 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3857 PF03061 Thioesterase superfamily AMED_3858 PF00232 Glycosyl hydrolase family 1 AMED_3859 PF00106 short chain dehydrogenase AMED_3860 PF00144 Beta-lactamase AMED_3861 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3862 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3863 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3864 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3864 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3864 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3865 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3866 PF00501 AMP-binding enzyme AMED_3866 PF13193 AMP-binding enzyme C-terminal domain AMED_3868 PF01796 AMED_3868 AMED_3868 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) AMED_3869 PF01575 MaoC like domain AMED_3870 PF00392 Bacterial regulatory proteins, gntR family AMED_3870 PF07729 FCD domain AMED_3871 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3871 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3871 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3872 PF12833 Helix-turn-helix domain AMED_3874 PF05893 Acyl-CoA reductase (LuxC) AMED_3875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3875 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3876 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_3876 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_3876 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_3877 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3878 PF00392 Bacterial regulatory proteins, gntR family AMED_3878 PF07729 FCD domain AMED_3879 PF00106 short chain dehydrogenase AMED_3880 PF00809 Pterin binding enzyme AMED_3881 PF00501 AMP-binding enzyme AMED_3881 PF13193 AMP-binding enzyme C-terminal domain AMED_3882 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_3883 PF00440 Bacterial regulatory proteins, tetR family AMED_3884 PF00561 alpha/beta hydrolase fold AMED_3886 PF00440 Bacterial regulatory proteins, tetR family AMED_3886 PF13977 Bacterial transcriptional repressor AMED_3887 PF00890 FAD binding domain AMED_3888 PF02585 GlcNAc-PI de-N-acetylase AMED_3889 PF00931 NB-ARC domain AMED_3889 PF13424 Tetratricopeptide repeat AMED_3892 PF07398 AMED_3892 AMED_3892 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_3893 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_3893 PF00175 Oxidoreductase NAD-binding domain AMED_3893 PF00970 Oxidoreductase FAD-binding domain AMED_3893 PF03473 MOSC domain AMED_3893 PF03475 3-alpha domain AMED_3894 PF00480 ROK family AMED_3894 PF13412 Winged helix-turn-helix DNA-binding AMED_3895 PF07350 Protein of unknown function (DUF1479) AMED_3897 PF01546 Peptidase family M20/M25/M40 AMED_3899 PF13520 Amino acid permease AMED_3900 PF00723 Glycosyl hydrolases family 15 AMED_3901 PF07690 Major Facilitator Superfamily AMED_3902 PF13396 AMED_3902 AMED_3903 PF00196 Bacterial regulatory proteins, luxR family AMED_3906 PF10009 AMED_3906 AMED_3907 PF06897 AMED_3907 AMED_3909 PF00196 Bacterial regulatory proteins, luxR family AMED_3909 PF02399 AMED_3909 AMED_3910 PF01594 AMED_3910 AMED_3911 PF08450 SMP-30/Gluconolaconase/LRE-like region AMED_3912 PF00041 Fibronectin type III domain AMED_3912 PF07995 Glucose / Sorbosone dehydrogenase AMED_3913 PF02056 Family 4 glycosyl hydrolase AMED_3913 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMED_3914 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3915 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3916 PF01547 Bacterial extracellular solute-binding protein AMED_3917 PF03537 Glycoside-hydrolase family GH114 AMED_3918 PF00455 AMED_3918 AMED_3918 PF08220 DeoR-like helix-turn-helix domain AMED_3919 PF01380 SIS domain AMED_3920 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMED_3921 PF00892 EamA-like transporter family AMED_3922 PF00294 pfkB family carbohydrate kinase AMED_3923 PF01116 Fructose-bisphosphate aldolase class-II AMED_3924 PF00652 Ricin-type beta-trefoil lectin domain AMED_3924 PF01738 Dienelactone hydrolase family AMED_3926 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3926 PF00501 AMP-binding enzyme AMED_3926 PF00550 Phosphopantetheine attachment site AMED_3926 PF00698 Acyl transferase domain AMED_3926 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3926 PF08659 KR domain AMED_3926 PF13193 AMP-binding enzyme C-terminal domain AMED_3926 PF14765 Polyketide synthase dehydratase AMED_3926 PF16197 AMED_3926 AMED_3927 PF00067 Cytochrome P450 AMED_3928 PF10517 AMED_3928 AMED_3929 PF00107 Zinc-binding dehydrogenase AMED_3929 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3930 PF04542 Sigma-70 region 2 AMED_3930 PF08281 Sigma-70, region 4 AMED_3931 PF00041 Fibronectin type III domain AMED_3931 PF00759 Glycosyl hydrolase family 9 AMED_3931 PF00942 Cellulose binding domain AMED_3932 PF01229 Glycosyl hydrolases family 39 AMED_3932 PF05345 Putative Ig domain AMED_3932 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3933 PF04616 Glycosyl hydrolases family 43 AMED_3933 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3935 PF06441 Epoxide hydrolase N terminus AMED_3936 PF07336 Protein of unknown function (DUF1470) AMED_3936 PF11706 CGNR zinc finger AMED_3937 PF00378 Enoyl-CoA hydratase/isomerase family AMED_3937 PF02911 Formyl transferase, C-terminal domain AMED_3938 PF00486 Transcriptional regulatory protein, C terminal AMED_3938 PF00931 NB-ARC domain AMED_3938 PF03704 Bacterial transcriptional activator domain AMED_3939 PF00717 Peptidase S24-like AMED_3940 PF00005 ABC transporter AMED_3942 PF07291 AMED_3942 AMED_3945 PF13411 MerR HTH family regulatory protein AMED_3946 PF00501 AMP-binding enzyme AMED_3946 PF13193 AMP-binding enzyme C-terminal domain AMED_3948 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_3949 PF00440 Bacterial regulatory proteins, tetR family AMED_3950 PF00106 short chain dehydrogenase AMED_3951 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_3951 PF13378 Enolase C-terminal domain-like AMED_3952 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3953 PF00528 Binding-protein-dependent transport system inner membrane component AMED_3954 PF13416 Bacterial extracellular solute-binding protein AMED_3955 PF00392 Bacterial regulatory proteins, gntR family AMED_3955 PF07729 FCD domain AMED_3956 PF05336 Domain of unknown function (DUF718) AMED_3957 PF03033 Glycosyltransferase family 28 N-terminal domain AMED_3958 PF00144 Beta-lactamase AMED_3960 PF00067 Cytochrome P450 AMED_3961 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMED_3962 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_3962 PF00501 AMP-binding enzyme AMED_3962 PF00550 Phosphopantetheine attachment site AMED_3962 PF00668 Condensation domain AMED_3962 PF00975 Thioesterase domain AMED_3962 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_3962 PF08659 KR domain AMED_3962 PF13193 AMP-binding enzyme C-terminal domain AMED_3962 PF13745 HxxPF-repeated domain AMED_3962 PF16197 AMED_3962 AMED_3963 PF00501 AMP-binding enzyme AMED_3963 PF00550 Phosphopantetheine attachment site AMED_3963 PF00668 Condensation domain AMED_3963 PF00975 Thioesterase domain AMED_3963 PF13193 AMP-binding enzyme C-terminal domain AMED_3963 PF13745 HxxPF-repeated domain AMED_3964 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_3965 PF00440 Bacterial regulatory proteins, tetR family AMED_3966 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AMED_3968 PF04542 Sigma-70 region 2 AMED_3969 PF00561 alpha/beta hydrolase fold AMED_3970 PF12802 MarR family AMED_3971 PF01494 FAD binding domain AMED_3973 PF00480 ROK family AMED_3974 PF00480 ROK family AMED_3975 PF00005 ABC transporter AMED_3976 PF02653 AMED_3976 AMED_3977 PF13407 Periplasmic binding protein domain AMED_3978 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_3978 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_3979 PF01261 Xylose isomerase-like TIM barrel AMED_3979 PF07582 AP endonuclease family 2 C terminus AMED_3980 PF00107 Zinc-binding dehydrogenase AMED_3980 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3981 PF00440 Bacterial regulatory proteins, tetR family AMED_3982 PF12697 Alpha/beta hydrolase family AMED_3983 PF00440 Bacterial regulatory proteins, tetR family AMED_3984 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3984 PF14498 Glycosyl hydrolase family 65, N-terminal domain AMED_3985 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3986 PF01872 RibD C-terminal domain AMED_3987 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) AMED_3987 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_3988 PF14014 AMED_3988 AMED_3990 PF00440 Bacterial regulatory proteins, tetR family AMED_3992 PF00553 Cellulose binding domain AMED_3992 PF01341 Glycosyl hydrolases family 6 AMED_3993 PF00652 Ricin-type beta-trefoil lectin domain AMED_3993 PF02057 Glycosyl hydrolase family 59 AMED_3994 PF00652 Ricin-type beta-trefoil lectin domain AMED_3994 PF09206 Alpha-L-arabinofuranosidase B, catalytic AMED_3995 PF00331 Glycosyl hydrolase family 10 AMED_3995 PF00652 Ricin-type beta-trefoil lectin domain AMED_3995 PF03664 Glycosyl hydrolase family 62 AMED_3996 PF00107 Zinc-binding dehydrogenase AMED_3996 PF08240 Alcohol dehydrogenase GroES-like domain AMED_3997 PF00440 Bacterial regulatory proteins, tetR family AMED_3998 PF00501 AMP-binding enzyme AMED_3998 PF13193 AMP-binding enzyme C-terminal domain AMED_3999 PF13185 GAF domain AMED_3999 PF13556 PucR C-terminal helix-turn-helix domain AMED_4000 PF00083 Sugar (and other) transporter AMED_4001 PF07519 Tannase and feruloyl esterase AMED_4002 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_4002 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_4002 PF02368 Bacterial Ig-like domain (group 2) AMED_4002 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AMED_4002 PF14310 Fibronectin type III-like domain AMED_4004 PF13231 AMED_4004 AMED_4005 PF00331 Glycosyl hydrolase family 10 AMED_4006 PF13556 PucR C-terminal helix-turn-helix domain AMED_4007 PF00550 Phosphopantetheine attachment site AMED_4008 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4008 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4009 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_4009 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMED_4010 PF00535 Glycosyl transferase family 2 AMED_4011 PF00067 Cytochrome P450 AMED_4012 PF00501 AMP-binding enzyme AMED_4012 PF13193 AMP-binding enzyme C-terminal domain AMED_4013 PF01370 NAD dependent epimerase/dehydratase family AMED_4014 PF00486 Transcriptional regulatory protein, C terminal AMED_4014 PF03704 Bacterial transcriptional activator domain AMED_4014 PF05729 NACHT domain AMED_4015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4015 PF03466 LysR substrate binding domain AMED_4016 PF12697 Alpha/beta hydrolase family AMED_4017 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_4019 PF00106 short chain dehydrogenase AMED_4020 PF01047 MarR family AMED_4021 PF00931 NB-ARC domain AMED_4021 PF03704 Bacterial transcriptional activator domain AMED_4021 PF12862 AMED_4021 AMED_4021 PF13176 Tetratricopeptide repeat AMED_4021 PF13374 Tetratricopeptide repeat AMED_4021 PF13424 Tetratricopeptide repeat AMED_4021 PF13560 Helix-turn-helix domain AMED_4022 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMED_4023 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_4023 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_4025 PF00072 Response regulator receiver domain AMED_4025 PF00196 Bacterial regulatory proteins, luxR family AMED_4026 PF07730 Histidine kinase AMED_4026 PF13796 AMED_4026 AMED_4027 PF00005 ABC transporter AMED_4028 PF02687 AMED_4028 AMED_4029 PF01593 Flavin containing amine oxidoreductase AMED_4030 PF00550 Phosphopantetheine attachment site AMED_4032 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_4032 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_4032 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_4033 PF00291 Pyridoxal-phosphate dependent enzyme AMED_4034 PF00501 AMP-binding enzyme AMED_4034 PF00550 Phosphopantetheine attachment site AMED_4034 PF00668 Condensation domain AMED_4034 PF00975 Thioesterase domain AMED_4034 PF13193 AMP-binding enzyme C-terminal domain AMED_4034 PF13745 HxxPF-repeated domain AMED_4035 PF01061 AMED_4035 AMED_4036 PF03621 MbtH-like protein AMED_4037 PF00005 ABC transporter AMED_4037 PF13732 AMED_4037 AMED_4038 PF03176 MMPL family AMED_4039 PF00291 Pyridoxal-phosphate dependent enzyme AMED_4040 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMED_4041 PF02222 ATP-grasp domain AMED_4042 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_4043 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4044 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4044 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4045 PF00550 Phosphopantetheine attachment site AMED_4046 PF00486 Transcriptional regulatory protein, C terminal AMED_4046 PF03704 Bacterial transcriptional activator domain AMED_4047 PF00137 ATP synthase subunit C AMED_4048 PF13563 2'-5' RNA ligase superfamily AMED_4050 PF08223 PaaX-like protein C-terminal domain AMED_4051 PF10503 Esterase PHB depolymerase AMED_4052 PF00512 His Kinase A (phospho-acceptor) domain AMED_4052 PF00672 HAMP domain AMED_4052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4053 PF00072 Response regulator receiver domain AMED_4053 PF00486 Transcriptional regulatory protein, C terminal AMED_4054 PF00144 Beta-lactamase AMED_4055 PF00459 Inositol monophosphatase family AMED_4056 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4056 PF03466 LysR substrate binding domain AMED_4057 PF13460 NADH(P)-binding AMED_4059 PF07690 Major Facilitator Superfamily AMED_4060 PF07848 PaaX-like protein AMED_4060 PF08223 PaaX-like protein C-terminal domain AMED_4061 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_4061 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_4063 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_4063 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_4063 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_4064 PF00550 Phosphopantetheine attachment site AMED_4065 PF00501 AMP-binding enzyme AMED_4065 PF00550 Phosphopantetheine attachment site AMED_4065 PF00668 Condensation domain AMED_4065 PF13193 AMP-binding enzyme C-terminal domain AMED_4065 PF13745 HxxPF-repeated domain AMED_4066 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4066 PF00550 Phosphopantetheine attachment site AMED_4066 PF00668 Condensation domain AMED_4066 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4066 PF13745 HxxPF-repeated domain AMED_4066 PF16197 AMED_4066 AMED_4068 PF00092 von Willebrand factor type A domain AMED_4068 PF03160 Calx-beta domain AMED_4069 PF01593 Flavin containing amine oxidoreductase AMED_4070 PF01593 Flavin containing amine oxidoreductase AMED_4071 PF01209 ubiE/COQ5 methyltransferase family AMED_4074 PF00494 Squalene/phytoene synthase AMED_4075 PF01593 Flavin containing amine oxidoreductase AMED_4076 PF00348 Polyprenyl synthetase AMED_4077 PF04240 AMED_4077 AMED_4078 PF13641 Glycosyltransferase like family 2 AMED_4079 PF01593 Flavin containing amine oxidoreductase AMED_4080 PF01066 CDP-alcohol phosphatidyltransferase AMED_4081 PF03631 AMED_4081 AMED_4082 PF13411 MerR HTH family regulatory protein AMED_4083 PF13411 MerR HTH family regulatory protein AMED_4084 PF00355 Rieske [2Fe-2S] domain AMED_4085 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4086 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4087 PF01547 Bacterial extracellular solute-binding protein AMED_4088 PF00356 Bacterial regulatory proteins, lacI family AMED_4088 PF13377 Periplasmic binding protein-like domain AMED_4089 PF00440 Bacterial regulatory proteins, tetR family AMED_4089 PF13977 Bacterial transcriptional repressor AMED_4090 PF07045 Protein of unknown function (DUF1330) AMED_4091 PF12697 Alpha/beta hydrolase family AMED_4092 PF00553 Cellulose binding domain AMED_4093 PF00754 F5/8 type C domain AMED_4093 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AMED_4094 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_4095 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_4096 PF12840 Helix-turn-helix domain AMED_4097 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_4097 PF00553 Cellulose binding domain AMED_4098 PF01370 NAD dependent epimerase/dehydratase family AMED_4099 PF00989 PAS fold AMED_4099 PF01590 GAF domain AMED_4099 PF07228 Stage II sporulation protein E (SpoIIE) AMED_4099 PF08447 PAS fold AMED_4099 PF13466 STAS domain AMED_4099 PF13581 Histidine kinase-like ATPase domain AMED_4101 PF00561 alpha/beta hydrolase fold AMED_4101 PF08386 TAP-like protein AMED_4103 PF00296 Luciferase-like monooxygenase AMED_4104 PF08787 Alginate lyase AMED_4105 PF00141 Peroxidase AMED_4106 PF01475 Ferric uptake regulator family AMED_4107 PF00303 Thymidylate synthase AMED_4108 PF00186 Dihydrofolate reductase AMED_4109 PF00732 GMC oxidoreductase AMED_4109 PF05199 GMC oxidoreductase AMED_4110 PF00171 Aldehyde dehydrogenase family AMED_4111 PF13091 PLD-like domain AMED_4112 PF05729 NACHT domain AMED_4113 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_4113 PF00175 Oxidoreductase NAD-binding domain AMED_4115 PF00355 Rieske [2Fe-2S] domain AMED_4116 PF01614 Bacterial transcriptional regulator AMED_4116 PF09339 IclR helix-turn-helix domain AMED_4117 PF03405 Fatty acid desaturase AMED_4118 PF03648 Glycosyl hydrolase family 67 N-terminus AMED_4118 PF07477 Glycosyl hydrolase family 67 C-terminus AMED_4118 PF07488 Glycosyl hydrolase family 67 middle domain AMED_4119 PF13087 AAA domain AMED_4119 PF13482 RNase_H superfamily AMED_4119 PF13604 AAA domain AMED_4121 PF00106 short chain dehydrogenase AMED_4124 PF05050 Methyltransferase FkbM domain AMED_4128 PF06150 ChaB AMED_4128 PF07498 Rho termination factor, N-terminal domain AMED_4130 PF01339 CheB methylesterase AMED_4131 PF01339 CheB methylesterase AMED_4133 PF00989 PAS fold AMED_4133 PF01739 CheR methyltransferase, SAM binding domain AMED_4133 PF03705 CheR methyltransferase, all-alpha domain AMED_4133 PF08448 PAS fold AMED_4135 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMED_4137 PF08922 Domain of unknown function (DUF1905) AMED_4138 PF02575 YbaB/EbfC DNA-binding family AMED_4142 PF13581 Histidine kinase-like ATPase domain AMED_4144 PF07690 Major Facilitator Superfamily AMED_4145 PF06245 AMED_4145 AMED_4147 PF04978 Protein of unknown function (DUF664) AMED_4148 PF01068 ATP dependent DNA ligase domain AMED_4148 PF04679 ATP dependent DNA ligase C terminal region AMED_4150 PF06779 AMED_4150 AMED_4151 PF00440 Bacterial regulatory proteins, tetR family AMED_4153 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMED_4153 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMED_4154 PF02898 Nitric oxide synthase, oxygenase domain AMED_4155 PF12724 Flavodoxin domain AMED_4156 PF07690 Major Facilitator Superfamily AMED_4157 PF13088 BNR repeat-like domain AMED_4158 PF03601 AMED_4158 AMED_4159 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4159 PF03466 LysR substrate binding domain AMED_4160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4160 PF03466 LysR substrate binding domain AMED_4161 PF01370 NAD dependent epimerase/dehydratase family AMED_4162 PF03551 Transcriptional regulator PadR-like family AMED_4163 PF13847 Methyltransferase domain AMED_4164 PF00246 Zinc carboxypeptidase AMED_4166 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMED_4166 PF00364 Biotin-requiring enzyme AMED_4166 PF01039 Carboxyl transferase domain AMED_4166 PF02785 Biotin carboxylase C-terminal domain AMED_4166 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_4166 PF08326 AMED_4166 AMED_4170 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMED_4172 PF07690 Major Facilitator Superfamily AMED_4173 PF00155 Aminotransferase class I and II AMED_4173 PF00392 Bacterial regulatory proteins, gntR family AMED_4174 PF07690 Major Facilitator Superfamily AMED_4175 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_4176 PF02577 Bifunctional nuclease AMED_4177 PF04542 Sigma-70 region 2 AMED_4177 PF08281 Sigma-70, region 4 AMED_4177 PF12680 SnoaL-like domain AMED_4178 PF09860 AMED_4178 AMED_4179 PF00501 AMP-binding enzyme AMED_4180 PF00550 Phosphopantetheine attachment site AMED_4182 PF06013 Proteins of 100 residues with WXG AMED_4184 PF13649 Methyltransferase domain AMED_4187 PF01814 Hemerythrin HHE cation binding domain AMED_4189 PF13298 DNA polymerase Ligase (LigD) AMED_4190 PF00294 pfkB family carbohydrate kinase AMED_4191 PF00270 DEAD/DEAH box helicase AMED_4191 PF00271 Helicase conserved C-terminal domain AMED_4191 PF16124 AMED_4191 AMED_4192 PF03861 ANTAR domain AMED_4193 PF13466 STAS domain AMED_4194 PF07228 Stage II sporulation protein E (SpoIIE) AMED_4195 PF03861 ANTAR domain AMED_4195 PF13185 GAF domain AMED_4196 PF03861 ANTAR domain AMED_4196 PF13185 GAF domain AMED_4199 PF04072 Leucine carboxyl methyltransferase AMED_4200 PF07859 alpha/beta hydrolase fold AMED_4201 PF00440 Bacterial regulatory proteins, tetR family AMED_4202 PF13564 AMED_4202 AMED_4203 PF00561 alpha/beta hydrolase fold AMED_4204 PF00756 Putative esterase AMED_4207 PF00355 Rieske [2Fe-2S] domain AMED_4209 PF02146 Sir2 family AMED_4210 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_4211 PF01152 Bacterial-like globin AMED_4212 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_4213 PF01381 Helix-turn-helix AMED_4213 PF07883 Cupin domain AMED_4214 PF13420 Acetyltransferase (GNAT) domain AMED_4215 PF07883 Cupin domain AMED_4215 PF13560 Helix-turn-helix domain AMED_4216 PF00009 Elongation factor Tu GTP binding domain AMED_4216 PF03143 Elongation factor Tu C-terminal domain AMED_4216 PF03144 Elongation factor Tu domain 2 AMED_4217 PF12708 Pectate lyase superfamily protein AMED_4217 PF13229 Right handed beta helix region AMED_4219 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMED_4219 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AMED_4220 PF00682 HMGL-like AMED_4220 PF07836 DmpG-like communication domain AMED_4222 PF01494 FAD binding domain AMED_4223 PF00440 Bacterial regulatory proteins, tetR family AMED_4224 PF08980 Domain of unknown function (DUF1883) AMED_4225 PF01425 Amidase AMED_4226 PF00144 Beta-lactamase AMED_4227 PF01810 AMED_4227 AMED_4228 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMED_4230 PF09859 AMED_4230 AMED_4231 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMED_4231 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMED_4232 PF04542 Sigma-70 region 2 AMED_4232 PF08281 Sigma-70, region 4 AMED_4233 PF05175 Methyltransferase small domain AMED_4234 PF03734 L,D-transpeptidase catalytic domain AMED_4235 PF13520 Amino acid permease AMED_4236 PF01037 AsnC family AMED_4236 PF13404 AsnC-type helix-turn-helix domain AMED_4237 PF00202 Aminotransferase class-III AMED_4238 PF00067 Cytochrome P450 AMED_4240 PF00072 Response regulator receiver domain AMED_4240 PF00196 Bacterial regulatory proteins, luxR family AMED_4241 PF00082 Subtilase family AMED_4244 PF00069 Protein kinase domain AMED_4244 PF00553 Cellulose binding domain AMED_4245 PF14279 AMED_4245 AMED_4246 PF00183 Hsp90 protein AMED_4246 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4247 PF03663 Glycosyl hydrolase family 76 AMED_4248 PF00127 Copper binding proteins, plastocyanin/azurin family AMED_4250 PF00127 Copper binding proteins, plastocyanin/azurin family AMED_4251 PF05425 AMED_4251 AMED_4253 PF04234 CopC domain AMED_4255 PF00156 Phosphoribosyl transferase domain AMED_4257 PF13411 MerR HTH family regulatory protein AMED_4260 PF14325 AMED_4260 AMED_4261 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_4262 PF11387 AMED_4262 AMED_4263 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMED_4264 PF00535 Glycosyl transferase family 2 AMED_4264 PF13242 HAD-hyrolase-like AMED_4265 PF00171 Aldehyde dehydrogenase family AMED_4266 PF06081 AMED_4266 AMED_4268 PF03358 NADPH-dependent FMN reductase AMED_4269 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMED_4269 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMED_4269 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMED_4270 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMED_4271 PF00106 short chain dehydrogenase AMED_4272 PF00294 pfkB family carbohydrate kinase AMED_4272 PF01467 Cytidylyltransferase AMED_4273 PF13580 SIS domain AMED_4274 PF02543 Carbamoyltransferase AMED_4274 PF16861 AMED_4274 AMED_4275 PF16363 AMED_4275 AMED_4276 PF04230 AMED_4276 AMED_4277 PF00535 Glycosyl transferase family 2 AMED_4278 PF00535 Glycosyl transferase family 2 AMED_4279 PF00534 Glycosyl transferases group 1 AMED_4279 PF13439 Glycosyltransferase Family 4 AMED_4280 PF00534 Glycosyl transferases group 1 AMED_4281 PF01865 Protein of unknown function DUF47 AMED_4282 PF01384 AMED_4282 AMED_4283 PF00107 Zinc-binding dehydrogenase AMED_4283 PF08240 Alcohol dehydrogenase GroES-like domain AMED_4283 PF13823 Alcohol dehydrogenase GroES-associated AMED_4284 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_4284 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_4285 PF01370 NAD dependent epimerase/dehydratase family AMED_4286 PF01593 Flavin containing amine oxidoreductase AMED_4287 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_4288 PF03631 AMED_4288 AMED_4291 PF01028 Eukaryotic DNA topoisomerase I, catalytic core AMED_4292 PF07098 AMED_4292 AMED_4293 PF00355 Rieske [2Fe-2S] domain AMED_4293 PF01266 FAD dependent oxidoreductase AMED_4294 PF13535 ATP-grasp domain AMED_4296 PF05175 Methyltransferase small domain AMED_4297 PF09360 Iron-binding zinc finger CDGSH type AMED_4298 PF14518 Iron-containing redox enzyme AMED_4299 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_4300 PF13466 STAS domain AMED_4301 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_4302 PF01814 Hemerythrin HHE cation binding domain AMED_4303 PF01276 Orn/Lys/Arg decarboxylase, major domain AMED_4303 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AMED_4304 PF01546 Peptidase family M20/M25/M40 AMED_4304 PF07687 Peptidase dimerisation domain AMED_4305 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMED_4306 PF00296 Luciferase-like monooxygenase AMED_4307 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4308 PF00005 ABC transporter AMED_4309 PF09084 NMT1/THI5 like AMED_4310 PF00480 ROK family AMED_4311 PF08279 HTH domain AMED_4311 PF13280 AMED_4311 AMED_4312 PF06441 Epoxide hydrolase N terminus AMED_4313 PF06224 AMED_4313 AMED_4314 PF00486 Transcriptional regulatory protein, C terminal AMED_4314 PF03704 Bacterial transcriptional activator domain AMED_4315 PF01494 FAD binding domain AMED_4316 PF01230 HIT domain AMED_4317 PF13556 PucR C-terminal helix-turn-helix domain AMED_4320 PF01047 MarR family AMED_4321 PF13628 AMED_4321 AMED_4322 PF02954 Bacterial regulatory protein, Fis family AMED_4324 PF02332 Methane/Phenol/Toluene Hydroxylase AMED_4325 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_4325 PF00175 Oxidoreductase NAD-binding domain AMED_4325 PF00970 Oxidoreductase FAD-binding domain AMED_4326 PF02332 Methane/Phenol/Toluene Hydroxylase AMED_4327 PF02406 MmoB/DmpM family AMED_4328 PF04909 Amidohydrolase AMED_4329 PF01883 Domain of unknown function DUF59 AMED_4330 PF00107 Zinc-binding dehydrogenase AMED_4330 PF08240 Alcohol dehydrogenase GroES-like domain AMED_4331 PF00118 TCP-1/cpn60 chaperonin family AMED_4332 PF13676 TIR domain AMED_4333 PF00534 Glycosyl transferases group 1 AMED_4333 PF00931 NB-ARC domain AMED_4333 PF13560 Helix-turn-helix domain AMED_4335 PF00440 Bacterial regulatory proteins, tetR family AMED_4336 PF06441 Epoxide hydrolase N terminus AMED_4337 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_4338 PF13409 Glutathione S-transferase, N-terminal domain AMED_4338 PF13410 Glutathione S-transferase, C-terminal domain AMED_4339 PF12802 MarR family AMED_4340 PF04264 YceI-like domain AMED_4341 PF00440 Bacterial regulatory proteins, tetR family AMED_4342 PF13576 Pentapeptide repeats (9 copies) AMED_4343 PF01055 Glycosyl hydrolases family 31 AMED_4344 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4345 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4346 PF13416 Bacterial extracellular solute-binding protein AMED_4347 PF00356 Bacterial regulatory proteins, lacI family AMED_4347 PF13377 Periplasmic binding protein-like domain AMED_4348 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_4348 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_4348 PF03422 Carbohydrate binding module (family 6) AMED_4348 PF14310 Fibronectin type III-like domain AMED_4349 PF04672 S-adenosyl methyltransferase AMED_4350 PF00067 Cytochrome P450 AMED_4351 PF12146 Putative lysophospholipase AMED_4352 PF00563 EAL domain AMED_4352 PF00989 PAS fold AMED_4352 PF00990 GGDEF domain AMED_4353 PF00881 Nitroreductase family AMED_4355 PF02754 AMED_4355 AMED_4355 PF13183 4Fe-4S dicluster domain AMED_4356 PF00498 FHA domain AMED_4358 PF00083 Sugar (and other) transporter AMED_4358 PF07690 Major Facilitator Superfamily AMED_4359 PF00440 Bacterial regulatory proteins, tetR family AMED_4360 PF08501 Shikimate dehydrogenase substrate binding domain AMED_4361 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_4361 PF01261 Xylose isomerase-like TIM barrel AMED_4362 PF01547 Bacterial extracellular solute-binding protein AMED_4363 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4364 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4365 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_4366 PF00515 Tetratricopeptide repeat AMED_4366 PF13181 Tetratricopeptide repeat AMED_4366 PF13191 AAA ATPase domain AMED_4366 PF13432 Tetratricopeptide repeat AMED_4366 PF14559 Tetratricopeptide repeat AMED_4368 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) AMED_4369 PF00583 Acetyltransferase (GNAT) family AMED_4370 PF07690 Major Facilitator Superfamily AMED_4371 PF02624 YcaO-like family AMED_4373 PF04237 YjbR AMED_4374 PF09362 AMED_4374 AMED_4376 PF04542 Sigma-70 region 2 AMED_4376 PF04545 Sigma-70, region 4 AMED_4377 PF12900 Pyridoxamine 5'-phosphate oxidase AMED_4378 PF07730 Histidine kinase AMED_4378 PF13185 GAF domain AMED_4379 PF00072 Response regulator receiver domain AMED_4379 PF00196 Bacterial regulatory proteins, luxR family AMED_4381 PF08592 AMED_4381 AMED_4382 PF00440 Bacterial regulatory proteins, tetR family AMED_4383 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_4383 PF14759 Reductase C-terminal AMED_4384 PF01227 GTP cyclohydrolase I AMED_4385 PF12840 Helix-turn-helix domain AMED_4387 PF00356 Bacterial regulatory proteins, lacI family AMED_4387 PF13377 Periplasmic binding protein-like domain AMED_4388 PF01301 Glycosyl hydrolases family 35 AMED_4388 PF08305 NPCBM/NEW2 domain AMED_4388 PF10435 Beta-galactosidase, domain 2 AMED_4388 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AMED_4388 PF13363 Beta-galactosidase, domain 3 AMED_4388 PF13364 Beta-galactosidase jelly roll domain AMED_4390 PF01810 AMED_4390 AMED_4391 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_4392 PF00553 Cellulose binding domain AMED_4392 PF13229 Right handed beta helix region AMED_4394 PF00768 D-alanyl-D-alanine carboxypeptidase AMED_4395 PF03372 Endonuclease/Exonuclease/phosphatase family AMED_4396 PF00356 Bacterial regulatory proteins, lacI family AMED_4396 PF13377 Periplasmic binding protein-like domain AMED_4397 PF13407 Periplasmic binding protein domain AMED_4398 PF00005 ABC transporter AMED_4399 PF02653 AMED_4399 AMED_4400 PF02653 AMED_4400 AMED_4401 PF06964 Alpha-L-arabinofuranosidase C-terminus AMED_4401 PF13385 Concanavalin A-like lectin/glucanases superfamily AMED_4402 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_4402 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_4403 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_4404 PF02610 L-arabinose isomerase AMED_4404 PF11762 L-arabinose isomerase C-terminal domain AMED_4405 PF13407 Periplasmic binding protein domain AMED_4406 PF00005 ABC transporter AMED_4407 PF02653 AMED_4407 AMED_4408 PF09362 AMED_4408 AMED_4409 PF13377 Periplasmic binding protein-like domain AMED_4410 PF00067 Cytochrome P450 AMED_4411 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_4411 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_4412 PF01614 Bacterial transcriptional regulator AMED_4412 PF09339 IclR helix-turn-helix domain AMED_4413 PF00230 Major intrinsic protein AMED_4414 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_4414 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_4415 PF01266 FAD dependent oxidoreductase AMED_4415 PF16901 AMED_4415 AMED_4416 PF01636 Phosphotransferase enzyme family AMED_4417 PF00764 Arginosuccinate synthase AMED_4418 PF13602 Zinc-binding dehydrogenase AMED_4419 PF00440 Bacterial regulatory proteins, tetR family AMED_4420 PF00486 Transcriptional regulatory protein, C terminal AMED_4420 PF00931 NB-ARC domain AMED_4420 PF03704 Bacterial transcriptional activator domain AMED_4420 PF13424 Tetratricopeptide repeat AMED_4422 PF12385 AMED_4422 AMED_4424 PF01037 AsnC family AMED_4424 PF13404 AsnC-type helix-turn-helix domain AMED_4425 PF00144 Beta-lactamase AMED_4426 PF01565 FAD binding domain AMED_4426 PF04030 D-arabinono-1,4-lactone oxidase AMED_4427 PF00356 Bacterial regulatory proteins, lacI family AMED_4427 PF13377 Periplasmic binding protein-like domain AMED_4428 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_4429 PF01547 Bacterial extracellular solute-binding protein AMED_4430 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4431 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4432 PF04854 AMED_4432 AMED_4433 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_4434 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_4434 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_4435 PF14100 AMED_4435 AMED_4436 PF00544 Pectate lyase AMED_4437 PF03211 Pectate lyase AMED_4438 PF01095 Pectinesterase AMED_4439 PF04616 Glycosyl hydrolases family 43 AMED_4440 PF01301 Glycosyl hydrolases family 35 AMED_4440 PF10435 Beta-galactosidase, domain 2 AMED_4440 PF13364 Beta-galactosidase jelly roll domain AMED_4441 PF13466 STAS domain AMED_4442 PF00486 Transcriptional regulatory protein, C terminal AMED_4442 PF03704 Bacterial transcriptional activator domain AMED_4445 PF00582 Universal stress protein family AMED_4446 PF01478 Type IV leader peptidase family AMED_4446 PF06750 AMED_4446 AMED_4448 PF13633 Prokaryotic N-terminal methylation site AMED_4450 PF00482 Type II secretion system (T2SS), protein F AMED_4451 PF00437 Type II/IV secretion system protein AMED_4451 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMED_4452 PF00437 Type II/IV secretion system protein AMED_4453 PF13544 AMED_4453 AMED_4458 PF01370 NAD dependent epimerase/dehydratase family AMED_4458 PF08338 Domain of unknown function (DUF1731) AMED_4459 PF13556 PucR C-terminal helix-turn-helix domain AMED_4460 PF07859 alpha/beta hydrolase fold AMED_4461 PF00107 Zinc-binding dehydrogenase AMED_4461 PF08240 Alcohol dehydrogenase GroES-like domain AMED_4463 PF00483 Nucleotidyl transferase AMED_4464 PF00534 Glycosyl transferases group 1 AMED_4464 PF13439 Glycosyltransferase Family 4 AMED_4466 PF13466 STAS domain AMED_4467 PF02607 B12 binding domain AMED_4467 PF13411 MerR HTH family regulatory protein AMED_4468 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_4469 PF00703 Glycosyl hydrolases family 2 AMED_4469 PF00754 F5/8 type C domain AMED_4471 PF13556 PucR C-terminal helix-turn-helix domain AMED_4472 PF00009 Elongation factor Tu GTP binding domain AMED_4472 PF00679 Elongation factor G C-terminus AMED_4472 PF03144 Elongation factor Tu domain 2 AMED_4472 PF03764 Elongation factor G, domain IV AMED_4472 PF14492 Elongation Factor G, domain II AMED_4473 PF00266 Aminotransferase class-V AMED_4475 PF09594 AMED_4475 AMED_4476 PF14325 AMED_4476 AMED_4477 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_4478 PF01494 FAD binding domain AMED_4479 PF04075 Domain of unknown function (DUF385) AMED_4480 PF12802 MarR family AMED_4481 PF07690 Major Facilitator Superfamily AMED_4482 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4482 PF00550 Phosphopantetheine attachment site AMED_4482 PF00698 Acyl transferase domain AMED_4482 PF00975 Thioesterase domain AMED_4482 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4482 PF16197 AMED_4482 AMED_4483 PF00501 AMP-binding enzyme AMED_4485 PF00756 Putative esterase AMED_4486 PF00106 short chain dehydrogenase AMED_4487 PF03033 Glycosyltransferase family 28 N-terminal domain AMED_4488 PF02698 DUF218 domain AMED_4489 PF13298 DNA polymerase Ligase (LigD) AMED_4490 PF06197 AMED_4490 AMED_4491 PF01513 ATP-NAD kinase AMED_4492 PF00743 Flavin-binding monooxygenase-like AMED_4492 PF13450 NAD(P)-binding Rossmann-like domain AMED_4493 PF00106 short chain dehydrogenase AMED_4494 PF00561 alpha/beta hydrolase fold AMED_4495 PF00067 Cytochrome P450 AMED_4496 PF00440 Bacterial regulatory proteins, tetR family AMED_4497 PF00931 NB-ARC domain AMED_4497 PF13424 Tetratricopeptide repeat AMED_4498 PF00381 PTS HPr component phosphorylation site AMED_4499 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMED_4499 PF02378 Phosphotransferase system, EIIC AMED_4500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMED_4501 PF00294 pfkB family carbohydrate kinase AMED_4502 PF00455 AMED_4502 AMED_4502 PF08220 DeoR-like helix-turn-helix domain AMED_4503 PF00391 PEP-utilising enzyme, mobile domain AMED_4503 PF02896 PEP-utilising enzyme, TIM barrel domain AMED_4503 PF05524 PEP-utilising enzyme, N-terminal AMED_4504 PF00899 ThiF family AMED_4505 PF03780 AMED_4505 AMED_4506 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_4507 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_4507 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_4507 PF14310 Fibronectin type III-like domain AMED_4508 PF00356 Bacterial regulatory proteins, lacI family AMED_4508 PF13377 Periplasmic binding protein-like domain AMED_4509 PF01547 Bacterial extracellular solute-binding protein AMED_4510 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4511 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4512 PF15979 AMED_4512 AMED_4513 PF00356 Bacterial regulatory proteins, lacI family AMED_4513 PF13377 Periplasmic binding protein-like domain AMED_4514 PF00331 Glycosyl hydrolase family 10 AMED_4515 PF01522 Polysaccharide deacetylase AMED_4516 PF00487 AMED_4516 AMED_4517 PF00313 'Cold-shock' DNA-binding domain AMED_4518 PF02353 Mycolic acid cyclopropane synthetase AMED_4519 PF01565 FAD binding domain AMED_4523 PF13340 AMED_4523 AMED_4524 PF13586 AMED_4524 AMED_4525 PF01544 CorA-like Mg2+ transporter protein AMED_4526 PF00072 Response regulator receiver domain AMED_4526 PF00512 His Kinase A (phospho-acceptor) domain AMED_4526 PF00672 HAMP domain AMED_4526 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4526 PF13185 GAF domain AMED_4527 PF03861 ANTAR domain AMED_4527 PF07228 Stage II sporulation protein E (SpoIIE) AMED_4527 PF08447 PAS fold AMED_4527 PF13185 GAF domain AMED_4528 PF01699 Sodium/calcium exchanger protein AMED_4529 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4529 PF03466 LysR substrate binding domain AMED_4530 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_4530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_4530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_4532 PF07510 AMED_4532 AMED_4533 PF03881 Fructosamine kinase AMED_4534 PF00583 Acetyltransferase (GNAT) family AMED_4535 PF01433 Peptidase family M1 AMED_4535 PF05345 Putative Ig domain AMED_4536 PF04343 AMED_4536 AMED_4537 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_4537 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_4538 PF00356 Bacterial regulatory proteins, lacI family AMED_4538 PF13377 Periplasmic binding protein-like domain AMED_4539 PF00005 ABC transporter AMED_4540 PF02653 AMED_4540 AMED_4541 PF02653 AMED_4541 AMED_4542 PF13407 Periplasmic binding protein domain AMED_4543 PF05336 Domain of unknown function (DUF718) AMED_4544 PF06134 L-rhamnose isomerase (RhaA) AMED_4545 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_4545 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_4546 PF02610 L-arabinose isomerase AMED_4547 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMED_4547 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMED_4548 PF00072 Response regulator receiver domain AMED_4548 PF00196 Bacterial regulatory proteins, luxR family AMED_4549 PF07730 Histidine kinase AMED_4551 PF00356 Bacterial regulatory proteins, lacI family AMED_4551 PF13377 Periplasmic binding protein-like domain AMED_4552 PF01055 Glycosyl hydrolases family 31 AMED_4552 PF03422 Carbohydrate binding module (family 6) AMED_4552 PF16990 AMED_4552 AMED_4552 PF17137 AMED_4552 AMED_4553 PF03713 Domain of unknown function (DUF305) AMED_4554 PF09362 AMED_4554 AMED_4555 PF00754 F5/8 type C domain AMED_4555 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_4556 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_4557 PF12833 Helix-turn-helix domain AMED_4561 PF13563 2'-5' RNA ligase superfamily AMED_4563 PF00817 impB/mucB/samB family AMED_4563 PF11798 IMS family HHH motif AMED_4563 PF11799 impB/mucB/samB family C-terminal domain AMED_4564 PF04072 Leucine carboxyl methyltransferase AMED_4565 PF11774 Lsr2 AMED_4566 PF07690 Major Facilitator Superfamily AMED_4567 PF02634 FdhD/NarQ family AMED_4568 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4568 PF03466 LysR substrate binding domain AMED_4569 PF00549 CoA-ligase AMED_4569 PF02629 CoA binding domain AMED_4570 PF00549 CoA-ligase AMED_4570 PF08442 ATP-grasp domain AMED_4571 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_4571 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_4571 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_4572 PF02515 CoA-transferase family III AMED_4573 PF13380 CoA binding domain AMED_4573 PF13549 ATP-grasp domain AMED_4573 PF13607 Succinyl-CoA ligase like flavodoxin domain AMED_4574 PF07690 Major Facilitator Superfamily AMED_4575 PF00392 Bacterial regulatory proteins, gntR family AMED_4575 PF07729 FCD domain AMED_4576 PF02558 Ketopantoate reductase PanE/ApbA AMED_4576 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMED_4577 PF00384 Molybdopterin oxidoreductase AMED_4577 PF01568 Molydopterin dinucleotide binding domain AMED_4578 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AMED_4578 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMED_4578 PF10531 SLBB domain AMED_4578 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMED_4579 PF00037 4Fe-4S binding domain AMED_4579 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMED_4579 PF13510 2Fe-2S iron-sulfur cluster binding domain AMED_4580 PF01261 Xylose isomerase-like TIM barrel AMED_4581 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_4581 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_4582 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_4582 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_4582 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_4583 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_4583 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_4584 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_4584 PF01799 [2Fe-2S] binding domain AMED_4585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_4585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_4586 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMED_4587 PF00860 Permease family AMED_4588 PF06094 AIG2-like family AMED_4589 PF02595 Glycerate kinase family AMED_4590 PF00440 Bacterial regulatory proteins, tetR family AMED_4591 PF00723 Glycosyl hydrolases family 15 AMED_4591 PF09137 Glucodextranase, domain N AMED_4592 PF01513 ATP-NAD kinase AMED_4593 PF01145 SPFH domain / Band 7 family AMED_4594 PF00293 NUDIX domain AMED_4595 PF01494 FAD binding domain AMED_4596 PF00440 Bacterial regulatory proteins, tetR family AMED_4596 PF02796 Helix-turn-helix domain of resolvase AMED_4597 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_4597 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_4597 PF02929 Beta galactosidase small chain AMED_4597 PF16353 AMED_4597 AMED_4598 PF00356 Bacterial regulatory proteins, lacI family AMED_4598 PF13377 Periplasmic binding protein-like domain AMED_4599 PF00324 Amino acid permease AMED_4600 PF04960 Glutaminase AMED_4601 PF13086 AAA domain AMED_4601 PF13087 AAA domain AMED_4601 PF13245 Part of AAA domain AMED_4602 PF08348 AMED_4602 AMED_4602 PF13309 AMED_4602 AMED_4603 PF00291 Pyridoxal-phosphate dependent enzyme AMED_4604 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4604 PF00550 Phosphopantetheine attachment site AMED_4604 PF00698 Acyl transferase domain AMED_4604 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4604 PF03060 Nitronate monooxygenase AMED_4604 PF08659 KR domain AMED_4605 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_4605 PF00698 Acyl transferase domain AMED_4605 PF01648 4'-phosphopantetheinyl transferase superfamily AMED_4605 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_4605 PF14765 Polyketide synthase dehydratase AMED_4605 PF16197 AMED_4605 AMED_4606 PF00550 Phosphopantetheine attachment site AMED_4607 PF00561 alpha/beta hydrolase fold AMED_4608 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMED_4609 PF00106 short chain dehydrogenase AMED_4610 PF07690 Major Facilitator Superfamily AMED_4611 PF02811 PHP domain AMED_4612 PF01896 Eukaryotic and archaeal DNA primase small subunit AMED_4613 PF00108 Thiolase, N-terminal domain AMED_4613 PF02803 Thiolase, C-terminal domain AMED_4614 PF01638 HxlR-like helix-turn-helix AMED_4615 PF00754 F5/8 type C domain AMED_4615 PF07705 CARDB AMED_4616 PF13460 NADH(P)-binding AMED_4617 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMED_4617 PF14498 Glycosyl hydrolase family 65, N-terminal domain AMED_4618 PF13564 AMED_4618 AMED_4619 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4619 PF03466 LysR substrate binding domain AMED_4620 PF13419 Haloacid dehalogenase-like hydrolase AMED_4622 PF02515 CoA-transferase family III AMED_4623 PF02515 CoA-transferase family III AMED_4624 PF00356 Bacterial regulatory proteins, lacI family AMED_4624 PF13377 Periplasmic binding protein-like domain AMED_4625 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMED_4626 PF01546 Peptidase family M20/M25/M40 AMED_4626 PF07687 Peptidase dimerisation domain AMED_4627 PF12697 Alpha/beta hydrolase family AMED_4628 PF08241 Methyltransferase domain AMED_4629 PF13411 MerR HTH family regulatory protein AMED_4630 PF12840 Helix-turn-helix domain AMED_4631 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_4634 PF00248 Aldo/keto reductase family AMED_4635 PF00296 Luciferase-like monooxygenase AMED_4636 PF02673 AMED_4636 AMED_4637 PF00300 Histidine phosphatase superfamily (branch 1) AMED_4638 PF01432 Peptidase family M3 AMED_4639 PF00574 Clp protease AMED_4640 PF00056 lactate/malate dehydrogenase, NAD binding domain AMED_4640 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMED_4641 PF01047 MarR family AMED_4642 PF14534 Domain of unknown function (DUF4440) AMED_4644 PF14273 AMED_4644 AMED_4645 PF13515 AMED_4645 AMED_4646 PF07971 Glycosyl hydrolase family 92 AMED_4647 PF00754 F5/8 type C domain AMED_4647 PF07971 Glycosyl hydrolase family 92 AMED_4648 PF07519 Tannase and feruloyl esterase AMED_4649 PF13649 Methyltransferase domain AMED_4650 PF12833 Helix-turn-helix domain AMED_4651 PF13602 Zinc-binding dehydrogenase AMED_4652 PF01738 Dienelactone hydrolase family AMED_4653 PF01546 Peptidase family M20/M25/M40 AMED_4653 PF07687 Peptidase dimerisation domain AMED_4654 PF04951 D-aminopeptidase AMED_4655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_4656 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4657 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4658 PF00005 ABC transporter AMED_4658 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_4660 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_4661 PF02016 LD-carboxypeptidase AMED_4662 PF00326 Prolyl oligopeptidase family AMED_4663 PF11290 AMED_4663 AMED_4665 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AMED_4666 PF11296 AMED_4666 AMED_4667 PF01957 NfeD-like C-terminal, partner-binding AMED_4668 PF01145 SPFH domain / Band 7 family AMED_4669 PF01145 SPFH domain / Band 7 family AMED_4670 PF00962 Adenosine/AMP deaminase AMED_4672 PF00188 Cysteine-rich secretory protein family AMED_4673 PF00924 Mechanosensitive ion channel AMED_4674 PF00083 Sugar (and other) transporter AMED_4674 PF07690 Major Facilitator Superfamily AMED_4675 PF00440 Bacterial regulatory proteins, tetR family AMED_4676 PF01494 FAD binding domain AMED_4677 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_4678 PF12840 Helix-turn-helix domain AMED_4679 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_4680 PF00440 Bacterial regulatory proteins, tetR family AMED_4681 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_4682 PF01872 RibD C-terminal domain AMED_4684 PF11706 CGNR zinc finger AMED_4686 PF00589 Phage integrase family AMED_4688 PF03795 YCII-related domain AMED_4689 PF04542 Sigma-70 region 2 AMED_4691 PF12840 Helix-turn-helix domain AMED_4692 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_4695 PF00440 Bacterial regulatory proteins, tetR family AMED_4696 PF12833 Helix-turn-helix domain AMED_4696 PF12852 Cupin AMED_4697 PF13460 NADH(P)-binding AMED_4698 PF08592 AMED_4698 AMED_4699 PF06445 GyrI-like small molecule binding domain AMED_4700 PF03795 YCII-related domain AMED_4701 PF00561 alpha/beta hydrolase fold AMED_4702 PF04542 Sigma-70 region 2 AMED_4702 PF08281 Sigma-70, region 4 AMED_4703 PF00440 Bacterial regulatory proteins, tetR family AMED_4704 PF00067 Cytochrome P450 AMED_4705 PF00440 Bacterial regulatory proteins, tetR family AMED_4705 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_4706 PF00005 ABC transporter AMED_4707 PF01061 AMED_4707 AMED_4708 PF00176 SNF2 family N-terminal domain AMED_4708 PF00271 Helicase conserved C-terminal domain AMED_4708 PF12419 AMED_4708 AMED_4710 PF01494 FAD binding domain AMED_4711 PF00440 Bacterial regulatory proteins, tetR family AMED_4712 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_4713 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_4713 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_4714 PF00440 Bacterial regulatory proteins, tetR family AMED_4717 PF01381 Helix-turn-helix AMED_4718 PF13420 Acetyltransferase (GNAT) domain AMED_4719 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_4720 PF12840 Helix-turn-helix domain AMED_4721 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_4722 PF00589 Phage integrase family AMED_4724 PF03009 Glycerophosphoryl diester phosphodiesterase family AMED_4725 PF01471 Putative peptidoglycan binding domain AMED_4725 PF06737 Transglycosylase-like domain AMED_4726 PF11700 AMED_4726 AMED_4727 PF00265 Thymidine kinase AMED_4728 PF13397 Domain of unknown function (DUF4109) AMED_4729 PF00293 NUDIX domain AMED_4730 PF00455 AMED_4730 AMED_4730 PF08220 DeoR-like helix-turn-helix domain AMED_4731 PF02585 GlcNAc-PI de-N-acetylase AMED_4732 PF00535 Glycosyl transferase family 2 AMED_4733 PF00795 Carbon-nitrogen hydrolase AMED_4734 PF07969 Amidohydrolase family AMED_4738 PF01965 DJ-1/PfpI family AMED_4738 PF12833 Helix-turn-helix domain AMED_4739 PF01638 HxlR-like helix-turn-helix AMED_4743 PF00486 Transcriptional regulatory protein, C terminal AMED_4743 PF00931 NB-ARC domain AMED_4743 PF03704 Bacterial transcriptional activator domain AMED_4744 PF13358 DDE superfamily endonuclease AMED_4744 PF13565 AMED_4744 AMED_4745 PF05147 Lanthionine synthetase C-like protein AMED_4745 PF13575 AMED_4745 AMED_4747 PF00486 Transcriptional regulatory protein, C terminal AMED_4747 PF03704 Bacterial transcriptional activator domain AMED_4748 PF13522 Glutamine amidotransferase domain AMED_4749 PF02310 B12 binding domain AMED_4750 PF06368 Methylaspartate mutase E chain (MutE) AMED_4751 PF00152 tRNA synthetases class II (D, K and N) AMED_4752 PF01645 Conserved region in glutamate synthase AMED_4753 PF00501 AMP-binding enzyme AMED_4753 PF13193 AMP-binding enzyme C-terminal domain AMED_4754 PF12680 SnoaL-like domain AMED_4755 PF01063 Aminotransferase class IV AMED_4757 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_4757 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_4757 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_4758 PF13560 Helix-turn-helix domain AMED_4759 PF01212 Beta-eliminating lyase AMED_4760 PF13535 ATP-grasp domain AMED_4761 PF00206 Lyase AMED_4761 PF14698 Argininosuccinate lyase C-terminal AMED_4762 PF00291 Pyridoxal-phosphate dependent enzyme AMED_4763 PF00975 Thioesterase domain AMED_4765 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_4765 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_4766 PF00698 Acyl transferase domain AMED_4767 PF00144 Beta-lactamase AMED_4767 PF00501 AMP-binding enzyme AMED_4767 PF00550 Phosphopantetheine attachment site AMED_4767 PF00668 Condensation domain AMED_4767 PF13193 AMP-binding enzyme C-terminal domain AMED_4767 PF13745 HxxPF-repeated domain AMED_4768 PF03621 MbtH-like protein AMED_4769 PF00501 AMP-binding enzyme AMED_4769 PF00550 Phosphopantetheine attachment site AMED_4769 PF00668 Condensation domain AMED_4769 PF13193 AMP-binding enzyme C-terminal domain AMED_4769 PF13745 HxxPF-repeated domain AMED_4770 PF00501 AMP-binding enzyme AMED_4770 PF00550 Phosphopantetheine attachment site AMED_4770 PF13193 AMP-binding enzyme C-terminal domain AMED_4771 PF00288 GHMP kinases N terminal domain AMED_4771 PF08544 GHMP kinases C terminal AMED_4772 PF05977 Transmembrane secretion effector AMED_4773 PF01546 Peptidase family M20/M25/M40 AMED_4774 PF12840 Helix-turn-helix domain AMED_4774 PF13649 Methyltransferase domain AMED_4775 PF00155 Aminotransferase class I and II AMED_4776 PF00486 Transcriptional regulatory protein, C terminal AMED_4776 PF03704 Bacterial transcriptional activator domain AMED_4777 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4777 PF03466 LysR substrate binding domain AMED_4778 PF01494 FAD binding domain AMED_4779 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_4779 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_4780 PF13577 SnoaL-like domain AMED_4781 PF07978 NIPSNAP AMED_4782 PF03069 Acetamidase/Formamidase family AMED_4787 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_4787 PF13378 Enolase C-terminal domain-like AMED_4788 PF00392 Bacterial regulatory proteins, gntR family AMED_4788 PF07729 FCD domain AMED_4789 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4790 PF00528 Binding-protein-dependent transport system inner membrane component AMED_4791 PF13340 AMED_4791 AMED_4792 PF01547 Bacterial extracellular solute-binding protein AMED_4793 PF03621 MbtH-like protein AMED_4794 PF00501 AMP-binding enzyme AMED_4794 PF00550 Phosphopantetheine attachment site AMED_4794 PF13193 AMP-binding enzyme C-terminal domain AMED_4795 PF00291 Pyridoxal-phosphate dependent enzyme AMED_4796 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMED_4797 PF02310 B12 binding domain AMED_4798 PF06368 Methylaspartate mutase E chain (MutE) AMED_4799 PF01177 Asp/Glu/Hydantoin racemase AMED_4800 PF00501 AMP-binding enzyme AMED_4800 PF00550 Phosphopantetheine attachment site AMED_4800 PF00668 Condensation domain AMED_4800 PF00975 Thioesterase domain AMED_4800 PF13193 AMP-binding enzyme C-terminal domain AMED_4800 PF13745 HxxPF-repeated domain AMED_4801 PF04738 AMED_4801 AMED_4802 PF05977 Transmembrane secretion effector AMED_4803 PF02655 ATP-grasp domain AMED_4804 PF00501 AMP-binding enzyme AMED_4804 PF00550 Phosphopantetheine attachment site AMED_4804 PF00668 Condensation domain AMED_4804 PF13193 AMP-binding enzyme C-terminal domain AMED_4805 PF03704 Bacterial transcriptional activator domain AMED_4807 PF00486 Transcriptional regulatory protein, C terminal AMED_4807 PF00931 NB-ARC domain AMED_4807 PF03704 Bacterial transcriptional activator domain AMED_4807 PF13424 Tetratricopeptide repeat AMED_4808 PF12680 SnoaL-like domain AMED_4809 PF13411 MerR HTH family regulatory protein AMED_4809 PF13646 HEAT repeats AMED_4810 PF13646 HEAT repeats AMED_4813 PF01457 Leishmanolysin AMED_4816 PF10282 Lactonase, 7-bladed beta-propeller AMED_4817 PF00652 Ricin-type beta-trefoil lectin domain AMED_4817 PF03664 Glycosyl hydrolase family 62 AMED_4818 PF12697 Alpha/beta hydrolase family AMED_4819 PF00067 Cytochrome P450 AMED_4820 PF04672 S-adenosyl methyltransferase AMED_4821 PF12802 MarR family AMED_4822 PF12697 Alpha/beta hydrolase family AMED_4823 PF12706 Beta-lactamase superfamily domain AMED_4824 PF03992 Antibiotic biosynthesis monooxygenase AMED_4825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4825 PF07730 Histidine kinase AMED_4826 PF00072 Response regulator receiver domain AMED_4826 PF00196 Bacterial regulatory proteins, luxR family AMED_4827 PF00196 Bacterial regulatory proteins, luxR family AMED_4829 PF00092 von Willebrand factor type A domain AMED_4829 PF07676 WD40-like Beta Propeller Repeat AMED_4831 PF09684 AMED_4831 AMED_4832 PF04865 AMED_4832 AMED_4833 PF04965 Gene 25-like lysozyme AMED_4834 PF05488 PAAR motif AMED_4835 PF05954 Phage late control gene D protein (GPD) AMED_4836 PF01476 LysM domain AMED_4837 PF06841 AMED_4837 AMED_4841 PF06841 AMED_4841 AMED_4842 PF04984 Phage tail sheath protein AMED_4844 PF13699 AMED_4844 AMED_4845 PF00004 ATPase family associated with various cellular activities (AAA) AMED_4846 PF14065 AMED_4846 AMED_4848 PF13229 Right handed beta helix region AMED_4850 PF01979 Amidohydrolase family AMED_4851 PF01614 Bacterial transcriptional regulator AMED_4851 PF09339 IclR helix-turn-helix domain AMED_4852 PF02515 CoA-transferase family III AMED_4853 PF00285 Citrate synthase AMED_4854 PF00775 Dioxygenase AMED_4854 PF04444 Catechol dioxygenase N terminus AMED_4855 PF00107 Zinc-binding dehydrogenase AMED_4857 PF02627 Carboxymuconolactone decarboxylase family AMED_4858 PF00704 Glycosyl hydrolases family 18 AMED_4858 PF02018 Carbohydrate binding domain AMED_4859 PF02687 AMED_4859 AMED_4860 PF00005 ABC transporter AMED_4861 PF00005 ABC transporter AMED_4862 PF01494 FAD binding domain AMED_4863 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_4864 PF00106 short chain dehydrogenase AMED_4865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4865 PF03466 LysR substrate binding domain AMED_4866 PF00581 Rhodanese-like domain AMED_4867 PF02525 Flavodoxin-like fold AMED_4868 PF00440 Bacterial regulatory proteins, tetR family AMED_4869 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_4872 PF01037 AsnC family AMED_4872 PF13404 AsnC-type helix-turn-helix domain AMED_4873 PF00557 Metallopeptidase family M24 AMED_4873 PF01321 Creatinase/Prolidase N-terminal domain AMED_4874 PF01367 5'-3' exonuclease, C-terminal SAM fold AMED_4874 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMED_4875 PF13527 Acetyltransferase (GNAT) domain AMED_4875 PF13530 Sterol carrier protein domain AMED_4876 PF13527 Acetyltransferase (GNAT) domain AMED_4876 PF13530 Sterol carrier protein domain AMED_4877 PF14230 AMED_4877 AMED_4878 PF00270 DEAD/DEAH box helicase AMED_4878 PF00271 Helicase conserved C-terminal domain AMED_4878 PF08148 DSHCT (NUC185) domain AMED_4878 PF13234 rRNA-processing arch domain AMED_4880 PF00781 Diacylglycerol kinase catalytic domain AMED_4881 PF00902 Sec-independent protein translocase protein (TatC) AMED_4882 PF02416 mttA/Hcf106 family AMED_4884 PF13280 AMED_4884 AMED_4885 PF13280 AMED_4885 AMED_4886 PF01638 HxlR-like helix-turn-helix AMED_4887 PF13602 Zinc-binding dehydrogenase AMED_4888 PF00106 short chain dehydrogenase AMED_4890 PF03136 Pup-ligase protein AMED_4891 PF00781 Diacylglycerol kinase catalytic domain AMED_4891 PF01569 PAP2 superfamily AMED_4892 PF00756 Putative esterase AMED_4893 PF00227 Proteasome subunit AMED_4894 PF00227 Proteasome subunit AMED_4895 PF05639 Pup-like protein AMED_4896 PF03136 Pup-ligase protein AMED_4897 PF00293 NUDIX domain AMED_4899 PF00248 Aldo/keto reductase family AMED_4901 PF12840 Helix-turn-helix domain AMED_4902 PF00296 Luciferase-like monooxygenase AMED_4903 PF12294 AMED_4903 AMED_4904 PF00892 EamA-like transporter family AMED_4905 PF00004 ATPase family associated with various cellular activities (AAA) AMED_4905 PF16450 AMED_4905 AMED_4908 PF00805 Pentapeptide repeats (8 copies) AMED_4909 PF08704 tRNA methyltransferase complex GCD14 subunit AMED_4909 PF14801 tRNA methyltransferase complex GCD14 subunit N-term AMED_4910 PF02163 Peptidase family M50 AMED_4911 PF12705 PD-(D/E)XK nuclease superfamily AMED_4912 PF13622 Thioesterase-like superfamily AMED_4913 PF13614 AAA domain AMED_4914 PF01634 ATP phosphoribosyltransferase AMED_4914 PF08029 HisG, C-terminal domain AMED_4915 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMED_4916 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMED_4916 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMED_4917 PF02805 Metal binding domain of Ada AMED_4917 PF06029 AlkA N-terminal domain AMED_4917 PF12833 Helix-turn-helix domain AMED_4918 PF13419 Haloacid dehalogenase-like hydrolase AMED_4919 PF00809 Pterin binding enzyme AMED_4919 PF02310 B12 binding domain AMED_4919 PF02574 Homocysteine S-methyltransferase AMED_4919 PF02607 B12 binding domain AMED_4919 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMED_4920 PF09754 PAC2 family AMED_4921 PF02126 Phosphotriesterase family AMED_4922 PF07336 Protein of unknown function (DUF1470) AMED_4922 PF11706 CGNR zinc finger AMED_4923 PF00149 Calcineurin-like phosphoesterase AMED_4925 PF00144 Beta-lactamase AMED_4926 PF07690 Major Facilitator Superfamily AMED_4927 PF12840 Helix-turn-helix domain AMED_4928 PF12802 MarR family AMED_4929 PF00005 ABC transporter AMED_4930 PF01406 tRNA synthetases class I (C) catalytic domain AMED_4931 PF00376 MerR family regulatory protein AMED_4931 PF07739 TipAS antibiotic-recognition domain AMED_4931 PF09278 MerR, DNA binding AMED_4932 PF01979 Amidohydrolase family AMED_4934 PF00158 Sigma-54 interaction domain AMED_4937 PF00762 Ferrochelatase AMED_4938 PF00440 Bacterial regulatory proteins, tetR family AMED_4938 PF13977 Bacterial transcriptional repressor AMED_4939 PF07690 Major Facilitator Superfamily AMED_4940 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_4941 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_4942 PF07690 Major Facilitator Superfamily AMED_4943 PF00072 Response regulator receiver domain AMED_4943 PF00486 Transcriptional regulatory protein, C terminal AMED_4944 PF00512 His Kinase A (phospho-acceptor) domain AMED_4944 PF00672 HAMP domain AMED_4944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_4945 PF16868 AMED_4945 AMED_4946 PF03061 Thioesterase superfamily AMED_4947 PF00588 SpoU rRNA Methylase family AMED_4949 PF07584 AMED_4949 AMED_4949 PF13519 von Willebrand factor type A domain AMED_4950 PF01882 AMED_4950 AMED_4951 PF07726 ATPase family associated with various cellular activities (AAA) AMED_4952 PF12804 MobA-like NTP transferase domain AMED_4953 PF13649 Methyltransferase domain AMED_4954 PF00877 NlpC/P60 family AMED_4955 PF00330 Aconitase family (aconitate hydratase) AMED_4955 PF00694 Aconitase C-terminal domain AMED_4956 PF02308 AMED_4956 AMED_4957 PF00561 alpha/beta hydrolase fold AMED_4958 PF00440 Bacterial regulatory proteins, tetR family AMED_4959 PF00561 alpha/beta hydrolase fold AMED_4959 PF08386 TAP-like protein AMED_4960 PF04075 Domain of unknown function (DUF385) AMED_4961 PF10017 AMED_4961 AMED_4962 PF13522 Glutamine amidotransferase domain AMED_4963 PF03781 Sulfatase-modifying factor enzyme 1 AMED_4963 PF12867 DinB superfamily AMED_4964 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_4965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_4965 PF03466 LysR substrate binding domain AMED_4966 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMED_4966 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMED_4967 PF00561 alpha/beta hydrolase fold AMED_4968 PF14011 EspG family AMED_4970 PF12079 AMED_4970 AMED_4972 PF00440 Bacterial regulatory proteins, tetR family AMED_4973 PF00571 CBS domain AMED_4973 PF01595 AMED_4973 AMED_4973 PF03471 Transporter associated domain AMED_4974 PF00571 CBS domain AMED_4974 PF01595 AMED_4974 AMED_4977 PF00248 Aldo/keto reductase family AMED_4978 PF13560 Helix-turn-helix domain AMED_4979 PF12680 SnoaL-like domain AMED_4980 PF01370 NAD dependent epimerase/dehydratase family AMED_4981 PF00535 Glycosyl transferase family 2 AMED_4982 PF01370 NAD dependent epimerase/dehydratase family AMED_4983 PF02347 Glycine cleavage system P-protein AMED_4984 PF13411 MerR HTH family regulatory protein AMED_4985 PF00440 Bacterial regulatory proteins, tetR family AMED_4986 PF00085 Thioredoxin AMED_4987 PF13411 MerR HTH family regulatory protein AMED_4988 PF02577 Bifunctional nuclease AMED_4989 PF00376 MerR family regulatory protein AMED_4990 PF00498 FHA domain AMED_4991 PF01597 Glycine cleavage H-protein AMED_4992 PF01066 CDP-alcohol phosphatidyltransferase AMED_4996 PF00501 AMP-binding enzyme AMED_4996 PF13193 AMP-binding enzyme C-terminal domain AMED_4997 PF00378 Enoyl-CoA hydratase/isomerase family AMED_4998 PF00561 alpha/beta hydrolase fold AMED_4999 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_4999 PF13241 Putative NAD(P)-binding AMED_5000 PF13203 AMED_5000 AMED_5001 PF07728 AAA domain (dynein-related subfamily) AMED_5002 PF00253 Ribosomal protein S14p/S29e AMED_5003 PF00471 Ribosomal protein L33 AMED_5005 PF01197 Ribosomal protein L31 AMED_5006 PF01783 Ribosomal L32p protein family AMED_5008 PF01047 MarR family AMED_5009 PF07690 Major Facilitator Superfamily AMED_5010 PF01738 Dienelactone hydrolase family AMED_5012 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMED_5013 PF13347 MFS/sugar transport protein AMED_5014 PF00296 Luciferase-like monooxygenase AMED_5015 PF09995 AMED_5015 AMED_5016 PF00440 Bacterial regulatory proteins, tetR family AMED_5017 PF01614 Bacterial transcriptional regulator AMED_5017 PF09339 IclR helix-turn-helix domain AMED_5019 PF14344 AMED_5019 AMED_5020 PF04203 Sortase family AMED_5021 PF00296 Luciferase-like monooxygenase AMED_5022 PF09084 NMT1/THI5 like AMED_5023 PF00005 ABC transporter AMED_5024 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5025 PF00753 Metallo-beta-lactamase superfamily AMED_5026 PF01409 tRNA synthetases class II core domain (F) AMED_5026 PF03147 Ferredoxin-fold anticodon binding domain AMED_5027 PF04978 Protein of unknown function (DUF664) AMED_5029 PF00005 ABC transporter AMED_5029 PF00664 ABC transporter transmembrane region AMED_5030 PF00005 ABC transporter AMED_5030 PF00664 ABC transporter transmembrane region AMED_5031 PF03621 MbtH-like protein AMED_5032 PF01497 Periplasmic binding protein AMED_5033 PF02261 Aspartate decarboxylase AMED_5034 PF00501 AMP-binding enzyme AMED_5034 PF00550 Phosphopantetheine attachment site AMED_5034 PF00668 Condensation domain AMED_5034 PF08241 Methyltransferase domain AMED_5034 PF08242 Methyltransferase domain AMED_5034 PF13193 AMP-binding enzyme C-terminal domain AMED_5034 PF13745 HxxPF-repeated domain AMED_5035 PF01032 FecCD transport family AMED_5036 PF01032 FecCD transport family AMED_5037 PF00005 ABC transporter AMED_5038 PF04978 Protein of unknown function (DUF664) AMED_5039 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AMED_5040 PF00551 Formyl transferase AMED_5040 PF02911 Formyl transferase, C-terminal domain AMED_5042 PF02065 Melibiase AMED_5042 PF16874 AMED_5042 AMED_5042 PF16875 AMED_5042 AMED_5043 PF13416 Bacterial extracellular solute-binding protein AMED_5044 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5045 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5046 PF00005 ABC transporter AMED_5047 PF07848 PaaX-like protein AMED_5047 PF08223 PaaX-like protein C-terminal domain AMED_5048 PF00378 Enoyl-CoA hydratase/isomerase family AMED_5049 PF00041 Fibronectin type III domain AMED_5049 PF00553 Cellulose binding domain AMED_5049 PF00704 Glycosyl hydrolases family 18 AMED_5050 PF00589 Phage integrase family AMED_5051 PF01527 Transposase AMED_5052 PF00665 Integrase core domain AMED_5052 PF13276 AMED_5052 AMED_5053 PF00931 NB-ARC domain AMED_5053 PF13271 AMED_5053 AMED_5054 PF13340 AMED_5054 AMED_5055 PF13374 Tetratricopeptide repeat AMED_5055 PF13424 Tetratricopeptide repeat AMED_5056 PF13374 Tetratricopeptide repeat AMED_5056 PF13424 Tetratricopeptide repeat AMED_5057 PF00589 Phage integrase family AMED_5057 PF01695 IstB-like ATP binding protein AMED_5060 PF00656 Caspase domain AMED_5062 PF00149 Calcineurin-like phosphoesterase AMED_5062 PF16656 AMED_5062 AMED_5063 PF00722 Glycosyl hydrolases family 16 AMED_5064 PF00331 Glycosyl hydrolase family 10 AMED_5065 PF00480 ROK family AMED_5065 PF12802 MarR family AMED_5066 PF00728 Glycosyl hydrolase family 20, catalytic domain AMED_5066 PF02838 Glycosyl hydrolase family 20, domain 2 AMED_5067 PF00041 Fibronectin type III domain AMED_5067 PF00553 Cellulose binding domain AMED_5067 PF00703 Glycosyl hydrolases family 2 AMED_5068 PF00553 Cellulose binding domain AMED_5068 PF01270 Glycosyl hydrolases family 8 AMED_5069 PF01261 Xylose isomerase-like TIM barrel AMED_5070 PF01261 Xylose isomerase-like TIM barrel AMED_5071 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_5071 PF13378 Enolase C-terminal domain-like AMED_5072 PF00356 Bacterial regulatory proteins, lacI family AMED_5072 PF13377 Periplasmic binding protein-like domain AMED_5073 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_5073 PF13378 Enolase C-terminal domain-like AMED_5074 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5075 PF09084 NMT1/THI5 like AMED_5076 PF00005 ABC transporter AMED_5077 PF00512 His Kinase A (phospho-acceptor) domain AMED_5077 PF00672 HAMP domain AMED_5077 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5078 PF00072 Response regulator receiver domain AMED_5078 PF00486 Transcriptional regulatory protein, C terminal AMED_5079 PF09362 AMED_5079 AMED_5081 PF13463 Winged helix DNA-binding domain AMED_5082 PF00561 alpha/beta hydrolase fold AMED_5083 PF07690 Major Facilitator Superfamily AMED_5084 PF01047 MarR family AMED_5085 PF00230 Major intrinsic protein AMED_5087 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_5087 PF00355 Rieske [2Fe-2S] domain AMED_5087 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_5087 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_5088 PF00326 Prolyl oligopeptidase family AMED_5089 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_5090 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_5090 PF10370 Domain of unknown function (DUF2437) AMED_5091 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_5092 PF01494 FAD binding domain AMED_5093 PF04199 Putative cyclase AMED_5094 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_5094 PF03466 LysR substrate binding domain AMED_5095 PF07690 Major Facilitator Superfamily AMED_5096 PF00005 ABC transporter AMED_5097 PF02653 AMED_5097 AMED_5098 PF13407 Periplasmic binding protein domain AMED_5099 PF04542 Sigma-70 region 2 AMED_5099 PF08281 Sigma-70, region 4 AMED_5100 PF00082 Subtilase family AMED_5100 PF09286 Pro-kumamolisin, activation domain AMED_5101 PF06689 ClpX C4-type zinc finger AMED_5103 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_5105 PF01183 Glycosyl hydrolases family 25 AMED_5106 PF04055 Radical SAM superfamily AMED_5107 PF00534 Glycosyl transferases group 1 AMED_5107 PF00535 Glycosyl transferase family 2 AMED_5109 PF05592 Bacterial alpha-L-rhamnosidase AMED_5109 PF08531 Alpha-L-rhamnosidase N-terminal domain AMED_5109 PF13364 Beta-galactosidase jelly roll domain AMED_5110 PF00067 Cytochrome P450 AMED_5112 PF00999 Sodium/hydrogen exchanger family AMED_5113 PF05532 CsbD-like AMED_5114 PF00106 short chain dehydrogenase AMED_5115 PF13560 Helix-turn-helix domain AMED_5116 PF00009 Elongation factor Tu GTP binding domain AMED_5116 PF09107 Elongation factor SelB, winged helix AMED_5117 PF03841 L-seryl-tRNA selenium transferase AMED_5117 PF12390 AMED_5117 AMED_5118 PF00586 AIR synthase related protein, N-terminal domain AMED_5118 PF02769 AIR synthase related protein, C-terminal domain AMED_5119 PF11387 AMED_5119 AMED_5121 PF00857 Isochorismatase family AMED_5122 PF13354 Beta-lactamase enzyme family AMED_5123 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_5124 PF13354 Beta-lactamase enzyme family AMED_5125 PF02525 Flavodoxin-like fold AMED_5127 PF13556 PucR C-terminal helix-turn-helix domain AMED_5128 PF12697 Alpha/beta hydrolase family AMED_5129 PF01494 FAD binding domain AMED_5130 PF00440 Bacterial regulatory proteins, tetR family AMED_5130 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_5131 PF07681 AMED_5131 AMED_5132 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_5134 PF08291 Peptidase M15 AMED_5135 PF12697 Alpha/beta hydrolase family AMED_5136 PF00440 Bacterial regulatory proteins, tetR family AMED_5137 PF01872 RibD C-terminal domain AMED_5138 PF00089 Trypsin AMED_5138 PF02983 Alpha-lytic protease prodomain AMED_5141 PF14013 AMED_5141 AMED_5142 PF04892 AMED_5142 AMED_5142 PF06271 AMED_5142 AMED_5144 PF13581 Histidine kinase-like ATPase domain AMED_5146 PF03176 MMPL family AMED_5147 PF12802 MarR family AMED_5149 PF14273 AMED_5149 AMED_5150 PF01564 Spermine/spermidine synthase AMED_5151 PF02675 S-adenosylmethionine decarboxylase AMED_5152 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_5152 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_5153 PF08760 AMED_5153 AMED_5153 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_5153 PF16334 AMED_5153 AMED_5153 PF16335 AMED_5153 AMED_5153 PF17168 AMED_5153 AMED_5155 PF08980 Domain of unknown function (DUF1883) AMED_5156 PF01047 MarR family AMED_5159 PF14216 AMED_5159 AMED_5160 PF13466 STAS domain AMED_5161 PF00072 Response regulator receiver domain AMED_5162 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5162 PF07730 Histidine kinase AMED_5162 PF13426 PAS domain AMED_5164 PF00072 Response regulator receiver domain AMED_5164 PF00196 Bacterial regulatory proteins, luxR family AMED_5166 PF03737 Demethylmenaquinone methyltransferase AMED_5167 PF03091 CutA1 divalent ion tolerance protein AMED_5168 PF00012 Hsp70 protein AMED_5170 PF01926 50S ribosome-binding GTPase AMED_5171 PF00350 Dynamin family AMED_5173 PF00196 Bacterial regulatory proteins, luxR family AMED_5173 PF13191 AAA ATPase domain AMED_5175 PF01494 FAD binding domain AMED_5176 PF00809 Pterin binding enzyme AMED_5176 PF02310 B12 binding domain AMED_5176 PF02574 Homocysteine S-methyltransferase AMED_5176 PF02607 B12 binding domain AMED_5176 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMED_5177 PF00296 Luciferase-like monooxygenase AMED_5178 PF00083 Sugar (and other) transporter AMED_5179 PF00553 Cellulose binding domain AMED_5180 PF00107 Zinc-binding dehydrogenase AMED_5180 PF08240 Alcohol dehydrogenase GroES-like domain AMED_5182 PF02627 Carboxymuconolactone decarboxylase family AMED_5183 PF03756 AMED_5183 AMED_5185 PF00553 Cellulose binding domain AMED_5186 PF00248 Aldo/keto reductase family AMED_5187 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) AMED_5188 PF00553 Cellulose binding domain AMED_5188 PF03067 Chitin binding domain AMED_5189 PF00356 Bacterial regulatory proteins, lacI family AMED_5189 PF13377 Periplasmic binding protein-like domain AMED_5190 PF13416 Bacterial extracellular solute-binding protein AMED_5191 PF00553 Cellulose binding domain AMED_5191 PF01341 Glycosyl hydrolases family 6 AMED_5192 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_5192 PF00553 Cellulose binding domain AMED_5193 PF00553 Cellulose binding domain AMED_5193 PF02011 Glycosyl hydrolase family 48 AMED_5194 PF00356 Bacterial regulatory proteins, lacI family AMED_5194 PF13377 Periplasmic binding protein-like domain AMED_5195 PF13416 Bacterial extracellular solute-binding protein AMED_5196 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5197 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5198 PF00232 Glycosyl hydrolase family 1 AMED_5199 PF00920 Dehydratase family AMED_5200 PF11239 AMED_5200 AMED_5201 PF00571 CBS domain AMED_5202 PF03167 Uracil DNA glycosylase superfamily AMED_5204 PF01068 ATP dependent DNA ligase domain AMED_5204 PF04679 ATP dependent DNA ligase C terminal region AMED_5205 PF02735 Ku70/Ku80 beta-barrel domain AMED_5208 PF03861 ANTAR domain AMED_5208 PF13185 GAF domain AMED_5209 PF13466 STAS domain AMED_5210 PF00296 Luciferase-like monooxygenase AMED_5213 PF04539 Sigma-70 region 3 AMED_5213 PF04542 Sigma-70 region 2 AMED_5213 PF04545 Sigma-70, region 4 AMED_5214 PF01928 CYTH domain AMED_5214 PF05235 CHAD domain AMED_5216 PF03861 ANTAR domain AMED_5216 PF13185 GAF domain AMED_5218 PF03364 Polyketide cyclase / dehydrase and lipid transport AMED_5219 PF07332 AMED_5219 AMED_5220 PF12277 AMED_5220 AMED_5221 PF14019 AMED_5221 AMED_5222 PF01740 STAS domain AMED_5223 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_5225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_5225 PF03466 LysR substrate binding domain AMED_5226 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_5226 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_5227 PF13231 AMED_5227 AMED_5228 PF01120 Alpha-L-fucosidase AMED_5228 PF16757 AMED_5228 AMED_5230 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_5231 PF00083 Sugar (and other) transporter AMED_5231 PF07690 Major Facilitator Superfamily AMED_5232 PF13302 Acetyltransferase (GNAT) domain AMED_5234 PF03527 AMED_5234 AMED_5234 PF05593 AMED_5234 AMED_5235 PF02575 YbaB/EbfC DNA-binding family AMED_5236 PF10824 Protein of unknown function (DUF2580) AMED_5239 PF14011 EspG family AMED_5240 PF01844 HNH endonuclease AMED_5240 PF02720 AMED_5240 AMED_5241 PF03050 AMED_5241 AMED_5243 PF01613 Flavin reductase like domain AMED_5244 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_5244 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_5245 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_5245 PF01799 [2Fe-2S] binding domain AMED_5246 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_5246 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_5247 PF01925 AMED_5247 AMED_5248 PF01872 RibD C-terminal domain AMED_5249 PF00754 F5/8 type C domain AMED_5250 PF00356 Bacterial regulatory proteins, lacI family AMED_5250 PF13377 Periplasmic binding protein-like domain AMED_5251 PF00754 F5/8 type C domain AMED_5251 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_5251 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_5251 PF14310 Fibronectin type III-like domain AMED_5252 PF00722 Glycosyl hydrolases family 16 AMED_5252 PF00754 F5/8 type C domain AMED_5253 PF00754 F5/8 type C domain AMED_5254 PF00753 Metallo-beta-lactamase superfamily AMED_5255 PF01047 MarR family AMED_5256 PF00925 GTP cyclohydrolase II AMED_5257 PF01717 Cobalamin-independent synthase, Catalytic domain AMED_5258 PF11239 AMED_5258 AMED_5259 PF00817 impB/mucB/samB family AMED_5259 PF11799 impB/mucB/samB family C-terminal domain AMED_5260 PF00440 Bacterial regulatory proteins, tetR family AMED_5261 PF11583 P-aminobenzoate N-oxygenase AurF AMED_5262 PF00583 Acetyltransferase (GNAT) family AMED_5263 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMED_5263 PF05221 S-adenosyl-L-homocysteine hydrolase AMED_5266 PF02735 Ku70/Ku80 beta-barrel domain AMED_5268 PF03029 Conserved hypothetical ATP binding protein AMED_5269 PF05331 AMED_5269 AMED_5270 PF03259 Roadblock/LC7 domain AMED_5271 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5272 PF00440 Bacterial regulatory proteins, tetR family AMED_5273 PF00005 ABC transporter AMED_5273 PF00664 ABC transporter transmembrane region AMED_5274 PF00005 ABC transporter AMED_5274 PF00664 ABC transporter transmembrane region AMED_5275 PF01068 ATP dependent DNA ligase domain AMED_5275 PF13298 DNA polymerase Ligase (LigD) AMED_5276 PF03779 AMED_5276 AMED_5278 PF00486 Transcriptional regulatory protein, C terminal AMED_5278 PF00931 NB-ARC domain AMED_5278 PF03704 Bacterial transcriptional activator domain AMED_5279 PF01965 DJ-1/PfpI family AMED_5280 PF01965 DJ-1/PfpI family AMED_5280 PF12833 Helix-turn-helix domain AMED_5281 PF07907 AMED_5281 AMED_5283 PF00753 Metallo-beta-lactamase superfamily AMED_5284 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMED_5287 PF00378 Enoyl-CoA hydratase/isomerase family AMED_5288 PF00561 alpha/beta hydrolase fold AMED_5289 PF00196 Bacterial regulatory proteins, luxR family AMED_5290 PF07883 Cupin domain AMED_5291 PF06993 AMED_5291 AMED_5292 PF12802 MarR family AMED_5293 PF01979 Amidohydrolase family AMED_5294 PF02824 TGS domain AMED_5294 PF04607 Region found in RelA / SpoT proteins AMED_5294 PF13291 ACT domain AMED_5294 PF13328 HD domain AMED_5296 PF02355 Protein export membrane protein AMED_5296 PF07549 SecD/SecF GG Motif AMED_5297 PF02355 Protein export membrane protein AMED_5297 PF07549 SecD/SecF GG Motif AMED_5298 PF02699 Preprotein translocase subunit AMED_5299 PF05491 Holliday junction DNA helicase ruvB C-terminus AMED_5299 PF05496 Holliday junction DNA helicase ruvB N-terminus AMED_5300 PF01330 RuvA N terminal domain AMED_5300 PF07499 RuvA, C-terminal domain AMED_5300 PF14520 Helix-hairpin-helix domain AMED_5301 PF02075 Crossover junction endodeoxyribonuclease RuvC AMED_5302 PF06172 Cupin superfamily (DUF985) AMED_5303 PF14081 AMED_5303 AMED_5304 PF01709 Transcriptional regulator AMED_5305 PF01174 SNO glutamine amidotransferase family AMED_5306 PF05437 AMED_5306 AMED_5307 PF03591 AMED_5307 AMED_5308 PF01381 Helix-turn-helix AMED_5309 PF01494 FAD binding domain AMED_5310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_5310 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_5310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_5311 PF00501 AMP-binding enzyme AMED_5311 PF00668 Condensation domain AMED_5311 PF13193 AMP-binding enzyme C-terminal domain AMED_5312 PF00550 Phosphopantetheine attachment site AMED_5313 PF00975 Thioesterase domain AMED_5314 PF01680 SOR/SNZ family AMED_5315 PF01022 Bacterial regulatory protein, arsR family AMED_5316 PF01565 FAD binding domain AMED_5316 PF08031 Berberine and berberine like AMED_5317 PF00009 Elongation factor Tu GTP binding domain AMED_5317 PF00679 Elongation factor G C-terminus AMED_5317 PF03144 Elongation factor Tu domain 2 AMED_5317 PF03764 Elongation factor G, domain IV AMED_5317 PF14492 Elongation Factor G, domain II AMED_5318 PF13478 XdhC Rossmann domain AMED_5322 PF13439 Glycosyltransferase Family 4 AMED_5322 PF13692 Glycosyl transferases group 1 AMED_5323 PF03279 AMED_5323 AMED_5324 PF01066 CDP-alcohol phosphatidyltransferase AMED_5325 PF12802 MarR family AMED_5326 PF01230 HIT domain AMED_5327 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMED_5327 PF03129 Anticodon binding domain AMED_5327 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMED_5328 PF00881 Nitroreductase family AMED_5329 PF02397 AMED_5329 AMED_5330 PF04686 Streptomyces sporulation and cell division protein, SsgA AMED_5331 PF00589 Phage integrase family AMED_5331 PF14659 Phage integrase, N-terminal SAM-like domain AMED_5332 PF13180 PDZ domain AMED_5332 PF13365 Trypsin-like peptidase domain AMED_5333 PF01434 Peptidase family M41 AMED_5334 PF03773 AMED_5334 AMED_5336 PF05787 Bacterial protein of unknown function (DUF839) AMED_5337 PF00440 Bacterial regulatory proteins, tetR family AMED_5338 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_5339 PF00378 Enoyl-CoA hydratase/isomerase family AMED_5340 PF00501 AMP-binding enzyme AMED_5340 PF13193 AMP-binding enzyme C-terminal domain AMED_5341 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_5341 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_5343 PF01546 Peptidase family M20/M25/M40 AMED_5343 PF07687 Peptidase dimerisation domain AMED_5344 PF01037 AsnC family AMED_5344 PF13404 AsnC-type helix-turn-helix domain AMED_5345 PF12802 MarR family AMED_5346 PF01979 Amidohydrolase family AMED_5348 PF04542 Sigma-70 region 2 AMED_5348 PF08281 Sigma-70, region 4 AMED_5349 PF05199 GMC oxidoreductase AMED_5351 PF01494 FAD binding domain AMED_5352 PF13564 AMED_5352 AMED_5353 PF00501 AMP-binding enzyme AMED_5353 PF13193 AMP-binding enzyme C-terminal domain AMED_5354 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_5355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_5356 PF00440 Bacterial regulatory proteins, tetR family AMED_5357 PF06210 AMED_5357 AMED_5358 PF00440 Bacterial regulatory proteins, tetR family AMED_5360 PF00781 Diacylglycerol kinase catalytic domain AMED_5362 PF00795 Carbon-nitrogen hydrolase AMED_5363 PF13229 Right handed beta helix region AMED_5364 PF04616 Glycosyl hydrolases family 43 AMED_5365 PF10022 AMED_5365 AMED_5366 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_5366 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_5367 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5368 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5369 PF01547 Bacterial extracellular solute-binding protein AMED_5370 PF08220 DeoR-like helix-turn-helix domain AMED_5370 PF13377 Periplasmic binding protein-like domain AMED_5371 PF00743 Flavin-binding monooxygenase-like AMED_5371 PF13450 NAD(P)-binding Rossmann-like domain AMED_5372 PF08450 SMP-30/Gluconolaconase/LRE-like region AMED_5373 PF07690 Major Facilitator Superfamily AMED_5374 PF00106 short chain dehydrogenase AMED_5375 PF00106 short chain dehydrogenase AMED_5376 PF00440 Bacterial regulatory proteins, tetR family AMED_5377 PF00440 Bacterial regulatory proteins, tetR family AMED_5377 PF16859 AMED_5377 AMED_5379 PF00656 Caspase domain AMED_5380 PF10503 Esterase PHB depolymerase AMED_5381 PF14330 AMED_5381 AMED_5382 PF07287 AMED_5382 AMED_5383 PF07690 Major Facilitator Superfamily AMED_5384 PF00392 Bacterial regulatory proteins, gntR family AMED_5384 PF07729 FCD domain AMED_5385 PF09234 Domain of unknown function (DUF1963) AMED_5388 PF00583 Acetyltransferase (GNAT) family AMED_5391 PF05593 AMED_5391 AMED_5392 PF00732 GMC oxidoreductase AMED_5392 PF05199 GMC oxidoreductase AMED_5393 PF00483 Nucleotidyl transferase AMED_5394 PF00501 AMP-binding enzyme AMED_5394 PF00550 Phosphopantetheine attachment site AMED_5394 PF13193 AMP-binding enzyme C-terminal domain AMED_5395 PF00975 Thioesterase domain AMED_5396 PF00550 Phosphopantetheine attachment site AMED_5396 PF00668 Condensation domain AMED_5397 PF00960 Neocarzinostatin family AMED_5398 PF04101 Glycosyltransferase family 28 C-terminal domain AMED_5398 PF06722 Protein of unknown function (DUF1205) AMED_5401 PF00891 O-methyltransferase AMED_5402 PF03559 NDP-hexose 2,3-dehydratase AMED_5403 PF00072 Response regulator receiver domain AMED_5403 PF00196 Bacterial regulatory proteins, luxR family AMED_5404 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5404 PF07730 Histidine kinase AMED_5405 PF01061 AMED_5405 AMED_5406 PF00005 ABC transporter AMED_5407 PF01370 NAD dependent epimerase/dehydratase family AMED_5409 PF00501 AMP-binding enzyme AMED_5409 PF00550 Phosphopantetheine attachment site AMED_5409 PF00668 Condensation domain AMED_5410 PF04101 Glycosyltransferase family 28 C-terminal domain AMED_5410 PF06722 Protein of unknown function (DUF1205) AMED_5411 PF04101 Glycosyltransferase family 28 C-terminal domain AMED_5411 PF06722 Protein of unknown function (DUF1205) AMED_5412 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMED_5412 PF06722 Protein of unknown function (DUF1205) AMED_5413 PF06722 Protein of unknown function (DUF1205) AMED_5414 PF06722 Protein of unknown function (DUF1205) AMED_5415 PF01061 AMED_5415 AMED_5416 PF00005 ABC transporter AMED_5417 PF08241 Methyltransferase domain AMED_5418 PF06722 Protein of unknown function (DUF1205) AMED_5419 PF06722 Protein of unknown function (DUF1205) AMED_5420 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMED_5421 PF00486 Transcriptional regulatory protein, C terminal AMED_5421 PF00931 NB-ARC domain AMED_5421 PF03704 Bacterial transcriptional activator domain AMED_5422 PF04101 Glycosyltransferase family 28 C-terminal domain AMED_5422 PF06722 Protein of unknown function (DUF1205) AMED_5423 PF00391 PEP-utilising enzyme, mobile domain AMED_5423 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMED_5424 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_5424 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_5425 PF04486 AMED_5425 AMED_5426 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_5427 PF08592 AMED_5427 AMED_5428 PF03992 Antibiotic biosynthesis monooxygenase AMED_5429 PF03992 Antibiotic biosynthesis monooxygenase AMED_5430 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_5431 PF08592 AMED_5431 AMED_5432 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_5433 PF00550 Phosphopantetheine attachment site AMED_5434 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_5434 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_5435 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_5435 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_5436 PF07883 Cupin domain AMED_5437 PF04673 Polyketide synthesis cyclase AMED_5438 PF03551 Transcriptional regulator PadR-like family AMED_5439 PF00854 POT family AMED_5440 PF00891 O-methyltransferase AMED_5440 PF16864 AMED_5440 AMED_5441 PF01494 FAD binding domain AMED_5442 PF01494 FAD binding domain AMED_5443 PF13350 Tyrosine phosphatase family AMED_5444 PF00296 Luciferase-like monooxygenase AMED_5445 PF00106 short chain dehydrogenase AMED_5446 PF00067 Cytochrome P450 AMED_5447 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_5448 PF13489 Methyltransferase domain AMED_5449 PF01370 NAD dependent epimerase/dehydratase family AMED_5450 PF01370 NAD dependent epimerase/dehydratase family AMED_5451 PF07676 WD40-like Beta Propeller Repeat AMED_5452 PF00652 Ricin-type beta-trefoil lectin domain AMED_5453 PF13424 Tetratricopeptide repeat AMED_5453 PF13560 Helix-turn-helix domain AMED_5454 PF05593 AMED_5454 AMED_5458 PF09851 AMED_5458 AMED_5459 PF12840 Helix-turn-helix domain AMED_5460 PF00916 AMED_5460 AMED_5460 PF01740 STAS domain AMED_5461 PF07681 AMED_5461 AMED_5462 PF00582 Universal stress protein family AMED_5464 PF00881 Nitroreductase family AMED_5465 PF00582 Universal stress protein family AMED_5466 PF00122 E1-E2 ATPase AMED_5466 PF00689 Cation transporting ATPase, C-terminus AMED_5466 PF00690 Cation transporter/ATPase, N-terminus AMED_5466 PF00702 haloacid dehalogenase-like hydrolase AMED_5469 PF00871 Acetokinase family AMED_5470 PF00583 Acetyltransferase (GNAT) family AMED_5470 PF13380 CoA binding domain AMED_5470 PF13549 ATP-grasp domain AMED_5470 PF13607 Succinyl-CoA ligase like flavodoxin domain AMED_5471 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5471 PF07730 Histidine kinase AMED_5471 PF13185 GAF domain AMED_5472 PF00881 Nitroreductase family AMED_5473 PF00072 Response regulator receiver domain AMED_5473 PF00196 Bacterial regulatory proteins, luxR family AMED_5474 PF01654 AMED_5474 AMED_5475 PF02322 AMED_5475 AMED_5476 PF00005 ABC transporter AMED_5476 PF00664 ABC transporter transmembrane region AMED_5477 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AMED_5477 PF09363 XFP C-terminal domain AMED_5477 PF09364 XFP N-terminal domain AMED_5478 PF00582 Universal stress protein family AMED_5479 PF00571 CBS domain AMED_5480 PF00582 Universal stress protein family AMED_5482 PF00571 CBS domain AMED_5482 PF04972 BON domain AMED_5483 PF00582 Universal stress protein family AMED_5489 PF12900 Pyridoxamine 5'-phosphate oxidase AMED_5491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5491 PF07730 Histidine kinase AMED_5492 PF00072 Response regulator receiver domain AMED_5492 PF00196 Bacterial regulatory proteins, luxR family AMED_5494 PF03861 ANTAR domain AMED_5494 PF13185 GAF domain AMED_5495 PF02517 CAAX protease self-immunity AMED_5497 PF00072 Response regulator receiver domain AMED_5498 PF07883 Cupin domain AMED_5499 PF00440 Bacterial regulatory proteins, tetR family AMED_5501 PF03033 Glycosyltransferase family 28 N-terminal domain AMED_5502 PF12802 MarR family AMED_5503 PF00753 Metallo-beta-lactamase superfamily AMED_5504 PF12680 SnoaL-like domain AMED_5505 PF07366 SnoaL-like polyketide cyclase AMED_5506 PF13343 Bacterial extracellular solute-binding protein AMED_5507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5507 PF07730 Histidine kinase AMED_5508 PF00072 Response regulator receiver domain AMED_5508 PF00196 Bacterial regulatory proteins, luxR family AMED_5510 PF13229 Right handed beta helix region AMED_5511 PF00392 Bacterial regulatory proteins, gntR family AMED_5513 PF13671 AAA domain AMED_5514 PF08386 TAP-like protein AMED_5515 PF00717 Peptidase S24-like AMED_5515 PF10502 Signal peptidase, peptidase S26 AMED_5516 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_5518 PF00300 Histidine phosphatase superfamily (branch 1) AMED_5520 PF01527 Transposase AMED_5521 PF00665 Integrase core domain AMED_5521 PF13276 AMED_5521 AMED_5522 PF03534 Salmonella virulence plasmid 65kDa B protein AMED_5522 PF05593 AMED_5522 AMED_5522 PF07591 Pretoxin HINT domain AMED_5523 PF13385 Concanavalin A-like lectin/glucanases superfamily AMED_5524 PF00067 Cytochrome P450 AMED_5525 PF01636 Phosphotransferase enzyme family AMED_5526 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_5528 PF00296 Luciferase-like monooxygenase AMED_5529 PF01019 Gamma-glutamyltranspeptidase AMED_5530 PF00990 GGDEF domain AMED_5532 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_5534 PF07690 Major Facilitator Superfamily AMED_5536 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_5536 PF00583 Acetyltransferase (GNAT) family AMED_5536 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_5537 PF13474 SnoaL-like domain AMED_5538 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_5539 PF00535 Glycosyl transferase family 2 AMED_5539 PF02709 N-terminal domain of galactosyltransferase AMED_5540 PF00535 Glycosyl transferase family 2 AMED_5541 PF00005 ABC transporter AMED_5542 PF00005 ABC transporter AMED_5543 PF10067 AMED_5543 AMED_5544 PF04672 S-adenosyl methyltransferase AMED_5546 PF06441 Epoxide hydrolase N terminus AMED_5547 PF07859 alpha/beta hydrolase fold AMED_5550 PF10824 Protein of unknown function (DUF2580) AMED_5551 PF02575 YbaB/EbfC DNA-binding family AMED_5552 PF00067 Cytochrome P450 AMED_5553 PF00067 Cytochrome P450 AMED_5554 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMED_5556 PF01614 Bacterial transcriptional regulator AMED_5556 PF09339 IclR helix-turn-helix domain AMED_5557 PF00083 Sugar (and other) transporter AMED_5559 PF00931 NB-ARC domain AMED_5559 PF13424 Tetratricopeptide repeat AMED_5560 PF03551 Transcriptional regulator PadR-like family AMED_5562 PF03861 ANTAR domain AMED_5565 PF00704 Glycosyl hydrolases family 18 AMED_5567 PF12802 MarR family AMED_5568 PF03358 NADPH-dependent FMN reductase AMED_5569 PF04909 Amidohydrolase AMED_5571 PF01590 GAF domain AMED_5571 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5571 PF07730 Histidine kinase AMED_5571 PF13185 GAF domain AMED_5573 PF00072 Response regulator receiver domain AMED_5573 PF00196 Bacterial regulatory proteins, luxR family AMED_5574 PF04972 BON domain AMED_5575 PF01145 SPFH domain / Band 7 family AMED_5576 PF00583 Acetyltransferase (GNAT) family AMED_5578 PF00156 Phosphoribosyl transferase domain AMED_5579 PF03861 ANTAR domain AMED_5579 PF13185 GAF domain AMED_5580 PF03861 ANTAR domain AMED_5580 PF13185 GAF domain AMED_5584 PF00487 AMED_5584 AMED_5588 PF01594 AMED_5588 AMED_5589 PF13466 STAS domain AMED_5592 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_5595 PF09363 XFP C-terminal domain AMED_5596 PF01734 Patatin-like phospholipase AMED_5597 PF04909 Amidohydrolase AMED_5598 PF00440 Bacterial regulatory proteins, tetR family AMED_5599 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_5599 PF14498 Glycosyl hydrolase family 65, N-terminal domain AMED_5600 PF08044 AMED_5600 AMED_5601 PF00072 Response regulator receiver domain AMED_5601 PF00486 Transcriptional regulatory protein, C terminal AMED_5602 PF00512 His Kinase A (phospho-acceptor) domain AMED_5602 PF00672 HAMP domain AMED_5602 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5603 PF06197 AMED_5603 AMED_5604 PF00534 Glycosyl transferases group 1 AMED_5604 PF13439 Glycosyltransferase Family 4 AMED_5605 PF03682 AMED_5605 AMED_5609 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_5610 PF00440 Bacterial regulatory proteins, tetR family AMED_5612 PF04542 Sigma-70 region 2 AMED_5613 PF12840 Helix-turn-helix domain AMED_5614 PF13419 Haloacid dehalogenase-like hydrolase AMED_5616 PF00703 Glycosyl hydrolases family 2 AMED_5616 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_5616 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_5616 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_5617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_5617 PF03466 LysR substrate binding domain AMED_5618 PF00106 short chain dehydrogenase AMED_5619 PF03807 NADP oxidoreductase coenzyme F420-dependent AMED_5622 PF00440 Bacterial regulatory proteins, tetR family AMED_5623 PF00106 short chain dehydrogenase AMED_5624 PF00069 Protein kinase domain AMED_5624 PF00553 Cellulose binding domain AMED_5625 PF04542 Sigma-70 region 2 AMED_5625 PF08281 Sigma-70, region 4 AMED_5628 PF00067 Cytochrome P450 AMED_5629 PF14099 Polysaccharide lyase AMED_5630 PF00067 Cytochrome P450 AMED_5632 PF01494 FAD binding domain AMED_5633 PF12802 MarR family AMED_5635 PF06441 Epoxide hydrolase N terminus AMED_5636 PF06441 Epoxide hydrolase N terminus AMED_5637 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_5638 PF00156 Phosphoribosyl transferase domain AMED_5639 PF12697 Alpha/beta hydrolase family AMED_5640 PF00196 Bacterial regulatory proteins, luxR family AMED_5640 PF13191 AAA ATPase domain AMED_5641 PF00196 Bacterial regulatory proteins, luxR family AMED_5641 PF13191 AAA ATPase domain AMED_5642 PF00106 short chain dehydrogenase AMED_5647 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_5648 PF07690 Major Facilitator Superfamily AMED_5649 PF00440 Bacterial regulatory proteins, tetR family AMED_5651 PF00196 Bacterial regulatory proteins, luxR family AMED_5653 PF05685 Putative restriction endonuclease AMED_5654 PF00005 ABC transporter AMED_5655 PF04203 Sortase family AMED_5659 PF16640 AMED_5659 AMED_5662 PF12849 PBP superfamily domain AMED_5663 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5664 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5665 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMED_5666 PF00512 His Kinase A (phospho-acceptor) domain AMED_5666 PF00672 HAMP domain AMED_5666 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5667 PF00072 Response regulator receiver domain AMED_5667 PF00486 Transcriptional regulatory protein, C terminal AMED_5668 PF00535 Glycosyl transferase family 2 AMED_5668 PF04138 AMED_5668 AMED_5669 PF13231 AMED_5669 AMED_5670 PF00440 Bacterial regulatory proteins, tetR family AMED_5671 PF07690 Major Facilitator Superfamily AMED_5672 PF01494 FAD binding domain AMED_5673 PF00440 Bacterial regulatory proteins, tetR family AMED_5675 PF13377 Periplasmic binding protein-like domain AMED_5676 PF00440 Bacterial regulatory proteins, tetR family AMED_5677 PF00440 Bacterial regulatory proteins, tetR family AMED_5678 PF13546 AMED_5678 AMED_5679 PF12697 Alpha/beta hydrolase family AMED_5680 PF00440 Bacterial regulatory proteins, tetR family AMED_5681 PF06772 AMED_5681 AMED_5682 PF00561 alpha/beta hydrolase fold AMED_5682 PF08386 TAP-like protein AMED_5683 PF13340 AMED_5683 AMED_5684 PF01609 Transposase DDE domain AMED_5687 PF03795 YCII-related domain AMED_5688 PF04542 Sigma-70 region 2 AMED_5692 PF00857 Isochorismatase family AMED_5693 PF05368 NmrA-like family AMED_5694 PF00561 alpha/beta hydrolase fold AMED_5694 PF08386 TAP-like protein AMED_5696 PF03992 Antibiotic biosynthesis monooxygenase AMED_5697 PF01494 FAD binding domain AMED_5698 PF00440 Bacterial regulatory proteins, tetR family AMED_5699 PF12680 SnoaL-like domain AMED_5700 PF07883 Cupin domain AMED_5701 PF00743 Flavin-binding monooxygenase-like AMED_5702 PF01614 Bacterial transcriptional regulator AMED_5702 PF09339 IclR helix-turn-helix domain AMED_5703 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_5704 PF07883 Cupin domain AMED_5705 PF00561 alpha/beta hydrolase fold AMED_5706 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMED_5707 PF00313 'Cold-shock' DNA-binding domain AMED_5708 PF00440 Bacterial regulatory proteins, tetR family AMED_5709 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_5710 PF00106 short chain dehydrogenase AMED_5712 PF03795 YCII-related domain AMED_5713 PF04993 TfoX N-terminal domain AMED_5714 PF00703 Glycosyl hydrolases family 2 AMED_5714 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_5714 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_5714 PF02929 Beta galactosidase small chain AMED_5714 PF13385 Concanavalin A-like lectin/glucanases superfamily AMED_5714 PF16353 AMED_5714 AMED_5715 PF00999 Sodium/hydrogen exchanger family AMED_5715 PF02080 TrkA-C domain AMED_5716 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMED_5717 PF00355 Rieske [2Fe-2S] domain AMED_5718 PF13631 Cytochrome b(N-terminal)/b6/petB AMED_5721 PF14342 AMED_5721 AMED_5723 PF04075 Domain of unknown function (DUF385) AMED_5724 PF01494 FAD binding domain AMED_5725 PF00440 Bacterial regulatory proteins, tetR family AMED_5726 PF00072 Response regulator receiver domain AMED_5726 PF00486 Transcriptional regulatory protein, C terminal AMED_5727 PF00512 His Kinase A (phospho-acceptor) domain AMED_5727 PF00672 HAMP domain AMED_5727 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5729 PF01638 HxlR-like helix-turn-helix AMED_5730 PF13628 AMED_5730 AMED_5731 PF01047 MarR family AMED_5732 PF00571 CBS domain AMED_5732 PF00654 Voltage gated chloride channel AMED_5733 PF00723 Glycosyl hydrolases family 15 AMED_5734 PF03779 AMED_5734 AMED_5735 PF07332 AMED_5735 AMED_5736 PF14325 AMED_5736 AMED_5740 PF13247 4Fe-4S dicluster domain AMED_5741 PF03916 AMED_5741 AMED_5743 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_5743 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_5743 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_5744 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein AMED_5747 PF01226 Formate/nitrite transporter AMED_5749 PF03600 Citrate transporter AMED_5750 PF00571 CBS domain AMED_5751 PF00999 Sodium/hydrogen exchanger family AMED_5754 PF04072 Leucine carboxyl methyltransferase AMED_5755 PF06210 AMED_5755 AMED_5757 PF00941 FAD binding domain in molybdopterin dehydrogenase AMED_5757 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMED_5758 PF01799 [2Fe-2S] binding domain AMED_5759 PF10012 AMED_5759 AMED_5760 PF00248 Aldo/keto reductase family AMED_5761 PF00107 Zinc-binding dehydrogenase AMED_5761 PF08240 Alcohol dehydrogenase GroES-like domain AMED_5762 PF00106 short chain dehydrogenase AMED_5763 PF13560 Helix-turn-helix domain AMED_5764 PF00248 Aldo/keto reductase family AMED_5765 PF13560 Helix-turn-helix domain AMED_5766 PF07883 Cupin domain AMED_5767 PF12682 Flavodoxin AMED_5768 PF13416 Bacterial extracellular solute-binding protein AMED_5769 PF05592 Bacterial alpha-L-rhamnosidase AMED_5769 PF08531 Alpha-L-rhamnosidase N-terminal domain AMED_5770 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5771 PF00528 Binding-protein-dependent transport system inner membrane component AMED_5772 PF00356 Bacterial regulatory proteins, lacI family AMED_5772 PF13377 Periplasmic binding protein-like domain AMED_5773 PF13377 Periplasmic binding protein-like domain AMED_5774 PF05592 Bacterial alpha-L-rhamnosidase AMED_5775 PF17132 AMED_5775 AMED_5776 PF00196 Bacterial regulatory proteins, luxR family AMED_5777 PF00356 Bacterial regulatory proteins, lacI family AMED_5777 PF13377 Periplasmic binding protein-like domain AMED_5778 PF12680 SnoaL-like domain AMED_5779 PF00753 Metallo-beta-lactamase superfamily AMED_5781 PF12833 Helix-turn-helix domain AMED_5782 PF05592 Bacterial alpha-L-rhamnosidase AMED_5782 PF08531 Alpha-L-rhamnosidase N-terminal domain AMED_5783 PF13546 AMED_5783 AMED_5786 PF10935 AMED_5786 AMED_5789 PF00691 OmpA family AMED_5790 PF07721 Tetratricopeptide repeat AMED_5790 PF13424 Tetratricopeptide repeat AMED_5790 PF13432 Tetratricopeptide repeat AMED_5792 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMED_5794 PF12770 AMED_5794 AMED_5800 PF13340 AMED_5800 AMED_5801 PF13586 AMED_5801 AMED_5803 PF13020 AMED_5803 AMED_5804 PF02371 AMED_5804 AMED_5805 PF13546 AMED_5805 AMED_5806 PF13340 AMED_5806 AMED_5807 PF04471 Restriction endonuclease AMED_5808 PF08798 CRISPR associated protein AMED_5809 PF09704 CRISPR-associated protein (Cas_Cas5) AMED_5810 PF09344 CT1975-like protein AMED_5811 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) AMED_5812 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) AMED_5814 PF00270 DEAD/DEAH box helicase AMED_5815 PF00665 Integrase core domain AMED_5815 PF13276 AMED_5815 AMED_5816 PF01527 Transposase AMED_5819 PF13683 AMED_5819 AMED_5822 PF00171 Aldehyde dehydrogenase family AMED_5824 PF00400 WD domain, G-beta repeat AMED_5826 PF00239 Resolvase, N terminal domain AMED_5826 PF07508 Recombinase AMED_5826 PF13408 Recombinase zinc beta ribbon domain AMED_5827 PF00553 Cellulose binding domain AMED_5831 PF00011 Hsp20/alpha crystallin family AMED_5832 PF04075 Domain of unknown function (DUF385) AMED_5833 PF01425 Amidase AMED_5834 PF06445 GyrI-like small molecule binding domain AMED_5834 PF13411 MerR HTH family regulatory protein AMED_5835 PF12840 Helix-turn-helix domain AMED_5836 PF01545 Cation efflux family AMED_5836 PF16916 AMED_5836 AMED_5837 PF13516 Leucine Rich repeat AMED_5838 PF07690 Major Facilitator Superfamily AMED_5839 PF00455 AMED_5839 AMED_5839 PF08220 DeoR-like helix-turn-helix domain AMED_5840 PF00440 Bacterial regulatory proteins, tetR family AMED_5840 PF13977 Bacterial transcriptional repressor AMED_5841 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_5842 PF01261 Xylose isomerase-like TIM barrel AMED_5844 PF04672 S-adenosyl methyltransferase AMED_5846 PF01547 Bacterial extracellular solute-binding protein AMED_5848 PF13768 von Willebrand factor type A domain AMED_5849 PF00069 Protein kinase domain AMED_5849 PF16918 AMED_5849 AMED_5849 PF16919 AMED_5849 AMED_5850 PF13365 Trypsin-like peptidase domain AMED_5851 PF12730 AMED_5851 AMED_5852 PF00005 ABC transporter AMED_5853 PF00392 Bacterial regulatory proteins, gntR family AMED_5854 PF04199 Putative cyclase AMED_5855 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_5855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_5855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_5856 PF01844 HNH endonuclease AMED_5856 PF02720 AMED_5856 AMED_5857 PF01037 AsnC family AMED_5857 PF13412 Winged helix-turn-helix DNA-binding AMED_5858 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMED_5858 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_5859 PF00072 Response regulator receiver domain AMED_5859 PF00196 Bacterial regulatory proteins, luxR family AMED_5861 PF02525 Flavodoxin-like fold AMED_5862 PF01047 MarR family AMED_5864 PF02517 CAAX protease self-immunity AMED_5865 PF13460 NADH(P)-binding AMED_5866 PF00892 EamA-like transporter family AMED_5867 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_5867 PF03466 LysR substrate binding domain AMED_5868 PF03466 LysR substrate binding domain AMED_5869 PF00291 Pyridoxal-phosphate dependent enzyme AMED_5870 PF00296 Luciferase-like monooxygenase AMED_5872 PF00877 NlpC/P60 family AMED_5874 PF11272 AMED_5874 AMED_5877 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMED_5877 PF07497 Rho termination factor, RNA-binding domain AMED_5878 PF13581 Histidine kinase-like ATPase domain AMED_5880 PF00331 Glycosyl hydrolase family 10 AMED_5880 PF10503 Esterase PHB depolymerase AMED_5881 PF13560 Helix-turn-helix domain AMED_5882 PF00106 short chain dehydrogenase AMED_5883 PF00106 short chain dehydrogenase AMED_5884 PF01256 Carbohydrate kinase AMED_5885 PF00300 Histidine phosphatase superfamily (branch 1) AMED_5886 PF07228 Stage II sporulation protein E (SpoIIE) AMED_5886 PF13185 GAF domain AMED_5887 PF13466 STAS domain AMED_5888 PF01740 STAS domain AMED_5889 PF07228 Stage II sporulation protein E (SpoIIE) AMED_5889 PF13185 GAF domain AMED_5890 PF13581 Histidine kinase-like ATPase domain AMED_5891 PF00072 Response regulator receiver domain AMED_5891 PF00512 His Kinase A (phospho-acceptor) domain AMED_5891 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_5891 PF07228 Stage II sporulation protein E (SpoIIE) AMED_5891 PF08448 PAS fold AMED_5891 PF13581 Histidine kinase-like ATPase domain AMED_5892 PF13466 STAS domain AMED_5893 PF03861 ANTAR domain AMED_5893 PF13185 GAF domain AMED_5894 PF13581 Histidine kinase-like ATPase domain AMED_5895 PF00723 Glycosyl hydrolases family 15 AMED_5895 PF09137 Glucodextranase, domain N AMED_5895 PF09985 Domain of unknown function (DUF2223) AMED_5896 PF04978 Protein of unknown function (DUF664) AMED_5897 PF00248 Aldo/keto reductase family AMED_5898 PF00106 short chain dehydrogenase AMED_5900 PF12697 Alpha/beta hydrolase family AMED_5901 PF05331 AMED_5901 AMED_5903 PF00486 Transcriptional regulatory protein, C terminal AMED_5903 PF00931 NB-ARC domain AMED_5903 PF03704 Bacterial transcriptional activator domain AMED_5903 PF13424 Tetratricopeptide repeat AMED_5904 PF13560 Helix-turn-helix domain AMED_5905 PF02441 Flavoprotein AMED_5910 PF01580 FtsK/SpoIIIE family AMED_5913 PF12728 Helix-turn-helix domain AMED_5915 PF00589 Phage integrase family AMED_5916 PF00171 Aldehyde dehydrogenase family AMED_5919 PF03734 L,D-transpeptidase catalytic domain AMED_5923 PF13560 Helix-turn-helix domain AMED_5924 PF10014 2OG-Fe dioxygenase AMED_5925 PF01740 STAS domain AMED_5926 PF01625 Peptide methionine sulfoxide reductase AMED_5927 PF01447 Thermolysin metallopeptidase, catalytic domain AMED_5927 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMED_5927 PF05345 Putative Ig domain AMED_5927 PF07504 Fungalysin/Thermolysin Propeptide Motif AMED_5928 PF02566 OsmC-like protein AMED_5929 PF00005 ABC transporter AMED_5929 PF13732 AMED_5929 AMED_5930 PF01061 AMED_5930 AMED_5931 PF04075 Domain of unknown function (DUF385) AMED_5933 PF00106 short chain dehydrogenase AMED_5934 PF00069 Protein kinase domain AMED_5936 PF03795 YCII-related domain AMED_5937 PF02146 Sir2 family AMED_5939 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMED_5939 PF10531 SLBB domain AMED_5939 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMED_5940 PF01794 AMED_5940 AMED_5941 PF02424 ApbE family AMED_5943 PF04185 Phosphoesterase family AMED_5944 PF07690 Major Facilitator Superfamily AMED_5945 PF07676 WD40-like Beta Propeller Repeat AMED_5947 PF07519 Tannase and feruloyl esterase AMED_5948 PF10503 Esterase PHB depolymerase AMED_5949 PF02624 YcaO-like family AMED_5952 PF13185 GAF domain AMED_5952 PF13556 PucR C-terminal helix-turn-helix domain AMED_5953 PF00083 Sugar (and other) transporter AMED_5954 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_5955 PF01381 Helix-turn-helix AMED_5956 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_5957 PF08279 HTH domain AMED_5957 PF13280 AMED_5957 AMED_5958 PF00501 AMP-binding enzyme AMED_5958 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_5958 PF13193 AMP-binding enzyme C-terminal domain AMED_5959 PF06445 GyrI-like small molecule binding domain AMED_5960 PF03551 Transcriptional regulator PadR-like family AMED_5961 PF04434 AMED_5961 AMED_5963 PF07728 AAA domain (dynein-related subfamily) AMED_5965 PF05762 VWA domain containing CoxE-like protein AMED_5966 PF00444 Ribosomal protein L36 AMED_5967 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_5968 PF01638 HxlR-like helix-turn-helix AMED_5968 PF02036 SCP-2 sterol transfer family AMED_5969 PF00743 Flavin-binding monooxygenase-like AMED_5970 PF02278 Polysaccharide lyase family 8, super-sandwich domain AMED_5970 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AMED_5970 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AMED_5971 PF00171 Aldehyde dehydrogenase family AMED_5973 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_5973 PF13378 Enolase C-terminal domain-like AMED_5974 PF00701 Dihydrodipicolinate synthetase family AMED_5975 PF00474 Sodium:solute symporter family AMED_5976 PF01614 Bacterial transcriptional regulator AMED_5976 PF09339 IclR helix-turn-helix domain AMED_5977 PF01370 NAD dependent epimerase/dehydratase family AMED_5978 PF02861 Clp amino terminal domain AMED_5979 PF13384 Homeodomain-like domain AMED_5980 PF01522 Polysaccharide deacetylase AMED_5981 PF07730 Histidine kinase AMED_5982 PF00072 Response regulator receiver domain AMED_5982 PF00196 Bacterial regulatory proteins, luxR family AMED_5984 PF13229 Right handed beta helix region AMED_5985 PF00440 Bacterial regulatory proteins, tetR family AMED_5986 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_5987 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_5988 PF13803 AMED_5988 AMED_5989 PF12833 Helix-turn-helix domain AMED_5990 PF00465 Iron-containing alcohol dehydrogenase AMED_5990 PF00775 Dioxygenase AMED_5990 PF04444 Catechol dioxygenase N terminus AMED_5991 PF01494 FAD binding domain AMED_5992 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMED_5995 PF01433 Peptidase family M1 AMED_5996 PF00501 AMP-binding enzyme AMED_5996 PF00550 Phosphopantetheine attachment site AMED_5996 PF14602 Hexapeptide repeat of succinyl-transferase AMED_5997 PF01926 50S ribosome-binding GTPase AMED_5997 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMED_5998 PF01553 Acyltransferase AMED_5999 PF02224 Cytidylate kinase AMED_6000 PF00440 Bacterial regulatory proteins, tetR family AMED_6000 PF13305 WHG domain AMED_6001 PF14087 AMED_6001 AMED_6002 PF02080 TrkA-C domain AMED_6003 PF00999 Sodium/hydrogen exchanger family AMED_6004 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_6004 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6005 PF04072 Leucine carboxyl methyltransferase AMED_6006 PF00849 RNA pseudouridylate synthase AMED_6006 PF01479 S4 domain AMED_6007 PF04079 Putative transcriptional regulators (Ypuh-like) AMED_6008 PF02616 ScpA/B protein AMED_6010 PF13614 AAA domain AMED_6011 PF00589 Phage integrase family AMED_6011 PF02899 Phage integrase, N-terminal SAM-like domain AMED_6012 PF05154 AMED_6012 AMED_6012 PF08044 AMED_6012 AMED_6013 PF00293 NUDIX domain AMED_6014 PF00117 Glutamine amidotransferase class-I AMED_6014 PF06418 CTP synthase N-terminus AMED_6015 PF01757 AMED_6015 AMED_6016 PF00392 Bacterial regulatory proteins, gntR family AMED_6016 PF07729 FCD domain AMED_6017 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMED_6018 PF01177 Asp/Glu/Hydantoin racemase AMED_6019 PF05426 Alginate lyase AMED_6020 PF03995 Peptidase inhibitor family I36 AMED_6021 PF11382 AMED_6021 AMED_6022 PF12555 AMED_6022 AMED_6023 PF06889 AMED_6023 AMED_6024 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6024 PF13602 Zinc-binding dehydrogenase AMED_6025 PF12802 MarR family AMED_6026 PF02463 RecF/RecN/SMC N terminal domain AMED_6027 PF01513 ATP-NAD kinase AMED_6028 PF01479 S4 domain AMED_6028 PF01728 FtsJ-like methyltransferase AMED_6030 PF13242 HAD-hyrolase-like AMED_6030 PF13344 Haloacid dehalogenase-like hydrolase AMED_6032 PF00579 tRNA synthetases class I (W and Y) AMED_6033 PF02245 Methylpurine-DNA glycosylase (MPG) AMED_6035 PF13761 AMED_6035 AMED_6036 PF00440 Bacterial regulatory proteins, tetR family AMED_6037 PF00206 Lyase AMED_6037 PF14698 Argininosuccinate lyase C-terminal AMED_6038 PF00764 Arginosuccinate synthase AMED_6039 PF01316 Arginine repressor, DNA binding domain AMED_6039 PF02863 Arginine repressor, C-terminal domain AMED_6040 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMED_6040 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMED_6041 PF00202 Aminotransferase class-III AMED_6042 PF00696 Amino acid kinase family AMED_6043 PF01960 ArgJ family AMED_6044 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMED_6044 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMED_6045 PF08279 HTH domain AMED_6045 PF13280 AMED_6045 AMED_6048 PF00561 alpha/beta hydrolase fold AMED_6048 PF08386 TAP-like protein AMED_6049 PF08713 DNA alkylation repair enzyme AMED_6050 PF01588 Putative tRNA binding domain AMED_6050 PF03147 Ferredoxin-fold anticodon binding domain AMED_6050 PF03483 B3/4 domain AMED_6050 PF03484 tRNA synthetase B5 domain AMED_6051 PF01409 tRNA synthetases class II core domain (F) AMED_6051 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMED_6053 PF00588 SpoU rRNA Methylase family AMED_6053 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMED_6054 PF00453 Ribosomal protein L20 AMED_6055 PF01632 Ribosomal protein L35 AMED_6056 PF00707 Translation initiation factor IF-3, C-terminal domain AMED_6056 PF05198 Translation initiation factor IF-3, N-terminal domain AMED_6058 PF00392 Bacterial regulatory proteins, gntR family AMED_6058 PF07729 FCD domain AMED_6059 PF00291 Pyridoxal-phosphate dependent enzyme AMED_6060 PF01042 Endoribonuclease L-PSP AMED_6061 PF01614 Bacterial transcriptional regulator AMED_6061 PF09339 IclR helix-turn-helix domain AMED_6062 PF00294 pfkB family carbohydrate kinase AMED_6063 PF01168 Alanine racemase, N-terminal domain AMED_6063 PF14031 Putative serine dehydratase domain AMED_6064 PF07969 Amidohydrolase family AMED_6065 PF02447 AMED_6065 AMED_6066 PF10282 Lactonase, 7-bladed beta-propeller AMED_6067 PF01547 Bacterial extracellular solute-binding protein AMED_6068 PF00528 Binding-protein-dependent transport system inner membrane component AMED_6069 PF00528 Binding-protein-dependent transport system inner membrane component AMED_6070 PF00728 Glycosyl hydrolase family 20, catalytic domain AMED_6070 PF02838 Glycosyl hydrolase family 20, domain 2 AMED_6071 PF09471 IgA Peptidase M64 AMED_6072 PF00072 Response regulator receiver domain AMED_6073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6073 PF13188 PAS domain AMED_6073 PF17203 AMED_6073 AMED_6074 PF00375 Sodium:dicarboxylate symporter family AMED_6075 PF01638 HxlR-like helix-turn-helix AMED_6076 PF07690 Major Facilitator Superfamily AMED_6077 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_6079 PF04542 Sigma-70 region 2 AMED_6079 PF04545 Sigma-70, region 4 AMED_6080 PF03640 AMED_6080 AMED_6082 PF00005 ABC transporter AMED_6083 PF01757 AMED_6083 AMED_6084 PF00753 Metallo-beta-lactamase superfamily AMED_6085 PF00580 UvrD/REP helicase N-terminal domain AMED_6087 PF07920 Protein of unknown function (DUF1684) AMED_6090 PF00027 Cyclic nucleotide-binding domain AMED_6090 PF13545 Crp-like helix-turn-helix domain AMED_6091 PF00075 RNase H AMED_6094 PF00703 Glycosyl hydrolases family 2 AMED_6094 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_6094 PF03422 Carbohydrate binding module (family 6) AMED_6095 PF00135 Carboxylesterase family AMED_6096 PF12680 SnoaL-like domain AMED_6097 PF00999 Sodium/hydrogen exchanger family AMED_6097 PF02148 Zn-finger in ubiquitin-hydrolases and other protein AMED_6098 PF00300 Histidine phosphatase superfamily (branch 1) AMED_6099 PF03649 AMED_6099 AMED_6100 PF05423 Mycobacterium membrane protein AMED_6101 PF12833 Helix-turn-helix domain AMED_6102 PF00356 Bacterial regulatory proteins, lacI family AMED_6102 PF13377 Periplasmic binding protein-like domain AMED_6104 PF08808 AMED_6104 AMED_6106 PF03795 YCII-related domain AMED_6107 PF00326 Prolyl oligopeptidase family AMED_6107 PF07676 WD40-like Beta Propeller Repeat AMED_6108 PF03741 AMED_6108 AMED_6109 PF00005 ABC transporter AMED_6109 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6109 PF12146 Putative lysophospholipase AMED_6110 PF01548 AMED_6110 AMED_6110 PF02371 AMED_6110 AMED_6111 PF12679 AMED_6111 AMED_6113 PF00378 Enoyl-CoA hydratase/isomerase family AMED_6114 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_6115 PF05576 PS-10 peptidase S37 AMED_6116 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_6117 PF00271 Helicase conserved C-terminal domain AMED_6117 PF02151 UvrB/uvrC motif AMED_6117 PF04851 Type III restriction enzyme, res subunit AMED_6117 PF12344 Ultra-violet resistance protein B AMED_6121 PF04167 Protein of unknown function (DUF402) AMED_6122 PF01121 Dephospho-CoA kinase AMED_6122 PF04229 GrpB protein AMED_6125 PF02566 OsmC-like protein AMED_6126 PF00440 Bacterial regulatory proteins, tetR family AMED_6126 PF13305 WHG domain AMED_6127 PF00575 S1 RNA binding domain AMED_6128 PF08241 Methyltransferase domain AMED_6129 PF00583 Acetyltransferase (GNAT) family AMED_6130 PF00583 Acetyltransferase (GNAT) family AMED_6132 PF12698 ABC-2 family transporter protein AMED_6133 PF00440 Bacterial regulatory proteins, tetR family AMED_6134 PF02311 AraC-like ligand binding domain AMED_6134 PF12833 Helix-turn-helix domain AMED_6135 PF13602 Zinc-binding dehydrogenase AMED_6136 PF13365 Trypsin-like peptidase domain AMED_6137 PF13202 EF hand AMED_6137 PF13499 EF-hand domain pair AMED_6138 PF00476 DNA polymerase family A AMED_6138 PF01367 5'-3' exonuclease, C-terminal SAM fold AMED_6138 PF01612 3'-5' exonuclease AMED_6138 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMED_6139 PF03061 Thioesterase superfamily AMED_6140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6140 PF03466 LysR substrate binding domain AMED_6141 PF00326 Prolyl oligopeptidase family AMED_6142 PF13458 Periplasmic binding protein AMED_6143 PF02653 AMED_6143 AMED_6144 PF02653 AMED_6144 AMED_6145 PF00005 ABC transporter AMED_6145 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMED_6146 PF00005 ABC transporter AMED_6147 PF11611 Domain of unknown function (DUF4352) AMED_6148 PF00072 Response regulator receiver domain AMED_6148 PF03861 ANTAR domain AMED_6149 PF00589 Phage integrase family AMED_6150 PF12307 AMED_6150 AMED_6151 PF00145 C-5 cytosine-specific DNA methylase AMED_6159 PF00436 Single-strand binding protein family AMED_6168 PF04686 Streptomyces sporulation and cell division protein, SsgA AMED_6169 PF00293 NUDIX domain AMED_6173 PF00392 Bacterial regulatory proteins, gntR family AMED_6176 PF00583 Acetyltransferase (GNAT) family AMED_6178 PF05729 NACHT domain AMED_6181 PF04542 Sigma-70 region 2 AMED_6181 PF08281 Sigma-70, region 4 AMED_6182 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_6183 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_6184 PF12802 MarR family AMED_6185 PF14011 EspG family AMED_6187 PF12079 AMED_6187 AMED_6191 PF07730 Histidine kinase AMED_6192 PF00072 Response regulator receiver domain AMED_6192 PF00196 Bacterial regulatory proteins, luxR family AMED_6193 PF06271 AMED_6193 AMED_6194 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_6195 PF10067 AMED_6195 AMED_6196 PF00072 Response regulator receiver domain AMED_6196 PF00196 Bacterial regulatory proteins, luxR family AMED_6197 PF07730 Histidine kinase AMED_6198 PF12770 AMED_6198 AMED_6199 PF00931 NB-ARC domain AMED_6201 PF01370 NAD dependent epimerase/dehydratase family AMED_6202 PF00005 ABC transporter AMED_6203 PF13354 Beta-lactamase enzyme family AMED_6205 PF04542 Sigma-70 region 2 AMED_6205 PF08281 Sigma-70, region 4 AMED_6206 PF00465 Iron-containing alcohol dehydrogenase AMED_6207 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_6207 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_6208 PF00171 Aldehyde dehydrogenase family AMED_6209 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_6209 PF13378 Enolase C-terminal domain-like AMED_6210 PF08714 Formaldehyde-activating enzyme (Fae) AMED_6211 PF01614 Bacterial transcriptional regulator AMED_6211 PF09339 IclR helix-turn-helix domain AMED_6212 PF06441 Epoxide hydrolase N terminus AMED_6213 PF13560 Helix-turn-helix domain AMED_6215 PF12697 Alpha/beta hydrolase family AMED_6216 PF01965 DJ-1/PfpI family AMED_6216 PF12833 Helix-turn-helix domain AMED_6217 PF06441 Epoxide hydrolase N terminus AMED_6218 PF00440 Bacterial regulatory proteins, tetR family AMED_6219 PF00106 short chain dehydrogenase AMED_6220 PF13560 Helix-turn-helix domain AMED_6222 PF03861 ANTAR domain AMED_6222 PF13185 GAF domain AMED_6223 PF04539 Sigma-70 region 3 AMED_6223 PF04542 Sigma-70 region 2 AMED_6223 PF04545 Sigma-70, region 4 AMED_6224 PF13581 Histidine kinase-like ATPase domain AMED_6225 PF04389 Peptidase family M28 AMED_6226 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMED_6227 PF00291 Pyridoxal-phosphate dependent enzyme AMED_6228 PF00668 Condensation domain AMED_6229 PF00975 Thioesterase domain AMED_6230 PF00550 Phosphopantetheine attachment site AMED_6230 PF00668 Condensation domain AMED_6230 PF13745 HxxPF-repeated domain AMED_6231 PF00501 AMP-binding enzyme AMED_6231 PF00550 Phosphopantetheine attachment site AMED_6231 PF00668 Condensation domain AMED_6231 PF13649 Methyltransferase domain AMED_6231 PF13745 HxxPF-repeated domain AMED_6232 PF00501 AMP-binding enzyme AMED_6232 PF13193 AMP-binding enzyme C-terminal domain AMED_6233 PF05977 Transmembrane secretion effector AMED_6234 PF00501 AMP-binding enzyme AMED_6234 PF00550 Phosphopantetheine attachment site AMED_6234 PF00668 Condensation domain AMED_6234 PF13193 AMP-binding enzyme C-terminal domain AMED_6236 PF03621 MbtH-like protein AMED_6237 PF00501 AMP-binding enzyme AMED_6237 PF00550 Phosphopantetheine attachment site AMED_6237 PF00668 Condensation domain AMED_6237 PF13193 AMP-binding enzyme C-terminal domain AMED_6237 PF13745 HxxPF-repeated domain AMED_6238 PF00067 Cytochrome P450 AMED_6241 PF00501 AMP-binding enzyme AMED_6241 PF00550 Phosphopantetheine attachment site AMED_6241 PF00975 Thioesterase domain AMED_6241 PF13193 AMP-binding enzyme C-terminal domain AMED_6242 PF00501 AMP-binding enzyme AMED_6242 PF00550 Phosphopantetheine attachment site AMED_6242 PF00668 Condensation domain AMED_6242 PF13193 AMP-binding enzyme C-terminal domain AMED_6242 PF13745 HxxPF-repeated domain AMED_6243 PF00501 AMP-binding enzyme AMED_6243 PF00550 Phosphopantetheine attachment site AMED_6243 PF13193 AMP-binding enzyme C-terminal domain AMED_6244 PF00196 Bacterial regulatory proteins, luxR family AMED_6244 PF13191 AAA ATPase domain AMED_6245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6245 PF03466 LysR substrate binding domain AMED_6246 PF07336 Protein of unknown function (DUF1470) AMED_6246 PF11706 CGNR zinc finger AMED_6247 PF07690 Major Facilitator Superfamily AMED_6248 PF13460 NADH(P)-binding AMED_6249 PF03799 Cell division protein FtsQ AMED_6249 PF08478 POTRA domain, FtsQ-type AMED_6250 PF01225 Mur ligase family, catalytic domain AMED_6250 PF02875 Mur ligase family, glutamate ligase domain AMED_6250 PF08245 Mur ligase middle domain AMED_6251 PF03033 Glycosyltransferase family 28 N-terminal domain AMED_6251 PF04101 Glycosyltransferase family 28 C-terminal domain AMED_6252 PF01098 AMED_6252 AMED_6253 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMED_6253 PF08245 Mur ligase middle domain AMED_6254 PF00953 Glycosyl transferase family 4 AMED_6254 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMED_6255 PF01225 Mur ligase family, catalytic domain AMED_6255 PF02875 Mur ligase family, glutamate ligase domain AMED_6255 PF08245 Mur ligase middle domain AMED_6256 PF01225 Mur ligase family, catalytic domain AMED_6256 PF02875 Mur ligase family, glutamate ligase domain AMED_6256 PF08245 Mur ligase middle domain AMED_6258 PF00905 Penicillin binding protein transpeptidase domain AMED_6258 PF03717 Penicillin-binding Protein dimerisation domain AMED_6260 PF01795 MraW methylase family AMED_6261 PF02381 MraZ protein AMED_6263 PF14011 EspG family AMED_6264 PF00823 PPE family AMED_6265 PF12079 AMED_6265 AMED_6267 PF07726 ATPase family associated with various cellular activities (AAA) AMED_6268 PF01882 AMED_6268 AMED_6269 PF01841 Transglutaminase-like superfamily AMED_6270 PF11239 AMED_6270 AMED_6271 PF00817 impB/mucB/samB family AMED_6271 PF11798 IMS family HHH motif AMED_6271 PF11799 impB/mucB/samB family C-terminal domain AMED_6272 PF13489 Methyltransferase domain AMED_6273 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_6274 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_6274 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMED_6275 PF00962 Adenosine/AMP deaminase AMED_6276 PF13302 Acetyltransferase (GNAT) domain AMED_6277 PF01180 Dihydroorotate dehydrogenase AMED_6278 PF01425 Amidase AMED_6280 PF04012 AMED_6280 AMED_6281 PF13560 Helix-turn-helix domain AMED_6282 PF02464 Competence-damaged protein AMED_6283 PF01066 CDP-alcohol phosphatidyltransferase AMED_6284 PF00919 Uncharacterized protein family UPF0004 AMED_6284 PF04055 Radical SAM superfamily AMED_6285 PF00583 Acetyltransferase (GNAT) family AMED_6286 PF09056 Prokaryotic phospholipase A2 AMED_6287 PF00881 Nitroreductase family AMED_6289 PF13707 AMED_6289 AMED_6290 PF13304 AAA domain AMED_6291 PF01580 FtsK/SpoIIIE family AMED_6291 PF09397 Ftsk gamma domain AMED_6291 PF13491 AMED_6291 AMED_6292 PF01553 Acyltransferase AMED_6293 PF03358 NADPH-dependent FMN reductase AMED_6296 PF00892 EamA-like transporter family AMED_6297 PF00324 Amino acid permease AMED_6298 PF00092 von Willebrand factor type A domain AMED_6298 PF13531 Bacterial extracellular solute-binding protein AMED_6299 PF00753 Metallo-beta-lactamase superfamily AMED_6299 PF07521 RNA-metabolising metallo-beta-lactamase AMED_6300 PF00701 Dihydrodipicolinate synthetase family AMED_6301 PF00069 Protein kinase domain AMED_6303 PF01566 AMED_6303 AMED_6304 PF13840 ACT domain AMED_6305 PF02511 Thymidylate synthase complementing protein AMED_6306 PF05534 AMED_6306 AMED_6307 PF13349 AMED_6307 AMED_6308 PF06224 AMED_6308 AMED_6309 PF00583 Acetyltransferase (GNAT) family AMED_6311 PF12844 Helix-turn-helix domain AMED_6313 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6313 PF03466 LysR substrate binding domain AMED_6316 PF01113 Dihydrodipicolinate reductase, N-terminus AMED_6316 PF05173 Dihydrodipicolinate reductase, C-terminus AMED_6317 PF00675 Insulinase (Peptidase family M16) AMED_6317 PF05193 Peptidase M16 inactive domain AMED_6318 PF00013 KH domain AMED_6318 PF00575 S1 RNA binding domain AMED_6318 PF01138 3' exoribonuclease family, domain 1 AMED_6318 PF03725 3' exoribonuclease family, domain 2 AMED_6318 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMED_6319 PF00312 Ribosomal protein S15 AMED_6320 PF13563 2'-5' RNA ligase superfamily AMED_6322 PF01687 Riboflavin kinase AMED_6322 PF06574 FAD synthetase AMED_6323 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMED_6323 PF09142 tRNA Pseudouridine synthase II, C terminal AMED_6323 PF16198 AMED_6323 AMED_6324 PF13673 Acetyltransferase (GNAT) domain AMED_6326 PF07690 Major Facilitator Superfamily AMED_6327 PF01554 MatE AMED_6328 PF01368 DHH family AMED_6328 PF02272 DHHA1 domain AMED_6329 PF01170 Putative RNA methylase family UPF0020 AMED_6330 PF01145 SPFH domain / Band 7 family AMED_6332 PF00440 Bacterial regulatory proteins, tetR family AMED_6333 PF13649 Methyltransferase domain AMED_6335 PF00756 Putative esterase AMED_6336 PF02033 Ribosome-binding factor A AMED_6337 PF04456 Protein of unknown function (DUF503) AMED_6338 PF00009 Elongation factor Tu GTP binding domain AMED_6338 PF04760 Translation initiation factor IF-2, N-terminal region AMED_6338 PF11987 Translation-initiation factor 2 AMED_6339 PF04296 Protein of unknown function (DUF448) AMED_6340 PF08529 NusA N-terminal domain AMED_6340 PF13184 NusA-like KH domain AMED_6341 PF02576 Uncharacterised BCR, YhbC family COG0779 AMED_6342 PF14530 Domain of unknown function (DUF4439) AMED_6344 PF00266 Aminotransferase class-V AMED_6345 PF13714 Phosphoenolpyruvate phosphomutase AMED_6346 PF03703 AMED_6346 AMED_6347 PF00440 Bacterial regulatory proteins, tetR family AMED_6348 PF05719 Golgi phosphoprotein 3 (GPP34) AMED_6349 PF07730 Histidine kinase AMED_6350 PF00072 Response regulator receiver domain AMED_6350 PF00196 Bacterial regulatory proteins, luxR family AMED_6351 PF13398 Peptidase M50B-like AMED_6352 PF01638 HxlR-like helix-turn-helix AMED_6353 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_6354 PF00440 Bacterial regulatory proteins, tetR family AMED_6355 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_6355 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6358 PF00072 Response regulator receiver domain AMED_6358 PF00486 Transcriptional regulatory protein, C terminal AMED_6359 PF00512 His Kinase A (phospho-acceptor) domain AMED_6359 PF00672 HAMP domain AMED_6359 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6361 PF00931 NB-ARC domain AMED_6361 PF13424 Tetratricopeptide repeat AMED_6363 PF00931 NB-ARC domain AMED_6363 PF03704 Bacterial transcriptional activator domain AMED_6363 PF13424 Tetratricopeptide repeat AMED_6365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6365 PF03466 LysR substrate binding domain AMED_6366 PF02515 CoA-transferase family III AMED_6367 PF00378 Enoyl-CoA hydratase/isomerase family AMED_6368 PF06314 Acetoacetate decarboxylase (ADC) AMED_6369 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_6369 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_6370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_6370 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_6370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_6371 PF03816 Cell envelope-related transcriptional attenuator domain AMED_6372 PF00106 short chain dehydrogenase AMED_6373 PF04542 Sigma-70 region 2 AMED_6373 PF08281 Sigma-70, region 4 AMED_6374 PF02467 AMED_6374 AMED_6375 PF08281 Sigma-70, region 4 AMED_6376 PF04542 Sigma-70 region 2 AMED_6376 PF08281 Sigma-70, region 4 AMED_6377 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6377 PF03466 LysR substrate binding domain AMED_6378 PF13593 SBF-like CPA transporter family (DUF4137) AMED_6380 PF07731 Multicopper oxidase AMED_6380 PF07732 Multicopper oxidase AMED_6381 PF00067 Cytochrome P450 AMED_6382 PF13565 AMED_6382 AMED_6383 PF13358 DDE superfamily endonuclease AMED_6384 PF13460 NADH(P)-binding AMED_6385 PF01872 RibD C-terminal domain AMED_6386 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_6386 PF12840 Helix-turn-helix domain AMED_6389 PF00486 Transcriptional regulatory protein, C terminal AMED_6389 PF00931 NB-ARC domain AMED_6389 PF03704 Bacterial transcriptional activator domain AMED_6389 PF13424 Tetratricopeptide repeat AMED_6394 PF03466 LysR substrate binding domain AMED_6396 PF00266 Aminotransferase class-V AMED_6397 PF13463 Winged helix DNA-binding domain AMED_6398 PF00561 alpha/beta hydrolase fold AMED_6399 PF00440 Bacterial regulatory proteins, tetR family AMED_6400 PF00301 Rubredoxin AMED_6400 PF00487 AMED_6400 AMED_6401 PF00672 HAMP domain AMED_6401 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6401 PF08376 Nitrate and nitrite sensing AMED_6402 PF03259 Roadblock/LC7 domain AMED_6403 PF05331 AMED_6403 AMED_6404 PF03029 Conserved hypothetical ATP binding protein AMED_6408 PF04542 Sigma-70 region 2 AMED_6408 PF08281 Sigma-70, region 4 AMED_6410 PF13564 AMED_6410 AMED_6411 PF00440 Bacterial regulatory proteins, tetR family AMED_6411 PF16925 AMED_6411 AMED_6412 PF07883 Cupin domain AMED_6413 PF09362 AMED_6413 AMED_6414 PF04616 Glycosyl hydrolases family 43 AMED_6417 PF04542 Sigma-70 region 2 AMED_6417 PF08281 Sigma-70, region 4 AMED_6418 PF03795 YCII-related domain AMED_6419 PF00561 alpha/beta hydrolase fold AMED_6420 PF00440 Bacterial regulatory proteins, tetR family AMED_6421 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6421 PF13602 Zinc-binding dehydrogenase AMED_6423 PF13365 Trypsin-like peptidase domain AMED_6424 PF13191 AAA ATPase domain AMED_6426 PF00012 Hsp70 protein AMED_6426 PF00656 Caspase domain AMED_6429 PF01979 Amidohydrolase family AMED_6430 PF00440 Bacterial regulatory proteins, tetR family AMED_6430 PF16859 AMED_6430 AMED_6431 PF00652 Ricin-type beta-trefoil lectin domain AMED_6431 PF02057 Glycosyl hydrolase family 59 AMED_6431 PF13385 Concanavalin A-like lectin/glucanases superfamily AMED_6432 PF00331 Glycosyl hydrolase family 10 AMED_6432 PF00652 Ricin-type beta-trefoil lectin domain AMED_6435 PF04542 Sigma-70 region 2 AMED_6435 PF04545 Sigma-70, region 4 AMED_6437 PF01979 Amidohydrolase family AMED_6439 PF02558 Ketopantoate reductase PanE/ApbA AMED_6440 PF00440 Bacterial regulatory proteins, tetR family AMED_6443 PF00196 Bacterial regulatory proteins, luxR family AMED_6445 PF01828 Peptidase A4 family AMED_6446 PF03704 Bacterial transcriptional activator domain AMED_6449 PF01757 AMED_6449 AMED_6451 PF00296 Luciferase-like monooxygenase AMED_6452 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_6453 PF01636 Phosphotransferase enzyme family AMED_6455 PF00440 Bacterial regulatory proteins, tetR family AMED_6456 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMED_6457 PF00486 Transcriptional regulatory protein, C terminal AMED_6457 PF00931 NB-ARC domain AMED_6457 PF03704 Bacterial transcriptional activator domain AMED_6457 PF13424 Tetratricopeptide repeat AMED_6459 PF01471 Putative peptidoglycan binding domain AMED_6460 PF01471 Putative peptidoglycan binding domain AMED_6462 PF12680 SnoaL-like domain AMED_6463 PF00248 Aldo/keto reductase family AMED_6464 PF00753 Metallo-beta-lactamase superfamily AMED_6465 PF00196 Bacterial regulatory proteins, luxR family AMED_6465 PF13191 AAA ATPase domain AMED_6466 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_6466 PF01799 [2Fe-2S] binding domain AMED_6466 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMED_6468 PF00196 Bacterial regulatory proteins, luxR family AMED_6469 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_6469 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_6469 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_6470 PF07167 AMED_6470 AMED_6471 PF00561 alpha/beta hydrolase fold AMED_6472 PF00501 AMP-binding enzyme AMED_6472 PF13193 AMP-binding enzyme C-terminal domain AMED_6473 PF00561 alpha/beta hydrolase fold AMED_6474 PF00440 Bacterial regulatory proteins, tetR family AMED_6475 PF12697 Alpha/beta hydrolase family AMED_6476 PF00196 Bacterial regulatory proteins, luxR family AMED_6476 PF13191 AAA ATPase domain AMED_6477 PF00196 Bacterial regulatory proteins, luxR family AMED_6477 PF13191 AAA ATPase domain AMED_6478 PF07690 Major Facilitator Superfamily AMED_6479 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_6479 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6480 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_6480 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6481 PF00083 Sugar (and other) transporter AMED_6481 PF07690 Major Facilitator Superfamily AMED_6482 PF00754 F5/8 type C domain AMED_6483 PF02426 Muconolactone delta-isomerase AMED_6484 PF01740 STAS domain AMED_6485 PF13466 STAS domain AMED_6486 PF13581 Histidine kinase-like ATPase domain AMED_6486 PF14417 AMED_6486 AMED_6487 PF13581 Histidine kinase-like ATPase domain AMED_6488 PF09339 IclR helix-turn-helix domain AMED_6489 PF00005 ABC transporter AMED_6491 PF07730 Histidine kinase AMED_6492 PF00072 Response regulator receiver domain AMED_6492 PF00196 Bacterial regulatory proteins, luxR family AMED_6495 PF09335 AMED_6495 AMED_6496 PF02535 AMED_6496 AMED_6497 PF02673 AMED_6497 AMED_6498 PF03965 Penicillinase repressor AMED_6499 PF01435 Peptidase family M48 AMED_6501 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AMED_6503 PF00005 ABC transporter AMED_6504 PF12679 AMED_6504 AMED_6505 PF07730 Histidine kinase AMED_6506 PF00072 Response regulator receiver domain AMED_6506 PF00196 Bacterial regulatory proteins, luxR family AMED_6510 PF00440 Bacterial regulatory proteins, tetR family AMED_6511 PF05368 NmrA-like family AMED_6512 PF13460 NADH(P)-binding AMED_6513 PF07883 Cupin domain AMED_6514 PF01965 DJ-1/PfpI family AMED_6515 PF07859 alpha/beta hydrolase fold AMED_6516 PF07859 alpha/beta hydrolase fold AMED_6517 PF07690 Major Facilitator Superfamily AMED_6518 PF00106 short chain dehydrogenase AMED_6519 PF13460 NADH(P)-binding AMED_6520 PF01966 HD domain AMED_6520 PF12680 SnoaL-like domain AMED_6521 PF12802 MarR family AMED_6522 PF01965 DJ-1/PfpI family AMED_6522 PF12833 Helix-turn-helix domain AMED_6523 PF01966 HD domain AMED_6524 PF01042 Endoribonuclease L-PSP AMED_6526 PF03861 ANTAR domain AMED_6526 PF13185 GAF domain AMED_6527 PF00122 E1-E2 ATPase AMED_6527 PF00403 Heavy-metal-associated domain AMED_6527 PF00702 haloacid dehalogenase-like hydrolase AMED_6528 PF00403 Heavy-metal-associated domain AMED_6529 PF04542 Sigma-70 region 2 AMED_6529 PF08281 Sigma-70, region 4 AMED_6530 PF04542 Sigma-70 region 2 AMED_6530 PF08281 Sigma-70, region 4 AMED_6531 PF13490 Putative zinc-finger AMED_6532 PF01965 DJ-1/PfpI family AMED_6533 PF00005 ABC transporter AMED_6534 PF01032 FecCD transport family AMED_6535 PF01497 Periplasmic binding protein AMED_6536 PF04234 CopC domain AMED_6537 PF00122 E1-E2 ATPase AMED_6537 PF00403 Heavy-metal-associated domain AMED_6537 PF00702 haloacid dehalogenase-like hydrolase AMED_6538 PF17197 AMED_6538 AMED_6539 PF03929 AMED_6539 AMED_6541 PF01740 STAS domain AMED_6541 PF03861 ANTAR domain AMED_6541 PF13185 GAF domain AMED_6542 PF03861 ANTAR domain AMED_6542 PF13185 GAF domain AMED_6544 PF13185 GAF domain AMED_6545 PF03861 ANTAR domain AMED_6546 PF03861 ANTAR domain AMED_6546 PF13185 GAF domain AMED_6547 PF03861 ANTAR domain AMED_6547 PF13185 GAF domain AMED_6549 PF09954 AMED_6549 AMED_6551 PF03861 ANTAR domain AMED_6551 PF13185 GAF domain AMED_6552 PF07228 Stage II sporulation protein E (SpoIIE) AMED_6553 PF02566 OsmC-like protein AMED_6558 PF00384 Molybdopterin oxidoreductase AMED_6558 PF01568 Molydopterin dinucleotide binding domain AMED_6561 PF00107 Zinc-binding dehydrogenase AMED_6561 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6561 PF13823 Alcohol dehydrogenase GroES-associated AMED_6562 PF03861 ANTAR domain AMED_6562 PF13185 GAF domain AMED_6563 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6563 PF13602 Zinc-binding dehydrogenase AMED_6564 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_6565 PF03022 Major royal jelly protein AMED_6566 PF00171 Aldehyde dehydrogenase family AMED_6567 PF13515 AMED_6567 AMED_6568 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_6568 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_6568 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_6569 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_6569 PF13378 Enolase C-terminal domain-like AMED_6570 PF01565 FAD binding domain AMED_6570 PF02754 AMED_6570 AMED_6570 PF02913 FAD linked oxidases, C-terminal domain AMED_6570 PF13183 4Fe-4S dicluster domain AMED_6571 PF06150 ChaB AMED_6571 PF07498 Rho termination factor, N-terminal domain AMED_6573 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_6573 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_6574 PF00871 Acetokinase family AMED_6575 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AMED_6575 PF09363 XFP C-terminal domain AMED_6575 PF09364 XFP N-terminal domain AMED_6576 PF01814 Hemerythrin HHE cation binding domain AMED_6577 PF04454 Encapsulating protein for peroxidase AMED_6578 PF00107 Zinc-binding dehydrogenase AMED_6578 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6578 PF13823 Alcohol dehydrogenase GroES-associated AMED_6580 PF00571 CBS domain AMED_6581 PF03600 Citrate transporter AMED_6582 PF00005 ABC transporter AMED_6583 PF12730 AMED_6583 AMED_6585 PF13489 Methyltransferase domain AMED_6587 PF01807 CHC2 zinc finger AMED_6587 PF08275 DNA primase catalytic core, N-terminal domain AMED_6587 PF08278 DNA primase DnaG DnaB-binding AMED_6587 PF10410 DnaB-helicase binding domain of primase AMED_6587 PF13662 Toprim domain AMED_6588 PF04542 Sigma-70 region 2 AMED_6588 PF08281 Sigma-70, region 4 AMED_6588 PF12680 SnoaL-like domain AMED_6590 PF02627 Carboxymuconolactone decarboxylase family AMED_6591 PF07690 Major Facilitator Superfamily AMED_6592 PF12802 MarR family AMED_6593 PF02627 Carboxymuconolactone decarboxylase family AMED_6594 PF00440 Bacterial regulatory proteins, tetR family AMED_6595 PF04978 Protein of unknown function (DUF664) AMED_6597 PF00079 Serpin (serine protease inhibitor) AMED_6598 PF01966 HD domain AMED_6598 PF13286 Phosphohydrolase-associated domain AMED_6599 PF02698 DUF218 domain AMED_6600 PF00072 Response regulator receiver domain AMED_6600 PF00196 Bacterial regulatory proteins, luxR family AMED_6601 PF07730 Histidine kinase AMED_6602 PF01061 AMED_6602 AMED_6603 PF00005 ABC transporter AMED_6604 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMED_6604 PF03129 Anticodon binding domain AMED_6605 PF04203 Sortase family AMED_6606 PF04203 Sortase family AMED_6608 PF01022 Bacterial regulatory protein, arsR family AMED_6609 PF01475 Ferric uptake regulator family AMED_6611 PF09323 AMED_6611 AMED_6612 PF03773 AMED_6612 AMED_6614 PF01255 Putative undecaprenyl diphosphate synthase AMED_6615 PF02565 Recombination protein O C terminal AMED_6615 PF11967 Recombination protein O N terminal AMED_6616 PF04505 AMED_6616 AMED_6617 PF06271 AMED_6617 AMED_6618 PF10825 AMED_6618 AMED_6619 PF04505 AMED_6619 AMED_6620 PF04505 AMED_6620 AMED_6621 PF01926 50S ribosome-binding GTPase AMED_6621 PF07650 KH domain AMED_6623 PF00571 CBS domain AMED_6623 PF01595 AMED_6623 AMED_6623 PF03471 Transporter associated domain AMED_6624 PF02130 Uncharacterized protein family UPF0054 AMED_6625 PF02562 PhoH-like protein AMED_6626 PF01230 HIT domain AMED_6627 PF04452 RNA methyltransferase AMED_6628 PF00226 DnaJ domain AMED_6628 PF00684 DnaJ central domain AMED_6628 PF01556 DnaJ C terminal domain AMED_6629 PF01628 HrcA protein C terminal domain AMED_6629 PF08220 DeoR-like helix-turn-helix domain AMED_6630 PF02575 YbaB/EbfC DNA-binding family AMED_6631 PF10824 Protein of unknown function (DUF2580) AMED_6634 PF00248 Aldo/keto reductase family AMED_6635 PF00171 Aldehyde dehydrogenase family AMED_6636 PF07905 AMED_6636 AMED_6636 PF13556 PucR C-terminal helix-turn-helix domain AMED_6637 PF00720 Subtilisin inhibitor-like AMED_6639 PF04149 AMED_6639 AMED_6640 PF13777 AMED_6640 AMED_6641 PF00512 His Kinase A (phospho-acceptor) domain AMED_6641 PF00672 HAMP domain AMED_6641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6642 PF00072 Response regulator receiver domain AMED_6642 PF00486 Transcriptional regulatory protein, C terminal AMED_6643 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMED_6644 PF00795 Carbon-nitrogen hydrolase AMED_6645 PF01979 Amidohydrolase family AMED_6646 PF00296 Luciferase-like monooxygenase AMED_6647 PF00561 alpha/beta hydrolase fold AMED_6647 PF08386 TAP-like protein AMED_6648 PF00144 Beta-lactamase AMED_6649 PF04954 Siderophore-interacting protein AMED_6649 PF08021 Siderophore-interacting FAD-binding domain AMED_6651 PF14534 Domain of unknown function (DUF4440) AMED_6652 PF00440 Bacterial regulatory proteins, tetR family AMED_6652 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_6653 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6653 PF13602 Zinc-binding dehydrogenase AMED_6654 PF04055 Radical SAM superfamily AMED_6655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_6656 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMED_6656 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMED_6658 PF01507 Phosphoadenosine phosphosulfate reductase family AMED_6659 PF01507 Phosphoadenosine phosphosulfate reductase family AMED_6660 PF00009 Elongation factor Tu GTP binding domain AMED_6661 PF01903 CbiX AMED_6663 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6665 PF11695 AMED_6665 AMED_6666 PF00378 Enoyl-CoA hydratase/isomerase family AMED_6667 PF01337 Barstar (barnase inhibitor) AMED_6668 PF00545 ribonuclease AMED_6670 PF00107 Zinc-binding dehydrogenase AMED_6670 PF08240 Alcohol dehydrogenase GroES-like domain AMED_6671 PF12697 Alpha/beta hydrolase family AMED_6672 PF13520 Amino acid permease AMED_6673 PF03060 Nitronate monooxygenase AMED_6674 PF12802 MarR family AMED_6675 PF00728 Glycosyl hydrolase family 20, catalytic domain AMED_6675 PF02838 Glycosyl hydrolase family 20, domain 2 AMED_6675 PF02839 Carbohydrate binding domain AMED_6676 PF13576 Pentapeptide repeats (9 copies) AMED_6677 PF01230 HIT domain AMED_6678 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_6680 PF05685 Putative restriction endonuclease AMED_6681 PF00009 Elongation factor Tu GTP binding domain AMED_6681 PF00679 Elongation factor G C-terminus AMED_6681 PF06421 GTP-binding protein LepA C-terminus AMED_6682 PF08241 Methyltransferase domain AMED_6683 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_6684 PF00892 EamA-like transporter family AMED_6685 PF01649 Ribosomal protein S20 AMED_6686 PF06144 DNA polymerase III, delta subunit AMED_6687 PF00291 Pyridoxal-phosphate dependent enzyme AMED_6688 PF14015 AMED_6688 AMED_6689 PF00753 Metallo-beta-lactamase superfamily AMED_6689 PF03772 AMED_6689 AMED_6689 PF13567 AMED_6689 AMED_6690 PF10531 SLBB domain AMED_6690 PF12836 Helix-hairpin-helix motif AMED_6691 PF02645 Uncharacterised protein, DegV family COG1307 AMED_6692 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_6693 PF00300 Histidine phosphatase superfamily (branch 1) AMED_6694 PF02410 Oligomerisation domain AMED_6695 PF01467 Cytidylyltransferase AMED_6696 PF00270 DEAD/DEAH box helicase AMED_6696 PF00271 Helicase conserved C-terminal domain AMED_6696 PF16124 AMED_6696 AMED_6697 PF07690 Major Facilitator Superfamily AMED_6698 PF00750 tRNA synthetases class I (R) AMED_6698 PF03485 Arginyl tRNA synthetase N terminal domain AMED_6698 PF05746 DALR anticodon binding domain AMED_6699 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_6700 PF03992 Antibiotic biosynthesis monooxygenase AMED_6701 PF00440 Bacterial regulatory proteins, tetR family AMED_6701 PF16859 AMED_6701 AMED_6702 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_6703 PF00696 Amino acid kinase family AMED_6703 PF01472 PUA domain AMED_6704 PF01018 GTP1/OBG AMED_6704 PF01926 50S ribosome-binding GTPase AMED_6704 PF09269 Domain of unknown function (DUF1967) AMED_6705 PF01016 Ribosomal L27 protein AMED_6706 PF00829 Ribosomal prokaryotic L21 protein AMED_6707 PF04760 Translation initiation factor IF-2, N-terminal region AMED_6707 PF10150 Ribonuclease E/G family AMED_6708 PF00082 Subtilase family AMED_6709 PF01061 AMED_6709 AMED_6710 PF01061 AMED_6710 AMED_6711 PF00005 ABC transporter AMED_6712 PF00149 Calcineurin-like phosphoesterase AMED_6712 PF09992 Predicted periplasmic protein (DUF2233) AMED_6713 PF07398 AMED_6713 AMED_6713 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_6714 PF00334 Nucleoside diphosphate kinase AMED_6715 PF09423 PhoD-like phosphatase AMED_6715 PF16655 AMED_6715 AMED_6716 PF01804 Penicillin amidase AMED_6717 PF14017 AMED_6717 AMED_6718 PF02875 Mur ligase family, glutamate ligase domain AMED_6718 PF08245 Mur ligase middle domain AMED_6719 PF08241 Methyltransferase domain AMED_6720 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_6721 PF00561 alpha/beta hydrolase fold AMED_6722 PF12697 Alpha/beta hydrolase family AMED_6723 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6723 PF03466 LysR substrate binding domain AMED_6724 PF00133 tRNA synthetases class I (I, L, M and V) AMED_6724 PF08264 Anticodon-binding domain of tRNA AMED_6724 PF10458 Valyl tRNA synthetase tRNA binding arm AMED_6726 PF12802 MarR family AMED_6727 PF07690 Major Facilitator Superfamily AMED_6728 PF00384 Molybdopterin oxidoreductase AMED_6728 PF01568 Molydopterin dinucleotide binding domain AMED_6730 PF03816 Cell envelope-related transcriptional attenuator domain AMED_6730 PF13399 LytR cell envelope-related transcriptional attenuator AMED_6732 PF07690 Major Facilitator Superfamily AMED_6733 PF02634 FdhD/NarQ family AMED_6734 PF03055 Retinal pigment epithelial membrane protein AMED_6735 PF00440 Bacterial regulatory proteins, tetR family AMED_6735 PF13305 WHG domain AMED_6736 PF00756 Putative esterase AMED_6737 PF13581 Histidine kinase-like ATPase domain AMED_6737 PF14417 AMED_6737 AMED_6739 PF06689 ClpX C4-type zinc finger AMED_6739 PF07724 AAA domain (Cdc48 subfamily) AMED_6739 PF10431 C-terminal, D2-small domain, of ClpB protein AMED_6740 PF00574 Clp protease AMED_6741 PF00574 Clp protease AMED_6742 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMED_6742 PF05697 Bacterial trigger factor protein (TF) AMED_6742 PF05698 Bacterial trigger factor protein (TF) C-terminus AMED_6743 PF00440 Bacterial regulatory proteins, tetR family AMED_6744 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_6744 PF00175 Oxidoreductase NAD-binding domain AMED_6744 PF00487 AMED_6744 AMED_6744 PF00970 Oxidoreductase FAD-binding domain AMED_6746 PF00512 His Kinase A (phospho-acceptor) domain AMED_6746 PF00672 HAMP domain AMED_6746 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6747 PF13231 AMED_6747 AMED_6749 PF13560 Helix-turn-helix domain AMED_6750 PF00586 AIR synthase related protein, N-terminal domain AMED_6750 PF02769 AIR synthase related protein, C-terminal domain AMED_6751 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) AMED_6753 PF13560 Helix-turn-helix domain AMED_6755 PF00027 Cyclic nucleotide-binding domain AMED_6755 PF13545 Crp-like helix-turn-helix domain AMED_6758 PF00535 Glycosyl transferase family 2 AMED_6758 PF04138 AMED_6758 AMED_6759 PF13231 AMED_6759 AMED_6761 PF13577 SnoaL-like domain AMED_6762 PF00486 Transcriptional regulatory protein, C terminal AMED_6762 PF03704 Bacterial transcriptional activator domain AMED_6764 PF09900 AMED_6764 AMED_6768 PF13424 Tetratricopeptide repeat AMED_6769 PF07971 Glycosyl hydrolase family 92 AMED_6770 PF07969 Amidohydrolase family AMED_6772 PF00005 ABC transporter AMED_6773 PF00440 Bacterial regulatory proteins, tetR family AMED_6774 PF00082 Subtilase family AMED_6775 PF00480 ROK family AMED_6775 PF12802 MarR family AMED_6776 PF01261 Xylose isomerase-like TIM barrel AMED_6777 PF06283 Trehalose utilisation AMED_6778 PF01047 MarR family AMED_6779 PF07690 Major Facilitator Superfamily AMED_6780 PF00248 Aldo/keto reductase family AMED_6781 PF04672 S-adenosyl methyltransferase AMED_6783 PF12728 Helix-turn-helix domain AMED_6785 PF01965 DJ-1/PfpI family AMED_6786 PF07228 Stage II sporulation protein E (SpoIIE) AMED_6787 PF00072 Response regulator receiver domain AMED_6787 PF00512 His Kinase A (phospho-acceptor) domain AMED_6787 PF00672 HAMP domain AMED_6787 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6787 PF13185 GAF domain AMED_6789 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AMED_6790 PF08443 RimK-like ATP-grasp domain AMED_6792 PF13560 Helix-turn-helix domain AMED_6793 PF12710 haloacid dehalogenase-like hydrolase AMED_6794 PF01370 NAD dependent epimerase/dehydratase family AMED_6795 PF03807 NADP oxidoreductase coenzyme F420-dependent AMED_6796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6796 PF03466 LysR substrate binding domain AMED_6797 PF00440 Bacterial regulatory proteins, tetR family AMED_6798 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_6799 PF03807 NADP oxidoreductase coenzyme F420-dependent AMED_6800 PF00296 Luciferase-like monooxygenase AMED_6802 PF13460 NADH(P)-binding AMED_6803 PF01638 HxlR-like helix-turn-helix AMED_6804 PF03422 Carbohydrate binding module (family 6) AMED_6804 PF16499 AMED_6804 AMED_6805 PF12680 SnoaL-like domain AMED_6806 PF00296 Luciferase-like monooxygenase AMED_6808 PF00440 Bacterial regulatory proteins, tetR family AMED_6809 PF00118 TCP-1/cpn60 chaperonin family AMED_6810 PF06827 Zinc finger found in FPG and IleRS AMED_6810 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMED_6811 PF02502 Ribose/Galactose Isomerase AMED_6813 PF00753 Metallo-beta-lactamase superfamily AMED_6814 PF01323 DSBA-like thioredoxin domain AMED_6815 PF01433 Peptidase family M1 AMED_6815 PF11838 ERAP1-like C-terminal domain AMED_6817 PF17174 AMED_6817 AMED_6820 PF14279 AMED_6820 AMED_6821 PF00924 Mechanosensitive ion channel AMED_6822 PF01152 Bacterial-like globin AMED_6823 PF00128 Alpha amylase, catalytic domain AMED_6823 PF11941 Domain of unknown function (DUF3459) AMED_6826 PF13279 Thioesterase-like superfamily AMED_6827 PF05088 AMED_6827 AMED_6829 PF00005 ABC transporter AMED_6829 PF12848 ABC transporter AMED_6830 PF05425 AMED_6830 AMED_6830 PF09678 AMED_6830 AMED_6831 PF00300 Histidine phosphatase superfamily (branch 1) AMED_6832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6833 PF07690 Major Facilitator Superfamily AMED_6834 PF03995 Peptidase inhibitor family I36 AMED_6836 PF00202 Aminotransferase class-III AMED_6837 PF00732 GMC oxidoreductase AMED_6837 PF05199 GMC oxidoreductase AMED_6838 PF13520 Amino acid permease AMED_6840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_6840 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_6841 PF00732 GMC oxidoreductase AMED_6841 PF05199 GMC oxidoreductase AMED_6842 PF13474 SnoaL-like domain AMED_6843 PF13474 SnoaL-like domain AMED_6844 PF00578 AhpC/TSA family AMED_6845 PF13474 SnoaL-like domain AMED_6846 PF13474 SnoaL-like domain AMED_6847 PF05988 AMED_6847 AMED_6848 PF00171 Aldehyde dehydrogenase family AMED_6849 PF07690 Major Facilitator Superfamily AMED_6850 PF06441 Epoxide hydrolase N terminus AMED_6851 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_6851 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_6852 PF02627 Carboxymuconolactone decarboxylase family AMED_6854 PF13454 FAD-NAD(P)-binding AMED_6859 PF01039 Carboxyl transferase domain AMED_6861 PF01370 NAD dependent epimerase/dehydratase family AMED_6862 PF01613 Flavin reductase like domain AMED_6863 PF13279 Thioesterase-like superfamily AMED_6864 PF00109 Beta-ketoacyl synthase, N-terminal domain AMED_6864 PF00698 Acyl transferase domain AMED_6864 PF02801 Beta-ketoacyl synthase, C-terminal domain AMED_6864 PF08659 KR domain AMED_6864 PF14765 Polyketide synthase dehydratase AMED_6865 PF08608 Wyosine base formation AMED_6865 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_6866 PF02627 Carboxymuconolactone decarboxylase family AMED_6867 PF00732 GMC oxidoreductase AMED_6867 PF05199 GMC oxidoreductase AMED_6869 PF00067 Cytochrome P450 AMED_6871 PF07593 AMED_6871 AMED_6871 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AMED_6872 PF08012 AMED_6872 AMED_6873 PF08012 AMED_6873 AMED_6874 PF12833 Helix-turn-helix domain AMED_6875 PF00486 Transcriptional regulatory protein, C terminal AMED_6875 PF03704 Bacterial transcriptional activator domain AMED_6876 PF01638 HxlR-like helix-turn-helix AMED_6877 PF04542 Sigma-70 region 2 AMED_6877 PF08281 Sigma-70, region 4 AMED_6878 PF03795 YCII-related domain AMED_6880 PF01300 Telomere recombination AMED_6881 PF05988 AMED_6881 AMED_6882 PF07730 Histidine kinase AMED_6883 PF00072 Response regulator receiver domain AMED_6883 PF00196 Bacterial regulatory proteins, luxR family AMED_6885 PF12833 Helix-turn-helix domain AMED_6886 PF00072 Response regulator receiver domain AMED_6886 PF00196 Bacterial regulatory proteins, luxR family AMED_6887 PF07730 Histidine kinase AMED_6889 PF00899 ThiF family AMED_6889 PF02624 YcaO-like family AMED_6890 PF01638 HxlR-like helix-turn-helix AMED_6892 PF04234 CopC domain AMED_6892 PF05425 AMED_6892 AMED_6895 PF02517 CAAX protease self-immunity AMED_6896 PF02583 Metal-sensitive transcriptional repressor AMED_6897 PF00122 E1-E2 ATPase AMED_6897 PF00403 Heavy-metal-associated domain AMED_6897 PF00702 haloacid dehalogenase-like hydrolase AMED_6898 PF00403 Heavy-metal-associated domain AMED_6899 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_6900 PF00561 alpha/beta hydrolase fold AMED_6901 PF00106 short chain dehydrogenase AMED_6902 PF14099 Polysaccharide lyase AMED_6904 PF04055 Radical SAM superfamily AMED_6905 PF14016 AMED_6905 AMED_6908 PF00755 Choline/Carnitine o-acyltransferase AMED_6909 PF07859 alpha/beta hydrolase fold AMED_6910 PF08241 Methyltransferase domain AMED_6911 PF00754 F5/8 type C domain AMED_6911 PF12708 Pectate lyase superfamily protein AMED_6912 PF00754 F5/8 type C domain AMED_6912 PF05048 Periplasmic copper-binding protein (NosD) AMED_6913 PF00072 Response regulator receiver domain AMED_6913 PF00486 Transcriptional regulatory protein, C terminal AMED_6914 PF00512 His Kinase A (phospho-acceptor) domain AMED_6914 PF00672 HAMP domain AMED_6914 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_6916 PF00356 Bacterial regulatory proteins, lacI family AMED_6916 PF13377 Periplasmic binding protein-like domain AMED_6917 PF01547 Bacterial extracellular solute-binding protein AMED_6918 PF00528 Binding-protein-dependent transport system inner membrane component AMED_6919 PF00528 Binding-protein-dependent transport system inner membrane component AMED_6920 PF00128 Alpha amylase, catalytic domain AMED_6921 PF00931 NB-ARC domain AMED_6921 PF13424 Tetratricopeptide repeat AMED_6922 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMED_6922 PF13471 AMED_6922 AMED_6923 PF00733 Asparagine synthase AMED_6925 PF00480 ROK family AMED_6925 PF13412 Winged helix-turn-helix DNA-binding AMED_6927 PF08309 AMED_6927 AMED_6928 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_6929 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6929 PF03466 LysR substrate binding domain AMED_6930 PF01370 NAD dependent epimerase/dehydratase family AMED_6931 PF00106 short chain dehydrogenase AMED_6932 PF00082 Subtilase family AMED_6933 PF13673 Acetyltransferase (GNAT) domain AMED_6934 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMED_6934 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_6935 PF01553 Acyltransferase AMED_6936 PF04075 Domain of unknown function (DUF385) AMED_6937 PF00356 Bacterial regulatory proteins, lacI family AMED_6937 PF13377 Periplasmic binding protein-like domain AMED_6938 PF06187 Protein of unknown function (DUF993) AMED_6939 PF01261 Xylose isomerase-like TIM barrel AMED_6940 PF01614 Bacterial transcriptional regulator AMED_6940 PF09339 IclR helix-turn-helix domain AMED_6941 PF00072 Response regulator receiver domain AMED_6941 PF00486 Transcriptional regulatory protein, C terminal AMED_6942 PF00512 His Kinase A (phospho-acceptor) domain AMED_6942 PF00672 HAMP domain AMED_6944 PF13520 Amino acid permease AMED_6945 PF00795 Carbon-nitrogen hydrolase AMED_6946 PF01593 Flavin containing amine oxidoreductase AMED_6947 PF00440 Bacterial regulatory proteins, tetR family AMED_6948 PF00440 Bacterial regulatory proteins, tetR family AMED_6948 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_6949 PF00561 alpha/beta hydrolase fold AMED_6951 PF13556 PucR C-terminal helix-turn-helix domain AMED_6952 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_6953 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_6954 PF00296 Luciferase-like monooxygenase AMED_6955 PF00108 Thiolase, N-terminal domain AMED_6955 PF02803 Thiolase, C-terminal domain AMED_6956 PF00501 AMP-binding enzyme AMED_6956 PF13193 AMP-binding enzyme C-terminal domain AMED_6957 PF03055 Retinal pigment epithelial membrane protein AMED_6958 PF01638 HxlR-like helix-turn-helix AMED_6960 PF13483 Beta-lactamase superfamily domain AMED_6961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_6961 PF03466 LysR substrate binding domain AMED_6962 PF13354 Beta-lactamase enzyme family AMED_6963 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMED_6963 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMED_6965 PF03301 Tryptophan 2,3-dioxygenase AMED_6966 PF07848 PaaX-like protein AMED_6966 PF08223 PaaX-like protein C-terminal domain AMED_6967 PF02633 Creatinine amidohydrolase AMED_6968 PF00501 AMP-binding enzyme AMED_6968 PF13193 AMP-binding enzyme C-terminal domain AMED_6969 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_6970 PF00378 Enoyl-CoA hydratase/isomerase family AMED_6971 PF07969 Amidohydrolase family AMED_6972 PF13191 AAA ATPase domain AMED_6974 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_6975 PF03088 Strictosidine synthase AMED_6976 PF00300 Histidine phosphatase superfamily (branch 1) AMED_6977 PF01636 Phosphotransferase enzyme family AMED_6978 PF00106 short chain dehydrogenase AMED_6980 PF00196 Bacterial regulatory proteins, luxR family AMED_6981 PF14534 Domain of unknown function (DUF4440) AMED_6982 PF00501 AMP-binding enzyme AMED_6982 PF13193 AMP-binding enzyme C-terminal domain AMED_6983 PF00476 DNA polymerase family A AMED_6985 PF00270 DEAD/DEAH box helicase AMED_6985 PF00271 Helicase conserved C-terminal domain AMED_6985 PF04408 Helicase associated domain (HA2) AMED_6985 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMED_6985 PF11898 AMED_6985 AMED_6987 PF01070 FMN-dependent dehydrogenase AMED_6988 PF03435 Saccharopine dehydrogenase AMED_6989 PF13738 Pyridine nucleotide-disulphide oxidoreductase AMED_6990 PF00440 Bacterial regulatory proteins, tetR family AMED_6990 PF13977 Bacterial transcriptional repressor AMED_6991 PF01374 Glycosyl hydrolase family 46 AMED_6992 PF14716 Helix-hairpin-helix domain AMED_6993 PF12850 Calcineurin-like phosphoesterase superfamily domain AMED_6994 PF00392 Bacterial regulatory proteins, gntR family AMED_6994 PF07729 FCD domain AMED_6995 PF00920 Dehydratase family AMED_6996 PF04294 AMED_6996 AMED_6996 PF12229 Putative peptidoglycan binding domain AMED_6997 PF07690 Major Facilitator Superfamily AMED_6999 PF00990 GGDEF domain AMED_7001 PF00291 Pyridoxal-phosphate dependent enzyme AMED_7002 PF01738 Dienelactone hydrolase family AMED_7004 PF04542 Sigma-70 region 2 AMED_7004 PF08281 Sigma-70, region 4 AMED_7005 PF03795 YCII-related domain AMED_7008 PF01176 Translation initiation factor 1A / IF-1 AMED_7009 PF00583 Acetyltransferase (GNAT) family AMED_7011 PF00155 Aminotransferase class I and II AMED_7011 PF00392 Bacterial regulatory proteins, gntR family AMED_7012 PF07690 Major Facilitator Superfamily AMED_7013 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_7013 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMED_7014 PF02585 GlcNAc-PI de-N-acetylase AMED_7015 PF01008 Initiation factor 2 subunit family AMED_7018 PF00067 Cytochrome P450 AMED_7019 PF03551 Transcriptional regulator PadR-like family AMED_7020 PF00067 Cytochrome P450 AMED_7021 PF13370 4Fe-4S single cluster domain AMED_7022 PF00440 Bacterial regulatory proteins, tetR family AMED_7023 PF01565 FAD binding domain AMED_7023 PF02913 FAD linked oxidases, C-terminal domain AMED_7023 PF13183 4Fe-4S dicluster domain AMED_7024 PF07730 Histidine kinase AMED_7024 PF13185 GAF domain AMED_7025 PF00072 Response regulator receiver domain AMED_7025 PF00196 Bacterial regulatory proteins, luxR family AMED_7026 PF02811 PHP domain AMED_7027 PF00005 ABC transporter AMED_7028 PF00005 ABC transporter AMED_7028 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMED_7029 PF02653 AMED_7029 AMED_7030 PF02653 AMED_7030 AMED_7031 PF13458 Periplasmic binding protein AMED_7033 PF13302 Acetyltransferase (GNAT) domain AMED_7034 PF00754 F5/8 type C domain AMED_7034 PF07971 Glycosyl hydrolase family 92 AMED_7035 PF01205 Uncharacterized protein family UPF0029 AMED_7035 PF09186 Domain of unknown function (DUF1949) AMED_7036 PF00310 Glutamine amidotransferases class-II AMED_7036 PF01493 GXGXG motif AMED_7036 PF01645 Conserved region in glutamate synthase AMED_7036 PF04898 Glutamate synthase central domain AMED_7037 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7037 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMED_7038 PF01370 NAD dependent epimerase/dehydratase family AMED_7039 PF00440 Bacterial regulatory proteins, tetR family AMED_7041 PF00480 ROK family AMED_7042 PF09489 AMED_7042 AMED_7043 PF09490 AMED_7043 AMED_7044 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_7044 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMED_7045 PF03186 AMED_7045 AMED_7046 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMED_7047 PF02277 Phosphoribosyltransferase AMED_7048 PF02654 AMED_7048 AMED_7049 PF08279 HTH domain AMED_7049 PF13280 AMED_7049 AMED_7050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_7051 PF00155 Aminotransferase class I and II AMED_7052 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_7052 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMED_7053 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMED_7054 PF01078 Magnesium chelatase, subunit ChlI AMED_7054 PF13519 von Willebrand factor type A domain AMED_7055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_7056 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_7057 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_7058 PF02571 AMED_7058 AMED_7059 PF00881 Nitroreductase family AMED_7060 PF04602 Mycobacterial cell wall arabinan synthesis protein AMED_7060 PF14896 EmbC C-terminal domain AMED_7061 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_7062 PF02570 Precorrin-8X methylmutase AMED_7063 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMED_7065 PF00005 ABC transporter AMED_7066 PF01061 AMED_7066 AMED_7067 PF01381 Helix-turn-helix AMED_7069 PF02514 AMED_7069 AMED_7070 PF02839 Carbohydrate binding domain AMED_7071 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMED_7071 PF01872 RibD C-terminal domain AMED_7074 PF00171 Aldehyde dehydrogenase family AMED_7075 PF13398 Peptidase M50B-like AMED_7076 PF13546 AMED_7076 AMED_7078 PF07687 Peptidase dimerisation domain AMED_7079 PF13365 Trypsin-like peptidase domain AMED_7080 PF11528 Protein of unknown function (DUF3224) AMED_7081 PF05872 AMED_7081 AMED_7082 PF00929 Exonuclease AMED_7083 PF07690 Major Facilitator Superfamily AMED_7084 PF03734 L,D-transpeptidase catalytic domain AMED_7085 PF00589 Phage integrase family AMED_7087 PF01555 DNA methylase AMED_7089 PF03704 Bacterial transcriptional activator domain AMED_7090 PF13400 AMED_7090 AMED_7096 PF00437 Type II/IV secretion system protein AMED_7098 PF08666 SAF domain AMED_7101 PF01494 FAD binding domain AMED_7105 PF01638 HxlR-like helix-turn-helix AMED_7106 PF01478 Type IV leader peptidase family AMED_7107 PF04149 AMED_7107 AMED_7110 PF13518 Helix-turn-helix domain AMED_7110 PF13560 Helix-turn-helix domain AMED_7112 PF13560 Helix-turn-helix domain AMED_7115 PF00293 NUDIX domain AMED_7116 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMED_7120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7120 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7121 PF00107 Zinc-binding dehydrogenase AMED_7121 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7122 PF00676 Dehydrogenase E1 component AMED_7122 PF02779 Transketolase, pyrimidine binding domain AMED_7122 PF02780 Transketolase, C-terminal domain AMED_7123 PF00501 AMP-binding enzyme AMED_7123 PF13193 AMP-binding enzyme C-terminal domain AMED_7124 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7125 PF00378 Enoyl-CoA hydratase/isomerase family AMED_7126 PF04199 Putative cyclase AMED_7129 PF07690 Major Facilitator Superfamily AMED_7130 PF01613 Flavin reductase like domain AMED_7131 PF03328 HpcH/HpaI aldolase/citrate lyase family AMED_7132 PF00296 Luciferase-like monooxygenase AMED_7133 PF00392 Bacterial regulatory proteins, gntR family AMED_7133 PF07729 FCD domain AMED_7134 PF00171 Aldehyde dehydrogenase family AMED_7135 PF02515 CoA-transferase family III AMED_7135 PF13577 SnoaL-like domain AMED_7136 PF13577 SnoaL-like domain AMED_7137 PF04199 Putative cyclase AMED_7138 PF00106 short chain dehydrogenase AMED_7139 PF13738 Pyridine nucleotide-disulphide oxidoreductase AMED_7141 PF00067 Cytochrome P450 AMED_7142 PF13370 4Fe-4S single cluster domain AMED_7143 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7143 PF14759 Reductase C-terminal AMED_7144 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7145 PF02627 Carboxymuconolactone decarboxylase family AMED_7146 PF13577 SnoaL-like domain AMED_7147 PF00440 Bacterial regulatory proteins, tetR family AMED_7148 PF00440 Bacterial regulatory proteins, tetR family AMED_7149 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7149 PF13602 Zinc-binding dehydrogenase AMED_7150 PF13564 AMED_7150 AMED_7151 PF00296 Luciferase-like monooxygenase AMED_7152 PF13460 NADH(P)-binding AMED_7154 PF00005 ABC transporter AMED_7155 PF00005 ABC transporter AMED_7155 PF02653 AMED_7155 AMED_7155 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMED_7156 PF13458 Periplasmic binding protein AMED_7158 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7158 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7158 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7159 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7159 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7160 PF00106 short chain dehydrogenase AMED_7161 PF00392 Bacterial regulatory proteins, gntR family AMED_7161 PF07729 FCD domain AMED_7162 PF13452 N-terminal half of MaoC dehydratase AMED_7163 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7164 PF00107 Zinc-binding dehydrogenase AMED_7164 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7165 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7166 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7166 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7167 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_7168 PF00067 Cytochrome P450 AMED_7169 PF00378 Enoyl-CoA hydratase/isomerase family AMED_7170 PF01636 Phosphotransferase enzyme family AMED_7171 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7171 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7171 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7172 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7173 PF00805 Pentapeptide repeats (8 copies) AMED_7174 PF02515 CoA-transferase family III AMED_7175 PF13459 4Fe-4S single cluster domain AMED_7176 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_7177 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7179 PF04909 Amidohydrolase AMED_7180 PF01796 AMED_7180 AMED_7180 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) AMED_7182 PF00890 FAD binding domain AMED_7183 PF01614 Bacterial transcriptional regulator AMED_7183 PF09339 IclR helix-turn-helix domain AMED_7184 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_7185 PF00561 alpha/beta hydrolase fold AMED_7186 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_7187 PF01613 Flavin reductase like domain AMED_7188 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7189 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_7190 PF00108 Thiolase, N-terminal domain AMED_7190 PF02803 Thiolase, C-terminal domain AMED_7191 PF02515 CoA-transferase family III AMED_7192 PF00378 Enoyl-CoA hydratase/isomerase family AMED_7193 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7193 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7193 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7194 PF00106 short chain dehydrogenase AMED_7195 PF00501 AMP-binding enzyme AMED_7195 PF13193 AMP-binding enzyme C-terminal domain AMED_7197 PF00501 AMP-binding enzyme AMED_7197 PF13193 AMP-binding enzyme C-terminal domain AMED_7198 PF07681 AMED_7198 AMED_7199 PF00378 Enoyl-CoA hydratase/isomerase family AMED_7200 PF00108 Thiolase, N-terminal domain AMED_7200 PF02803 Thiolase, C-terminal domain AMED_7201 PF00378 Enoyl-CoA hydratase/isomerase family AMED_7202 PF00296 Luciferase-like monooxygenase AMED_7203 PF07969 Amidohydrolase family AMED_7204 PF02515 CoA-transferase family III AMED_7205 PF00378 Enoyl-CoA hydratase/isomerase family AMED_7207 PF00809 Pterin binding enzyme AMED_7208 PF04909 Amidohydrolase AMED_7209 PF00171 Aldehyde dehydrogenase family AMED_7210 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMED_7210 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_7211 PF00067 Cytochrome P450 AMED_7212 PF13370 4Fe-4S single cluster domain AMED_7213 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7213 PF14759 Reductase C-terminal AMED_7214 PF02627 Carboxymuconolactone decarboxylase family AMED_7214 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7215 PF13450 NAD(P)-binding Rossmann-like domain AMED_7216 PF00743 Flavin-binding monooxygenase-like AMED_7218 PF13577 SnoaL-like domain AMED_7219 PF13577 SnoaL-like domain AMED_7220 PF00857 Isochorismatase family AMED_7223 PF00440 Bacterial regulatory proteins, tetR family AMED_7226 PF00676 Dehydrogenase E1 component AMED_7227 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7228 PF00067 Cytochrome P450 AMED_7229 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7229 PF14759 Reductase C-terminal AMED_7230 PF13370 4Fe-4S single cluster domain AMED_7231 PF00107 Zinc-binding dehydrogenase AMED_7231 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7233 PF07730 Histidine kinase AMED_7234 PF00072 Response regulator receiver domain AMED_7234 PF00196 Bacterial regulatory proteins, luxR family AMED_7235 PF00501 AMP-binding enzyme AMED_7236 PF00501 AMP-binding enzyme AMED_7237 PF13556 PucR C-terminal helix-turn-helix domain AMED_7238 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_7238 PF13378 Enolase C-terminal domain-like AMED_7239 PF07690 Major Facilitator Superfamily AMED_7240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_7240 PF03466 LysR substrate binding domain AMED_7241 PF01638 HxlR-like helix-turn-helix AMED_7242 PF01323 DSBA-like thioredoxin domain AMED_7244 PF13460 NADH(P)-binding AMED_7245 PF13556 PucR C-terminal helix-turn-helix domain AMED_7246 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_7247 PF07690 Major Facilitator Superfamily AMED_7248 PF00753 Metallo-beta-lactamase superfamily AMED_7249 PF06439 Domain of Unknown Function (DUF1080) AMED_7250 PF01261 Xylose isomerase-like TIM barrel AMED_7250 PF07582 AP endonuclease family 2 C terminus AMED_7251 PF01261 Xylose isomerase-like TIM barrel AMED_7253 PF03928 Domain of unknown function (DUF336) AMED_7254 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_7255 PF07690 Major Facilitator Superfamily AMED_7256 PF00356 Bacterial regulatory proteins, lacI family AMED_7256 PF13377 Periplasmic binding protein-like domain AMED_7257 PF13416 Bacterial extracellular solute-binding protein AMED_7258 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7259 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7260 PF14871 AMED_7260 AMED_7261 PF12697 Alpha/beta hydrolase family AMED_7262 PF00392 Bacterial regulatory proteins, gntR family AMED_7262 PF07729 FCD domain AMED_7263 PF00561 alpha/beta hydrolase fold AMED_7264 PF08532 Beta-galactosidase trimerisation domain AMED_7264 PF14871 AMED_7264 AMED_7266 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMED_7266 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMED_7267 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_7267 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_7267 PF14310 Fibronectin type III-like domain AMED_7268 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_7269 PF02558 Ketopantoate reductase PanE/ApbA AMED_7269 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMED_7270 PF00378 Enoyl-CoA hydratase/isomerase family AMED_7271 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMED_7271 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMED_7272 PF04909 Amidohydrolase AMED_7273 PF02627 Carboxymuconolactone decarboxylase family AMED_7274 PF02515 CoA-transferase family III AMED_7275 PF13417 Glutathione S-transferase, N-terminal domain AMED_7276 PF00392 Bacterial regulatory proteins, gntR family AMED_7276 PF07702 UTRA domain AMED_7277 PF07690 Major Facilitator Superfamily AMED_7278 PF05681 AMED_7278 AMED_7279 PF05683 Fumarase C-terminus AMED_7280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_7280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_7282 PF02384 N-6 DNA Methylase AMED_7290 PF14386 AMED_7290 AMED_7291 PF02195 ParB-like nuclease domain AMED_7292 PF13814 AMED_7292 AMED_7294 PF11774 Lsr2 AMED_7297 PF00415 Regulator of chromosome condensation (RCC1) repeat AMED_7297 PF05593 AMED_7297 AMED_7298 PF00877 NlpC/P60 family AMED_7298 PF01464 Transglycosylase SLT domain AMED_7300 PF12846 AAA-like domain AMED_7303 PF12642 Conjugative transposon protein TcpC AMED_7313 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_7315 PF00809 Pterin binding enzyme AMED_7316 PF01717 Cobalamin-independent synthase, Catalytic domain AMED_7317 PF08305 NPCBM/NEW2 domain AMED_7323 PF01381 Helix-turn-helix AMED_7323 PF06114 Domain of unknown function (DUF955) AMED_7324 PF00665 Integrase core domain AMED_7324 PF13276 AMED_7324 AMED_7325 PF01527 Transposase AMED_7326 PF00440 Bacterial regulatory proteins, tetR family AMED_7327 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_7328 PF13460 NADH(P)-binding AMED_7329 PF12840 Helix-turn-helix domain AMED_7331 PF13460 NADH(P)-binding AMED_7332 PF14534 Domain of unknown function (DUF4440) AMED_7336 PF00296 Luciferase-like monooxygenase AMED_7337 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7338 PF02805 Metal binding domain of Ada AMED_7338 PF12833 Helix-turn-helix domain AMED_7339 PF00067 Cytochrome P450 AMED_7340 PF04542 Sigma-70 region 2 AMED_7340 PF08281 Sigma-70, region 4 AMED_7341 PF01565 FAD binding domain AMED_7341 PF08031 Berberine and berberine like AMED_7342 PF00296 Luciferase-like monooxygenase AMED_7343 PF01872 RibD C-terminal domain AMED_7344 PF07690 Major Facilitator Superfamily AMED_7348 PF13855 Leucine rich repeat AMED_7349 PF05593 AMED_7349 AMED_7349 PF07591 Pretoxin HINT domain AMED_7350 PF13385 Concanavalin A-like lectin/glucanases superfamily AMED_7352 PF13489 Methyltransferase domain AMED_7353 PF00144 Beta-lactamase AMED_7354 PF00440 Bacterial regulatory proteins, tetR family AMED_7355 PF12833 Helix-turn-helix domain AMED_7355 PF12852 Cupin AMED_7356 PF13460 NADH(P)-binding AMED_7357 PF00156 Phosphoribosyl transferase domain AMED_7358 PF07411 Domain of unknown function (DUF1508) AMED_7359 PF12849 PBP superfamily domain AMED_7360 PF04203 Sortase family AMED_7362 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7363 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7364 PF00005 ABC transporter AMED_7365 PF12849 PBP superfamily domain AMED_7367 PF12849 PBP superfamily domain AMED_7368 PF00440 Bacterial regulatory proteins, tetR family AMED_7369 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7369 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMED_7371 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_7373 PF01425 Amidase AMED_7375 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7376 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_7376 PF03466 LysR substrate binding domain AMED_7377 PF00703 Glycosyl hydrolases family 2 AMED_7377 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_7377 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_7377 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_7379 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_7379 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_7379 PF14310 Fibronectin type III-like domain AMED_7380 PF01370 NAD dependent epimerase/dehydratase family AMED_7380 PF08338 Domain of unknown function (DUF1731) AMED_7381 PF02148 Zn-finger in ubiquitin-hydrolases and other protein AMED_7382 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_7383 PF01061 AMED_7383 AMED_7384 PF00005 ABC transporter AMED_7385 PF00041 Fibronectin type III domain AMED_7385 PF00553 Cellulose binding domain AMED_7385 PF00759 Glycosyl hydrolase family 9 AMED_7385 PF02018 Carbohydrate binding domain AMED_7385 PF02927 N-terminal ig-like domain of cellulase AMED_7386 PF00652 Ricin-type beta-trefoil lectin domain AMED_7386 PF16499 AMED_7386 AMED_7389 PF03861 ANTAR domain AMED_7393 PF01522 Polysaccharide deacetylase AMED_7394 PF04932 AMED_7394 AMED_7395 PF13439 Glycosyltransferase Family 4 AMED_7395 PF13692 Glycosyl transferases group 1 AMED_7397 PF09594 AMED_7397 AMED_7398 PF13440 AMED_7398 AMED_7399 PF13439 Glycosyltransferase Family 4 AMED_7399 PF13692 Glycosyl transferases group 1 AMED_7400 PF13439 Glycosyltransferase Family 4 AMED_7400 PF13692 Glycosyl transferases group 1 AMED_7401 PF14885 AMED_7401 AMED_7402 PF02397 AMED_7402 AMED_7403 PF00535 Glycosyl transferase family 2 AMED_7404 PF01593 Flavin containing amine oxidoreductase AMED_7405 PF02350 UDP-N-acetylglucosamine 2-epimerase AMED_7406 PF01186 AMED_7406 AMED_7407 PF14417 AMED_7407 AMED_7408 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_7409 PF13229 Right handed beta helix region AMED_7410 PF00703 Glycosyl hydrolases family 2 AMED_7410 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_7410 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_7412 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_7413 PF00041 Fibronectin type III domain AMED_7413 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_7413 PF00553 Cellulose binding domain AMED_7413 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_7414 PF07745 Glycosyl hydrolase family 53 AMED_7415 PF00356 Bacterial regulatory proteins, lacI family AMED_7415 PF13377 Periplasmic binding protein-like domain AMED_7417 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7418 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7419 PF01547 Bacterial extracellular solute-binding protein AMED_7421 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_7423 PF13466 STAS domain AMED_7425 PF00440 Bacterial regulatory proteins, tetR family AMED_7425 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_7426 PF12697 Alpha/beta hydrolase family AMED_7427 PF07228 Stage II sporulation protein E (SpoIIE) AMED_7428 PF13466 STAS domain AMED_7429 PF00701 Dihydrodipicolinate synthetase family AMED_7430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_7430 PF03466 LysR substrate binding domain AMED_7431 PF13649 Methyltransferase domain AMED_7433 PF01380 SIS domain AMED_7433 PF13522 Glutamine amidotransferase domain AMED_7434 PF15892 AMED_7434 AMED_7435 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7435 PF14759 Reductase C-terminal AMED_7436 PF13370 4Fe-4S single cluster domain AMED_7437 PF00440 Bacterial regulatory proteins, tetR family AMED_7438 PF00067 Cytochrome P450 AMED_7439 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_7440 PF00440 Bacterial regulatory proteins, tetR family AMED_7441 PF00248 Aldo/keto reductase family AMED_7442 PF00296 Luciferase-like monooxygenase AMED_7443 PF13463 Winged helix DNA-binding domain AMED_7444 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_7445 PF00041 Fibronectin type III domain AMED_7445 PF03662 Glycosyl hydrolase family 79, N-terminal domain AMED_7446 PF02811 PHP domain AMED_7446 PF07733 Bacterial DNA polymerase III alpha subunit AMED_7446 PF14579 Helix-hairpin-helix motif AMED_7447 PF04542 Sigma-70 region 2 AMED_7447 PF08281 Sigma-70, region 4 AMED_7448 PF03795 YCII-related domain AMED_7449 PF01872 RibD C-terminal domain AMED_7450 PF01276 Orn/Lys/Arg decarboxylase, major domain AMED_7450 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AMED_7450 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AMED_7453 PF04072 Leucine carboxyl methyltransferase AMED_7454 PF00561 alpha/beta hydrolase fold AMED_7454 PF08386 TAP-like protein AMED_7455 PF00392 Bacterial regulatory proteins, gntR family AMED_7456 PF00005 ABC transporter AMED_7458 PF03403 Platelet-activating factor acetylhydrolase, isoform II AMED_7459 PF03403 Platelet-activating factor acetylhydrolase, isoform II AMED_7460 PF10503 Esterase PHB depolymerase AMED_7461 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_7462 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7463 PF00210 Ferritin-like domain AMED_7464 PF03061 Thioesterase superfamily AMED_7465 PF03707 AMED_7465 AMED_7466 PF03029 Conserved hypothetical ATP binding protein AMED_7467 PF05331 AMED_7467 AMED_7468 PF03259 Roadblock/LC7 domain AMED_7469 PF00672 HAMP domain AMED_7469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7470 PF01022 Bacterial regulatory protein, arsR family AMED_7472 PF01370 NAD dependent epimerase/dehydratase family AMED_7473 PF02566 OsmC-like protein AMED_7475 PF00561 alpha/beta hydrolase fold AMED_7476 PF00196 Bacterial regulatory proteins, luxR family AMED_7476 PF13191 AAA ATPase domain AMED_7477 PF07519 Tannase and feruloyl esterase AMED_7478 PF00248 Aldo/keto reductase family AMED_7479 PF01979 Amidohydrolase family AMED_7480 PF03861 ANTAR domain AMED_7480 PF13185 GAF domain AMED_7481 PF11338 AMED_7481 AMED_7482 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_7482 PF14587 O-Glycosyl hydrolase family 30 AMED_7483 PF01301 Glycosyl hydrolases family 35 AMED_7484 PF06964 Alpha-L-arabinofuranosidase C-terminus AMED_7485 PF01547 Bacterial extracellular solute-binding protein AMED_7486 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7487 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7488 PF00356 Bacterial regulatory proteins, lacI family AMED_7488 PF13377 Periplasmic binding protein-like domain AMED_7490 PF01323 DSBA-like thioredoxin domain AMED_7492 PF01738 Dienelactone hydrolase family AMED_7493 PF13602 Zinc-binding dehydrogenase AMED_7494 PF00440 Bacterial regulatory proteins, tetR family AMED_7494 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_7495 PF00296 Luciferase-like monooxygenase AMED_7496 PF02469 Fasciclin domain AMED_7497 PF00174 Oxidoreductase molybdopterin binding domain AMED_7498 PF10099 AMED_7498 AMED_7498 PF13490 Putative zinc-finger AMED_7499 PF04542 Sigma-70 region 2 AMED_7499 PF08281 Sigma-70, region 4 AMED_7500 PF04686 Streptomyces sporulation and cell division protein, SsgA AMED_7501 PF00501 AMP-binding enzyme AMED_7501 PF13193 AMP-binding enzyme C-terminal domain AMED_7502 PF00920 Dehydratase family AMED_7503 PF01113 Dihydrodipicolinate reductase, N-terminus AMED_7504 PF02627 Carboxymuconolactone decarboxylase family AMED_7505 PF05199 GMC oxidoreductase AMED_7506 PF01479 S4 domain AMED_7508 PF04542 Sigma-70 region 2 AMED_7508 PF08281 Sigma-70, region 4 AMED_7509 PF07883 Cupin domain AMED_7510 PF04542 Sigma-70 region 2 AMED_7510 PF04545 Sigma-70, region 4 AMED_7513 PF01979 Amidohydrolase family AMED_7514 PF00563 EAL domain AMED_7514 PF00990 GGDEF domain AMED_7515 PF04199 Putative cyclase AMED_7519 PF00704 Glycosyl hydrolases family 18 AMED_7521 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMED_7522 PF13302 Acetyltransferase (GNAT) domain AMED_7523 PF04075 Domain of unknown function (DUF385) AMED_7524 PF13649 Methyltransferase domain AMED_7525 PF02426 Muconolactone delta-isomerase AMED_7525 PF13556 PucR C-terminal helix-turn-helix domain AMED_7526 PF11188 AMED_7526 AMED_7527 PF13443 Cro/C1-type HTH DNA-binding domain AMED_7529 PF11271 AMED_7529 AMED_7530 PF08241 Methyltransferase domain AMED_7531 PF00534 Glycosyl transferases group 1 AMED_7531 PF13439 Glycosyltransferase Family 4 AMED_7536 PF00754 F5/8 type C domain AMED_7536 PF11847 AMED_7536 AMED_7537 PF13578 Methyltransferase domain AMED_7539 PF00092 von Willebrand factor type A domain AMED_7539 PF13531 Bacterial extracellular solute-binding protein AMED_7541 PF00155 Aminotransferase class I and II AMED_7541 PF00392 Bacterial regulatory proteins, gntR family AMED_7542 PF02627 Carboxymuconolactone decarboxylase family AMED_7543 PF07690 Major Facilitator Superfamily AMED_7544 PF07690 Major Facilitator Superfamily AMED_7545 PF01047 MarR family AMED_7546 PF01609 Transposase DDE domain AMED_7546 PF13006 AMED_7546 AMED_7547 PF13180 PDZ domain AMED_7547 PF13365 Trypsin-like peptidase domain AMED_7548 PF01266 FAD dependent oxidoreductase AMED_7548 PF01571 Aminomethyltransferase folate-binding domain AMED_7548 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMED_7548 PF16350 AMED_7548 AMED_7549 PF00551 Formyl transferase AMED_7550 PF04268 Sarcosine oxidase, gamma subunit family AMED_7551 PF01571 Aminomethyltransferase folate-binding domain AMED_7551 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMED_7551 PF13510 2Fe-2S iron-sulfur cluster binding domain AMED_7552 PF04267 Sarcosine oxidase, delta subunit family AMED_7553 PF01266 FAD dependent oxidoreductase AMED_7554 PF00464 Serine hydroxymethyltransferase AMED_7555 PF00392 Bacterial regulatory proteins, gntR family AMED_7555 PF07729 FCD domain AMED_7556 PF00355 Rieske [2Fe-2S] domain AMED_7556 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMED_7557 PF00440 Bacterial regulatory proteins, tetR family AMED_7558 PF00171 Aldehyde dehydrogenase family AMED_7559 PF13520 Amino acid permease AMED_7560 PF00732 GMC oxidoreductase AMED_7560 PF05199 GMC oxidoreductase AMED_7561 PF01609 Transposase DDE domain AMED_7561 PF13006 AMED_7561 AMED_7562 PF00355 Rieske [2Fe-2S] domain AMED_7563 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_7563 PF14759 Reductase C-terminal AMED_7565 PF00561 alpha/beta hydrolase fold AMED_7566 PF00440 Bacterial regulatory proteins, tetR family AMED_7569 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMED_7569 PF00364 Biotin-requiring enzyme AMED_7569 PF02817 e3 binding domain AMED_7570 PF02779 Transketolase, pyrimidine binding domain AMED_7570 PF02780 Transketolase, C-terminal domain AMED_7571 PF00676 Dehydrogenase E1 component AMED_7572 PF01037 AsnC family AMED_7572 PF13412 Winged helix-turn-helix DNA-binding AMED_7573 PF00583 Acetyltransferase (GNAT) family AMED_7574 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_7574 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_7577 PF00072 Response regulator receiver domain AMED_7577 PF00486 Transcriptional regulatory protein, C terminal AMED_7578 PF00512 His Kinase A (phospho-acceptor) domain AMED_7578 PF00672 HAMP domain AMED_7578 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7579 PF01494 FAD binding domain AMED_7580 PF01614 Bacterial transcriptional regulator AMED_7580 PF09339 IclR helix-turn-helix domain AMED_7581 PF00704 Glycosyl hydrolases family 18 AMED_7581 PF02018 Carbohydrate binding domain AMED_7583 PF00069 Protein kinase domain AMED_7587 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AMED_7587 PF12840 Helix-turn-helix domain AMED_7588 PF09375 Imelysin AMED_7589 PF04261 Dyp-type peroxidase family AMED_7590 PF04185 Phosphoesterase family AMED_7591 PF13581 Histidine kinase-like ATPase domain AMED_7592 PF13466 STAS domain AMED_7593 PF00072 Response regulator receiver domain AMED_7594 PF00512 His Kinase A (phospho-acceptor) domain AMED_7594 PF00672 HAMP domain AMED_7594 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7594 PF05227 CHASE3 domain AMED_7595 PF00072 Response regulator receiver domain AMED_7595 PF07228 Stage II sporulation protein E (SpoIIE) AMED_7596 PF10009 AMED_7596 AMED_7600 PF03583 Secretory lipase AMED_7602 PF13556 PucR C-terminal helix-turn-helix domain AMED_7603 PF13556 PucR C-terminal helix-turn-helix domain AMED_7604 PF00561 alpha/beta hydrolase fold AMED_7605 PF13556 PucR C-terminal helix-turn-helix domain AMED_7606 PF13556 PucR C-terminal helix-turn-helix domain AMED_7607 PF08659 KR domain AMED_7611 PF02470 AMED_7611 AMED_7612 PF02470 AMED_7612 AMED_7613 PF02470 AMED_7613 AMED_7613 PF11887 AMED_7613 AMED_7614 PF02470 AMED_7614 AMED_7615 PF02470 AMED_7615 AMED_7616 PF02470 AMED_7616 AMED_7616 PF11887 AMED_7616 AMED_7617 PF02405 AMED_7617 AMED_7618 PF02405 AMED_7618 AMED_7621 PF00005 ABC transporter AMED_7622 PF01061 AMED_7622 AMED_7625 PF12770 AMED_7625 AMED_7625 PF13424 Tetratricopeptide repeat AMED_7627 PF00144 Beta-lactamase AMED_7631 PF00293 NUDIX domain AMED_7632 PF12697 Alpha/beta hydrolase family AMED_7633 PF00440 Bacterial regulatory proteins, tetR family AMED_7633 PF13977 Bacterial transcriptional repressor AMED_7634 PF01872 RibD C-terminal domain AMED_7639 PF01636 Phosphotransferase enzyme family AMED_7640 PF00440 Bacterial regulatory proteins, tetR family AMED_7641 PF00296 Luciferase-like monooxygenase AMED_7642 PF01814 Hemerythrin HHE cation binding domain AMED_7642 PF04075 Domain of unknown function (DUF385) AMED_7644 PF00501 AMP-binding enzyme AMED_7644 PF13193 AMP-binding enzyme C-terminal domain AMED_7645 PF00384 Molybdopterin oxidoreductase AMED_7645 PF01568 Molydopterin dinucleotide binding domain AMED_7645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMED_7646 PF00296 Luciferase-like monooxygenase AMED_7647 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_7648 PF01638 HxlR-like helix-turn-helix AMED_7649 PF07883 Cupin domain AMED_7650 PF01965 DJ-1/PfpI family AMED_7650 PF12833 Helix-turn-helix domain AMED_7651 PF00440 Bacterial regulatory proteins, tetR family AMED_7651 PF13977 Bacterial transcriptional repressor AMED_7652 PF00583 Acetyltransferase (GNAT) family AMED_7655 PF07690 Major Facilitator Superfamily AMED_7656 PF00561 alpha/beta hydrolase fold AMED_7658 PF03050 AMED_7658 AMED_7658 PF13005 AMED_7658 AMED_7660 PF01844 HNH endonuclease AMED_7660 PF02720 AMED_7660 AMED_7661 PF00583 Acetyltransferase (GNAT) family AMED_7663 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7664 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_7664 PF03466 LysR substrate binding domain AMED_7665 PF13406 Transglycosylase SLT domain AMED_7667 PF00440 Bacterial regulatory proteins, tetR family AMED_7667 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_7668 PF09350 AMED_7668 AMED_7669 PF02096 60Kd inner membrane protein AMED_7671 PF00149 Calcineurin-like phosphoesterase AMED_7672 PF12697 Alpha/beta hydrolase family AMED_7673 PF01661 Macro domain AMED_7674 PF13419 Haloacid dehalogenase-like hydrolase AMED_7675 PF00293 NUDIX domain AMED_7676 PF07681 AMED_7676 AMED_7677 PF03029 Conserved hypothetical ATP binding protein AMED_7678 PF05331 AMED_7678 AMED_7679 PF03259 Roadblock/LC7 domain AMED_7680 PF00672 HAMP domain AMED_7680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7680 PF08376 Nitrate and nitrite sensing AMED_7682 PF00501 AMP-binding enzyme AMED_7683 PF00106 short chain dehydrogenase AMED_7684 PF05977 Transmembrane secretion effector AMED_7685 PF00990 GGDEF domain AMED_7687 PF09056 Prokaryotic phospholipase A2 AMED_7688 PF03816 Cell envelope-related transcriptional attenuator domain AMED_7688 PF13399 LytR cell envelope-related transcriptional attenuator AMED_7689 PF13560 Helix-turn-helix domain AMED_7690 PF00743 Flavin-binding monooxygenase-like AMED_7691 PF00440 Bacterial regulatory proteins, tetR family AMED_7693 PF12277 AMED_7693 AMED_7694 PF03435 Saccharopine dehydrogenase AMED_7695 PF01965 DJ-1/PfpI family AMED_7695 PF12833 Helix-turn-helix domain AMED_7696 PF00248 Aldo/keto reductase family AMED_7697 PF06719 AMED_7697 AMED_7697 PF12833 Helix-turn-helix domain AMED_7701 PF00578 AhpC/TSA family AMED_7702 PF05729 NACHT domain AMED_7703 PF01725 Ham1 family AMED_7704 PF01138 3' exoribonuclease family, domain 1 AMED_7704 PF03725 3' exoribonuclease family, domain 2 AMED_7705 PF12706 Beta-lactamase superfamily domain AMED_7706 PF01177 Asp/Glu/Hydantoin racemase AMED_7707 PF01694 Rhomboid family AMED_7708 PF00797 N-acetyltransferase AMED_7709 PF01177 Asp/Glu/Hydantoin racemase AMED_7710 PF00753 Metallo-beta-lactamase superfamily AMED_7711 PF00291 Pyridoxal-phosphate dependent enzyme AMED_7712 PF02597 ThiS family AMED_7713 PF14464 Prokaryotic homologs of the JAB domain AMED_7715 PF03576 Peptidase family S58 AMED_7716 PF09438 AMED_7716 AMED_7717 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMED_7718 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMED_7719 PF00857 Isochorismatase family AMED_7720 PF01081 KDPG and KHG aldolase AMED_7722 PF02632 BioY family AMED_7723 PF00270 DEAD/DEAH box helicase AMED_7723 PF13307 Helicase C-terminal domain AMED_7726 PF02566 OsmC-like protein AMED_7727 PF01981 Peptidyl-tRNA hydrolase PTH2 AMED_7728 PF12710 haloacid dehalogenase-like hydrolase AMED_7728 PF13740 ACT domain AMED_7729 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMED_7730 PF01636 Phosphotransferase enzyme family AMED_7731 PF12697 Alpha/beta hydrolase family AMED_7732 PF13302 Acetyltransferase (GNAT) domain AMED_7734 PF01527 Transposase AMED_7735 PF00665 Integrase core domain AMED_7735 PF13276 AMED_7735 AMED_7736 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AMED_7737 PF09723 AMED_7737 AMED_7738 PF01053 Cys/Met metabolism PLP-dependent enzyme AMED_7739 PF01037 AsnC family AMED_7739 PF13412 Winged helix-turn-helix DNA-binding AMED_7740 PF13238 AAA domain AMED_7741 PF01037 AsnC family AMED_7741 PF13404 AsnC-type helix-turn-helix domain AMED_7742 PF00296 Luciferase-like monooxygenase AMED_7743 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMED_7744 PF01980 Uncharacterised protein family UPF0066 AMED_7745 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_7745 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_7746 PF00381 PTS HPr component phosphorylation site AMED_7746 PF03610 PTS system fructose IIA component AMED_7747 PF02734 DAK2 domain AMED_7748 PF02733 Dak1 domain AMED_7751 PF00474 Sodium:solute symporter family AMED_7753 PF07866 Protein of unknown function (DUF1653) AMED_7754 PF01939 Protein of unknown function DUF91 AMED_7755 PF00293 NUDIX domain AMED_7756 PF11066 AMED_7756 AMED_7757 PF00440 Bacterial regulatory proteins, tetR family AMED_7758 PF00378 Enoyl-CoA hydratase/isomerase family AMED_7759 PF01965 DJ-1/PfpI family AMED_7759 PF12833 Helix-turn-helix domain AMED_7760 PF00857 Isochorismatase family AMED_7761 PF01642 Methylmalonyl-CoA mutase AMED_7761 PF02310 B12 binding domain AMED_7764 PF01810 AMED_7764 AMED_7765 PF01810 AMED_7765 AMED_7766 PF12697 Alpha/beta hydrolase family AMED_7767 PF13460 NADH(P)-binding AMED_7768 PF12680 SnoaL-like domain AMED_7769 PF00440 Bacterial regulatory proteins, tetR family AMED_7769 PF16859 AMED_7769 AMED_7770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMED_7771 PF01923 Cobalamin adenosyltransferase AMED_7772 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMED_7773 PF10739 AMED_7773 AMED_7774 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMED_7775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMED_7775 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMED_7776 PF00231 ATP synthase AMED_7777 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMED_7777 PF00306 ATP synthase alpha/beta chain, C terminal domain AMED_7777 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMED_7778 PF00213 ATP synthase delta (OSCP) subunit AMED_7779 PF00430 ATP synthase B/B' CF(0) AMED_7780 PF00137 ATP synthase subunit C AMED_7781 PF00119 ATP synthase A chain AMED_7783 PF00953 Glycosyl transferase family 4 AMED_7784 PF01300 Telomere recombination AMED_7786 PF05175 Methyltransferase small domain AMED_7787 PF00535 Glycosyl transferase family 2 AMED_7788 PF04138 AMED_7788 AMED_7789 PF04188 AMED_7789 AMED_7790 PF00472 RF-1 domain AMED_7790 PF03462 PCRF domain AMED_7791 PF01197 Ribosomal protein L31 AMED_7792 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMED_7792 PF07497 Rho termination factor, RNA-binding domain AMED_7792 PF07498 Rho termination factor, N-terminal domain AMED_7793 PF00288 GHMP kinases N terminal domain AMED_7793 PF08544 GHMP kinases C terminal AMED_7794 PF00291 Pyridoxal-phosphate dependent enzyme AMED_7795 PF00742 Homoserine dehydrogenase AMED_7795 PF01842 ACT domain AMED_7795 PF03447 Homoserine dehydrogenase, NAD binding domain AMED_7796 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_7796 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_7797 PF00750 tRNA synthetases class I (R) AMED_7797 PF03485 Arginyl tRNA synthetase N terminal domain AMED_7797 PF05746 DALR anticodon binding domain AMED_7798 PF11303 AMED_7798 AMED_7799 PF03713 Domain of unknown function (DUF305) AMED_7800 PF12721 AMED_7800 AMED_7801 PF01545 Cation efflux family AMED_7802 PF12802 MarR family AMED_7803 PF00106 short chain dehydrogenase AMED_7804 PF06441 Epoxide hydrolase N terminus AMED_7805 PF00589 Phage integrase family AMED_7806 PF08240 Alcohol dehydrogenase GroES-like domain AMED_7806 PF13602 Zinc-binding dehydrogenase AMED_7807 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_7808 PF12833 Helix-turn-helix domain AMED_7809 PF13474 SnoaL-like domain AMED_7810 PF01527 Transposase AMED_7811 PF00665 Integrase core domain AMED_7811 PF13276 AMED_7811 AMED_7813 PF05787 Bacterial protein of unknown function (DUF839) AMED_7815 PF00294 pfkB family carbohydrate kinase AMED_7816 PF01975 Survival protein SurE AMED_7818 PF00486 Transcriptional regulatory protein, C terminal AMED_7818 PF00931 NB-ARC domain AMED_7818 PF03704 Bacterial transcriptional activator domain AMED_7818 PF13424 Tetratricopeptide repeat AMED_7819 PF00067 Cytochrome P450 AMED_7821 PF00295 Glycosyl hydrolases family 28 AMED_7821 PF12708 Pectate lyase superfamily protein AMED_7822 PF00652 Ricin-type beta-trefoil lectin domain AMED_7822 PF07995 Glucose / Sorbosone dehydrogenase AMED_7823 PF00652 Ricin-type beta-trefoil lectin domain AMED_7823 PF16499 AMED_7823 AMED_7824 PF00652 Ricin-type beta-trefoil lectin domain AMED_7824 PF03664 Glycosyl hydrolase family 62 AMED_7825 PF00041 Fibronectin type III domain AMED_7825 PF00553 Cellulose binding domain AMED_7825 PF12891 Glycoside hydrolase family 44 AMED_7826 PF00480 ROK family AMED_7826 PF13412 Winged helix-turn-helix DNA-binding AMED_7827 PF00703 Glycosyl hydrolases family 2 AMED_7827 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMED_7827 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMED_7827 PF16355 AMED_7827 AMED_7828 PF00652 Ricin-type beta-trefoil lectin domain AMED_7829 PF00652 Ricin-type beta-trefoil lectin domain AMED_7830 PF02018 Carbohydrate binding domain AMED_7830 PF13229 Right handed beta helix region AMED_7833 PF00553 Cellulose binding domain AMED_7833 PF12891 Glycoside hydrolase family 44 AMED_7834 PF13411 MerR HTH family regulatory protein AMED_7836 PF13581 Histidine kinase-like ATPase domain AMED_7838 PF02325 AMED_7838 AMED_7839 PF00440 Bacterial regulatory proteins, tetR family AMED_7839 PF13977 Bacterial transcriptional repressor AMED_7840 PF01494 FAD binding domain AMED_7841 PF02470 AMED_7841 AMED_7842 PF01609 Transposase DDE domain AMED_7842 PF13808 AMED_7842 AMED_7843 PF08241 Methyltransferase domain AMED_7844 PF09754 PAC2 family AMED_7845 PF03703 AMED_7845 AMED_7846 PF03703 AMED_7846 AMED_7847 PF06439 Domain of Unknown Function (DUF1080) AMED_7848 PF01614 Bacterial transcriptional regulator AMED_7848 PF09339 IclR helix-turn-helix domain AMED_7849 PF00583 Acetyltransferase (GNAT) family AMED_7852 PF00202 Aminotransferase class-III AMED_7853 PF02515 CoA-transferase family III AMED_7854 PF12840 Helix-turn-helix domain AMED_7856 PF00392 Bacterial regulatory proteins, gntR family AMED_7856 PF07729 FCD domain AMED_7857 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_7858 PF02538 AMED_7858 AMED_7859 PF01968 Hydantoinase/oxoprolinase AMED_7859 PF05378 AMED_7859 AMED_7860 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_7860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_7860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_7861 PF01266 FAD dependent oxidoreductase AMED_7862 PF03007 AMED_7862 AMED_7862 PF06974 AMED_7862 AMED_7864 PF03070 TENA/THI-4/PQQC family AMED_7865 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMED_7866 PF04055 Radical SAM superfamily AMED_7866 PF13186 Iron-sulfur cluster-binding domain AMED_7867 PF12706 Beta-lactamase superfamily domain AMED_7868 PF07690 Major Facilitator Superfamily AMED_7870 PF01425 Amidase AMED_7871 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_7873 PF01177 Asp/Glu/Hydantoin racemase AMED_7874 PF00392 Bacterial regulatory proteins, gntR family AMED_7874 PF07729 FCD domain AMED_7875 PF14081 AMED_7875 AMED_7876 PF00180 Isocitrate/isopropylmalate dehydrogenase AMED_7877 PF00171 Aldehyde dehydrogenase family AMED_7878 PF00202 Aminotransferase class-III AMED_7879 PF12903 Protein of unknown function (DUF3830) AMED_7880 PF00248 Aldo/keto reductase family AMED_7882 PF03259 Roadblock/LC7 domain AMED_7883 PF01565 FAD binding domain AMED_7883 PF02913 FAD linked oxidases, C-terminal domain AMED_7884 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_7884 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_7885 PF04672 S-adenosyl methyltransferase AMED_7886 PF04672 S-adenosyl methyltransferase AMED_7887 PF07690 Major Facilitator Superfamily AMED_7888 PF12587 AMED_7888 AMED_7889 PF07730 Histidine kinase AMED_7890 PF00072 Response regulator receiver domain AMED_7890 PF00196 Bacterial regulatory proteins, luxR family AMED_7891 PF03176 MMPL family AMED_7892 PF07971 Glycosyl hydrolase family 92 AMED_7893 PF00378 Enoyl-CoA hydratase/isomerase family AMED_7893 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_7893 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_7894 PF00108 Thiolase, N-terminal domain AMED_7894 PF02803 Thiolase, C-terminal domain AMED_7895 PF00440 Bacterial regulatory proteins, tetR family AMED_7898 PF00931 NB-ARC domain AMED_7898 PF13374 Tetratricopeptide repeat AMED_7898 PF13424 Tetratricopeptide repeat AMED_7899 PF07728 AAA domain (dynein-related subfamily) AMED_7902 PF06772 AMED_7902 AMED_7903 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7903 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7903 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7904 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7904 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7909 PF00665 Integrase core domain AMED_7909 PF13276 AMED_7909 AMED_7910 PF01527 Transposase AMED_7912 PF00293 NUDIX domain AMED_7913 PF06850 AMED_7913 AMED_7914 PF00106 short chain dehydrogenase AMED_7915 PF00583 Acetyltransferase (GNAT) family AMED_7916 PF00557 Metallopeptidase family M24 AMED_7917 PF02575 YbaB/EbfC DNA-binding family AMED_7920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_7920 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_7920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_7921 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AMED_7921 PF00364 Biotin-requiring enzyme AMED_7921 PF02785 Biotin carboxylase C-terminal domain AMED_7921 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMED_7922 PF01039 Carboxyl transferase domain AMED_7923 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_7925 PF00440 Bacterial regulatory proteins, tetR family AMED_7927 PF10067 AMED_7927 AMED_7928 PF00561 alpha/beta hydrolase fold AMED_7929 PF01053 Cys/Met metabolism PLP-dependent enzyme AMED_7930 PF01494 FAD binding domain AMED_7931 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_7932 PF03551 Transcriptional regulator PadR-like family AMED_7933 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_7935 PF13649 Methyltransferase domain AMED_7936 PF13556 PucR C-terminal helix-turn-helix domain AMED_7937 PF05572 Pregnancy-associated plasma protein-A AMED_7938 PF13602 Zinc-binding dehydrogenase AMED_7939 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMED_7939 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMED_7941 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7942 PF00672 HAMP domain AMED_7943 PF00072 Response regulator receiver domain AMED_7943 PF00486 Transcriptional regulatory protein, C terminal AMED_7944 PF00005 ABC transporter AMED_7945 PF12679 AMED_7945 AMED_7946 PF00005 ABC transporter AMED_7946 PF00664 ABC transporter transmembrane region AMED_7947 PF14124 AMED_7947 AMED_7949 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMED_7949 PF00676 Dehydrogenase E1 component AMED_7949 PF02779 Transketolase, pyrimidine binding domain AMED_7949 PF16078 AMED_7949 AMED_7949 PF16870 AMED_7949 AMED_7950 PF00534 Glycosyl transferases group 1 AMED_7950 PF00561 alpha/beta hydrolase fold AMED_7951 PF02709 N-terminal domain of galactosyltransferase AMED_7953 PF13527 Acetyltransferase (GNAT) domain AMED_7954 PF00296 Luciferase-like monooxygenase AMED_7955 PF01810 AMED_7955 AMED_7956 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AMED_7957 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7958 PF00528 Binding-protein-dependent transport system inner membrane component AMED_7959 PF00005 ABC transporter AMED_7960 PF01861 Protein of unknown function DUF43 AMED_7961 PF00390 Malic enzyme, N-terminal domain AMED_7961 PF03949 Malic enzyme, NAD binding domain AMED_7962 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMED_7963 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_7964 PF01047 MarR family AMED_7966 PF14539 Domain of unknown function (DUF4442) AMED_7967 PF00300 Histidine phosphatase superfamily (branch 1) AMED_7968 PF00583 Acetyltransferase (GNAT) family AMED_7970 PF00781 Diacylglycerol kinase catalytic domain AMED_7971 PF02467 AMED_7971 AMED_7972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7972 PF07568 AMED_7972 AMED_7972 PF08448 PAS fold AMED_7972 PF12282 Signal transduction histidine kinase AMED_7974 PF13490 Putative zinc-finger AMED_7975 PF04542 Sigma-70 region 2 AMED_7975 PF08281 Sigma-70, region 4 AMED_7976 PF04073 Aminoacyl-tRNA editing domain AMED_7978 PF02586 Uncharacterised ACR, COG2135 AMED_7979 PF03193 Protein of unknown function, DUF258 AMED_7983 PF03007 AMED_7983 AMED_7983 PF06974 AMED_7983 AMED_7984 PF00588 SpoU rRNA Methylase family AMED_7984 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMED_7985 PF13419 Haloacid dehalogenase-like hydrolase AMED_7987 PF00067 Cytochrome P450 AMED_7988 PF01043 SecA preprotein cross-linking domain AMED_7988 PF07516 SecA Wing and Scaffold domain AMED_7988 PF07517 SecA DEAD-like domain AMED_7989 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMED_7989 PF16321 AMED_7989 AMED_7991 PF10647 AMED_7991 AMED_7992 PF00512 His Kinase A (phospho-acceptor) domain AMED_7992 PF00672 HAMP domain AMED_7992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_7993 PF00072 Response regulator receiver domain AMED_7993 PF00486 Transcriptional regulatory protein, C terminal AMED_7994 PF00355 Rieske [2Fe-2S] domain AMED_7995 PF01614 Bacterial transcriptional regulator AMED_7995 PF09339 IclR helix-turn-helix domain AMED_7996 PF08279 HTH domain AMED_7996 PF13280 AMED_7996 AMED_7998 PF01266 FAD dependent oxidoreductase AMED_7998 PF01571 Aminomethyltransferase folate-binding domain AMED_7998 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMED_7999 PF02223 Thymidylate kinase AMED_8001 PF12385 AMED_8001 AMED_8003 PF11208 AMED_8003 AMED_8004 PF01850 PIN domain AMED_8005 PF05534 AMED_8005 AMED_8006 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMED_8006 PF05221 S-adenosyl-L-homocysteine hydrolase AMED_8009 PF13520 Amino acid permease AMED_8010 PF01545 Cation efflux family AMED_8011 PF00486 Transcriptional regulatory protein, C terminal AMED_8011 PF00931 NB-ARC domain AMED_8011 PF03704 Bacterial transcriptional activator domain AMED_8012 PF01238 Phosphomannose isomerase type I AMED_8014 PF03966 Trm112p-like protein AMED_8015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMED_8015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMED_8015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMED_8015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMED_8016 PF12005 AMED_8016 AMED_8017 PF06262 Possibl zinc metallo-peptidase AMED_8018 PF00535 Glycosyl transferase family 2 AMED_8019 PF02467 AMED_8019 AMED_8023 PF02585 GlcNAc-PI de-N-acetylase AMED_8024 PF00005 ABC transporter AMED_8024 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8025 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8026 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8026 PF12911 AMED_8026 AMED_8027 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8028 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_8029 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_8030 PF00009 Elongation factor Tu GTP binding domain AMED_8030 PF00679 Elongation factor G C-terminus AMED_8030 PF03144 Elongation factor Tu domain 2 AMED_8032 PF03795 YCII-related domain AMED_8033 PF00579 tRNA synthetases class I (W and Y) AMED_8034 PF00293 NUDIX domain AMED_8035 PF00512 His Kinase A (phospho-acceptor) domain AMED_8035 PF00672 HAMP domain AMED_8035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8036 PF00072 Response regulator receiver domain AMED_8036 PF00486 Transcriptional regulatory protein, C terminal AMED_8037 PF03888 MucB/RseB family AMED_8038 PF00005 ABC transporter AMED_8039 PF12679 AMED_8039 AMED_8040 PF00005 ABC transporter AMED_8040 PF08402 TOBE domain AMED_8041 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8042 PF13343 Bacterial extracellular solute-binding protein AMED_8043 PF01329 Pterin 4 alpha carbinolamine dehydratase AMED_8047 PF01926 50S ribosome-binding GTPase AMED_8047 PF06071 Protein of unknown function (DUF933) AMED_8048 PF02805 Metal binding domain of Ada AMED_8048 PF06029 AlkA N-terminal domain AMED_8048 PF12833 Helix-turn-helix domain AMED_8049 PF08410 AMED_8049 AMED_8050 PF13476 AAA domain AMED_8050 PF13558 Putative exonuclease SbcCD, C subunit AMED_8051 PF00149 Calcineurin-like phosphoesterase AMED_8052 PF02646 AMED_8052 AMED_8054 PF02401 LytB protein AMED_8056 PF02601 AMED_8056 AMED_8056 PF13742 AMED_8056 AMED_8058 PF02609 Exonuclease VII small subunit AMED_8059 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AMED_8060 PF00089 Trypsin AMED_8061 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_8062 PF00206 Lyase AMED_8062 PF10415 Fumarase C C-terminus AMED_8063 PF13560 Helix-turn-helix domain AMED_8064 PF01068 ATP dependent DNA ligase domain AMED_8064 PF04675 DNA ligase N terminus AMED_8064 PF04679 ATP dependent DNA ligase C terminal region AMED_8067 PF00753 Metallo-beta-lactamase superfamily AMED_8070 PF03745 Domain of unknown function (DUF309) AMED_8071 PF00478 IMP dehydrogenase / GMP reductase domain AMED_8071 PF00571 CBS domain AMED_8073 PF01979 Amidohydrolase family AMED_8073 PF07676 WD40-like Beta Propeller Repeat AMED_8074 PF02562 PhoH-like protein AMED_8074 PF13638 PIN domain AMED_8075 PF01255 Putative undecaprenyl diphosphate synthase AMED_8076 PF03006 AMED_8076 AMED_8078 PF02627 Carboxymuconolactone decarboxylase family AMED_8079 PF05239 PRC-barrel domain AMED_8079 PF09557 AMED_8079 AMED_8080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_8080 PF01756 Acyl-CoA oxidase AMED_8080 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_8080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_8081 PF00295 Glycosyl hydrolases family 28 AMED_8081 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMED_8081 PF12708 Pectate lyase superfamily protein AMED_8085 PF03190 Protein of unknown function, DUF255 AMED_8087 PF12623 RNA repair, ligase-Pnkp-associating, region of Hen1 AMED_8087 PF13489 Methyltransferase domain AMED_8088 PF00149 Calcineurin-like phosphoesterase AMED_8088 PF13671 AAA domain AMED_8088 PF16536 AMED_8088 AMED_8088 PF16542 AMED_8088 AMED_8090 PF02585 GlcNAc-PI de-N-acetylase AMED_8091 PF14155 AMED_8091 AMED_8092 PF01272 Transcription elongation factor, GreA/GreB, C-term AMED_8092 PF03449 Transcription elongation factor, N-terminal AMED_8094 PF01037 AsnC family AMED_8094 PF13404 AsnC-type helix-turn-helix domain AMED_8095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_8096 PF02575 YbaB/EbfC DNA-binding family AMED_8097 PF10824 Protein of unknown function (DUF2580) AMED_8101 PF00291 Pyridoxal-phosphate dependent enzyme AMED_8103 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8104 PF01053 Cys/Met metabolism PLP-dependent enzyme AMED_8107 PF00291 Pyridoxal-phosphate dependent enzyme AMED_8107 PF00571 CBS domain AMED_8108 PF00108 Thiolase, N-terminal domain AMED_8108 PF02803 Thiolase, C-terminal domain AMED_8110 PF12811 AMED_8110 AMED_8112 PF04203 Sortase family AMED_8113 PF00106 short chain dehydrogenase AMED_8113 PF07993 Male sterility protein AMED_8115 PF00196 Bacterial regulatory proteins, luxR family AMED_8117 PF06013 Proteins of 100 residues with WXG AMED_8118 PF00486 Transcriptional regulatory protein, C terminal AMED_8118 PF03704 Bacterial transcriptional activator domain AMED_8118 PF13191 AAA ATPase domain AMED_8119 PF00196 Bacterial regulatory proteins, luxR family AMED_8119 PF00486 Transcriptional regulatory protein, C terminal AMED_8119 PF03704 Bacterial transcriptional activator domain AMED_8119 PF13191 AAA ATPase domain AMED_8120 PF00232 Glycosyl hydrolase family 1 AMED_8121 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8122 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8123 PF13416 Bacterial extracellular solute-binding protein AMED_8124 PF00196 Bacterial regulatory proteins, luxR family AMED_8125 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_8126 PF00248 Aldo/keto reductase family AMED_8128 PF07690 Major Facilitator Superfamily AMED_8129 PF01037 AsnC family AMED_8129 PF13404 AsnC-type helix-turn-helix domain AMED_8133 PF00182 Chitinase class I AMED_8134 PF00975 Thioesterase domain AMED_8135 PF00775 Dioxygenase AMED_8135 PF02839 Carbohydrate binding domain AMED_8136 PF02311 AraC-like ligand binding domain AMED_8136 PF12833 Helix-turn-helix domain AMED_8138 PF13354 Beta-lactamase enzyme family AMED_8139 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_8139 PF00553 Cellulose binding domain AMED_8140 PF00009 Elongation factor Tu GTP binding domain AMED_8140 PF00679 Elongation factor G C-terminus AMED_8140 PF03764 Elongation factor G, domain IV AMED_8140 PF14492 Elongation Factor G, domain II AMED_8141 PF01636 Phosphotransferase enzyme family AMED_8142 PF00512 His Kinase A (phospho-acceptor) domain AMED_8142 PF00672 HAMP domain AMED_8142 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8143 PF00113 Enolase, C-terminal TIM barrel domain AMED_8143 PF03952 Enolase, N-terminal domain AMED_8144 PF00717 Peptidase S24-like AMED_8144 PF10502 Signal peptidase, peptidase S26 AMED_8145 PF00005 ABC transporter AMED_8145 PF00664 ABC transporter transmembrane region AMED_8147 PF07291 AMED_8147 AMED_8149 PF00931 NB-ARC domain AMED_8149 PF13424 Tetratricopeptide repeat AMED_8150 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_8151 PF00486 Transcriptional regulatory protein, C terminal AMED_8151 PF03704 Bacterial transcriptional activator domain AMED_8152 PF01494 FAD binding domain AMED_8154 PF00196 Bacterial regulatory proteins, luxR family AMED_8154 PF13191 AAA ATPase domain AMED_8154 PF13432 Tetratricopeptide repeat AMED_8156 PF00588 SpoU rRNA Methylase family AMED_8160 PF00999 Sodium/hydrogen exchanger family AMED_8162 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMED_8163 PF04055 Radical SAM superfamily AMED_8163 PF13353 4Fe-4S single cluster domain AMED_8165 PF08281 Sigma-70, region 4 AMED_8166 PF00069 Protein kinase domain AMED_8169 PF02452 PemK-like protein AMED_8171 PF00561 alpha/beta hydrolase fold AMED_8171 PF06779 AMED_8171 AMED_8172 PF00440 Bacterial regulatory proteins, tetR family AMED_8173 PF04542 Sigma-70 region 2 AMED_8173 PF08281 Sigma-70, region 4 AMED_8175 PF05572 Pregnancy-associated plasma protein-A AMED_8177 PF12697 Alpha/beta hydrolase family AMED_8178 PF03995 Peptidase inhibitor family I36 AMED_8180 PF07883 Cupin domain AMED_8183 PF01048 Phosphorylase superfamily AMED_8184 PF00293 NUDIX domain AMED_8186 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_8187 PF03167 Uracil DNA glycosylase superfamily AMED_8189 PF00450 Serine carboxypeptidase AMED_8190 PF00082 Subtilase family AMED_8191 PF00005 ABC transporter AMED_8191 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8192 PF00005 ABC transporter AMED_8192 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8193 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8193 PF12911 AMED_8193 AMED_8194 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_8196 PF02541 Ppx/GppA phosphatase family AMED_8197 PF13406 Transglycosylase SLT domain AMED_8198 PF04417 AMED_8198 AMED_8199 PF04977 Septum formation initiator AMED_8200 PF00113 Enolase, C-terminal TIM barrel domain AMED_8200 PF03952 Enolase, N-terminal domain AMED_8202 PF13432 Tetratricopeptide repeat AMED_8204 PF03239 AMED_8204 AMED_8205 PF09375 Imelysin AMED_8205 PF13473 Cupredoxin-like domain AMED_8206 PF04261 Dyp-type peroxidase family AMED_8207 PF00440 Bacterial regulatory proteins, tetR family AMED_8208 PF14606 GDSL-like Lipase/Acylhydrolase family AMED_8209 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8212 PF00005 ABC transporter AMED_8213 PF13490 Putative zinc-finger AMED_8214 PF04542 Sigma-70 region 2 AMED_8214 PF08281 Sigma-70, region 4 AMED_8215 PF03819 MazG nucleotide pyrophosphohydrolase domain AMED_8219 PF00270 DEAD/DEAH box helicase AMED_8219 PF00271 Helicase conserved C-terminal domain AMED_8219 PF02559 CarD-like/TRCF domain AMED_8219 PF03461 TRCF domain AMED_8220 PF00296 Luciferase-like monooxygenase AMED_8221 PF13560 Helix-turn-helix domain AMED_8222 PF09335 AMED_8222 AMED_8223 PF13649 Methyltransferase domain AMED_8224 PF07730 Histidine kinase AMED_8225 PF00072 Response regulator receiver domain AMED_8225 PF00196 Bacterial regulatory proteins, luxR family AMED_8226 PF07995 Glucose / Sorbosone dehydrogenase AMED_8227 PF13354 Beta-lactamase enzyme family AMED_8228 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_8229 PF00857 Isochorismatase family AMED_8230 PF00293 NUDIX domain AMED_8231 PF00440 Bacterial regulatory proteins, tetR family AMED_8232 PF00487 AMED_8232 AMED_8233 PF00990 GGDEF domain AMED_8234 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_8234 PF00483 Nucleotidyl transferase AMED_8235 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMED_8235 PF14572 Phosphoribosyl synthetase-associated domain AMED_8236 PF00296 Luciferase-like monooxygenase AMED_8237 PF13460 NADH(P)-binding AMED_8239 PF01386 Ribosomal L25p family AMED_8239 PF14693 Ribosomal protein TL5, C-terminal domain AMED_8240 PF01195 Peptidyl-tRNA hydrolase AMED_8243 PF00501 AMP-binding enzyme AMED_8244 PF00005 ABC transporter AMED_8244 PF12848 ABC transporter AMED_8244 PF16326 AMED_8244 AMED_8245 PF04266 ASCH domain AMED_8246 PF00288 GHMP kinases N terminal domain AMED_8246 PF08544 GHMP kinases C terminal AMED_8247 PF00005 ABC transporter AMED_8247 PF09383 NIL domain AMED_8248 PF00398 Ribosomal RNA adenine dimethylase AMED_8249 PF03990 AMED_8249 AMED_8249 PF06737 Transglycosylase-like domain AMED_8249 PF07501 G5 domain AMED_8250 PF01026 TatD related DNase AMED_8251 PF09334 tRNA synthetases class I (M) AMED_8252 PF03551 Transcriptional regulator PadR-like family AMED_8253 PF00005 ABC transporter AMED_8253 PF13732 AMED_8253 AMED_8254 PF01061 AMED_8254 AMED_8255 PF01183 Glycosyl hydrolases family 25 AMED_8256 PF00425 chorismate binding enzyme AMED_8257 PF00107 Zinc-binding dehydrogenase AMED_8257 PF08240 Alcohol dehydrogenase GroES-like domain AMED_8259 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMED_8260 PF02366 AMED_8260 AMED_8260 PF16192 AMED_8260 AMED_8261 PF02311 AraC-like ligand binding domain AMED_8261 PF12833 Helix-turn-helix domain AMED_8262 PF08241 Methyltransferase domain AMED_8263 PF00069 Protein kinase domain AMED_8264 PF00501 AMP-binding enzyme AMED_8264 PF13193 AMP-binding enzyme C-terminal domain AMED_8264 PF16177 AMED_8264 AMED_8265 PF00728 Glycosyl hydrolase family 20, catalytic domain AMED_8265 PF02838 Glycosyl hydrolase family 20, domain 2 AMED_8266 PF00440 Bacterial regulatory proteins, tetR family AMED_8267 PF03473 MOSC domain AMED_8268 PF01546 Peptidase family M20/M25/M40 AMED_8268 PF07687 Peptidase dimerisation domain AMED_8269 PF03358 NADPH-dependent FMN reductase AMED_8269 PF13474 SnoaL-like domain AMED_8270 PF04542 Sigma-70 region 2 AMED_8270 PF08281 Sigma-70, region 4 AMED_8271 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_8272 PF00440 Bacterial regulatory proteins, tetR family AMED_8272 PF13305 WHG domain AMED_8273 PF10979 AMED_8273 AMED_8275 PF12840 Helix-turn-helix domain AMED_8277 PF03176 MMPL family AMED_8278 PF00563 EAL domain AMED_8278 PF00989 PAS fold AMED_8278 PF00990 GGDEF domain AMED_8280 PF00067 Cytochrome P450 AMED_8281 PF13614 AAA domain AMED_8284 PF13460 NADH(P)-binding AMED_8285 PF02557 D-alanyl-D-alanine carboxypeptidase AMED_8286 PF00072 Response regulator receiver domain AMED_8286 PF00486 Transcriptional regulatory protein, C terminal AMED_8287 PF00512 His Kinase A (phospho-acceptor) domain AMED_8287 PF00672 HAMP domain AMED_8287 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8288 PF01427 D-ala-D-ala dipeptidase AMED_8289 PF01820 D-ala D-ala ligase N-terminus AMED_8289 PF07478 D-ala D-ala ligase C-terminus AMED_8290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMED_8290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMED_8291 PF00291 Pyridoxal-phosphate dependent enzyme AMED_8292 PF01638 HxlR-like helix-turn-helix AMED_8293 PF00155 Aminotransferase class I and II AMED_8294 PF00501 AMP-binding enzyme AMED_8294 PF00550 Phosphopantetheine attachment site AMED_8294 PF00668 Condensation domain AMED_8294 PF08242 Methyltransferase domain AMED_8294 PF08415 AMED_8294 AMED_8295 PF00550 Phosphopantetheine attachment site AMED_8296 PF00975 Thioesterase domain AMED_8297 PF01810 AMED_8297 AMED_8299 PF00069 Protein kinase domain AMED_8302 PF10592 AMED_8302 AMED_8303 PF01935 Domain of unknown function DUF87 AMED_8307 PF00270 DEAD/DEAH box helicase AMED_8307 PF00271 Helicase conserved C-terminal domain AMED_8307 PF09369 AMED_8307 AMED_8309 PF13302 Acetyltransferase (GNAT) domain AMED_8310 PF00994 Probable molybdopterin binding domain AMED_8310 PF03453 MoeA N-terminal region (domain I and II) AMED_8310 PF03454 MoeA C-terminal region (domain IV) AMED_8311 PF00483 Nucleotidyl transferase AMED_8312 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMED_8313 PF09723 AMED_8313 AMED_8314 PF08666 SAF domain AMED_8315 PF01741 Large-conductance mechanosensitive channel, MscL AMED_8317 PF00994 Probable molybdopterin binding domain AMED_8318 PF01370 NAD dependent epimerase/dehydratase family AMED_8319 PF01609 Transposase DDE domain AMED_8321 PF00512 His Kinase A (phospho-acceptor) domain AMED_8321 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8322 PF00072 Response regulator receiver domain AMED_8322 PF00486 Transcriptional regulatory protein, C terminal AMED_8324 PF00535 Glycosyl transferase family 2 AMED_8325 PF09837 Uncharacterized protein conserved in bacteria (DUF2064) AMED_8327 PF00174 Oxidoreductase molybdopterin binding domain AMED_8329 PF13180 PDZ domain AMED_8329 PF13365 Trypsin-like peptidase domain AMED_8330 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AMED_8330 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AMED_8331 PF00455 AMED_8331 AMED_8331 PF08220 DeoR-like helix-turn-helix domain AMED_8332 PF00512 His Kinase A (phospho-acceptor) domain AMED_8332 PF00672 HAMP domain AMED_8332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8333 PF00072 Response regulator receiver domain AMED_8333 PF00486 Transcriptional regulatory protein, C terminal AMED_8334 PF03458 AMED_8334 AMED_8335 PF00072 Response regulator receiver domain AMED_8335 PF00196 Bacterial regulatory proteins, luxR family AMED_8336 PF05175 Methyltransferase small domain AMED_8338 PF07690 Major Facilitator Superfamily AMED_8339 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_8339 PF03466 LysR substrate binding domain AMED_8340 PF00248 Aldo/keto reductase family AMED_8341 PF00155 Aminotransferase class I and II AMED_8341 PF00392 Bacterial regulatory proteins, gntR family AMED_8342 PF07971 Glycosyl hydrolase family 92 AMED_8343 PF00534 Glycosyl transferases group 1 AMED_8344 PF00069 Protein kinase domain AMED_8345 PF00459 Inositol monophosphatase family AMED_8346 PF02633 Creatinine amidohydrolase AMED_8347 PF00925 GTP cyclohydrolase II AMED_8348 PF03706 AMED_8348 AMED_8350 PF00534 Glycosyl transferases group 1 AMED_8351 PF01242 6-pyruvoyl tetrahydropterin synthase AMED_8353 PF01066 CDP-alcohol phosphatidyltransferase AMED_8355 PF09995 AMED_8355 AMED_8356 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_8356 PF03466 LysR substrate binding domain AMED_8357 PF01565 FAD binding domain AMED_8358 PF01757 AMED_8358 AMED_8359 PF04075 Domain of unknown function (DUF385) AMED_8360 PF12802 MarR family AMED_8361 PF13396 AMED_8361 AMED_8363 PF13302 Acetyltransferase (GNAT) domain AMED_8364 PF07848 PaaX-like protein AMED_8364 PF08223 PaaX-like protein C-terminal domain AMED_8365 PF01042 Endoribonuclease L-PSP AMED_8366 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMED_8366 PF01494 FAD binding domain AMED_8367 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_8367 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_8367 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_8368 PF10067 AMED_8368 AMED_8369 PF00232 Glycosyl hydrolase family 1 AMED_8370 PF00005 ABC transporter AMED_8370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8371 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8371 PF12911 AMED_8371 AMED_8372 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8373 PF00005 ABC transporter AMED_8373 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8374 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_8375 PF00480 ROK family AMED_8376 PF00480 ROK family AMED_8377 PF00652 Ricin-type beta-trefoil lectin domain AMED_8377 PF00722 Glycosyl hydrolases family 16 AMED_8378 PF00652 Ricin-type beta-trefoil lectin domain AMED_8378 PF07335 AMED_8378 AMED_8379 PF00652 Ricin-type beta-trefoil lectin domain AMED_8379 PF02055 O-Glycosyl hydrolase family 30 AMED_8379 PF17189 AMED_8379 AMED_8380 PF00652 Ricin-type beta-trefoil lectin domain AMED_8381 PF00392 Bacterial regulatory proteins, gntR family AMED_8381 PF07729 FCD domain AMED_8382 PF07690 Major Facilitator Superfamily AMED_8383 PF07286 Protein of unknown function (DUF1445) AMED_8384 PF03746 LamB/YcsF family AMED_8385 PF02682 Allophanate hydrolase subunit 1 AMED_8386 PF02626 Allophanate hydrolase subunit 2 AMED_8389 PF12840 Helix-turn-helix domain AMED_8390 PF13532 2OG-Fe(II) oxygenase superfamily AMED_8391 PF00107 Zinc-binding dehydrogenase AMED_8391 PF08240 Alcohol dehydrogenase GroES-like domain AMED_8393 PF00296 Luciferase-like monooxygenase AMED_8394 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMED_8394 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMED_8394 PF04023 FeoA domain AMED_8395 PF00583 Acetyltransferase (GNAT) family AMED_8397 PF07969 Amidohydrolase family AMED_8398 PF00378 Enoyl-CoA hydratase/isomerase family AMED_8399 PF00501 AMP-binding enzyme AMED_8399 PF13193 AMP-binding enzyme C-terminal domain AMED_8400 PF00440 Bacterial regulatory proteins, tetR family AMED_8402 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_8402 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_8402 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_8403 PF01648 4'-phosphopantetheinyl transferase superfamily AMED_8404 PF00425 chorismate binding enzyme AMED_8406 PF00501 AMP-binding enzyme AMED_8406 PF13193 AMP-binding enzyme C-terminal domain AMED_8407 PF01547 Bacterial extracellular solute-binding protein AMED_8408 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8409 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8411 PF03061 Thioesterase superfamily AMED_8412 PF13529 Peptidase_C39 like family AMED_8413 PF02627 Carboxymuconolactone decarboxylase family AMED_8414 PF04542 Sigma-70 region 2 AMED_8414 PF08281 Sigma-70, region 4 AMED_8415 PF00107 Zinc-binding dehydrogenase AMED_8415 PF08240 Alcohol dehydrogenase GroES-like domain AMED_8417 PF01565 FAD binding domain AMED_8417 PF02913 FAD linked oxidases, C-terminal domain AMED_8418 PF00440 Bacterial regulatory proteins, tetR family AMED_8419 PF01266 FAD dependent oxidoreductase AMED_8419 PF16901 AMED_8419 AMED_8420 PF01381 Helix-turn-helix AMED_8422 PF00005 ABC transporter AMED_8422 PF13732 AMED_8422 AMED_8423 PF12698 ABC-2 family transporter protein AMED_8424 PF13673 Acetyltransferase (GNAT) domain AMED_8425 PF00875 DNA photolyase AMED_8425 PF03441 FAD binding domain of DNA photolyase AMED_8426 PF00285 Citrate synthase AMED_8427 PF00294 pfkB family carbohydrate kinase AMED_8428 PF00440 Bacterial regulatory proteins, tetR family AMED_8429 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_8429 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_8429 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMED_8430 PF05685 Putative restriction endonuclease AMED_8431 PF05685 Putative restriction endonuclease AMED_8432 PF01979 Amidohydrolase family AMED_8433 PF00583 Acetyltransferase (GNAT) family AMED_8434 PF01263 Aldose 1-epimerase AMED_8435 PF09286 Pro-kumamolisin, activation domain AMED_8436 PF00440 Bacterial regulatory proteins, tetR family AMED_8437 PF00753 Metallo-beta-lactamase superfamily AMED_8438 PF00753 Metallo-beta-lactamase superfamily AMED_8439 PF12079 AMED_8439 AMED_8440 PF05977 Transmembrane secretion effector AMED_8441 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8441 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMED_8443 PF00440 Bacterial regulatory proteins, tetR family AMED_8444 PF03583 Secretory lipase AMED_8445 PF01774 UreD urease accessory protein AMED_8446 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMED_8447 PF01730 UreF AMED_8448 PF00449 Urease alpha-subunit, N-terminal domain AMED_8448 PF01979 Amidohydrolase family AMED_8449 PF00699 Urease beta subunit AMED_8450 PF00547 Urease, gamma subunit AMED_8451 PF00285 Citrate synthase AMED_8452 PF00440 Bacterial regulatory proteins, tetR family AMED_8453 PF00106 short chain dehydrogenase AMED_8453 PF00561 alpha/beta hydrolase fold AMED_8454 PF00005 ABC transporter AMED_8455 PF01061 AMED_8455 AMED_8456 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8456 PF07730 Histidine kinase AMED_8457 PF00072 Response regulator receiver domain AMED_8457 PF00196 Bacterial regulatory proteins, luxR family AMED_8458 PF00144 Beta-lactamase AMED_8460 PF00266 Aminotransferase class-V AMED_8461 PF09594 AMED_8461 AMED_8462 PF01979 Amidohydrolase family AMED_8463 PF02687 AMED_8463 AMED_8463 PF12704 MacB-like periplasmic core domain AMED_8464 PF00005 ABC transporter AMED_8465 PF01471 Putative peptidoglycan binding domain AMED_8467 PF00072 Response regulator receiver domain AMED_8467 PF00486 Transcriptional regulatory protein, C terminal AMED_8468 PF00512 His Kinase A (phospho-acceptor) domain AMED_8468 PF00672 HAMP domain AMED_8468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8469 PF11268 AMED_8469 AMED_8470 PF04237 YjbR AMED_8472 PF10801 AMED_8472 AMED_8473 PF00588 SpoU rRNA Methylase family AMED_8474 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMED_8475 PF00440 Bacterial regulatory proteins, tetR family AMED_8476 PF01126 Heme oxygenase AMED_8477 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMED_8477 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMED_8478 PF00797 N-acetyltransferase AMED_8479 PF05977 Transmembrane secretion effector AMED_8480 PF01047 MarR family AMED_8482 PF00860 Permease family AMED_8483 PF10745 AMED_8483 AMED_8485 PF11228 AMED_8485 AMED_8486 PF05096 Glutamine cyclotransferase AMED_8487 PF07690 Major Facilitator Superfamily AMED_8488 PF10969 AMED_8488 AMED_8489 PF00313 'Cold-shock' DNA-binding domain AMED_8491 PF12710 haloacid dehalogenase-like hydrolase AMED_8492 PF00440 Bacterial regulatory proteins, tetR family AMED_8493 PF00268 Ribonucleotide reductase, small chain AMED_8494 PF00501 AMP-binding enzyme AMED_8494 PF13193 AMP-binding enzyme C-terminal domain AMED_8496 PF04542 Sigma-70 region 2 AMED_8496 PF08281 Sigma-70, region 4 AMED_8497 PF14200 Ricin-type beta-trefoil lectin domain-like AMED_8497 PF15899 AMED_8497 AMED_8498 PF00004 ATPase family associated with various cellular activities (AAA) AMED_8499 PF11211 AMED_8499 AMED_8500 PF04055 Radical SAM superfamily AMED_8500 PF13353 4Fe-4S single cluster domain AMED_8503 PF14011 EspG family AMED_8506 PF02567 Phenazine biosynthesis-like protein AMED_8507 PF03733 AMED_8507 AMED_8508 PF00149 Calcineurin-like phosphoesterase AMED_8509 PF13242 HAD-hyrolase-like AMED_8509 PF13344 Haloacid dehalogenase-like hydrolase AMED_8510 PF07732 Multicopper oxidase AMED_8511 PF00005 ABC transporter AMED_8511 PF03459 TOBE domain AMED_8512 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8513 PF13531 Bacterial extracellular solute-binding protein AMED_8514 PF03459 TOBE domain AMED_8514 PF12728 Helix-turn-helix domain AMED_8515 PF01047 MarR family AMED_8516 PF04055 Radical SAM superfamily AMED_8516 PF06463 Molybdenum Cofactor Synthesis C AMED_8516 PF13353 4Fe-4S single cluster domain AMED_8517 PF02597 ThiS family AMED_8518 PF01476 LysM domain AMED_8518 PF06737 Transglycosylase-like domain AMED_8521 PF00994 Probable molybdopterin binding domain AMED_8521 PF02391 MoaE protein AMED_8522 PF01967 MoaC family AMED_8523 PF00390 Malic enzyme, N-terminal domain AMED_8523 PF03949 Malic enzyme, NAD binding domain AMED_8525 PF13625 AMED_8525 AMED_8527 PF05331 AMED_8527 AMED_8528 PF03259 Roadblock/LC7 domain AMED_8529 PF03029 Conserved hypothetical ATP binding protein AMED_8530 PF05331 AMED_8530 AMED_8531 PF03259 Roadblock/LC7 domain AMED_8532 PF00672 HAMP domain AMED_8532 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8532 PF08376 Nitrate and nitrite sensing AMED_8533 PF09084 NMT1/THI5 like AMED_8534 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8535 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8536 PF00005 ABC transporter AMED_8537 PF00205 Thiamine pyrophosphate enzyme, central domain AMED_8537 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMED_8537 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMED_8539 PF09286 Pro-kumamolisin, activation domain AMED_8543 PF03932 CutC family AMED_8544 PF00672 HAMP domain AMED_8544 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8544 PF08376 Nitrate and nitrite sensing AMED_8545 PF13379 NMT1-like family AMED_8547 PF04851 Type III restriction enzyme, res subunit AMED_8547 PF13625 AMED_8547 AMED_8547 PF16203 AMED_8547 AMED_8549 PF14062 AMED_8549 AMED_8550 PF01904 Protein of unknown function DUF72 AMED_8551 PF13378 Enolase C-terminal domain-like AMED_8552 PF04024 AMED_8552 AMED_8554 PF00118 TCP-1/cpn60 chaperonin family AMED_8555 PF00069 Protein kinase domain AMED_8556 PF00313 'Cold-shock' DNA-binding domain AMED_8557 PF01987 Mitochondrial biogenesis AIM24 AMED_8558 PF01987 Mitochondrial biogenesis AIM24 AMED_8559 PF00994 Probable molybdopterin binding domain AMED_8559 PF03453 MoeA N-terminal region (domain I and II) AMED_8559 PF03454 MoeA C-terminal region (domain IV) AMED_8560 PF05977 Transmembrane secretion effector AMED_8561 PF12840 Helix-turn-helix domain AMED_8562 PF04226 AMED_8562 AMED_8563 PF02666 AMED_8563 AMED_8564 PF01066 CDP-alcohol phosphatidyltransferase AMED_8565 PF00004 ATPase family associated with various cellular activities (AAA) AMED_8565 PF02359 Cell division protein 48 (CDC48), N-terminal domain AMED_8566 PF13399 LytR cell envelope-related transcriptional attenuator AMED_8567 PF11662 AMED_8567 AMED_8568 PF01327 Polypeptide deformylase AMED_8569 PF00723 Glycosyl hydrolases family 15 AMED_8569 PF09137 Glucodextranase, domain N AMED_8570 PF13180 PDZ domain AMED_8570 PF13365 Trypsin-like peptidase domain AMED_8571 PF01964 ThiC family AMED_8571 PF13667 ThiC-associated domain AMED_8572 PF08543 Phosphomethylpyrimidine kinase AMED_8573 PF16670 AMED_8573 AMED_8574 PF08543 Phosphomethylpyrimidine kinase AMED_8575 PF01047 MarR family AMED_8576 PF05690 Thiazole biosynthesis protein ThiG AMED_8577 PF02597 ThiS family AMED_8578 PF01266 FAD dependent oxidoreductase AMED_8579 PF02581 Thiamine monophosphate synthase/TENI AMED_8581 PF00291 Pyridoxal-phosphate dependent enzyme AMED_8582 PF07690 Major Facilitator Superfamily AMED_8583 PF00392 Bacterial regulatory proteins, gntR family AMED_8583 PF07702 UTRA domain AMED_8584 PF01380 SIS domain AMED_8585 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMED_8586 PF11361 AMED_8586 AMED_8587 PF13472 GDSL-like Lipase/Acylhydrolase family AMED_8588 PF00691 OmpA family AMED_8593 PF00486 Transcriptional regulatory protein, C terminal AMED_8593 PF00931 NB-ARC domain AMED_8593 PF03704 Bacterial transcriptional activator domain AMED_8594 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AMED_8595 PF06339 AMED_8595 AMED_8596 PF00202 Aminotransferase class-III AMED_8597 PF00583 Acetyltransferase (GNAT) family AMED_8598 PF01734 Patatin-like phospholipase AMED_8598 PF11856 AMED_8598 AMED_8599 PF08240 Alcohol dehydrogenase GroES-like domain AMED_8599 PF13602 Zinc-binding dehydrogenase AMED_8600 PF01638 HxlR-like helix-turn-helix AMED_8602 PF14337 AMED_8602 AMED_8603 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_8604 PF06305 AMED_8604 AMED_8605 PF01244 Membrane dipeptidase (Peptidase family M19) AMED_8606 PF12802 MarR family AMED_8608 PF04909 Amidohydrolase AMED_8609 PF00501 AMP-binding enzyme AMED_8609 PF13193 AMP-binding enzyme C-terminal domain AMED_8611 PF00378 Enoyl-CoA hydratase/isomerase family AMED_8613 PF00583 Acetyltransferase (GNAT) family AMED_8614 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_8614 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_8614 PF07691 PA14 domain AMED_8614 PF14310 Fibronectin type III-like domain AMED_8615 PF00440 Bacterial regulatory proteins, tetR family AMED_8615 PF13977 Bacterial transcriptional repressor AMED_8616 PF01638 HxlR-like helix-turn-helix AMED_8617 PF01872 RibD C-terminal domain AMED_8618 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8619 PF12802 MarR family AMED_8620 PF07617 AMED_8620 AMED_8621 PF00005 ABC transporter AMED_8622 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_8623 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMED_8624 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_8626 PF13380 CoA binding domain AMED_8627 PF01436 NHL repeat AMED_8628 PF06386 AMED_8628 AMED_8629 PF00741 AMED_8629 AMED_8630 PF05121 AMED_8630 AMED_8631 PF00741 AMED_8631 AMED_8632 PF06386 AMED_8632 AMED_8633 PF00741 AMED_8633 AMED_8634 PF05800 AMED_8634 AMED_8635 PF00072 Response regulator receiver domain AMED_8635 PF00486 Transcriptional regulatory protein, C terminal AMED_8636 PF00512 His Kinase A (phospho-acceptor) domain AMED_8636 PF00672 HAMP domain AMED_8636 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8637 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMED_8638 PF08245 Mur ligase middle domain AMED_8638 PF08353 AMED_8638 AMED_8639 PF00107 Zinc-binding dehydrogenase AMED_8639 PF08240 Alcohol dehydrogenase GroES-like domain AMED_8640 PF00440 Bacterial regulatory proteins, tetR family AMED_8641 PF01614 Bacterial transcriptional regulator AMED_8641 PF09339 IclR helix-turn-helix domain AMED_8642 PF02652 AMED_8642 AMED_8643 PF13023 HD domain AMED_8644 PF04542 Sigma-70 region 2 AMED_8644 PF08281 Sigma-70, region 4 AMED_8645 PF03795 YCII-related domain AMED_8646 PF03795 YCII-related domain AMED_8647 PF09243 AMED_8647 AMED_8648 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_8649 PF00512 His Kinase A (phospho-acceptor) domain AMED_8649 PF00672 HAMP domain AMED_8649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8650 PF09852 AMED_8650 AMED_8651 PF14016 AMED_8651 AMED_8652 PF12770 AMED_8652 AMED_8654 PF04542 Sigma-70 region 2 AMED_8655 PF00082 Subtilase family AMED_8656 PF03534 Salmonella virulence plasmid 65kDa B protein AMED_8657 PF04542 Sigma-70 region 2 AMED_8657 PF08281 Sigma-70, region 4 AMED_8658 PF02627 Carboxymuconolactone decarboxylase family AMED_8659 PF00754 F5/8 type C domain AMED_8659 PF01120 Alpha-L-fucosidase AMED_8659 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AMED_8659 PF16990 AMED_8659 AMED_8661 PF10898 AMED_8661 AMED_8663 PF13290 AMED_8663 AMED_8664 PF05139 Erythromycin esterase AMED_8665 PF00376 MerR family regulatory protein AMED_8665 PF13411 MerR HTH family regulatory protein AMED_8667 PF12697 Alpha/beta hydrolase family AMED_8668 PF06738 AMED_8668 AMED_8668 PF12821 AMED_8668 AMED_8669 PF00982 Glycosyltransferase family 20 AMED_8670 PF00723 Glycosyl hydrolases family 15 AMED_8670 PF02358 Trehalose-phosphatase AMED_8672 PF12840 Helix-turn-helix domain AMED_8673 PF12146 Putative lysophospholipase AMED_8674 PF04542 Sigma-70 region 2 AMED_8674 PF08281 Sigma-70, region 4 AMED_8676 PF13481 AAA domain AMED_8678 PF02559 CarD-like/TRCF domain AMED_8679 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMED_8680 PF02542 YgbB family AMED_8681 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8682 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8683 PF13419 Haloacid dehalogenase-like hydrolase AMED_8684 PF01406 tRNA synthetases class I (C) catalytic domain AMED_8684 PF09190 DALR domain AMED_8685 PF00588 SpoU rRNA Methylase family AMED_8685 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMED_8686 PF03062 AMED_8686 AMED_8687 PF00300 Histidine phosphatase superfamily (branch 1) AMED_8688 PF01841 Transglutaminase-like superfamily AMED_8692 PF00596 Class II Aldolase and Adducin N-terminal domain AMED_8694 PF04286 AMED_8694 AMED_8696 PF00950 AMED_8696 AMED_8697 PF00005 ABC transporter AMED_8698 PF01297 Periplasmic solute binding protein family AMED_8699 PF00356 Bacterial regulatory proteins, lacI family AMED_8699 PF13377 Periplasmic binding protein-like domain AMED_8700 PF00484 Carbonic anhydrase AMED_8701 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMED_8702 PF00633 Helix-hairpin-helix motif AMED_8702 PF00730 HhH-GPD superfamily base excision DNA repair protein AMED_8702 PF10576 Iron-sulfur binding domain of endonuclease III AMED_8703 PF01471 Putative peptidoglycan binding domain AMED_8703 PF01510 N-acetylmuramoyl-L-alanine amidase AMED_8704 PF12697 Alpha/beta hydrolase family AMED_8705 PF01433 Peptidase family M1 AMED_8706 PF00004 ATPase family associated with various cellular activities (AAA) AMED_8707 PF03992 Antibiotic biosynthesis monooxygenase AMED_8708 PF02146 Sir2 family AMED_8709 PF01435 Peptidase family M48 AMED_8710 PF02534 Type IV secretory system Conjugative DNA transfer AMED_8718 PF03372 Endonuclease/Exonuclease/phosphatase family AMED_8719 PF00005 ABC transporter AMED_8719 PF13732 AMED_8719 AMED_8720 PF01061 AMED_8720 AMED_8721 PF00486 Transcriptional regulatory protein, C terminal AMED_8721 PF03704 Bacterial transcriptional activator domain AMED_8721 PF13191 AAA ATPase domain AMED_8722 PF01433 Peptidase family M1 AMED_8723 PF01470 Pyroglutamyl peptidase AMED_8725 PF00012 Hsp70 protein AMED_8726 PF13744 Helix-turn-helix domain AMED_8729 PF00004 ATPase family associated with various cellular activities (AAA) AMED_8729 PF02151 UvrB/uvrC motif AMED_8729 PF02861 Clp amino terminal domain AMED_8729 PF07724 AAA domain (Cdc48 subfamily) AMED_8729 PF10431 C-terminal, D2-small domain, of ClpB protein AMED_8730 PF11575 AMED_8730 AMED_8731 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_8732 PF12833 Helix-turn-helix domain AMED_8733 PF11774 Lsr2 AMED_8734 PF00152 tRNA synthetases class II (D, K and N) AMED_8734 PF01336 OB-fold nucleic acid binding domain AMED_8735 PF08241 Methyltransferase domain AMED_8736 PF03309 Type III pantothenate kinase AMED_8737 PF02261 Aspartate decarboxylase AMED_8738 PF02569 Pantoate-beta-alanine ligase AMED_8739 PF10727 Rossmann-like domain AMED_8739 PF10728 Domain of unknown function (DUF2520) AMED_8740 PF13367 AMED_8740 AMED_8742 PF11377 AMED_8742 AMED_8743 PF13411 MerR HTH family regulatory protein AMED_8744 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMED_8745 PF02152 Dihydroneopterin aldolase AMED_8746 PF00809 Pterin binding enzyme AMED_8747 PF01227 GTP cyclohydrolase I AMED_8748 PF00004 ATPase family associated with various cellular activities (AAA) AMED_8748 PF01434 Peptidase family M41 AMED_8749 PF14011 EspG family AMED_8750 PF14011 EspG family AMED_8753 PF00156 Phosphoribosyl transferase domain AMED_8754 PF01171 PP-loop family AMED_8754 PF09179 TilS substrate binding domain AMED_8755 PF10103 Uncharacterised conserved protein (DUF2342) AMED_8756 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AMED_8757 PF00719 Inorganic pyrophosphatase AMED_8758 PF07690 Major Facilitator Superfamily AMED_8759 PF00464 Serine hydroxymethyltransferase AMED_8760 PF00298 Ribosomal protein L11, RNA binding domain AMED_8760 PF03946 Ribosomal protein L11, N-terminal domain AMED_8761 PF00132 Bacterial transferase hexapeptide (six repeats) AMED_8762 PF00246 Zinc carboxypeptidase AMED_8763 PF00440 Bacterial regulatory proteins, tetR family AMED_8764 PF01272 Transcription elongation factor, GreA/GreB, C-term AMED_8765 PF07110 EthD domain AMED_8768 PF13560 Helix-turn-helix domain AMED_8769 PF00293 NUDIX domain AMED_8774 PF01636 Phosphotransferase enzyme family AMED_8777 PF00392 Bacterial regulatory proteins, gntR family AMED_8780 PF01580 FtsK/SpoIIIE family AMED_8783 PF12307 AMED_8783 AMED_8784 PF12728 Helix-turn-helix domain AMED_8785 PF00589 Phage integrase family AMED_8785 PF14659 Phage integrase, N-terminal SAM-like domain AMED_8787 PF13177 DNA polymerase III, delta subunit AMED_8788 PF02223 Thymidylate kinase AMED_8788 PF05977 Transmembrane secretion effector AMED_8792 PF14011 EspG family AMED_8794 PF01131 DNA topoisomerase AMED_8794 PF01751 Toprim domain AMED_8794 PF13368 AMED_8794 AMED_8795 PF13365 Trypsin-like peptidase domain AMED_8798 PF03030 Inorganic H+ pyrophosphatase AMED_8799 PF00270 DEAD/DEAH box helicase AMED_8799 PF00271 Helicase conserved C-terminal domain AMED_8799 PF09369 AMED_8799 AMED_8800 PF09250 Bifunctional DNA primase/polymerase, N-terminal AMED_8802 PF14029 AMED_8802 AMED_8803 PF00482 Type II secretion system (T2SS), protein F AMED_8805 PF00437 Type II/IV secretion system protein AMED_8807 PF12710 haloacid dehalogenase-like hydrolase AMED_8808 PF00933 Glycosyl hydrolase family 3 N terminal domain AMED_8808 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMED_8809 PF07075 Protein of unknown function (DUF1343) AMED_8810 PF00144 Beta-lactamase AMED_8810 PF05547 AMED_8810 AMED_8811 PF01380 SIS domain AMED_8811 PF01418 Helix-turn-helix domain, rpiR family AMED_8812 PF13580 SIS domain AMED_8813 PF03824 AMED_8813 AMED_8815 PF00156 Phosphoribosyl transferase domain AMED_8816 PF13302 Acetyltransferase (GNAT) domain AMED_8817 PF00501 AMP-binding enzyme AMED_8817 PF13193 AMP-binding enzyme C-terminal domain AMED_8817 PF16177 AMED_8817 AMED_8819 PF07883 Cupin domain AMED_8820 PF01988 AMED_8820 AMED_8821 PF00854 POT family AMED_8822 PF06965 Na+/H+ antiporter 1 AMED_8823 PF07332 AMED_8823 AMED_8824 PF00561 alpha/beta hydrolase fold AMED_8825 PF01494 FAD binding domain AMED_8826 PF00392 Bacterial regulatory proteins, gntR family AMED_8826 PF00440 Bacterial regulatory proteins, tetR family AMED_8826 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AMED_8827 PF02674 AMED_8827 AMED_8827 PF13365 Trypsin-like peptidase domain AMED_8828 PF00293 NUDIX domain AMED_8829 PF08534 Redoxin AMED_8830 PF00633 Helix-hairpin-helix motif AMED_8830 PF00730 HhH-GPD superfamily base excision DNA repair protein AMED_8830 PF10576 Iron-sulfur binding domain of endonuclease III AMED_8832 PF00027 Cyclic nucleotide-binding domain AMED_8832 PF13545 Crp-like helix-turn-helix domain AMED_8833 PF01609 Transposase DDE domain AMED_8833 PF13006 AMED_8833 AMED_8834 PF07690 Major Facilitator Superfamily AMED_8835 PF00712 DNA polymerase III beta subunit, N-terminal domain AMED_8835 PF02767 DNA polymerase III beta subunit, central domain AMED_8835 PF02768 DNA polymerase III beta subunit, C-terminal domain AMED_8837 PF01037 AsnC family AMED_8838 PF13404 AsnC-type helix-turn-helix domain AMED_8839 PF13468 Glyoxalase-like domain AMED_8841 PF00135 Carboxylesterase family AMED_8842 PF00462 Glutaredoxin AMED_8843 PF00753 Metallo-beta-lactamase superfamily AMED_8847 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AMED_8848 PF13783 AMED_8848 AMED_8850 PF02374 Anion-transporting ATPase AMED_8851 PF02374 Anion-transporting ATPase AMED_8852 PF02467 AMED_8852 AMED_8853 PF00905 Penicillin binding protein transpeptidase domain AMED_8853 PF00912 Transglycosylase AMED_8854 PF00069 Protein kinase domain AMED_8855 PF00149 Calcineurin-like phosphoesterase AMED_8856 PF08241 Methyltransferase domain AMED_8857 PF00326 Prolyl oligopeptidase family AMED_8858 PF01361 Tautomerase enzyme AMED_8859 PF13480 Acetyltransferase (GNAT) domain AMED_8861 PF13480 Acetyltransferase (GNAT) domain AMED_8863 PF00535 Glycosyl transferase family 2 AMED_8864 PF13535 ATP-grasp domain AMED_8866 PF02543 Carbamoyltransferase AMED_8866 PF16861 AMED_8866 AMED_8868 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AMED_8869 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMED_8870 PF00210 Ferritin-like domain AMED_8871 PF02566 OsmC-like protein AMED_8872 PF03358 NADPH-dependent FMN reductase AMED_8873 PF07859 alpha/beta hydrolase fold AMED_8875 PF00440 Bacterial regulatory proteins, tetR family AMED_8876 PF07690 Major Facilitator Superfamily AMED_8877 PF07690 Major Facilitator Superfamily AMED_8879 PF01139 tRNA-splicing ligase RtcB AMED_8880 PF01435 Peptidase family M48 AMED_8882 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMED_8882 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMED_8883 PF00696 Amino acid kinase family AMED_8883 PF01842 ACT domain AMED_8883 PF13840 ACT domain AMED_8884 PF00881 Nitroreductase family AMED_8886 PF00682 HMGL-like AMED_8886 PF08502 LeuA allosteric (dimerisation) domain AMED_8887 PF08279 HTH domain AMED_8887 PF13280 AMED_8887 AMED_8888 PF00106 short chain dehydrogenase AMED_8889 PF09335 AMED_8889 AMED_8890 PF00578 AhpC/TSA family AMED_8891 PF00440 Bacterial regulatory proteins, tetR family AMED_8891 PF16925 AMED_8891 AMED_8892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMED_8892 PF03466 LysR substrate binding domain AMED_8893 PF00892 EamA-like transporter family AMED_8894 PF09335 AMED_8894 AMED_8895 PF13474 SnoaL-like domain AMED_8896 PF03795 YCII-related domain AMED_8897 PF04542 Sigma-70 region 2 AMED_8897 PF08281 Sigma-70, region 4 AMED_8898 PF00005 ABC transporter AMED_8898 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8899 PF00005 ABC transporter AMED_8899 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMED_8900 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8900 PF12911 AMED_8900 AMED_8901 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8902 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMED_8903 PF10066 AMED_8903 AMED_8904 PF00535 Glycosyl transferase family 2 AMED_8908 PF00535 Glycosyl transferase family 2 AMED_8909 PF02350 UDP-N-acetylglucosamine 2-epimerase AMED_8910 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMED_8911 PF00633 Helix-hairpin-helix motif AMED_8911 PF02132 RecR protein AMED_8911 PF13662 Toprim domain AMED_8912 PF02575 YbaB/EbfC DNA-binding family AMED_8913 PF01520 N-acetylmuramoyl-L-alanine amidase AMED_8914 PF01638 HxlR-like helix-turn-helix AMED_8915 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8916 PF00665 Integrase core domain AMED_8916 PF13276 AMED_8916 AMED_8917 PF01527 Transposase AMED_8918 PF12169 DNA polymerase III subunits gamma and tau domain III AMED_8918 PF13177 DNA polymerase III, delta subunit AMED_8919 PF03752 AMED_8919 AMED_8921 PF03029 Conserved hypothetical ATP binding protein AMED_8922 PF05331 AMED_8922 AMED_8923 PF03259 Roadblock/LC7 domain AMED_8924 PF00672 HAMP domain AMED_8924 PF08376 Nitrate and nitrite sensing AMED_8925 PF00005 ABC transporter AMED_8926 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8927 PF13379 NMT1-like family AMED_8928 PF13231 AMED_8928 AMED_8929 PF00512 His Kinase A (phospho-acceptor) domain AMED_8929 PF00672 HAMP domain AMED_8929 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_8930 PF00072 Response regulator receiver domain AMED_8930 PF00486 Transcriptional regulatory protein, C terminal AMED_8932 PF07730 Histidine kinase AMED_8933 PF00072 Response regulator receiver domain AMED_8933 PF00196 Bacterial regulatory proteins, luxR family AMED_8935 PF04075 Domain of unknown function (DUF385) AMED_8936 PF00440 Bacterial regulatory proteins, tetR family AMED_8937 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_8937 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_8938 PF00801 PKD domain AMED_8938 PF07995 Glucose / Sorbosone dehydrogenase AMED_8938 PF08310 AMED_8938 AMED_8939 PF03734 L,D-transpeptidase catalytic domain AMED_8941 PF00069 Protein kinase domain AMED_8942 PF02384 N-6 DNA Methylase AMED_8943 PF13672 Protein phosphatase 2C AMED_8946 PF01580 FtsK/SpoIIIE family AMED_8952 PF00932 Lamin Tail Domain AMED_8952 PF03372 Endonuclease/Exonuclease/phosphatase family AMED_8953 PF09587 Bacterial capsule synthesis protein PGA_cap AMED_8954 PF07858 Limonene-1,2-epoxide hydrolase catalytic domain AMED_8955 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMED_8959 PF13460 NADH(P)-binding AMED_8960 PF05532 CsbD-like AMED_8961 PF14437 AMED_8961 AMED_8963 PF01546 Peptidase family M20/M25/M40 AMED_8963 PF07687 Peptidase dimerisation domain AMED_8964 PF04185 Phosphoesterase family AMED_8964 PF05506 AMED_8964 AMED_8965 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_8966 PF03928 Domain of unknown function (DUF336) AMED_8967 PF01872 RibD C-terminal domain AMED_8968 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMED_8968 PF03129 Anticodon binding domain AMED_8969 PF13411 MerR HTH family regulatory protein AMED_8970 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8971 PF00528 Binding-protein-dependent transport system inner membrane component AMED_8972 PF00005 ABC transporter AMED_8972 PF08402 TOBE domain AMED_8973 PF13416 Bacterial extracellular solute-binding protein AMED_8974 PF00392 Bacterial regulatory proteins, gntR family AMED_8974 PF07729 FCD domain AMED_8975 PF00701 Dihydrodipicolinate synthetase family AMED_8976 PF00487 AMED_8976 AMED_8978 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMED_8978 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMED_8979 PF01037 AsnC family AMED_8979 PF13404 AsnC-type helix-turn-helix domain AMED_8980 PF13245 Part of AAA domain AMED_8981 PF00149 Calcineurin-like phosphoesterase AMED_8981 PF13385 Concanavalin A-like lectin/glucanases superfamily AMED_8982 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_8984 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_8985 PF10101 AMED_8985 AMED_8986 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_8988 PF01207 Dihydrouridine synthase (Dus) AMED_8989 PF16499 AMED_8989 AMED_8990 PF00652 Ricin-type beta-trefoil lectin domain AMED_8990 PF16499 AMED_8990 AMED_8992 PF00392 Bacterial regulatory proteins, gntR family AMED_8992 PF07702 UTRA domain AMED_8993 PF03747 ADP-ribosylglycohydrolase AMED_8994 PF00294 pfkB family carbohydrate kinase AMED_8995 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMED_8996 PF00857 Isochorismatase family AMED_8997 PF00561 alpha/beta hydrolase fold AMED_8998 PF00293 NUDIX domain AMED_8999 PF00990 GGDEF domain AMED_9001 PF03816 Cell envelope-related transcriptional attenuator domain AMED_9002 PF01895 PhoU domain AMED_9003 PF00005 ABC transporter AMED_9004 PF00528 Binding-protein-dependent transport system inner membrane component AMED_9005 PF00528 Binding-protein-dependent transport system inner membrane component AMED_9006 PF12849 PBP superfamily domain AMED_9007 PF00583 Acetyltransferase (GNAT) family AMED_9008 PF00486 Transcriptional regulatory protein, C terminal AMED_9009 PF11209 AMED_9009 AMED_9010 PF00085 Thioredoxin AMED_9011 PF14340 AMED_9011 AMED_9012 PF00581 Rhodanese-like domain AMED_9013 PF07210 AMED_9013 AMED_9015 PF08768 Domain of unknown function (DUF1794) AMED_9016 PF02682 Allophanate hydrolase subunit 1 AMED_9017 PF02626 Allophanate hydrolase subunit 2 AMED_9019 PF01063 Aminotransferase class IV AMED_9020 PF01571 Aminomethyltransferase folate-binding domain AMED_9020 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMED_9022 PF06089 AMED_9022 AMED_9024 PF11273 AMED_9024 AMED_9025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMED_9025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMED_9026 PF12822 Protein of unknown function (DUF3816) AMED_9027 PF00005 ABC transporter AMED_9028 PF02361 Cobalt transport protein AMED_9030 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_9030 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_9031 PF04892 AMED_9031 AMED_9032 PF00583 Acetyltransferase (GNAT) family AMED_9033 PF00472 RF-1 domain AMED_9034 PF00586 AIR synthase related protein, N-terminal domain AMED_9034 PF02769 AIR synthase related protein, C-terminal domain AMED_9035 PF13522 Glutamine amidotransferase domain AMED_9037 PF04149 AMED_9037 AMED_9038 PF13560 Helix-turn-helix domain AMED_9039 PF04672 S-adenosyl methyltransferase AMED_9041 PF07179 AMED_9041 AMED_9042 PF01183 Glycosyl hydrolases family 25 AMED_9043 PF01183 Glycosyl hydrolases family 25 AMED_9045 PF13576 Pentapeptide repeats (9 copies) AMED_9046 PF13936 Helix-turn-helix domain AMED_9047 PF00586 AIR synthase related protein, N-terminal domain AMED_9047 PF02769 AIR synthase related protein, C-terminal domain AMED_9048 PF00005 ABC transporter AMED_9048 PF00664 ABC transporter transmembrane region AMED_9049 PF00005 ABC transporter AMED_9049 PF00664 ABC transporter transmembrane region AMED_9050 PF13507 CobB/CobQ-like glutamine amidotransferase domain AMED_9051 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AMED_9052 PF00732 GMC oxidoreductase AMED_9052 PF05199 GMC oxidoreductase AMED_9053 PF00171 Aldehyde dehydrogenase family AMED_9054 PF07690 Major Facilitator Superfamily AMED_9055 PF01022 Bacterial regulatory protein, arsR family AMED_9056 PF13350 Tyrosine phosphatase family AMED_9057 PF13483 Beta-lactamase superfamily domain AMED_9058 PF10096 AMED_9058 AMED_9059 PF03358 NADPH-dependent FMN reductase AMED_9060 PF01259 SAICAR synthetase AMED_9061 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase AMED_9062 PF00005 ABC transporter AMED_9063 PF00528 Binding-protein-dependent transport system inner membrane component AMED_9064 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_9065 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_9066 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_9067 PF00206 Lyase AMED_9067 PF10397 Adenylosuccinate lyase C-terminus AMED_9068 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMED_9068 PF13378 Enolase C-terminal domain-like AMED_9069 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_9070 PF10282 Lactonase, 7-bladed beta-propeller AMED_9071 PF00392 Bacterial regulatory proteins, gntR family AMED_9071 PF07729 FCD domain AMED_9072 PF00440 Bacterial regulatory proteins, tetR family AMED_9072 PF13977 Bacterial transcriptional repressor AMED_9074 PF04542 Sigma-70 region 2 AMED_9074 PF08281 Sigma-70, region 4 AMED_9075 PF01212 Beta-eliminating lyase AMED_9076 PF13419 Haloacid dehalogenase-like hydrolase AMED_9077 PF04672 S-adenosyl methyltransferase AMED_9079 PF00155 Aminotransferase class I and II AMED_9080 PF01464 Transglycosylase SLT domain AMED_9080 PF06013 Proteins of 100 residues with WXG AMED_9082 PF14011 EspG family AMED_9084 PF12079 AMED_9084 AMED_9086 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMED_9086 PF02843 Phosphoribosylglycinamide synthetase, C domain AMED_9086 PF02844 Phosphoribosylglycinamide synthetase, N domain AMED_9087 PF03009 Glycerophosphoryl diester phosphodiesterase family AMED_9088 PF00144 Beta-lactamase AMED_9089 PF13520 Amino acid permease AMED_9091 PF00691 OmpA family AMED_9092 PF00294 pfkB family carbohydrate kinase AMED_9093 PF00925 GTP cyclohydrolase II AMED_9094 PF07690 Major Facilitator Superfamily AMED_9095 PF00999 Sodium/hydrogen exchanger family AMED_9096 PF00296 Luciferase-like monooxygenase AMED_9097 PF02566 OsmC-like protein AMED_9098 PF00709 Adenylosuccinate synthetase AMED_9100 PF07510 AMED_9100 AMED_9101 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AMED_9102 PF13454 FAD-NAD(P)-binding AMED_9104 PF07690 Major Facilitator Superfamily AMED_9105 PF00990 GGDEF domain AMED_9106 PF00440 Bacterial regulatory proteins, tetR family AMED_9107 PF03583 Secretory lipase AMED_9108 PF11349 AMED_9108 AMED_9110 PF01116 Fructose-bisphosphate aldolase class-II AMED_9111 PF00296 Luciferase-like monooxygenase AMED_9112 PF00248 Aldo/keto reductase family AMED_9113 PF00106 short chain dehydrogenase AMED_9114 PF13738 Pyridine nucleotide-disulphide oxidoreductase AMED_9115 PF10118 AMED_9115 AMED_9117 PF00111 2Fe-2S iron-sulfur cluster binding domain AMED_9118 PF03795 YCII-related domain AMED_9119 PF04542 Sigma-70 region 2 AMED_9119 PF08281 Sigma-70, region 4 AMED_9120 PF01979 Amidohydrolase family AMED_9122 PF09335 AMED_9122 AMED_9123 PF01850 PIN domain AMED_9125 PF01565 FAD binding domain AMED_9125 PF02913 FAD linked oxidases, C-terminal domain AMED_9126 PF01243 Pyridoxamine 5'-phosphate oxidase AMED_9127 PF01047 MarR family AMED_9128 PF07690 Major Facilitator Superfamily AMED_9128 PF13620 Carboxypeptidase regulatory-like domain AMED_9129 PF04264 YceI-like domain AMED_9130 PF09335 AMED_9130 AMED_9131 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMED_9132 PF03171 2OG-Fe(II) oxygenase superfamily AMED_9132 PF14226 non-haem dioxygenase in morphine synthesis N-terminal AMED_9133 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_9135 PF00294 pfkB family carbohydrate kinase AMED_9136 PF00005 ABC transporter AMED_9137 PF02653 AMED_9137 AMED_9138 PF13407 Periplasmic binding protein domain AMED_9139 PF00356 Bacterial regulatory proteins, lacI family AMED_9139 PF13377 Periplasmic binding protein-like domain AMED_9140 PF13377 Periplasmic binding protein-like domain AMED_9141 PF03663 Glycosyl hydrolase family 76 AMED_9142 PF00384 Molybdopterin oxidoreductase AMED_9142 PF01568 Molydopterin dinucleotide binding domain AMED_9142 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMED_9143 PF00150 Cellulase (glycosyl hydrolase family 5) AMED_9144 PF10861 AMED_9144 AMED_9146 PF03780 AMED_9146 AMED_9148 PF04542 Sigma-70 region 2 AMED_9148 PF08281 Sigma-70, region 4 AMED_9149 PF00156 Phosphoribosyl transferase domain AMED_9150 PF02687 AMED_9150 AMED_9151 PF00005 ABC transporter AMED_9152 PF00106 short chain dehydrogenase AMED_9155 PF00004 ATPase family associated with various cellular activities (AAA) AMED_9155 PF02861 Clp amino terminal domain AMED_9155 PF07724 AAA domain (Cdc48 subfamily) AMED_9155 PF10431 C-terminal, D2-small domain, of ClpB protein AMED_9156 PF07690 Major Facilitator Superfamily AMED_9157 PF12802 MarR family AMED_9158 PF00042 Globin AMED_9158 PF00175 Oxidoreductase NAD-binding domain AMED_9158 PF00970 Oxidoreductase FAD-binding domain AMED_9159 PF00042 Globin AMED_9159 PF00175 Oxidoreductase NAD-binding domain AMED_9159 PF00970 Oxidoreductase FAD-binding domain AMED_9160 PF01738 Dienelactone hydrolase family AMED_9161 PF02839 Carbohydrate binding domain AMED_9161 PF03067 Chitin binding domain AMED_9162 PF03713 Domain of unknown function (DUF305) AMED_9163 PF13411 MerR HTH family regulatory protein AMED_9164 PF00226 DnaJ domain AMED_9164 PF00684 DnaJ central domain AMED_9164 PF01556 DnaJ C terminal domain AMED_9165 PF01025 GrpE AMED_9166 PF00012 Hsp70 protein AMED_9167 PF13349 AMED_9167 AMED_9168 PF01161 Phosphatidylethanolamine-binding protein AMED_9169 PF01381 Helix-turn-helix AMED_9170 PF04149 AMED_9170 AMED_9171 PF13673 Acetyltransferase (GNAT) domain AMED_9172 PF00440 Bacterial regulatory proteins, tetR family AMED_9173 PF02754 AMED_9173 AMED_9173 PF13237 4Fe-4S dicluster domain AMED_9174 PF05331 AMED_9174 AMED_9175 PF01545 Cation efflux family AMED_9176 PF00188 Cysteine-rich secretory protein family AMED_9177 PF01345 AMED_9177 AMED_9178 PF01047 MarR family AMED_9179 PF01494 FAD binding domain AMED_9180 PF00692 dUTPase AMED_9181 PF09995 AMED_9181 AMED_9182 PF12680 SnoaL-like domain AMED_9183 PF04542 Sigma-70 region 2 AMED_9183 PF08281 Sigma-70, region 4 AMED_9184 PF03795 YCII-related domain AMED_9185 PF00067 Cytochrome P450 AMED_9187 PF04075 Domain of unknown function (DUF385) AMED_9188 PF13302 Acetyltransferase (GNAT) domain AMED_9189 PF04237 YjbR AMED_9190 PF00149 Calcineurin-like phosphoesterase AMED_9190 PF02872 5'-nucleotidase, C-terminal domain AMED_9191 PF12697 Alpha/beta hydrolase family AMED_9192 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_9193 PF04892 AMED_9193 AMED_9194 PF03167 Uracil DNA glycosylase superfamily AMED_9195 PF00072 Response regulator receiver domain AMED_9195 PF00196 Bacterial regulatory proteins, luxR family AMED_9196 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMED_9196 PF02770 Acyl-CoA dehydrogenase, middle domain AMED_9196 PF12418 AMED_9196 AMED_9196 PF12806 AMED_9196 AMED_9198 PF07690 Major Facilitator Superfamily AMED_9199 PF13560 Helix-turn-helix domain AMED_9200 PF13855 Leucine rich repeat AMED_9201 PF04294 AMED_9201 AMED_9201 PF12229 Putative peptidoglycan binding domain AMED_9202 PF00166 Chaperonin 10 Kd subunit AMED_9203 PF00578 AhpC/TSA family AMED_9203 PF01436 NHL repeat AMED_9205 PF10604 Polyketide cyclase / dehydrase and lipid transport AMED_9207 PF00005 ABC transporter AMED_9208 PF00528 Binding-protein-dependent transport system inner membrane component AMED_9209 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMED_9210 PF14403 AMED_9210 AMED_9211 PF04168 AMED_9211 AMED_9212 PF01841 Transglutaminase-like superfamily AMED_9212 PF08379 AMED_9212 AMED_9214 PF00440 Bacterial regulatory proteins, tetR family AMED_9215 PF01546 Peptidase family M20/M25/M40 AMED_9215 PF07687 Peptidase dimerisation domain AMED_9216 PF00676 Dehydrogenase E1 component AMED_9217 PF02779 Transketolase, pyrimidine binding domain AMED_9217 PF02780 Transketolase, C-terminal domain AMED_9218 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMED_9218 PF00364 Biotin-requiring enzyme AMED_9218 PF02817 e3 binding domain AMED_9219 PF00440 Bacterial regulatory proteins, tetR family AMED_9220 PF00005 ABC transporter AMED_9220 PF00664 ABC transporter transmembrane region AMED_9221 PF13602 Zinc-binding dehydrogenase AMED_9222 PF00440 Bacterial regulatory proteins, tetR family AMED_9223 PF04186 AMED_9223 AMED_9224 PF03852 DNA mismatch endonuclease Vsr AMED_9225 PF00145 C-5 cytosine-specific DNA methylase AMED_9226 PF00176 SNF2 family N-terminal domain AMED_9229 PF02036 SCP-2 sterol transfer family AMED_9230 PF02036 SCP-2 sterol transfer family AMED_9231 PF00440 Bacterial regulatory proteins, tetR family AMED_9232 PF01575 MaoC like domain AMED_9233 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_9234 PF00108 Thiolase, N-terminal domain AMED_9234 PF02803 Thiolase, C-terminal domain AMED_9235 PF07681 AMED_9235 AMED_9236 PF07739 TipAS antibiotic-recognition domain AMED_9236 PF13411 MerR HTH family regulatory protein AMED_9238 PF13191 AAA ATPase domain AMED_9240 PF12802 MarR family AMED_9240 PF13673 Acetyltransferase (GNAT) domain AMED_9241 PF02627 Carboxymuconolactone decarboxylase family AMED_9242 PF05875 AMED_9242 AMED_9244 PF11755 AMED_9244 AMED_9245 PF00561 alpha/beta hydrolase fold AMED_9245 PF08386 TAP-like protein AMED_9246 PF13560 Helix-turn-helix domain AMED_9247 PF08445 FR47-like protein AMED_9248 PF14436 AMED_9248 AMED_9250 PF00005 ABC transporter AMED_9251 PF00296 Luciferase-like monooxygenase AMED_9252 PF00296 Luciferase-like monooxygenase AMED_9253 PF00821 Phosphoenolpyruvate carboxykinase AMED_9255 PF00350 Dynamin family AMED_9256 PF01025 GrpE AMED_9258 PF00350 Dynamin family AMED_9259 PF07730 Histidine kinase AMED_9260 PF00072 Response regulator receiver domain AMED_9260 PF00196 Bacterial regulatory proteins, luxR family AMED_9261 PF00106 short chain dehydrogenase AMED_9262 PF00440 Bacterial regulatory proteins, tetR family AMED_9263 PF00005 ABC transporter AMED_9264 PF12730 AMED_9264 AMED_9265 PF00005 ABC transporter AMED_9268 PF02390 Putative methyltransferase AMED_9269 PF02687 AMED_9269 AMED_9270 PF00005 ABC transporter AMED_9271 PF07730 Histidine kinase AMED_9272 PF00072 Response regulator receiver domain AMED_9272 PF00196 Bacterial regulatory proteins, luxR family AMED_9275 PF01979 Amidohydrolase family AMED_9276 PF00106 short chain dehydrogenase AMED_9277 PF01345 AMED_9277 AMED_9277 PF05738 Cna protein B-type domain AMED_9277 PF13620 Carboxypeptidase regulatory-like domain AMED_9278 PF05787 Bacterial protein of unknown function (DUF839) AMED_9279 PF07690 Major Facilitator Superfamily AMED_9280 PF01047 MarR family AMED_9281 PF13419 Haloacid dehalogenase-like hydrolase AMED_9283 PF04542 Sigma-70 region 2 AMED_9283 PF08281 Sigma-70, region 4 AMED_9284 PF01658 Myo-inositol-1-phosphate synthase AMED_9285 PF03551 Transcriptional regulator PadR-like family AMED_9287 PF00905 Penicillin binding protein transpeptidase domain AMED_9287 PF00912 Transglycosylase AMED_9288 PF00905 Penicillin binding protein transpeptidase domain AMED_9288 PF00912 Transglycosylase AMED_9289 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMED_9289 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMED_9290 PF00480 ROK family AMED_9290 PF12802 MarR family AMED_9291 PF09594 AMED_9291 AMED_9292 PF01261 Xylose isomerase-like TIM barrel AMED_9296 PF01250 Ribosomal protein S6 AMED_9297 PF00436 Single-strand binding protein family AMED_9298 PF01084 Ribosomal protein S18 AMED_9299 PF01281 Ribosomal protein L9, N-terminal domain AMED_9299 PF03948 Ribosomal protein L9, C-terminal domain AMED_9301 PF12079 AMED_9301 AMED_9303 PF14011 EspG family AMED_9304 PF00772 DnaB-like helicase N terminal domain AMED_9304 PF03796 DnaB-like helicase C terminal domain AMED_9305 PF12802 MarR family AMED_9307 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMED_9310 PF01594 AMED_9310 AMED_9311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_9312 PF00072 Response regulator receiver domain AMED_9312 PF00196 Bacterial regulatory proteins, luxR family AMED_9314 PF08044 AMED_9314 AMED_9315 PF07690 Major Facilitator Superfamily AMED_9316 PF00391 PEP-utilising enzyme, mobile domain AMED_9316 PF02896 PEP-utilising enzyme, TIM barrel domain AMED_9316 PF05524 PEP-utilising enzyme, N-terminal AMED_9318 PF00294 pfkB family carbohydrate kinase AMED_9322 PF02575 YbaB/EbfC DNA-binding family AMED_9325 PF14011 EspG family AMED_9327 PF12079 AMED_9327 AMED_9328 PF00440 Bacterial regulatory proteins, tetR family AMED_9329 PF13561 Enoyl-(Acyl carrier protein) reductase AMED_9330 PF00133 tRNA synthetases class I (I, L, M and V) AMED_9330 PF08264 Anticodon-binding domain of tRNA AMED_9330 PF09334 tRNA synthetases class I (M) AMED_9330 PF13603 Leucyl-tRNA synthetase, Domain 2 AMED_9331 PF13449 Esterase-like activity of phytase AMED_9332 PF13630 AMED_9332 AMED_9333 PF02622 Uncharacterized ACR, COG1678 AMED_9334 PF07690 Major Facilitator Superfamily AMED_9335 PF02575 YbaB/EbfC DNA-binding family AMED_9338 PF01129 NAD:arginine ADP-ribosyltransferase AMED_9338 PF04607 Region found in RelA / SpoT proteins AMED_9338 PF15644 Papain fold toxin 1 AMED_9340 PF14021 AMED_9340 AMED_9341 PF03747 ADP-ribosylglycohydrolase AMED_9341 PF15567 AMED_9341 AMED_9342 PF03747 ADP-ribosylglycohydrolase AMED_9342 PF15567 AMED_9342 AMED_9343 PF14021 AMED_9343 AMED_9345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMED_9346 PF01743 Poly A polymerase head domain AMED_9346 PF01966 HD domain AMED_9346 PF12627 Probable RNA and SrmB- binding site of polymerase A AMED_9347 PF00293 NUDIX domain AMED_9349 PF03023 AMED_9349 AMED_9351 PF04542 Sigma-70 region 2 AMED_9351 PF08281 Sigma-70, region 4 AMED_9353 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMED_9354 PF00085 Thioredoxin AMED_9355 PF01471 Putative peptidoglycan binding domain AMED_9355 PF01520 N-acetylmuramoyl-L-alanine amidase AMED_9356 PF08445 FR47-like protein AMED_9357 PF00155 Aminotransferase class I and II AMED_9358 PF01820 D-ala D-ala ligase N-terminus AMED_9358 PF07478 D-ala D-ala ligase C-terminus AMED_9359 PF02195 ParB-like nuclease domain AMED_9360 PF13614 AAA domain AMED_9361 PF02527 rRNA small subunit methyltransferase G AMED_9363 PF01424 R3H domain AMED_9364 PF02096 60Kd inner membrane protein AMED_9365 PF01809 AMED_9365 AMED_9366 PF00468 Ribosomal protein L34