AMED_0001 SM00382 ATPases associated with a variety of cellular activities AMED_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain AMED_0002 SM00480 DNA polymerase III beta subunit AMED_0003 SM01350 AMED_0003 AMED_0004 SM00382 ATPases associated with a variety of cellular activities AMED_0006 SM00387 Histidine kinase-like ATPases AMED_0006 SM00433 TopoisomeraseII AMED_0007 SM00434 DNA Topoisomerase IV AMED_0019 SM00530 Helix-turn-helix XRE-family like proteins AMED_0025 SM00382 ATPases associated with a variety of cellular activities AMED_0027 SM00862 Transcriptional regulatory protein, C terminal AMED_0027 SM01043 Bacterial transcriptional activator domain AMED_0043 SM00382 ATPases associated with a variety of cellular activities AMED_0045 SM00421 helix_turn_helix, Lux Regulon AMED_0045 SM00448 cheY-homologous receiver domain AMED_0048 SM00382 ATPases associated with a variety of cellular activities AMED_0051 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_0051 SM00740 AMED_0051 AMED_0052 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_0055 SM00331 Sigma factor PP2C-like phosphatases AMED_0055 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMED_0056 SM00240 Forkhead associated domain AMED_0057 SM00240 Forkhead associated domain AMED_0058 SM00020 Trypsin-like serine protease AMED_0059 SM00020 Trypsin-like serine protease AMED_0066 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_0066 SM00895 AMED_0066 AMED_0070 SM00382 ATPases associated with a variety of cellular activities AMED_0071 SM00382 ATPases associated with a variety of cellular activities AMED_0076 SM00421 helix_turn_helix, Lux Regulon AMED_0082 SM01400 AMED_0082 AMED_0090 SM00530 Helix-turn-helix XRE-family like proteins AMED_0097 SM00382 ATPases associated with a variety of cellular activities AMED_0104 SM00822 AMED_0104 AMED_0105 SM00984 UDP binding domain AMED_0112 SM00530 Helix-turn-helix XRE-family like proteins AMED_0114 SM00421 helix_turn_helix, Lux Regulon AMED_0114 SM00448 cheY-homologous receiver domain AMED_0130 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_0130 SM01232 AMED_0130 AMED_0131 SM00387 Histidine kinase-like ATPases AMED_0133 SM00606 Cellulose Binding Domain Type IV AMED_0134 SM00448 cheY-homologous receiver domain AMED_0134 SM00850 LytTr DNA-binding domain AMED_0137 SM00450 Rhodanese Homology Domain AMED_0156 SM00327 von Willebrand factor (vWF) type A domain AMED_0159 SM00346 helix_turn_helix isocitrate lyase regulation AMED_0162 SM00245 tail specific protease AMED_0165 SM00382 ATPases associated with a variety of cellular activities AMED_0167 SM00421 helix_turn_helix, Lux Regulon AMED_0167 SM00448 cheY-homologous receiver domain AMED_0171 SM00894 Excalibur calcium-binding domain AMED_0172 SM00479 AMED_0172 AMED_0180 SM00506 Appr-1"-p processing enzyme AMED_0182 SM00855 Phosphoglycerate mutase family AMED_0198 SM00530 Helix-turn-helix XRE-family like proteins AMED_0199 SM00028 Tetratricopeptide repeats AMED_0199 SM00862 Transcriptional regulatory protein, C terminal AMED_0199 SM01043 Bacterial transcriptional activator domain AMED_0211 SM00822 AMED_0211 AMED_0220 SM00563 Phosphate acyltransferases AMED_0225 SM00014 Acid phosphatase homologues AMED_0239 SM00382 ATPases associated with a variety of cellular activities AMED_0243 SM00829 Enoylreductase AMED_0246 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_0253 SM00822 AMED_0253 AMED_0255 SM00448 cheY-homologous receiver domain AMED_0256 SM00387 Histidine kinase-like ATPases AMED_0257 SM00382 ATPases associated with a variety of cellular activities AMED_0262 SM00421 helix_turn_helix, Lux Regulon AMED_0265 SM00344 helix_turn_helix ASNC type AMED_0267 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AMED_0267 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_0269 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_0269 SM00895 AMED_0269 AMED_0277 SM00636 AMED_0277 AMED_0277 SM00637 AMED_0277 AMED_0278 SM00637 AMED_0278 AMED_0281 SM00671 Sel1-like repeats. AMED_0299 SM00382 ATPases associated with a variety of cellular activities AMED_0315 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_0321 SM00998 Adenylosuccinate lyase C-terminus AMED_0333 SM00020 Trypsin-like serine protease AMED_0336 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_0336 SM01260 AMED_0336 AMED_0341 SM00357 Cold shock protein domain AMED_0347 SM00062 Bacterial periplasmic substrate-binding proteins AMED_0348 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_0358 SM00943 Bifunctional DNA primase/polymerase, N-terminal AMED_0382 SM00052 Putative diguanylate phosphodiesterase AMED_0382 SM00091 PAS domain AMED_0382 SM00267 diguanylate cyclase AMED_0390 SM00346 helix_turn_helix isocitrate lyase regulation AMED_0394 SM01350 AMED_0394 AMED_0395 SM00849 Metallo-beta-lactamase superfamily AMED_0396 SM00530 Helix-turn-helix XRE-family like proteins AMED_0417 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_0426 SM00530 Helix-turn-helix XRE-family like proteins AMED_0439 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_0441 SM00829 Enoylreductase AMED_0444 SM00829 Enoylreductase AMED_0456 SM00855 Phosphoglycerate mutase family AMED_0457 SM00421 helix_turn_helix, Lux Regulon AMED_0459 SM00387 Histidine kinase-like ATPases AMED_0459 SM00388 His Kinase A (phosphoacceptor) domain AMED_0460 SM00448 cheY-homologous receiver domain AMED_0460 SM00862 Transcriptional regulatory protein, C terminal AMED_0469 SM00563 Phosphate acyltransferases AMED_0470 SM00387 Histidine kinase-like ATPases AMED_0471 SM00421 helix_turn_helix, Lux Regulon AMED_0471 SM00448 cheY-homologous receiver domain AMED_0479 SM00881 CoA binding domain AMED_0484 SM00342 helix_turn_helix, arabinose operon control protein AMED_0485 SM01004 Delta-aminolevulinic acid dehydratase AMED_0490 SM00382 ATPases associated with a variety of cellular activities AMED_0495 SM00855 Phosphoglycerate mutase family AMED_0503 SM00344 helix_turn_helix ASNC type AMED_0516 SM00862 Transcriptional regulatory protein, C terminal AMED_0516 SM01043 Bacterial transcriptional activator domain AMED_0525 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMED_0526 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMED_0526 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMED_0543 SM00344 helix_turn_helix ASNC type AMED_0547 SM00984 UDP binding domain AMED_0554 SM00710 Parallel beta-helix repeats AMED_0557 SM00014 Acid phosphatase homologues AMED_0559 SM00710 Parallel beta-helix repeats AMED_0582 SM00382 ATPases associated with a variety of cellular activities AMED_0582 SM00464 Found in ATP-dependent protease La (LON) AMED_0585 SM00052 Putative diguanylate phosphodiesterase AMED_0585 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_0585 SM00267 diguanylate cyclase AMED_0591 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_0594 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMED_0595 SM00649 Ribosomal protein L11/L12 AMED_0601 SM00382 ATPases associated with a variety of cellular activities AMED_0617 SM00822 AMED_0617 AMED_0617 SM00823 Phosphopantetheine attachment site AMED_0617 SM00825 Beta-ketoacyl synthase AMED_0617 SM00826 AMED_0617 AMED_0617 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_0617 SM01294 AMED_0617 AMED_0618 SM00822 AMED_0618 AMED_0618 SM00823 Phosphopantetheine attachment site AMED_0618 SM00825 Beta-ketoacyl synthase AMED_0618 SM00826 AMED_0618 AMED_0618 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_0618 SM01294 AMED_0618 AMED_0619 SM00822 AMED_0619 AMED_0619 SM00823 Phosphopantetheine attachment site AMED_0619 SM00825 Beta-ketoacyl synthase AMED_0619 SM00826 AMED_0619 AMED_0619 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_0619 SM01294 AMED_0619 AMED_0620 SM00822 AMED_0620 AMED_0620 SM00823 Phosphopantetheine attachment site AMED_0620 SM00825 Beta-ketoacyl synthase AMED_0620 SM00826 AMED_0620 AMED_0620 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_0620 SM01294 AMED_0620 AMED_0621 SM00822 AMED_0621 AMED_0621 SM00823 Phosphopantetheine attachment site AMED_0621 SM00825 Beta-ketoacyl synthase AMED_0621 SM00826 AMED_0621 AMED_0621 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_0621 SM01294 AMED_0621 AMED_0648 SM00824 Thioesterase AMED_0650 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. AMED_0652 SM00861 Transketolase, pyrimidine binding domain AMED_0655 SM00421 helix_turn_helix, Lux Regulon AMED_0657 SM00663 RNA polymerase I subunit A N-terminus AMED_0660 SM00344 helix_turn_helix ASNC type AMED_0663 SM00100 Cyclic nucleotide-monophosphate binding domain AMED_0674 SM00838 Elongation factor G C-terminus AMED_0674 SM00889 Elongation factor G, domain IV AMED_0676 SM01403 AMED_0676 AMED_0680 SM01382 AMED_0680 AMED_0680 SM01383 AMED_0680 AMED_0683 SM00322 K homology RNA-binding domain AMED_0687 SM01374 AMED_0687 AMED_0688 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMED_0707 SM00363 S4 RNA-binding domain AMED_0707 SM01390 AMED_0707 AMED_0708 SM00662 RNA polymerases D AMED_0738 SM00420 helix_turn_helix, Deoxyribose operon repressor AMED_0738 SM01134 AMED_0738 AMED_0740 SM00382 ATPases associated with a variety of cellular activities AMED_0741 SM01005 Alanine racemase, C-terminal domain AMED_0755 SM00644 AMED_0755 AMED_0757 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_0758 SM00226 Low molecular weight phosphatase family AMED_0760 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_0762 SM00883 Chaperonin 10 Kd subunit AMED_0765 SM00422 helix_turn_helix, mercury resistance AMED_0767 SM00421 helix_turn_helix, Lux Regulon AMED_0767 SM00448 cheY-homologous receiver domain AMED_0771 SM00116 Domain in cystathionine beta-synthase and other proteins. AMED_0771 SM01240 AMED_0771 AMED_0773 SM01240 AMED_0773 AMED_0787 SM00387 Histidine kinase-like ATPases AMED_0788 SM00421 helix_turn_helix, Lux Regulon AMED_0788 SM00448 cheY-homologous receiver domain AMED_0792 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_0796 SM00830 Chorismate mutase type II AMED_0803 SM00881 CoA binding domain AMED_0807 SM00798 AICARFT/IMPCHase bienzyme AMED_0807 SM00851 MGS-like domain AMED_0815 SM00481 DNA polymerase alpha chain like domain AMED_0822 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_0827 SM00342 helix_turn_helix, arabinose operon control protein AMED_0833 SM01329 AMED_0833 AMED_0837 SM00849 Metallo-beta-lactamase superfamily AMED_0853 SM00776 AMED_0853 AMED_0856 SM00382 ATPases associated with a variety of cellular activities AMED_0860 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AMED_0865 SM00487 DEAD-like helicases superfamily AMED_0865 SM00490 helicase superfamily c-terminal domain AMED_0870 SM00829 Enoylreductase AMED_0882 SM01133 AMED_0882 AMED_0890 SM00422 helix_turn_helix, mercury resistance AMED_0896 SM00448 cheY-homologous receiver domain AMED_0896 SM00862 Transcriptional regulatory protein, C terminal AMED_0897 SM00387 Histidine kinase-like ATPases AMED_0897 SM00388 His Kinase A (phosphoacceptor) domain AMED_0911 SM00422 helix_turn_helix, mercury resistance AMED_0912 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_0934 SM00878 Biotin carboxylase C-terminal domain AMED_0944 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_0948 SM00421 helix_turn_helix, Lux Regulon AMED_0948 SM00448 cheY-homologous receiver domain AMED_0951 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_0957 SM00822 AMED_0957 AMED_0958 SM00342 helix_turn_helix, arabinose operon control protein AMED_0959 SM00460 Transglutaminase/protease-like homologues AMED_0971 SM00421 helix_turn_helix, Lux Regulon AMED_0971 SM00448 cheY-homologous receiver domain AMED_0980 SM00448 cheY-homologous receiver domain AMED_0980 SM00862 Transcriptional regulatory protein, C terminal AMED_0981 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_0981 SM00387 Histidine kinase-like ATPases AMED_0982 SM00421 helix_turn_helix, Lux Regulon AMED_0983 SM00421 helix_turn_helix, Lux Regulon AMED_0983 SM00448 cheY-homologous receiver domain AMED_0993 SM01001 AIR carboxylase AMED_1019 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1030 SM00880 AMED_1030 AMED_1035 SM00636 AMED_1035 AMED_1038 SM00530 Helix-turn-helix XRE-family like proteins AMED_1039 SM00495 Chitin-binding domain type 3 AMED_1040 SM00530 Helix-turn-helix XRE-family like proteins AMED_1049 SM00563 Phosphate acyltransferases AMED_1051 SM00382 ATPases associated with a variety of cellular activities AMED_1052 SM00382 ATPases associated with a variety of cellular activities AMED_1069 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMED_1073 SM00924 MgtE intracellular N domain AMED_1075 SM00244 prohibitin homologues AMED_1083 SM00382 ATPases associated with a variety of cellular activities AMED_1088 SM00421 helix_turn_helix, Lux Regulon AMED_1088 SM00448 cheY-homologous receiver domain AMED_1102 SM00481 DNA polymerase alpha chain like domain AMED_1108 SM00487 DEAD-like helicases superfamily AMED_1108 SM00490 helicase superfamily c-terminal domain AMED_1119 SM00450 Rhodanese Homology Domain AMED_1121 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMED_1126 SM00862 Transcriptional regulatory protein, C terminal AMED_1160 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_1164 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1164 SM00895 AMED_1164 AMED_1169 SM00226 Low molecular weight phosphatase family AMED_1171 SM00830 Chorismate mutase type II AMED_1174 SM00855 Phosphoglycerate mutase family AMED_1177 SM00421 helix_turn_helix, Lux Regulon AMED_1193 SM00955 AMED_1193 AMED_1200 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1200 SM00895 AMED_1200 AMED_1202 SM00382 ATPases associated with a variety of cellular activities AMED_1216 SM00957 SecA DEAD-like domain AMED_1216 SM00958 SecA preprotein cross-linking domain AMED_1220 SM01230 AMED_1220 AMED_1222 SM00344 helix_turn_helix ASNC type AMED_1223 SM00450 Rhodanese Homology Domain AMED_1229 SM01230 AMED_1229 AMED_1233 SM00341 Helicase and RNase D C-terminal AMED_1244 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMED_1250 SM00937 AMED_1250 AMED_1251 SM00382 ATPases associated with a variety of cellular activities AMED_1258 SM00421 helix_turn_helix, Lux Regulon AMED_1258 SM00448 cheY-homologous receiver domain AMED_1262 SM00267 diguanylate cyclase AMED_1264 SM00346 helix_turn_helix isocitrate lyase regulation AMED_1278 SM00421 helix_turn_helix, Lux Regulon AMED_1278 SM00448 cheY-homologous receiver domain AMED_1281 SM00028 Tetratricopeptide repeats AMED_1283 SM00382 ATPases associated with a variety of cellular activities AMED_1284 SM00487 DEAD-like helicases superfamily AMED_1284 SM00490 helicase superfamily c-terminal domain AMED_1284 SM00847 Helicase associated domain (HA2) Add an annotation AMED_1285 SM00062 Bacterial periplasmic substrate-binding proteins AMED_1293 SM00342 helix_turn_helix, arabinose operon control protein AMED_1296 SM00458 Ricin-type beta-trefoil AMED_1297 SM00434 DNA Topoisomerase IV AMED_1298 SM00387 Histidine kinase-like ATPases AMED_1298 SM00433 TopoisomeraseII AMED_1306 SM00560 LamG-like jellyroll fold domain AMED_1309 SM00382 ATPases associated with a variety of cellular activities AMED_1311 SM00354 helix_turn _helix lactose operon repressor AMED_1318 SM00382 ATPases associated with a variety of cellular activities AMED_1329 SM00458 Ricin-type beta-trefoil AMED_1337 SM00060 Fibronectin type 3 domain AMED_1346 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMED_1356 SM00382 ATPases associated with a variety of cellular activities AMED_1366 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_1367 SM00849 Metallo-beta-lactamase superfamily AMED_1372 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1372 SM00866 AMED_1372 AMED_1373 SM00028 Tetratricopeptide repeats AMED_1373 SM00862 Transcriptional regulatory protein, C terminal AMED_1373 SM01043 Bacterial transcriptional activator domain AMED_1377 SM00382 ATPases associated with a variety of cellular activities AMED_1378 SM00382 ATPases associated with a variety of cellular activities AMED_1386 SM00421 helix_turn_helix, Lux Regulon AMED_1386 SM00448 cheY-homologous receiver domain AMED_1387 SM00387 Histidine kinase-like ATPases AMED_1388 SM00382 ATPases associated with a variety of cellular activities AMED_1393 SM00382 ATPases associated with a variety of cellular activities AMED_1405 SM00458 Ricin-type beta-trefoil AMED_1416 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_1425 SM00829 Enoylreductase AMED_1427 SM00829 Enoylreductase AMED_1428 SM00530 Helix-turn-helix XRE-family like proteins AMED_1430 SM00387 Histidine kinase-like ATPases AMED_1431 SM00960 Roadblock/LC7 domain AMED_1438 SM00822 AMED_1438 AMED_1454 SM00028 Tetratricopeptide repeats AMED_1455 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_1457 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_1459 SM00829 Enoylreductase AMED_1464 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_1465 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_1466 SM00421 helix_turn_helix, Lux Regulon AMED_1466 SM00448 cheY-homologous receiver domain AMED_1469 SM00458 Ricin-type beta-trefoil AMED_1472 SM00448 cheY-homologous receiver domain AMED_1473 SM00100 Cyclic nucleotide-monophosphate binding domain AMED_1473 SM00387 Histidine kinase-like ATPases AMED_1477 SM00327 von Willebrand factor (vWF) type A domain AMED_1486 SM00060 Fibronectin type 3 domain AMED_1487 SM00421 helix_turn_helix, Lux Regulon AMED_1500 SM00062 Bacterial periplasmic substrate-binding proteins AMED_1502 SM00382 ATPases associated with a variety of cellular activities AMED_1507 SM00382 ATPases associated with a variety of cellular activities AMED_1513 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1513 SM00895 AMED_1513 AMED_1515 SM00382 ATPases associated with a variety of cellular activities AMED_1517 SM00854 Bacterial capsule synthesis protein PGA_cap AMED_1519 SM00100 Cyclic nucleotide-monophosphate binding domain AMED_1520 SM00100 Cyclic nucleotide-monophosphate binding domain AMED_1527 SM00028 Tetratricopeptide repeats AMED_1527 SM00862 Transcriptional regulatory protein, C terminal AMED_1527 SM01043 Bacterial transcriptional activator domain AMED_1532 SM00812 Alpha-L-fucosidase AMED_1535 SM00944 Pro-kumamolisin, activation domain AMED_1536 SM00387 Histidine kinase-like ATPases AMED_1542 SM00382 ATPases associated with a variety of cellular activities AMED_1546 SM00487 DEAD-like helicases superfamily AMED_1546 SM00490 helicase superfamily c-terminal domain AMED_1551 SM00316 Ribosomal protein S1-like RNA-binding domain AMED_1551 SM00732 Likely ribonuclease with RNase H fold. AMED_1552 SM00636 AMED_1552 AMED_1556 SM00342 helix_turn_helix, arabinose operon control protein AMED_1570 SM00530 Helix-turn-helix XRE-family like proteins AMED_1574 SM00829 Enoylreductase AMED_1579 SM00382 ATPases associated with a variety of cellular activities AMED_1581 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1588 SM00448 cheY-homologous receiver domain AMED_1588 SM00850 LytTr DNA-binding domain AMED_1589 SM00387 Histidine kinase-like ATPases AMED_1593 SM00382 ATPases associated with a variety of cellular activities AMED_1595 SM00354 helix_turn _helix lactose operon repressor AMED_1599 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_1610 SM00450 Rhodanese Homology Domain AMED_1613 SM00382 ATPases associated with a variety of cellular activities AMED_1621 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1625 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_1627 SM00849 Metallo-beta-lactamase superfamily AMED_1637 SM00530 Helix-turn-helix XRE-family like proteins AMED_1653 SM00893 Electron transfer flavoprotein domain AMED_1654 SM00893 Electron transfer flavoprotein domain AMED_1656 SM00563 Phosphate acyltransferases AMED_1657 SM00829 Enoylreductase AMED_1658 SM00421 helix_turn_helix, Lux Regulon AMED_1665 SM00849 Metallo-beta-lactamase superfamily AMED_1669 SM00292 breast cancer carboxy-terminal domain AMED_1669 SM00532 Ligase N family AMED_1674 SM00845 GatB domain AMED_1690 SM00248 ankyrin repeats AMED_1696 SM01329 AMED_1696 AMED_1697 SM00917 LeuA allosteric (dimerisation) domain AMED_1701 SM00411 bacterial (prokaryotic) histone like domain AMED_1702 SM00028 Tetratricopeptide repeats AMED_1712 SM00411 bacterial (prokaryotic) histone like domain AMED_1718 SM01217 AMED_1718 AMED_1721 SM00849 Metallo-beta-lactamase superfamily AMED_1722 SM00346 helix_turn_helix isocitrate lyase regulation AMED_1725 SM00411 bacterial (prokaryotic) histone like domain AMED_1726 SM00028 Tetratricopeptide repeats AMED_1726 SM00862 Transcriptional regulatory protein, C terminal AMED_1726 SM01043 Bacterial transcriptional activator domain AMED_1727 SM00855 Phosphoglycerate mutase family AMED_1730 SM00563 Phosphate acyltransferases AMED_1733 SM00870 AMED_1733 AMED_1736 SM00900 AMED_1736 AMED_1738 SM00448 cheY-homologous receiver domain AMED_1738 SM00862 Transcriptional regulatory protein, C terminal AMED_1739 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_1739 SM00387 Histidine kinase-like ATPases AMED_1739 SM00388 His Kinase A (phosphoacceptor) domain AMED_1741 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1749 SM00986 Uracil DNA glycosylase superfamily AMED_1749 SM00987 UreE urease accessory protein, C-terminal domain AMED_1752 SM01120 AMED_1752 AMED_1752 SM01121 AMED_1752 AMED_1753 SM00487 DEAD-like helicases superfamily AMED_1753 SM00490 helicase superfamily c-terminal domain AMED_1761 SM00878 Biotin carboxylase C-terminal domain AMED_1763 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1786 SM00320 WD40 repeats AMED_1796 SM00358 Double-stranded RNA binding motif AMED_1796 SM00535 Ribonuclease III family AMED_1798 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_1798 SM01232 AMED_1798 AMED_1807 SM01230 AMED_1807 AMED_1817 SM00729 Elongator protein 3, MiaB family, Radical SAM AMED_1821 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1821 SM00895 AMED_1821 AMED_1824 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1827 SM00822 AMED_1827 AMED_1830 SM00422 helix_turn_helix, mercury resistance AMED_1834 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_1837 SM00382 ATPases associated with a variety of cellular activities AMED_1839 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_1839 SM00895 AMED_1839 AMED_1857 SM00882 Coenzyme A transferase AMED_1858 SM00882 Coenzyme A transferase AMED_1864 SM00346 helix_turn_helix isocitrate lyase regulation AMED_1866 SM00382 ATPases associated with a variety of cellular activities AMED_1868 SM00327 von Willebrand factor (vWF) type A domain AMED_1871 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_1872 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMED_1874 SM00267 diguanylate cyclase AMED_1878 SM00060 Fibronectin type 3 domain AMED_1885 SM00382 ATPases associated with a variety of cellular activities AMED_1889 SM00354 helix_turn _helix lactose operon repressor AMED_1896 SM00387 Histidine kinase-like ATPases AMED_1896 SM00388 His Kinase A (phosphoacceptor) domain AMED_1897 SM00448 cheY-homologous receiver domain AMED_1897 SM00862 Transcriptional regulatory protein, C terminal AMED_1903 SM00968 SMC proteins Flexible Hinge Domain AMED_1907 SM00382 ATPases associated with a variety of cellular activities AMED_1907 SM00962 SRP54-type protein, GTPase domain AMED_1907 SM00963 SRP54-type protein, helical bundle domain AMED_1910 SM00346 helix_turn_helix isocitrate lyase regulation AMED_1917 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_1919 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMED_1922 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_1923 SM00458 Ricin-type beta-trefoil AMED_1933 SM00881 CoA binding domain AMED_1942 SM00938 Nitrogen regulatory protein P-II AMED_1943 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMED_1947 SM00267 diguanylate cyclase AMED_1948 SM00822 AMED_1948 AMED_1951 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AMED_1952 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_1953 SM00382 ATPases associated with a variety of cellular activities AMED_1954 SM00382 ATPases associated with a variety of cellular activities AMED_1954 SM00962 SRP54-type protein, GTPase domain AMED_1954 SM00963 SRP54-type protein, helical bundle domain AMED_1968 SM00382 ATPases associated with a variety of cellular activities AMED_1985 SM00861 Transketolase, pyrimidine binding domain AMED_1989 SM00758 AMED_1989 AMED_1996 SM00382 ATPases associated with a variety of cellular activities AMED_1998 SM00530 Helix-turn-helix XRE-family like proteins AMED_2006 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMED_2008 SM00422 helix_turn_helix, mercury resistance AMED_2015 SM00829 Enoylreductase AMED_2016 SM00530 Helix-turn-helix XRE-family like proteins AMED_2025 SM00822 AMED_2025 AMED_2029 SM00028 Tetratricopeptide repeats AMED_2029 SM00530 Helix-turn-helix XRE-family like proteins AMED_2029 SM00862 Transcriptional regulatory protein, C terminal AMED_2029 SM01043 Bacterial transcriptional activator domain AMED_2032 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_2041 SM00342 helix_turn_helix, arabinose operon control protein AMED_2048 SM00382 ATPases associated with a variety of cellular activities AMED_2051 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_2051 SM00895 AMED_2051 AMED_2055 SM00020 Trypsin-like serine protease AMED_2058 SM00487 DEAD-like helicases superfamily AMED_2058 SM00490 helicase superfamily c-terminal domain AMED_2059 SM00090 RIO-like kinase AMED_2065 SM00849 Metallo-beta-lactamase superfamily AMED_2084 SM00421 helix_turn_helix, Lux Regulon AMED_2084 SM00448 cheY-homologous receiver domain AMED_2090 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMED_2090 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMED_2099 SM00825 Beta-ketoacyl synthase AMED_2102 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_2105 SM00382 ATPases associated with a variety of cellular activities AMED_2111 SM00822 AMED_2111 AMED_2116 SM00857 Resolvase, N terminal domain AMED_2129 SM00020 Trypsin-like serine protease AMED_2132 SM00530 Helix-turn-helix XRE-family like proteins AMED_2141 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_2146 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_2146 SM00895 AMED_2146 AMED_2148 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_2152 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_2152 SM00895 AMED_2152 AMED_2153 SM00481 DNA polymerase alpha chain like domain AMED_2159 SM00729 Elongator protein 3, MiaB family, Radical SAM AMED_2165 SM00014 Acid phosphatase homologues AMED_2172 SM00860 SMI1 / KNR4 family AMED_2183 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_2183 SM00866 AMED_2183 AMED_2195 SM00342 helix_turn_helix, arabinose operon control protein AMED_2206 SM00465 GIY-YIG type nucleases (URI domain) AMED_2206 SM00479 AMED_2206 AMED_2215 SM00947 Carbonic anhydrase AMED_2216 SM00947 Carbonic anhydrase AMED_2218 SM00729 Elongator protein 3, MiaB family, Radical SAM AMED_2218 SM00876 Biotin and Thiamin Synthesis associated domain AMED_2221 SM00464 Found in ATP-dependent protease La (LON) AMED_2235 SM00020 Trypsin-like serine protease AMED_2238 SM00382 ATPases associated with a variety of cellular activities AMED_2248 SM00421 helix_turn_helix, Lux Regulon AMED_2248 SM00448 cheY-homologous receiver domain AMED_2249 SM00421 helix_turn_helix, Lux Regulon AMED_2249 SM00448 cheY-homologous receiver domain AMED_2261 SM00422 helix_turn_helix, mercury resistance AMED_2263 SM00861 Transketolase, pyrimidine binding domain AMED_2287 SM00530 Helix-turn-helix XRE-family like proteins AMED_2296 SM00422 helix_turn_helix, mercury resistance AMED_2298 SM00644 AMED_2298 AMED_2298 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AMED_2300 SM01230 AMED_2300 AMED_2305 SM00822 AMED_2305 AMED_2312 SM00822 AMED_2312 AMED_2313 SM00530 Helix-turn-helix XRE-family like proteins AMED_2316 SM00244 prohibitin homologues AMED_2318 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_2318 SM00740 AMED_2318 AMED_2336 SM00382 ATPases associated with a variety of cellular activities AMED_2336 SM00487 DEAD-like helicases superfamily AMED_2336 SM00490 helicase superfamily c-terminal domain AMED_2337 SM00420 helix_turn_helix, Deoxyribose operon repressor AMED_2337 SM01134 AMED_2337 AMED_2343 SM00382 ATPases associated with a variety of cellular activities AMED_2356 SM00530 Helix-turn-helix XRE-family like proteins AMED_2362 SM00062 Bacterial periplasmic substrate-binding proteins AMED_2363 SM00382 ATPases associated with a variety of cellular activities AMED_2364 SM00448 cheY-homologous receiver domain AMED_2364 SM00862 Transcriptional regulatory protein, C terminal AMED_2365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_2365 SM00387 Histidine kinase-like ATPases AMED_2365 SM00388 His Kinase A (phosphoacceptor) domain AMED_2370 SM00014 Acid phosphatase homologues AMED_2371 SM00915 Jacalin-like lectin domain AMED_2372 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_2373 SM00458 Ricin-type beta-trefoil AMED_2380 SM00729 Elongator protein 3, MiaB family, Radical SAM AMED_2403 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_2405 SM00116 Domain in cystathionine beta-synthase and other proteins. AMED_2407 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_2410 SM00421 helix_turn_helix, Lux Regulon AMED_2410 SM00448 cheY-homologous receiver domain AMED_2416 SM00529 Helix-turn-helix diphteria tox regulatory element AMED_2417 SM00450 Rhodanese Homology Domain AMED_2419 SM00881 CoA binding domain AMED_2424 SM00822 AMED_2424 AMED_2440 SM00354 helix_turn _helix lactose operon repressor AMED_2457 SM00563 Phosphate acyltransferases AMED_2462 SM00421 helix_turn_helix, Lux Regulon AMED_2466 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_2467 SM00636 AMED_2467 AMED_2471 SM00530 Helix-turn-helix XRE-family like proteins AMED_2474 SM00421 helix_turn_helix, Lux Regulon AMED_2491 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_2491 SM00387 Histidine kinase-like ATPases AMED_2492 SM00960 Roadblock/LC7 domain AMED_2497 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_2503 SM00487 DEAD-like helicases superfamily AMED_2503 SM00490 helicase superfamily c-terminal domain AMED_2515 SM00904 Riboflavin kinase AMED_2525 SM00903 Flavin reductase like domain AMED_2533 SM00342 helix_turn_helix, arabinose operon control protein AMED_2545 SM00344 helix_turn_helix ASNC type AMED_2553 SM00460 Transglutaminase/protease-like homologues AMED_2561 SM00020 Trypsin-like serine protease AMED_2563 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_2563 SM00866 AMED_2563 AMED_2581 SM00487 DEAD-like helicases superfamily AMED_2583 SM00382 ATPases associated with a variety of cellular activities AMED_2588 SM01230 AMED_2588 AMED_2592 SM00642 Alpha-amylase domain AMED_2593 SM00642 Alpha-amylase domain AMED_2594 SM00642 Alpha-amylase domain AMED_2595 SM00642 Alpha-amylase domain AMED_2596 SM00642 Alpha-amylase domain AMED_2597 SM00642 Alpha-amylase domain AMED_2599 SM00642 Alpha-amylase domain AMED_2618 SM00861 Transketolase, pyrimidine binding domain AMED_2625 SM00448 cheY-homologous receiver domain AMED_2625 SM00862 Transcriptional regulatory protein, C terminal AMED_2626 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_2626 SM00387 Histidine kinase-like ATPases AMED_2626 SM00388 His Kinase A (phosphoacceptor) domain AMED_2628 SM00481 DNA polymerase alpha chain like domain AMED_2635 SM00796 Allophanate hydrolase subunit 1 AMED_2635 SM00797 Allophanate hydrolase subunit 2 AMED_2635 SM00878 Biotin carboxylase C-terminal domain AMED_2640 SM00341 Helicase and RNase D C-terminal AMED_2640 SM00474 3'-5' exonuclease AMED_2641 SM00421 helix_turn_helix, Lux Regulon AMED_2641 SM00448 cheY-homologous receiver domain AMED_2653 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_2658 SM00316 Ribosomal protein S1-like RNA-binding domain AMED_2684 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_2695 SM01230 AMED_2695 AMED_2697 SM00862 Transcriptional regulatory protein, C terminal AMED_2697 SM01043 Bacterial transcriptional activator domain AMED_2699 SM00305 Hint (Hedgehog/Intein) domain C-terminal region AMED_2699 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AMED_2708 SM00382 ATPases associated with a variety of cellular activities AMED_2713 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMED_2714 SM00732 Likely ribonuclease with RNase H fold. AMED_2721 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_2726 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_2726 SM00866 AMED_2726 AMED_2741 SM00841 Elongation factor P, C-terminal AMED_2741 SM01185 AMED_2741 AMED_2744 SM00530 Helix-turn-helix XRE-family like proteins AMED_2749 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMED_2752 SM00851 MGS-like domain AMED_2752 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMED_2753 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMED_2755 SM00072 Guanylate kinase homologues. AMED_2756 SM01409 AMED_2756 AMED_2768 SM00098 Alkaline phosphatase homologues AMED_2769 SM00421 helix_turn_helix, Lux Regulon AMED_2769 SM00448 cheY-homologous receiver domain AMED_2777 SM00020 Trypsin-like serine protease AMED_2778 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMED_2778 SM00465 GIY-YIG type nucleases (URI domain) AMED_2787 SM00060 Fibronectin type 3 domain AMED_2787 SM00606 Cellulose Binding Domain Type IV AMED_2795 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_2798 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMED_2809 SM00861 Transketolase, pyrimidine binding domain AMED_2818 SM00829 Enoylreductase AMED_2827 SM00382 ATPases associated with a variety of cellular activities AMED_2832 SM00382 ATPases associated with a variety of cellular activities AMED_2842 SM00421 helix_turn_helix, Lux Regulon AMED_2842 SM00448 cheY-homologous receiver domain AMED_2854 SM00052 Putative diguanylate phosphodiesterase AMED_2854 SM00267 diguanylate cyclase AMED_2855 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_2858 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMED_2861 SM00382 ATPases associated with a variety of cellular activities AMED_2865 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_2866 SM00382 ATPases associated with a variety of cellular activities AMED_2874 SM00052 Putative diguanylate phosphodiesterase AMED_2874 SM00091 PAS domain AMED_2874 SM00267 diguanylate cyclase AMED_2888 SM00878 Biotin carboxylase C-terminal domain AMED_2896 SM00267 diguanylate cyclase AMED_2907 SM00458 Ricin-type beta-trefoil AMED_2912 SM00422 helix_turn_helix, mercury resistance AMED_2915 SM00320 WD40 repeats AMED_2919 SM00344 helix_turn_helix ASNC type AMED_2928 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_2931 SM00421 helix_turn_helix, Lux Regulon AMED_2931 SM00448 cheY-homologous receiver domain AMED_2947 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_2955 SM00864 Tubulin/FtsZ family, GTPase domain AMED_2955 SM00865 Tubulin/FtsZ family, C-terminal domain AMED_2962 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_2966 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_2971 SM00363 S4 RNA-binding domain AMED_2980 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_2983 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_2992 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_3000 SM00382 ATPases associated with a variety of cellular activities AMED_3004 SM00341 Helicase and RNase D C-terminal AMED_3004 SM00487 DEAD-like helicases superfamily AMED_3004 SM00490 helicase superfamily c-terminal domain AMED_3004 SM00956 AMED_3004 AMED_3006 SM00822 AMED_3006 AMED_3010 SM00422 helix_turn_helix, mercury resistance AMED_3013 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_3013 SM00387 Histidine kinase-like ATPases AMED_3013 SM00388 His Kinase A (phosphoacceptor) domain AMED_3014 SM00448 cheY-homologous receiver domain AMED_3014 SM00862 Transcriptional regulatory protein, C terminal AMED_3015 SM00014 Acid phosphatase homologues AMED_3019 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3019 SM00895 AMED_3019 AMED_3031 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_3032 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_3033 SM00829 Enoylreductase AMED_3039 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_3040 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMED_3046 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3046 SM00866 AMED_3046 AMED_3049 SM00331 Sigma factor PP2C-like phosphatases AMED_3050 SM00331 Sigma factor PP2C-like phosphatases AMED_3051 SM00387 Histidine kinase-like ATPases AMED_3054 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_3055 SM00331 Sigma factor PP2C-like phosphatases AMED_3058 SM00822 AMED_3058 AMED_3060 SM00642 Alpha-amylase domain AMED_3070 SM00354 helix_turn _helix lactose operon repressor AMED_3078 SM00342 helix_turn_helix, arabinose operon control protein AMED_3083 SM01001 AIR carboxylase AMED_3087 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_3088 SM00822 AMED_3088 AMED_3090 SM00382 ATPases associated with a variety of cellular activities AMED_3093 SM00812 Alpha-L-fucosidase AMED_3094 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3094 SM00895 AMED_3094 AMED_3097 SM00354 helix_turn _helix lactose operon repressor AMED_3102 SM00823 Phosphopantetheine attachment site AMED_3102 SM01294 AMED_3102 AMED_3103 SM00923 MbtH-like protein AMED_3105 SM00823 Phosphopantetheine attachment site AMED_3105 SM01294 AMED_3105 AMED_3112 SM00829 Enoylreductase AMED_3113 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMED_3119 SM00422 helix_turn_helix, mercury resistance AMED_3125 SM00829 Enoylreductase AMED_3143 SM00822 AMED_3143 AMED_3144 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_3145 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3145 SM00895 AMED_3145 AMED_3149 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_3150 SM00862 Transcriptional regulatory protein, C terminal AMED_3150 SM01043 Bacterial transcriptional activator domain AMED_3152 SM00387 Histidine kinase-like ATPases AMED_3153 SM00421 helix_turn_helix, Lux Regulon AMED_3153 SM00448 cheY-homologous receiver domain AMED_3158 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_3158 SM00387 Histidine kinase-like ATPases AMED_3158 SM00388 His Kinase A (phosphoacceptor) domain AMED_3159 SM00448 cheY-homologous receiver domain AMED_3159 SM00862 Transcriptional regulatory protein, C terminal AMED_3162 SM00382 ATPases associated with a variety of cellular activities AMED_3168 SM00382 ATPases associated with a variety of cellular activities AMED_3171 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMED_3171 SM00292 breast cancer carboxy-terminal domain AMED_3171 SM00532 Ligase N family AMED_3175 SM00960 Roadblock/LC7 domain AMED_3189 SM00642 Alpha-amylase domain AMED_3196 SM00420 helix_turn_helix, Deoxyribose operon repressor AMED_3198 SM00354 helix_turn _helix lactose operon repressor AMED_3199 SM00637 AMED_3199 AMED_3200 SM00637 AMED_3200 AMED_3211 SM00530 Helix-turn-helix XRE-family like proteins AMED_3222 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_3227 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_3231 SM00530 Helix-turn-helix XRE-family like proteins AMED_3235 SM01130 AMED_3235 AMED_3238 SM00100 Cyclic nucleotide-monophosphate binding domain AMED_3239 SM00100 Cyclic nucleotide-monophosphate binding domain AMED_3271 SM00829 Enoylreductase AMED_3281 SM00014 Acid phosphatase homologues AMED_3285 SM00637 AMED_3285 AMED_3286 SM00606 Cellulose Binding Domain Type IV AMED_3287 SM00633 Glycosyl hydrolase family 10 AMED_3287 SM00637 AMED_3287 AMED_3288 SM00637 AMED_3288 AMED_3290 SM00458 Ricin-type beta-trefoil AMED_3291 SM00812 Alpha-L-fucosidase AMED_3292 SM00458 Ricin-type beta-trefoil AMED_3293 SM00458 Ricin-type beta-trefoil AMED_3293 SM00710 Parallel beta-helix repeats AMED_3294 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3294 SM00895 AMED_3294 AMED_3295 SM00458 Ricin-type beta-trefoil AMED_3296 SM00354 helix_turn _helix lactose operon repressor AMED_3297 SM00458 Ricin-type beta-trefoil AMED_3298 SM00458 Ricin-type beta-trefoil AMED_3304 SM00822 AMED_3304 AMED_3306 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_3308 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_3308 SM00387 Histidine kinase-like ATPases AMED_3309 SM00960 Roadblock/LC7 domain AMED_3313 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3313 SM00866 AMED_3313 AMED_3318 SM00495 Chitin-binding domain type 3 AMED_3321 SM00226 Low molecular weight phosphatase family AMED_3321 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_3323 SM00421 helix_turn_helix, Lux Regulon AMED_3326 SM00267 diguanylate cyclase AMED_3327 SM00354 helix_turn _helix lactose operon repressor AMED_3335 SM00020 Trypsin-like serine protease AMED_3339 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_3353 SM00954 Region found in RelA / SpoT proteins AMED_3357 SM00631 AMED_3357 AMED_3359 SM00271 DnaJ molecular chaperone homology domain AMED_3362 SM00062 Bacterial periplasmic substrate-binding proteins AMED_3368 SM00822 AMED_3368 AMED_3368 SM00823 Phosphopantetheine attachment site AMED_3368 SM00825 Beta-ketoacyl synthase AMED_3368 SM00826 AMED_3368 AMED_3368 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_3375 SM00822 AMED_3375 AMED_3376 SM00822 AMED_3376 AMED_3378 SM00882 Coenzyme A transferase AMED_3379 SM00882 Coenzyme A transferase AMED_3392 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3392 SM00895 AMED_3392 AMED_3393 SM00477 DNA/RNA non-specific endonuclease AMED_3393 SM00892 DNA/RNA non-specific endonuclease AMED_3394 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_3398 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AMED_3398 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_3405 SM00458 Ricin-type beta-trefoil AMED_3406 SM00354 helix_turn _helix lactose operon repressor AMED_3411 SM00458 Ricin-type beta-trefoil AMED_3423 SM00354 helix_turn _helix lactose operon repressor AMED_3434 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_3438 SM00849 Metallo-beta-lactamase superfamily AMED_3439 SM00530 Helix-turn-helix XRE-family like proteins AMED_3449 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AMED_3459 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_3464 SM00382 ATPases associated with a variety of cellular activities AMED_3465 SM00382 ATPases associated with a variety of cellular activities AMED_3471 SM00822 AMED_3471 AMED_3476 SM00530 Helix-turn-helix XRE-family like proteins AMED_3477 SM00829 Enoylreductase AMED_3478 SM00606 Cellulose Binding Domain Type IV AMED_3483 SM01007 Class II Aldolase and Adducin N-terminal domain AMED_3489 SM00062 Bacterial periplasmic substrate-binding proteins AMED_3490 SM00382 ATPases associated with a variety of cellular activities AMED_3490 SM00421 helix_turn_helix, Lux Regulon AMED_3496 SM00822 AMED_3496 AMED_3497 SM00823 Phosphopantetheine attachment site AMED_3498 SM00825 Beta-ketoacyl synthase AMED_3500 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3500 SM00895 AMED_3500 AMED_3504 SM00829 Enoylreductase AMED_3507 SM00421 helix_turn_helix, Lux Regulon AMED_3525 SM00487 DEAD-like helicases superfamily AMED_3525 SM00490 helicase superfamily c-terminal domain AMED_3527 SM00382 ATPases associated with a variety of cellular activities AMED_3540 SM00448 cheY-homologous receiver domain AMED_3540 SM00862 Transcriptional regulatory protein, C terminal AMED_3541 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_3541 SM00387 Histidine kinase-like ATPases AMED_3541 SM00388 His Kinase A (phosphoacceptor) domain AMED_3544 SM00382 ATPases associated with a variety of cellular activities AMED_3546 SM00829 Enoylreductase AMED_3551 SM00387 Histidine kinase-like ATPases AMED_3552 SM00421 helix_turn_helix, Lux Regulon AMED_3552 SM00448 cheY-homologous receiver domain AMED_3557 SM00448 cheY-homologous receiver domain AMED_3559 SM00530 Helix-turn-helix XRE-family like proteins AMED_3563 SM00342 helix_turn_helix, arabinose operon control protein AMED_3567 SM00530 Helix-turn-helix XRE-family like proteins AMED_3578 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_3579 SM00458 Ricin-type beta-trefoil AMED_3581 SM00448 cheY-homologous receiver domain AMED_3581 SM00862 Transcriptional regulatory protein, C terminal AMED_3582 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_3582 SM00387 Histidine kinase-like ATPases AMED_3582 SM00388 His Kinase A (phosphoacceptor) domain AMED_3591 SM00138 Methyltransferase, chemotaxis proteins AMED_3597 SM00829 Enoylreductase AMED_3599 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMED_3599 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMED_3600 SM00947 Carbonic anhydrase AMED_3610 SM00822 AMED_3610 AMED_3611 SM00320 WD40 repeats AMED_3614 SM00422 helix_turn_helix, mercury resistance AMED_3619 SM00641 Glycosyl hydrolases family 25 AMED_3622 SM00028 Tetratricopeptide repeats AMED_3622 SM00862 Transcriptional regulatory protein, C terminal AMED_3622 SM01043 Bacterial transcriptional activator domain AMED_3623 SM00421 helix_turn_helix, Lux Regulon AMED_3633 SM00382 ATPases associated with a variety of cellular activities AMED_3641 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_3642 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMED_3645 SM00776 AMED_3645 AMED_3666 SM00829 Enoylreductase AMED_3680 SM00458 Ricin-type beta-trefoil AMED_3681 SM00823 Phosphopantetheine attachment site AMED_3681 SM00824 Thioesterase AMED_3681 SM00825 Beta-ketoacyl synthase AMED_3681 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_3683 SM00823 Phosphopantetheine attachment site AMED_3688 SM00900 AMED_3688 AMED_3690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_3690 SM00387 Histidine kinase-like ATPases AMED_3690 SM00388 His Kinase A (phosphoacceptor) domain AMED_3691 SM00448 cheY-homologous receiver domain AMED_3691 SM00862 Transcriptional regulatory protein, C terminal AMED_3693 SM00421 helix_turn_helix, Lux Regulon AMED_3693 SM00448 cheY-homologous receiver domain AMED_3706 SM00344 helix_turn_helix ASNC type AMED_3708 SM00829 Enoylreductase AMED_3711 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_3713 SM00060 Fibronectin type 3 domain AMED_3713 SM00458 Ricin-type beta-trefoil AMED_3719 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_3724 SM00829 Enoylreductase AMED_3725 SM00530 Helix-turn-helix XRE-family like proteins AMED_3728 SM00331 Sigma factor PP2C-like phosphatases AMED_3728 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMED_3734 SM00641 Glycosyl hydrolases family 25 AMED_3743 SM00382 ATPases associated with a variety of cellular activities AMED_3744 SM00382 ATPases associated with a variety of cellular activities AMED_3747 SM00458 Ricin-type beta-trefoil AMED_3748 SM00458 Ricin-type beta-trefoil AMED_3752 SM00342 helix_turn_helix, arabinose operon control protein AMED_3762 SM00205 Thaumatin family AMED_3766 SM00448 cheY-homologous receiver domain AMED_3766 SM00862 Transcriptional regulatory protein, C terminal AMED_3767 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_3767 SM00387 Histidine kinase-like ATPases AMED_3767 SM00388 His Kinase A (phosphoacceptor) domain AMED_3774 SM00421 helix_turn_helix, Lux Regulon AMED_3777 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_3780 SM00530 Helix-turn-helix XRE-family like proteins AMED_3800 SM00560 LamG-like jellyroll fold domain AMED_3806 SM00862 Transcriptional regulatory protein, C terminal AMED_3806 SM01043 Bacterial transcriptional activator domain AMED_3810 SM00829 Enoylreductase AMED_3814 SM00829 Enoylreductase AMED_3818 SM00822 AMED_3818 AMED_3824 SM00382 ATPases associated with a variety of cellular activities AMED_3825 SM00382 ATPases associated with a variety of cellular activities AMED_3834 SM00507 HNH nucleases AMED_3838 SM00849 Metallo-beta-lactamase superfamily AMED_3841 SM00881 CoA binding domain AMED_3859 SM00822 AMED_3859 AMED_3861 SM00822 AMED_3861 AMED_3870 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3870 SM00895 AMED_3870 AMED_3872 SM00342 helix_turn_helix, arabinose operon control protein AMED_3878 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3878 SM00895 AMED_3878 AMED_3879 SM00822 AMED_3879 AMED_3889 SM00028 Tetratricopeptide repeats AMED_3903 SM00421 helix_turn_helix, Lux Regulon AMED_3909 SM00421 helix_turn_helix, Lux Regulon AMED_3912 SM00060 Fibronectin type 3 domain AMED_3918 SM00420 helix_turn_helix, Deoxyribose operon repressor AMED_3918 SM01134 AMED_3918 AMED_3924 SM00458 Ricin-type beta-trefoil AMED_3926 SM00822 AMED_3926 AMED_3926 SM00823 Phosphopantetheine attachment site AMED_3926 SM00825 Beta-ketoacyl synthase AMED_3926 SM00826 AMED_3926 AMED_3926 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_3926 SM01294 AMED_3926 AMED_3929 SM00829 Enoylreductase AMED_3931 SM00060 Fibronectin type 3 domain AMED_3931 SM01067 Cellulose binding domain AMED_3932 SM00458 Ricin-type beta-trefoil AMED_3933 SM00458 Ricin-type beta-trefoil AMED_3938 SM00862 Transcriptional regulatory protein, C terminal AMED_3938 SM01043 Bacterial transcriptional activator domain AMED_3940 SM00382 ATPases associated with a variety of cellular activities AMED_3945 SM00422 helix_turn_helix, mercury resistance AMED_3951 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_3955 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_3955 SM00895 AMED_3955 AMED_3962 SM00822 AMED_3962 AMED_3962 SM00823 Phosphopantetheine attachment site AMED_3962 SM00825 Beta-ketoacyl synthase AMED_3963 SM00823 Phosphopantetheine attachment site AMED_3963 SM00824 Thioesterase AMED_3970 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_3975 SM00382 ATPases associated with a variety of cellular activities AMED_3980 SM00829 Enoylreductase AMED_3984 SM00458 Ricin-type beta-trefoil AMED_3985 SM00458 Ricin-type beta-trefoil AMED_3992 SM00637 AMED_3992 AMED_3993 SM00458 Ricin-type beta-trefoil AMED_3994 SM00458 Ricin-type beta-trefoil AMED_3995 SM00458 Ricin-type beta-trefoil AMED_3995 SM00633 Glycosyl hydrolase family 10 AMED_3996 SM00829 Enoylreductase AMED_3999 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_4002 SM01217 AMED_4002 AMED_4005 SM00633 Glycosyl hydrolase family 10 AMED_4005 SM00637 AMED_4005 AMED_4008 SM00825 Beta-ketoacyl synthase AMED_4014 SM00862 Transcriptional regulatory protein, C terminal AMED_4014 SM01043 Bacterial transcriptional activator domain AMED_4020 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_4021 SM00028 Tetratricopeptide repeats AMED_4021 SM00530 Helix-turn-helix XRE-family like proteins AMED_4021 SM00862 Transcriptional regulatory protein, C terminal AMED_4021 SM01043 Bacterial transcriptional activator domain AMED_4025 SM00421 helix_turn_helix, Lux Regulon AMED_4025 SM00448 cheY-homologous receiver domain AMED_4027 SM00382 ATPases associated with a variety of cellular activities AMED_4030 SM00823 Phosphopantetheine attachment site AMED_4034 SM00823 Phosphopantetheine attachment site AMED_4034 SM00824 Thioesterase AMED_4036 SM00923 MbtH-like protein AMED_4037 SM00382 ATPases associated with a variety of cellular activities AMED_4042 SM00822 AMED_4042 AMED_4044 SM00825 Beta-ketoacyl synthase AMED_4046 SM01043 Bacterial transcriptional activator domain AMED_4052 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_4052 SM00387 Histidine kinase-like ATPases AMED_4052 SM00388 His Kinase A (phosphoacceptor) domain AMED_4053 SM00448 cheY-homologous receiver domain AMED_4053 SM00862 Transcriptional regulatory protein, C terminal AMED_4065 SM00823 Phosphopantetheine attachment site AMED_4065 SM01294 AMED_4065 AMED_4066 SM00823 Phosphopantetheine attachment site AMED_4066 SM00825 Beta-ketoacyl synthase AMED_4068 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AMED_4082 SM00422 helix_turn_helix, mercury resistance AMED_4083 SM00422 helix_turn_helix, mercury resistance AMED_4088 SM00354 helix_turn _helix lactose operon repressor AMED_4092 SM00637 AMED_4092 AMED_4096 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_4097 SM00637 AMED_4097 AMED_4099 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_4099 SM00091 PAS domain AMED_4099 SM00331 Sigma factor PP2C-like phosphatases AMED_4111 SM00155 Phospholipase D. Active site motifs. AMED_4116 SM00346 helix_turn_helix isocitrate lyase regulation AMED_4119 SM00382 ATPases associated with a variety of cellular activities AMED_4121 SM00822 AMED_4121 AMED_4133 SM00091 PAS domain AMED_4133 SM00138 Methyltransferase, chemotaxis proteins AMED_4153 SM00833 Cobalamin synthesis protein cobW C-terminal domain AMED_4164 SM00631 AMED_4164 AMED_4166 SM00878 Biotin carboxylase C-terminal domain AMED_4170 SM00481 DNA polymerase alpha chain like domain AMED_4173 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_4191 SM00487 DEAD-like helicases superfamily AMED_4191 SM00490 helicase superfamily c-terminal domain AMED_4192 SM01012 AMED_4192 AMED_4195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_4195 SM01012 AMED_4195 AMED_4196 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_4196 SM01012 AMED_4196 AMED_4213 SM00530 Helix-turn-helix XRE-family like proteins AMED_4215 SM00530 Helix-turn-helix XRE-family like proteins AMED_4217 SM00710 Parallel beta-helix repeats AMED_4219 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMED_4236 SM00344 helix_turn_helix ASNC type AMED_4240 SM00421 helix_turn_helix, Lux Regulon AMED_4240 SM00448 cheY-homologous receiver domain AMED_4244 SM00637 AMED_4244 AMED_4245 SM00507 HNH nucleases AMED_4246 SM00387 Histidine kinase-like ATPases AMED_4257 SM00422 helix_turn_helix, mercury resistance AMED_4269 SM00984 UDP binding domain AMED_4271 SM00822 AMED_4271 AMED_4284 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_4297 SM00704 CDGSH-type zinc finger. Function unknown. AMED_4298 SM01236 AMED_4298 AMED_4308 SM00382 ATPases associated with a variety of cellular activities AMED_4314 SM00028 Tetratricopeptide repeats AMED_4314 SM00862 Transcriptional regulatory protein, C terminal AMED_4314 SM01043 Bacterial transcriptional activator domain AMED_4320 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_4330 SM00829 Enoylreductase AMED_4333 SM00382 ATPases associated with a variety of cellular activities AMED_4333 SM00530 Helix-turn-helix XRE-family like proteins AMED_4337 SM00822 AMED_4337 AMED_4339 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_4340 SM00867 YceI-like domain AMED_4347 SM00354 helix_turn _helix lactose operon repressor AMED_4348 SM00606 Cellulose Binding Domain Type IV AMED_4348 SM01217 AMED_4348 AMED_4352 SM00052 Putative diguanylate phosphodiesterase AMED_4352 SM00091 PAS domain AMED_4352 SM00267 diguanylate cyclase AMED_4356 SM00240 Forkhead associated domain AMED_4366 SM00028 Tetratricopeptide repeats AMED_4378 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_4379 SM00421 helix_turn_helix, Lux Regulon AMED_4379 SM00448 cheY-homologous receiver domain AMED_4387 SM00354 helix_turn _helix lactose operon repressor AMED_4388 SM00776 AMED_4388 AMED_4388 SM01029 Beta-galactosidase, domain 2 AMED_4392 SM00637 AMED_4392 AMED_4392 SM00710 Parallel beta-helix repeats AMED_4396 SM00354 helix_turn _helix lactose operon repressor AMED_4398 SM00382 ATPases associated with a variety of cellular activities AMED_4401 SM00560 LamG-like jellyroll fold domain AMED_4401 SM00813 Alpha-L-arabinofuranosidase C-terminus AMED_4403 SM01007 Class II Aldolase and Adducin N-terminal domain AMED_4406 SM00382 ATPases associated with a variety of cellular activities AMED_4412 SM00346 helix_turn_helix isocitrate lyase regulation AMED_4418 SM00829 Enoylreductase AMED_4420 SM00028 Tetratricopeptide repeats AMED_4420 SM00382 ATPases associated with a variety of cellular activities AMED_4420 SM00862 Transcriptional regulatory protein, C terminal AMED_4420 SM01043 Bacterial transcriptional activator domain AMED_4424 SM00344 helix_turn_helix ASNC type AMED_4427 SM00354 helix_turn _helix lactose operon repressor AMED_4436 SM00656 AMED_4436 AMED_4440 SM01029 Beta-galactosidase, domain 2 AMED_4442 SM00862 Transcriptional regulatory protein, C terminal AMED_4442 SM01043 Bacterial transcriptional activator domain AMED_4452 SM00382 ATPases associated with a variety of cellular activities AMED_4461 SM00829 Enoylreductase AMED_4467 SM00422 helix_turn_helix, mercury resistance AMED_4472 SM00838 Elongation factor G C-terminus AMED_4472 SM00889 Elongation factor G, domain IV AMED_4480 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_4482 SM00823 Phosphopantetheine attachment site AMED_4482 SM00824 Thioesterase AMED_4482 SM00825 Beta-ketoacyl synthase AMED_4482 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_4486 SM00822 AMED_4486 AMED_4493 SM00822 AMED_4493 AMED_4497 SM00028 Tetratricopeptide repeats AMED_4502 SM00420 helix_turn_helix, Deoxyribose operon repressor AMED_4502 SM01134 AMED_4502 AMED_4507 SM01217 AMED_4507 AMED_4508 SM00354 helix_turn _helix lactose operon repressor AMED_4513 SM00354 helix_turn _helix lactose operon repressor AMED_4514 SM00633 Glycosyl hydrolase family 10 AMED_4517 SM00357 Cold shock protein domain AMED_4518 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. AMED_4526 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_4526 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_4526 SM00387 Histidine kinase-like ATPases AMED_4526 SM00388 His Kinase A (phosphoacceptor) domain AMED_4526 SM00448 cheY-homologous receiver domain AMED_4527 SM00331 Sigma factor PP2C-like phosphatases AMED_4527 SM01012 AMED_4527 AMED_4535 SM00736 Dystroglycan-type cadherin-like domains. AMED_4538 SM00354 helix_turn _helix lactose operon repressor AMED_4539 SM00382 ATPases associated with a variety of cellular activities AMED_4545 SM01007 Class II Aldolase and Adducin N-terminal domain AMED_4548 SM00421 helix_turn_helix, Lux Regulon AMED_4548 SM00448 cheY-homologous receiver domain AMED_4551 SM00354 helix_turn _helix lactose operon repressor AMED_4557 SM00342 helix_turn_helix, arabinose operon control protein AMED_4569 SM00881 CoA binding domain AMED_4573 SM00881 CoA binding domain AMED_4575 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_4575 SM00895 AMED_4575 AMED_4578 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMED_4579 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMED_4583 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMED_4585 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_4597 SM01038 Beta galactosidase small chain AMED_4598 SM00354 helix_turn _helix lactose operon repressor AMED_4604 SM00822 AMED_4604 AMED_4604 SM00825 Beta-ketoacyl synthase AMED_4604 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_4605 SM00825 Beta-ketoacyl synthase AMED_4605 SM00826 AMED_4605 AMED_4605 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_4609 SM00822 AMED_4609 AMED_4615 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AMED_4615 SM00710 Parallel beta-helix repeats AMED_4624 SM00354 helix_turn _helix lactose operon repressor AMED_4629 SM00422 helix_turn_helix, mercury resistance AMED_4637 SM00855 Phosphoglycerate mutase family AMED_4641 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_4650 SM00342 helix_turn_helix, arabinose operon control protein AMED_4651 SM00829 Enoylreductase AMED_4658 SM00382 ATPases associated with a variety of cellular activities AMED_4668 SM00244 prohibitin homologues AMED_4669 SM00244 prohibitin homologues AMED_4672 SM00198 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. AMED_4678 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_4691 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_4696 SM00342 helix_turn_helix, arabinose operon control protein AMED_4706 SM00382 ATPases associated with a variety of cellular activities AMED_4708 SM00487 DEAD-like helicases superfamily AMED_4708 SM00490 helicase superfamily c-terminal domain AMED_4717 SM00530 Helix-turn-helix XRE-family like proteins AMED_4720 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_4730 SM00420 helix_turn_helix, Deoxyribose operon repressor AMED_4730 SM01134 AMED_4730 AMED_4738 SM00342 helix_turn_helix, arabinose operon control protein AMED_4743 SM00028 Tetratricopeptide repeats AMED_4743 SM00862 Transcriptional regulatory protein, C terminal AMED_4743 SM01043 Bacterial transcriptional activator domain AMED_4745 SM01260 AMED_4745 AMED_4747 SM01043 Bacterial transcriptional activator domain AMED_4758 SM00530 Helix-turn-helix XRE-family like proteins AMED_4760 SM01209 AMED_4760 AMED_4766 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_4767 SM00823 Phosphopantetheine attachment site AMED_4768 SM00923 MbtH-like protein AMED_4769 SM00823 Phosphopantetheine attachment site AMED_4770 SM00823 Phosphopantetheine attachment site AMED_4776 SM00862 Transcriptional regulatory protein, C terminal AMED_4776 SM01043 Bacterial transcriptional activator domain AMED_4779 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_4787 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_4788 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_4788 SM00895 AMED_4788 AMED_4793 SM00923 MbtH-like protein AMED_4794 SM00823 Phosphopantetheine attachment site AMED_4800 SM00823 Phosphopantetheine attachment site AMED_4800 SM00824 Thioesterase AMED_4804 SM00823 Phosphopantetheine attachment site AMED_4805 SM01043 Bacterial transcriptional activator domain AMED_4807 SM00028 Tetratricopeptide repeats AMED_4807 SM00382 ATPases associated with a variety of cellular activities AMED_4807 SM00862 Transcriptional regulatory protein, C terminal AMED_4807 SM01043 Bacterial transcriptional activator domain AMED_4809 SM00422 helix_turn_helix, mercury resistance AMED_4809 SM00567 E-Z type HEAT repeats AMED_4817 SM00458 Ricin-type beta-trefoil AMED_4821 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_4823 SM00849 Metallo-beta-lactamase superfamily AMED_4826 SM00421 helix_turn_helix, Lux Regulon AMED_4826 SM00448 cheY-homologous receiver domain AMED_4827 SM00421 helix_turn_helix, Lux Regulon AMED_4829 SM00327 von Willebrand factor (vWF) type A domain AMED_4845 SM00382 ATPases associated with a variety of cellular activities AMED_4848 SM00710 Parallel beta-helix repeats AMED_4851 SM00346 helix_turn_helix isocitrate lyase regulation AMED_4851 SM00419 helix_turn_helix, cAMP Regulatory protein AMED_4855 SM00829 Enoylreductase AMED_4860 SM00382 ATPases associated with a variety of cellular activities AMED_4861 SM00382 ATPases associated with a variety of cellular activities AMED_4864 SM00822 AMED_4864 AMED_4866 SM00450 Rhodanese Homology Domain AMED_4872 SM00344 helix_turn_helix ASNC type AMED_4874 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMED_4874 SM00475 5'-3' exonuclease AMED_4878 SM00487 DEAD-like helicases superfamily AMED_4878 SM00490 helicase superfamily c-terminal domain AMED_4878 SM01142 AMED_4878 AMED_4880 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMED_4887 SM00829 Enoylreductase AMED_4891 SM00014 Acid phosphatase homologues AMED_4891 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMED_4901 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_4905 SM00382 ATPases associated with a variety of cellular activities AMED_4917 SM00342 helix_turn_helix, arabinose operon control protein AMED_4917 SM00478 endonuclease III AMED_4917 SM01009 AlkA N-terminal domain AMED_4919 SM01018 B12 binding domain AMED_4927 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_4928 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_4929 SM00382 ATPases associated with a variety of cellular activities AMED_4931 SM00422 helix_turn_helix, mercury resistance AMED_4933 SM00327 von Willebrand factor (vWF) type A domain AMED_4941 SM00822 AMED_4941 AMED_4943 SM00448 cheY-homologous receiver domain AMED_4943 SM00862 Transcriptional regulatory protein, C terminal AMED_4944 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_4944 SM00387 Histidine kinase-like ATPases AMED_4944 SM00388 His Kinase A (phosphoacceptor) domain AMED_4949 SM00327 von Willebrand factor (vWF) type A domain AMED_4966 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMED_4973 SM01091 Transporter associated domain AMED_4978 SM00530 Helix-turn-helix XRE-family like proteins AMED_4984 SM00422 helix_turn_helix, mercury resistance AMED_4987 SM00422 helix_turn_helix, mercury resistance AMED_4989 SM00422 helix_turn_helix, mercury resistance AMED_4990 SM00240 Forkhead associated domain AMED_5001 SM00382 ATPases associated with a variety of cellular activities AMED_5008 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5017 SM00346 helix_turn_helix isocitrate lyase regulation AMED_5022 SM00062 Bacterial periplasmic substrate-binding proteins AMED_5023 SM00382 ATPases associated with a variety of cellular activities AMED_5025 SM00849 Metallo-beta-lactamase superfamily AMED_5026 SM00896 Ferredoxin-fold anticodon binding domain AMED_5030 SM00382 ATPases associated with a variety of cellular activities AMED_5031 SM00923 MbtH-like protein AMED_5034 SM00823 Phosphopantetheine attachment site AMED_5037 SM00382 ATPases associated with a variety of cellular activities AMED_5046 SM00382 ATPases associated with a variety of cellular activities AMED_5049 SM00060 Fibronectin type 3 domain AMED_5049 SM00636 AMED_5049 AMED_5049 SM00637 AMED_5049 AMED_5056 SM00028 Tetratricopeptide repeats AMED_5064 SM00633 Glycosyl hydrolase family 10 AMED_5067 SM00060 Fibronectin type 3 domain AMED_5067 SM00637 AMED_5067 AMED_5068 SM00060 Fibronectin type 3 domain AMED_5068 SM00637 AMED_5068 AMED_5071 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_5072 SM00354 helix_turn _helix lactose operon repressor AMED_5073 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_5076 SM00382 ATPases associated with a variety of cellular activities AMED_5077 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_5077 SM00387 Histidine kinase-like ATPases AMED_5077 SM00388 His Kinase A (phosphoacceptor) domain AMED_5078 SM00448 cheY-homologous receiver domain AMED_5078 SM00862 Transcriptional regulatory protein, C terminal AMED_5081 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5084 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5096 SM00382 ATPases associated with a variety of cellular activities AMED_5100 SM00944 Pro-kumamolisin, activation domain AMED_5101 SM00994 ClpX C4-type zinc finger AMED_5105 SM00641 Glycosyl hydrolases family 25 AMED_5106 SM00729 Elongator protein 3, MiaB family, Radical SAM AMED_5115 SM00530 Helix-turn-helix XRE-family like proteins AMED_5147 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5153 SM00458 Ricin-type beta-trefoil AMED_5156 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5161 SM00448 cheY-homologous receiver domain AMED_5162 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMED_5162 SM00091 PAS domain AMED_5162 SM00387 Histidine kinase-like ATPases AMED_5164 SM00421 helix_turn_helix, Lux Regulon AMED_5164 SM00448 cheY-homologous receiver domain AMED_5173 SM00421 helix_turn_helix, Lux Regulon AMED_5176 SM01018 B12 binding domain AMED_5179 SM00637 AMED_5179 AMED_5180 SM00829 Enoylreductase AMED_5185 SM00637 AMED_5185 AMED_5188 SM00637 AMED_5188 AMED_5189 SM00354 helix_turn _helix lactose operon repressor AMED_5191 SM00637 AMED_5191 AMED_5192 SM00637 AMED_5192 AMED_5193 SM00637 AMED_5193 AMED_5194 SM00354 helix_turn _helix lactose operon repressor AMED_5201 SM00116 Domain in cystathionine beta-synthase and other proteins. AMED_5202 SM00986 Uracil DNA glycosylase superfamily AMED_5202 SM00987 UreE urease accessory protein, C-terminal domain AMED_5205 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AMED_5208 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_5208 SM01012 AMED_5208 AMED_5214 SM00880 AMED_5214 AMED_5214 SM01118 AMED_5214 AMED_5216 SM01012 AMED_5216 AMED_5228 SM00812 Alpha-L-fucosidase AMED_5240 SM00507 HNH nucleases AMED_5244 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMED_5246 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_5250 SM00354 helix_turn _helix lactose operon repressor AMED_5251 SM01217 AMED_5251 AMED_5254 SM00849 Metallo-beta-lactamase superfamily AMED_5255 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5263 SM00996 S-adenosyl-L-homocysteine hydrolase AMED_5263 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMED_5266 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AMED_5270 SM00960 Roadblock/LC7 domain AMED_5271 SM00387 Histidine kinase-like ATPases AMED_5273 SM00382 ATPases associated with a variety of cellular activities AMED_5274 SM00382 ATPases associated with a variety of cellular activities AMED_5278 SM00028 Tetratricopeptide repeats AMED_5278 SM00862 Transcriptional regulatory protein, C terminal AMED_5278 SM01043 Bacterial transcriptional activator domain AMED_5280 SM00342 helix_turn_helix, arabinose operon control protein AMED_5283 SM00849 Metallo-beta-lactamase superfamily AMED_5289 SM00421 helix_turn_helix, Lux Regulon AMED_5292 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5294 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMED_5294 SM00954 Region found in RelA / SpoT proteins AMED_5298 SM01323 AMED_5298 AMED_5299 SM00382 ATPases associated with a variety of cellular activities AMED_5308 SM00530 Helix-turn-helix XRE-family like proteins AMED_5312 SM00823 Phosphopantetheine attachment site AMED_5313 SM00824 Thioesterase AMED_5315 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_5317 SM00838 Elongation factor G C-terminus AMED_5317 SM00889 Elongation factor G, domain IV AMED_5325 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5327 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMED_5332 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMED_5338 SM00822 AMED_5338 AMED_5341 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_5344 SM00344 helix_turn_helix ASNC type AMED_5345 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5360 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMED_5363 SM00710 Parallel beta-helix repeats AMED_5370 SM00420 helix_turn_helix, Deoxyribose operon repressor AMED_5384 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_5384 SM00895 AMED_5384 AMED_5396 SM00823 Phosphopantetheine attachment site AMED_5403 SM00421 helix_turn_helix, Lux Regulon AMED_5403 SM00448 cheY-homologous receiver domain AMED_5404 SM00387 Histidine kinase-like ATPases AMED_5406 SM00382 ATPases associated with a variety of cellular activities AMED_5409 SM00823 Phosphopantetheine attachment site AMED_5416 SM00382 ATPases associated with a variety of cellular activities AMED_5421 SM00862 Transcriptional regulatory protein, C terminal AMED_5421 SM01043 Bacterial transcriptional activator domain AMED_5430 SM00822 AMED_5430 AMED_5434 SM00825 Beta-ketoacyl synthase AMED_5435 SM00825 Beta-ketoacyl synthase AMED_5453 SM00028 Tetratricopeptide repeats AMED_5453 SM00530 Helix-turn-helix XRE-family like proteins AMED_5459 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_5466 SM00831 Cation transporter/ATPase, N-terminus AMED_5470 SM00881 CoA binding domain AMED_5471 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_5473 SM00421 helix_turn_helix, Lux Regulon AMED_5473 SM00448 cheY-homologous receiver domain AMED_5476 SM00382 ATPases associated with a variety of cellular activities AMED_5479 SM00116 Domain in cystathionine beta-synthase and other proteins. AMED_5482 SM00116 Domain in cystathionine beta-synthase and other proteins. AMED_5492 SM00421 helix_turn_helix, Lux Regulon AMED_5492 SM00448 cheY-homologous receiver domain AMED_5494 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_5494 SM01012 AMED_5494 AMED_5497 SM00448 cheY-homologous receiver domain AMED_5502 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5503 SM00849 Metallo-beta-lactamase superfamily AMED_5507 SM00387 Histidine kinase-like ATPases AMED_5508 SM00421 helix_turn_helix, Lux Regulon AMED_5508 SM00448 cheY-homologous receiver domain AMED_5510 SM00710 Parallel beta-helix repeats AMED_5511 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_5518 SM00855 Phosphoglycerate mutase family AMED_5522 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AMED_5523 SM00560 LamG-like jellyroll fold domain AMED_5530 SM00267 diguanylate cyclase AMED_5532 SM00458 Ricin-type beta-trefoil AMED_5541 SM00382 ATPases associated with a variety of cellular activities AMED_5542 SM00382 ATPases associated with a variety of cellular activities AMED_5556 SM00346 helix_turn_helix isocitrate lyase regulation AMED_5559 SM00028 Tetratricopeptide repeats AMED_5562 SM01012 AMED_5562 AMED_5567 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5571 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_5571 SM00387 Histidine kinase-like ATPases AMED_5573 SM00421 helix_turn_helix, Lux Regulon AMED_5573 SM00448 cheY-homologous receiver domain AMED_5574 SM00749 bacterial OsmY and nodulation domain AMED_5575 SM00244 prohibitin homologues AMED_5579 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_5579 SM01012 AMED_5579 AMED_5580 SM01012 AMED_5580 AMED_5599 SM00458 Ricin-type beta-trefoil AMED_5601 SM00448 cheY-homologous receiver domain AMED_5601 SM00862 Transcriptional regulatory protein, C terminal AMED_5602 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_5602 SM00387 Histidine kinase-like ATPases AMED_5602 SM00388 His Kinase A (phosphoacceptor) domain AMED_5609 SM00822 AMED_5609 AMED_5613 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_5616 SM00458 Ricin-type beta-trefoil AMED_5618 SM00822 AMED_5618 AMED_5624 SM00637 AMED_5624 AMED_5633 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5640 SM00421 helix_turn_helix, Lux Regulon AMED_5641 SM00421 helix_turn_helix, Lux Regulon AMED_5647 SM00822 AMED_5647 AMED_5651 SM00421 helix_turn_helix, Lux Regulon AMED_5654 SM00382 ATPases associated with a variety of cellular activities AMED_5666 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_5666 SM00387 Histidine kinase-like ATPases AMED_5666 SM00388 His Kinase A (phosphoacceptor) domain AMED_5667 SM00448 cheY-homologous receiver domain AMED_5667 SM00862 Transcriptional regulatory protein, C terminal AMED_5702 SM00346 helix_turn_helix isocitrate lyase regulation AMED_5707 SM00357 Cold shock protein domain AMED_5714 SM00560 LamG-like jellyroll fold domain AMED_5714 SM01038 Beta galactosidase small chain AMED_5726 SM00448 cheY-homologous receiver domain AMED_5726 SM00862 Transcriptional regulatory protein, C terminal AMED_5727 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_5727 SM00387 Histidine kinase-like ATPases AMED_5727 SM00388 His Kinase A (phosphoacceptor) domain AMED_5729 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_5731 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5757 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMED_5763 SM00530 Helix-turn-helix XRE-family like proteins AMED_5765 SM00530 Helix-turn-helix XRE-family like proteins AMED_5772 SM00354 helix_turn _helix lactose operon repressor AMED_5776 SM00421 helix_turn_helix, Lux Regulon AMED_5777 SM00354 helix_turn _helix lactose operon repressor AMED_5779 SM00849 Metallo-beta-lactamase superfamily AMED_5781 SM00342 helix_turn_helix, arabinose operon control protein AMED_5790 SM00028 Tetratricopeptide repeats AMED_5808 SM01101 AMED_5808 AMED_5824 SM00320 WD40 repeats AMED_5826 SM00857 Resolvase, N terminal domain AMED_5827 SM00637 AMED_5827 AMED_5834 SM00422 helix_turn_helix, mercury resistance AMED_5834 SM00871 Bacterial transcription activator, effector binding domain AMED_5835 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_5837 SM00368 Leucine rich repeat, ribonuclease inhibitor type AMED_5839 SM00420 helix_turn_helix, Deoxyribose operon repressor AMED_5839 SM01134 AMED_5839 AMED_5848 SM00327 von Willebrand factor (vWF) type A domain AMED_5849 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_5852 SM00382 ATPases associated with a variety of cellular activities AMED_5853 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_5856 SM00507 HNH nucleases AMED_5857 SM00344 helix_turn_helix ASNC type AMED_5859 SM00421 helix_turn_helix, Lux Regulon AMED_5859 SM00448 cheY-homologous receiver domain AMED_5862 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_5877 SM00382 ATPases associated with a variety of cellular activities AMED_5880 SM00633 Glycosyl hydrolase family 10 AMED_5880 SM00637 AMED_5880 AMED_5881 SM00530 Helix-turn-helix XRE-family like proteins AMED_5885 SM00855 Phosphoglycerate mutase family AMED_5886 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_5886 SM00331 Sigma factor PP2C-like phosphatases AMED_5889 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_5889 SM00331 Sigma factor PP2C-like phosphatases AMED_5891 SM00091 PAS domain AMED_5891 SM00331 Sigma factor PP2C-like phosphatases AMED_5891 SM00387 Histidine kinase-like ATPases AMED_5891 SM00388 His Kinase A (phosphoacceptor) domain AMED_5891 SM00448 cheY-homologous receiver domain AMED_5893 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_5893 SM01012 AMED_5893 AMED_5903 SM00028 Tetratricopeptide repeats AMED_5903 SM00862 Transcriptional regulatory protein, C terminal AMED_5903 SM01043 Bacterial transcriptional activator domain AMED_5904 SM00530 Helix-turn-helix XRE-family like proteins AMED_5923 SM00530 Helix-turn-helix XRE-family like proteins AMED_5929 SM00382 ATPases associated with a variety of cellular activities AMED_5934 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_5952 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_5965 SM00327 von Willebrand factor (vWF) type A domain AMED_5973 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_5974 SM01130 AMED_5974 AMED_5976 SM00346 helix_turn_helix isocitrate lyase regulation AMED_5982 SM00421 helix_turn_helix, Lux Regulon AMED_5982 SM00448 cheY-homologous receiver domain AMED_5989 SM00342 helix_turn_helix, arabinose operon control protein AMED_5996 SM00823 Phosphopantetheine attachment site AMED_5997 SM00382 ATPases associated with a variety of cellular activities AMED_5998 SM00563 Phosphate acyltransferases AMED_6004 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6006 SM00363 S4 RNA-binding domain AMED_6016 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_6016 SM00895 AMED_6016 AMED_6024 SM00829 Enoylreductase AMED_6025 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_6028 SM00363 S4 RNA-binding domain AMED_6044 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMED_6050 SM00873 B3/4 domain AMED_6050 SM00874 tRNA synthetase B5 domain AMED_6050 SM00896 Ferredoxin-fold anticodon binding domain AMED_6058 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_6058 SM00895 AMED_6058 AMED_6061 SM00346 helix_turn_helix isocitrate lyase regulation AMED_6063 SM01119 AMED_6063 AMED_6072 SM00448 cheY-homologous receiver domain AMED_6073 SM00091 PAS domain AMED_6073 SM00387 Histidine kinase-like ATPases AMED_6084 SM00849 Metallo-beta-lactamase superfamily AMED_6090 SM00100 Cyclic nucleotide-monophosphate binding domain AMED_6090 SM00419 helix_turn_helix, cAMP Regulatory protein AMED_6098 SM00855 Phosphoglycerate mutase family AMED_6101 SM00342 helix_turn_helix, arabinose operon control protein AMED_6102 SM00354 helix_turn _helix lactose operon repressor AMED_6104 SM00953 AMED_6104 AMED_6109 SM00382 ATPases associated with a variety of cellular activities AMED_6109 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6117 SM00487 DEAD-like helicases superfamily AMED_6117 SM00490 helicase superfamily c-terminal domain AMED_6127 SM00316 Ribosomal protein S1-like RNA-binding domain AMED_6131 SM00382 ATPases associated with a variety of cellular activities AMED_6134 SM00342 helix_turn_helix, arabinose operon control protein AMED_6135 SM00829 Enoylreductase AMED_6137 SM00054 EF-hand, calcium binding motif AMED_6138 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMED_6138 SM00474 3'-5' exonuclease AMED_6138 SM00475 5'-3' exonuclease AMED_6138 SM00482 DNA polymerase A domain AMED_6145 SM00382 ATPases associated with a variety of cellular activities AMED_6146 SM00382 ATPases associated with a variety of cellular activities AMED_6148 SM00448 cheY-homologous receiver domain AMED_6148 SM01012 AMED_6148 AMED_6173 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_6192 SM00421 helix_turn_helix, Lux Regulon AMED_6192 SM00448 cheY-homologous receiver domain AMED_6196 SM00421 helix_turn_helix, Lux Regulon AMED_6196 SM00448 cheY-homologous receiver domain AMED_6209 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_6211 SM00346 helix_turn_helix isocitrate lyase regulation AMED_6213 SM00530 Helix-turn-helix XRE-family like proteins AMED_6216 SM00342 helix_turn_helix, arabinose operon control protein AMED_6220 SM00530 Helix-turn-helix XRE-family like proteins AMED_6222 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_6222 SM01012 AMED_6222 AMED_6230 SM00823 Phosphopantetheine attachment site AMED_6231 SM00823 Phosphopantetheine attachment site AMED_6234 SM00823 Phosphopantetheine attachment site AMED_6236 SM00923 MbtH-like protein AMED_6237 SM00823 Phosphopantetheine attachment site AMED_6243 SM00823 Phosphopantetheine attachment site AMED_6244 SM00421 helix_turn_helix, Lux Regulon AMED_6269 SM00460 Transglutaminase/protease-like homologues AMED_6274 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_6274 SM01232 AMED_6274 AMED_6281 SM00530 Helix-turn-helix XRE-family like proteins AMED_6284 SM00729 Elongator protein 3, MiaB family, Radical SAM AMED_6291 SM00843 AMED_6291 AMED_6292 SM00563 Phosphate acyltransferases AMED_6298 SM00327 von Willebrand factor (vWF) type A domain AMED_6299 SM00849 Metallo-beta-lactamase superfamily AMED_6300 SM01130 AMED_6300 AMED_6301 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_6311 SM00530 Helix-turn-helix XRE-family like proteins AMED_6318 SM00316 Ribosomal protein S1-like RNA-binding domain AMED_6318 SM00322 K homology RNA-binding domain AMED_6319 SM01387 AMED_6319 AMED_6322 SM00904 Riboflavin kinase AMED_6340 SM00316 Ribosomal protein S1-like RNA-binding domain AMED_6350 SM00421 helix_turn_helix, Lux Regulon AMED_6350 SM00448 cheY-homologous receiver domain AMED_6355 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6358 SM00448 cheY-homologous receiver domain AMED_6358 SM00862 Transcriptional regulatory protein, C terminal AMED_6359 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_6359 SM00387 Histidine kinase-like ATPases AMED_6359 SM00388 His Kinase A (phosphoacceptor) domain AMED_6361 SM00028 Tetratricopeptide repeats AMED_6363 SM00028 Tetratricopeptide repeats AMED_6363 SM00862 Transcriptional regulatory protein, C terminal AMED_6363 SM01043 Bacterial transcriptional activator domain AMED_6372 SM00822 AMED_6372 AMED_6386 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_6389 SM00028 Tetratricopeptide repeats AMED_6389 SM00862 Transcriptional regulatory protein, C terminal AMED_6389 SM01043 Bacterial transcriptional activator domain AMED_6397 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_6401 SM00387 Histidine kinase-like ATPases AMED_6402 SM00960 Roadblock/LC7 domain AMED_6421 SM00829 Enoylreductase AMED_6431 SM00458 Ricin-type beta-trefoil AMED_6432 SM00458 Ricin-type beta-trefoil AMED_6432 SM00633 Glycosyl hydrolase family 10 AMED_6443 SM00421 helix_turn_helix, Lux Regulon AMED_6446 SM01043 Bacterial transcriptional activator domain AMED_6457 SM00028 Tetratricopeptide repeats AMED_6457 SM00862 Transcriptional regulatory protein, C terminal AMED_6457 SM01043 Bacterial transcriptional activator domain AMED_6464 SM00849 Metallo-beta-lactamase superfamily AMED_6465 SM00421 helix_turn_helix, Lux Regulon AMED_6466 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMED_6468 SM00421 helix_turn_helix, Lux Regulon AMED_6476 SM00421 helix_turn_helix, Lux Regulon AMED_6477 SM00421 helix_turn_helix, Lux Regulon AMED_6479 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6480 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_6482 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AMED_6489 SM00382 ATPases associated with a variety of cellular activities AMED_6491 SM00387 Histidine kinase-like ATPases AMED_6492 SM00421 helix_turn_helix, Lux Regulon AMED_6492 SM00448 cheY-homologous receiver domain AMED_6503 SM00382 ATPases associated with a variety of cellular activities AMED_6506 SM00421 helix_turn_helix, Lux Regulon AMED_6506 SM00448 cheY-homologous receiver domain AMED_6521 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_6522 SM00342 helix_turn_helix, arabinose operon control protein AMED_6526 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_6526 SM01012 AMED_6526 AMED_6533 SM00382 ATPases associated with a variety of cellular activities AMED_6541 SM01012 AMED_6541 AMED_6542 SM01012 AMED_6542 AMED_6545 SM01012 AMED_6545 AMED_6546 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_6546 SM01012 AMED_6546 AMED_6547 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_6547 SM01012 AMED_6547 AMED_6551 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_6551 SM01012 AMED_6551 AMED_6552 SM00331 Sigma factor PP2C-like phosphatases AMED_6562 SM01012 AMED_6562 AMED_6563 SM00829 Enoylreductase AMED_6569 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_6578 SM00829 Enoylreductase AMED_6580 SM00116 Domain in cystathionine beta-synthase and other proteins. AMED_6582 SM00382 ATPases associated with a variety of cellular activities AMED_6587 SM00400 zinc finger AMED_6587 SM00493 AMED_6587 AMED_6587 SM00766 DNA primase DnaG DnaB-binding AMED_6592 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_6597 SM00093 SERine Proteinase INhibitors AMED_6598 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMED_6600 SM00421 helix_turn_helix, Lux Regulon AMED_6600 SM00448 cheY-homologous receiver domain AMED_6603 SM00382 ATPases associated with a variety of cellular activities AMED_6608 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_6623 SM01091 Transporter associated domain AMED_6628 SM00271 DnaJ molecular chaperone homology domain AMED_6641 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_6641 SM00387 Histidine kinase-like ATPases AMED_6641 SM00388 His Kinase A (phosphoacceptor) domain AMED_6642 SM00448 cheY-homologous receiver domain AMED_6642 SM00862 Transcriptional regulatory protein, C terminal AMED_6653 SM00829 Enoylreductase AMED_6654 SM00729 Elongator protein 3, MiaB family, Radical SAM AMED_6670 SM00829 Enoylreductase AMED_6674 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_6675 SM00495 Chitin-binding domain type 3 AMED_6681 SM00838 Elongation factor G C-terminus AMED_6689 SM00849 Metallo-beta-lactamase superfamily AMED_6690 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMED_6693 SM00855 Phosphoglycerate mutase family AMED_6696 SM00487 DEAD-like helicases superfamily AMED_6696 SM00490 helicase superfamily c-terminal domain AMED_6698 SM00836 DALR anticodon binding domain AMED_6698 SM01016 Arginyl tRNA synthetase N terminal dom AMED_6703 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMED_6707 SM00316 Ribosomal protein S1-like RNA-binding domain AMED_6711 SM00382 ATPases associated with a variety of cellular activities AMED_6714 SM00562 AMED_6714 AMED_6726 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_6739 SM00382 ATPases associated with a variety of cellular activities AMED_6739 SM00994 ClpX C4-type zinc finger AMED_6739 SM01086 C-terminal, D2-small domain, of ClpB protein AMED_6746 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_6746 SM00387 Histidine kinase-like ATPases AMED_6746 SM00388 His Kinase A (phosphoacceptor) domain AMED_6749 SM00530 Helix-turn-helix XRE-family like proteins AMED_6753 SM00530 Helix-turn-helix XRE-family like proteins AMED_6755 SM00100 Cyclic nucleotide-monophosphate binding domain AMED_6755 SM00419 helix_turn_helix, cAMP Regulatory protein AMED_6762 SM00862 Transcriptional regulatory protein, C terminal AMED_6762 SM01043 Bacterial transcriptional activator domain AMED_6763 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMED_6768 SM00028 Tetratricopeptide repeats AMED_6772 SM00382 ATPases associated with a variety of cellular activities AMED_6778 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_6786 SM00331 Sigma factor PP2C-like phosphatases AMED_6787 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_6787 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_6787 SM00387 Histidine kinase-like ATPases AMED_6787 SM00388 His Kinase A (phosphoacceptor) domain AMED_6787 SM00448 cheY-homologous receiver domain AMED_6792 SM00530 Helix-turn-helix XRE-family like proteins AMED_6798 SM00822 AMED_6798 AMED_6804 SM00606 Cellulose Binding Domain Type IV AMED_6810 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_6810 SM01232 AMED_6810 AMED_6813 SM00849 Metallo-beta-lactamase superfamily AMED_6820 SM00507 HNH nucleases AMED_6823 SM00642 Alpha-amylase domain AMED_6829 SM00382 ATPases associated with a variety of cellular activities AMED_6831 SM00855 Phosphoglycerate mutase family AMED_6862 SM00903 Flavin reductase like domain AMED_6864 SM00822 AMED_6864 AMED_6864 SM00825 Beta-ketoacyl synthase AMED_6864 SM00826 AMED_6864 AMED_6864 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMED_6874 SM00342 helix_turn_helix, arabinose operon control protein AMED_6875 SM00862 Transcriptional regulatory protein, C terminal AMED_6875 SM01043 Bacterial transcriptional activator domain AMED_6883 SM00421 helix_turn_helix, Lux Regulon AMED_6883 SM00448 cheY-homologous receiver domain AMED_6885 SM00342 helix_turn_helix, arabinose operon control protein AMED_6886 SM00421 helix_turn_helix, Lux Regulon AMED_6886 SM00448 cheY-homologous receiver domain AMED_6901 SM00822 AMED_6901 AMED_6904 SM00729 Elongator protein 3, MiaB family, Radical SAM AMED_6911 SM00710 Parallel beta-helix repeats AMED_6912 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AMED_6912 SM00710 Parallel beta-helix repeats AMED_6913 SM00448 cheY-homologous receiver domain AMED_6913 SM00862 Transcriptional regulatory protein, C terminal AMED_6914 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_6914 SM00387 Histidine kinase-like ATPases AMED_6914 SM00388 His Kinase A (phosphoacceptor) domain AMED_6916 SM00354 helix_turn _helix lactose operon repressor AMED_6920 SM00642 Alpha-amylase domain AMED_6921 SM00382 ATPases associated with a variety of cellular activities AMED_6935 SM00563 Phosphate acyltransferases AMED_6937 SM00354 helix_turn _helix lactose operon repressor AMED_6940 SM00346 helix_turn_helix isocitrate lyase regulation AMED_6941 SM00448 cheY-homologous receiver domain AMED_6941 SM00862 Transcriptional regulatory protein, C terminal AMED_6942 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_6942 SM00387 Histidine kinase-like ATPases AMED_6942 SM00388 His Kinase A (phosphoacceptor) domain AMED_6960 SM00849 Metallo-beta-lactamase superfamily AMED_6963 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMED_6969 SM00822 AMED_6969 AMED_6976 SM00855 Phosphoglycerate mutase family AMED_6978 SM00822 AMED_6978 AMED_6980 SM00421 helix_turn_helix, Lux Regulon AMED_6983 SM00482 DNA polymerase A domain AMED_6985 SM00382 ATPases associated with a variety of cellular activities AMED_6985 SM00487 DEAD-like helicases superfamily AMED_6985 SM00490 helicase superfamily c-terminal domain AMED_6985 SM00847 Helicase associated domain (HA2) Add an annotation AMED_6992 SM00481 DNA polymerase alpha chain like domain AMED_6994 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_6994 SM00895 AMED_6994 AMED_6999 SM00267 diguanylate cyclase AMED_7008 SM00316 Ribosomal protein S1-like RNA-binding domain AMED_7011 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_7013 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMED_7013 SM01232 AMED_7013 AMED_7024 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_7024 SM00387 Histidine kinase-like ATPases AMED_7025 SM00421 helix_turn_helix, Lux Regulon AMED_7025 SM00448 cheY-homologous receiver domain AMED_7026 SM00481 DNA polymerase alpha chain like domain AMED_7027 SM00382 ATPases associated with a variety of cellular activities AMED_7028 SM00382 ATPases associated with a variety of cellular activities AMED_7054 SM00327 von Willebrand factor (vWF) type A domain AMED_7054 SM00382 ATPases associated with a variety of cellular activities AMED_7065 SM00382 ATPases associated with a variety of cellular activities AMED_7067 SM00530 Helix-turn-helix XRE-family like proteins AMED_7070 SM00495 Chitin-binding domain type 3 AMED_7082 SM00479 AMED_7082 AMED_7089 SM00257 Lysin motif AMED_7089 SM01043 Bacterial transcriptional activator domain AMED_7110 SM00530 Helix-turn-helix XRE-family like proteins AMED_7112 SM00530 Helix-turn-helix XRE-family like proteins AMED_7121 SM00829 Enoylreductase AMED_7122 SM00861 Transketolase, pyrimidine binding domain AMED_7130 SM00903 Flavin reductase like domain AMED_7133 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_7133 SM00895 AMED_7133 AMED_7144 SM00822 AMED_7144 AMED_7149 SM00829 Enoylreductase AMED_7154 SM00382 ATPases associated with a variety of cellular activities AMED_7155 SM00382 ATPases associated with a variety of cellular activities AMED_7161 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_7161 SM00895 AMED_7161 AMED_7164 SM00829 Enoylreductase AMED_7172 SM00822 AMED_7172 AMED_7183 SM00346 helix_turn_helix isocitrate lyase regulation AMED_7187 SM00903 Flavin reductase like domain AMED_7194 SM00822 AMED_7194 AMED_7210 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMED_7214 SM00822 AMED_7214 AMED_7231 SM00829 Enoylreductase AMED_7234 SM00421 helix_turn_helix, Lux Regulon AMED_7234 SM00448 cheY-homologous receiver domain AMED_7238 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_7246 SM01007 Class II Aldolase and Adducin N-terminal domain AMED_7248 SM00849 Metallo-beta-lactamase superfamily AMED_7256 SM00354 helix_turn _helix lactose operon repressor AMED_7262 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_7262 SM00895 AMED_7262 AMED_7267 SM01217 AMED_7267 AMED_7276 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_7276 SM00866 AMED_7276 AMED_7291 SM00470 ParB-like nuclease domain AMED_7323 SM00530 Helix-turn-helix XRE-family like proteins AMED_7329 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_7337 SM00822 AMED_7337 AMED_7338 SM00342 helix_turn_helix, arabinose operon control protein AMED_7348 SM00364 Leucine-rich repeats, bacterial type AMED_7348 SM00369 Leucine-rich repeats, typical (most populated) subfamily AMED_7349 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AMED_7350 SM00560 LamG-like jellyroll fold domain AMED_7355 SM00342 helix_turn_helix, arabinose operon control protein AMED_7364 SM00382 ATPases associated with a variety of cellular activities AMED_7379 SM01217 AMED_7379 AMED_7384 SM00382 ATPases associated with a variety of cellular activities AMED_7385 SM00060 Fibronectin type 3 domain AMED_7385 SM00637 AMED_7385 AMED_7386 SM00458 Ricin-type beta-trefoil AMED_7389 SM01012 AMED_7389 AMED_7413 SM00060 Fibronectin type 3 domain AMED_7413 SM00637 AMED_7413 AMED_7415 SM00354 helix_turn _helix lactose operon repressor AMED_7427 SM00331 Sigma factor PP2C-like phosphatases AMED_7429 SM01130 AMED_7429 AMED_7443 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_7445 SM00060 Fibronectin type 3 domain AMED_7446 SM00481 DNA polymerase alpha chain like domain AMED_7455 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_7456 SM00382 ATPases associated with a variety of cellular activities AMED_7468 SM00960 Roadblock/LC7 domain AMED_7469 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_7469 SM00387 Histidine kinase-like ATPases AMED_7470 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_7476 SM00421 helix_turn_helix, Lux Regulon AMED_7480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMED_7480 SM01012 AMED_7480 AMED_7482 SM00458 Ricin-type beta-trefoil AMED_7484 SM00813 Alpha-L-arabinofuranosidase C-terminus AMED_7488 SM00354 helix_turn _helix lactose operon repressor AMED_7493 SM00829 Enoylreductase AMED_7496 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AMED_7506 SM00363 S4 RNA-binding domain AMED_7514 SM00052 Putative diguanylate phosphodiesterase AMED_7514 SM00267 diguanylate cyclase AMED_7519 SM00636 AMED_7519 AMED_7527 SM00530 Helix-turn-helix XRE-family like proteins AMED_7539 SM00327 von Willebrand factor (vWF) type A domain AMED_7541 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_7545 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_7547 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMED_7555 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_7555 SM00895 AMED_7555 AMED_7570 SM00861 Transketolase, pyrimidine binding domain AMED_7572 SM00344 helix_turn_helix ASNC type AMED_7577 SM00448 cheY-homologous receiver domain AMED_7577 SM00862 Transcriptional regulatory protein, C terminal AMED_7578 SM00387 Histidine kinase-like ATPases AMED_7578 SM00388 His Kinase A (phosphoacceptor) domain AMED_7580 SM00346 helix_turn_helix isocitrate lyase regulation AMED_7581 SM00060 Fibronectin type 3 domain AMED_7581 SM00636 AMED_7581 AMED_7583 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_7587 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_7593 SM00448 cheY-homologous receiver domain AMED_7594 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_7594 SM00387 Histidine kinase-like ATPases AMED_7594 SM00388 His Kinase A (phosphoacceptor) domain AMED_7595 SM00331 Sigma factor PP2C-like phosphatases AMED_7595 SM00448 cheY-homologous receiver domain AMED_7607 SM00822 AMED_7607 AMED_7621 SM00382 ATPases associated with a variety of cellular activities AMED_7625 SM00028 Tetratricopeptide repeats AMED_7645 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMED_7650 SM00342 helix_turn_helix, arabinose operon control protein AMED_7660 SM00507 HNH nucleases AMED_7673 SM00506 Appr-1"-p processing enzyme AMED_7679 SM00960 Roadblock/LC7 domain AMED_7680 SM00387 Histidine kinase-like ATPases AMED_7685 SM00267 diguanylate cyclase AMED_7695 SM00342 helix_turn_helix, arabinose operon control protein AMED_7697 SM00342 helix_turn_helix, arabinose operon control protein AMED_7705 SM00849 Metallo-beta-lactamase superfamily AMED_7713 SM00232 JAB/MPN domain AMED_7723 SM00487 DEAD-like helicases superfamily AMED_7723 SM00491 AMED_7723 AMED_7737 SM00834 Putative regulatory protein AMED_7739 SM00344 helix_turn_helix ASNC type AMED_7741 SM00344 helix_turn_helix ASNC type AMED_7747 SM01120 AMED_7747 AMED_7759 SM00342 helix_turn_helix, arabinose operon control protein AMED_7775 SM00382 ATPases associated with a variety of cellular activities AMED_7790 SM00937 AMED_7790 AMED_7792 SM00357 Cold shock protein domain AMED_7792 SM00382 ATPases associated with a variety of cellular activities AMED_7792 SM00959 Rho termination factor, N-terminal domain AMED_7797 SM00836 DALR anticodon binding domain AMED_7797 SM01016 Arginyl tRNA synthetase N terminal dom AMED_7802 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_7803 SM00822 AMED_7803 AMED_7806 SM00829 Enoylreductase AMED_7808 SM00342 helix_turn_helix, arabinose operon control protein AMED_7818 SM00028 Tetratricopeptide repeats AMED_7818 SM00862 Transcriptional regulatory protein, C terminal AMED_7818 SM01043 Bacterial transcriptional activator domain AMED_7821 SM00710 Parallel beta-helix repeats AMED_7822 SM00060 Fibronectin type 3 domain AMED_7822 SM00458 Ricin-type beta-trefoil AMED_7823 SM00458 Ricin-type beta-trefoil AMED_7824 SM00458 Ricin-type beta-trefoil AMED_7825 SM00060 Fibronectin type 3 domain AMED_7825 SM00637 AMED_7825 AMED_7828 SM00458 Ricin-type beta-trefoil AMED_7829 SM00458 Ricin-type beta-trefoil AMED_7830 SM00710 Parallel beta-helix repeats AMED_7833 SM00637 AMED_7833 AMED_7834 SM00422 helix_turn_helix, mercury resistance AMED_7848 SM00346 helix_turn_helix isocitrate lyase regulation AMED_7854 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_7854 SM00419 helix_turn_helix, cAMP Regulatory protein AMED_7856 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_7856 SM00895 AMED_7856 AMED_7874 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_7874 SM00895 AMED_7874 AMED_7876 SM01329 AMED_7876 AMED_7882 SM00960 Roadblock/LC7 domain AMED_7890 SM00421 helix_turn_helix, Lux Regulon AMED_7890 SM00448 cheY-homologous receiver domain AMED_7899 SM00382 ATPases associated with a variety of cellular activities AMED_7914 SM00822 AMED_7914 AMED_7921 SM00878 Biotin carboxylase C-terminal domain AMED_7938 SM00829 Enoylreductase AMED_7939 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMED_7939 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMED_7941 SM00387 Histidine kinase-like ATPases AMED_7942 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_7943 SM00448 cheY-homologous receiver domain AMED_7943 SM00862 Transcriptional regulatory protein, C terminal AMED_7944 SM00382 ATPases associated with a variety of cellular activities AMED_7946 SM00382 ATPases associated with a variety of cellular activities AMED_7949 SM00861 Transketolase, pyrimidine binding domain AMED_7959 SM00382 ATPases associated with a variety of cellular activities AMED_7961 SM00919 Malic enzyme, NAD binding domain AMED_7961 SM01274 AMED_7961 AMED_7964 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_7967 SM00855 Phosphoglycerate mutase family AMED_7970 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMED_7972 SM00387 Histidine kinase-like ATPases AMED_7984 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMED_7988 SM00957 SecA DEAD-like domain AMED_7988 SM00958 SecA preprotein cross-linking domain AMED_7991 SM00909 Sporulation and spore germination AMED_7992 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_7992 SM00387 Histidine kinase-like ATPases AMED_7992 SM00388 His Kinase A (phosphoacceptor) domain AMED_7993 SM00448 cheY-homologous receiver domain AMED_7993 SM00862 Transcriptional regulatory protein, C terminal AMED_7995 SM00346 helix_turn_helix isocitrate lyase regulation AMED_8006 SM00996 S-adenosyl-L-homocysteine hydrolase AMED_8006 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMED_8011 SM00862 Transcriptional regulatory protein, C terminal AMED_8011 SM01043 Bacterial transcriptional activator domain AMED_8024 SM00382 ATPases associated with a variety of cellular activities AMED_8030 SM00838 Elongation factor G C-terminus AMED_8035 SM00387 Histidine kinase-like ATPases AMED_8035 SM00388 His Kinase A (phosphoacceptor) domain AMED_8036 SM00448 cheY-homologous receiver domain AMED_8036 SM00862 Transcriptional regulatory protein, C terminal AMED_8038 SM00382 ATPases associated with a variety of cellular activities AMED_8040 SM00382 ATPases associated with a variety of cellular activities AMED_8048 SM00342 helix_turn_helix, arabinose operon control protein AMED_8048 SM01009 AlkA N-terminal domain AMED_8060 SM00020 Trypsin-like serine protease AMED_8063 SM00530 Helix-turn-helix XRE-family like proteins AMED_8067 SM00849 Metallo-beta-lactamase superfamily AMED_8071 SM01240 AMED_8071 AMED_8074 SM00670 Large family of predicted nucleotide-binding domains AMED_8093 SM00849 Metallo-beta-lactamase superfamily AMED_8094 SM00344 helix_turn_helix ASNC type AMED_8107 SM00116 Domain in cystathionine beta-synthase and other proteins. AMED_8113 SM00822 AMED_8113 AMED_8115 SM00421 helix_turn_helix, Lux Regulon AMED_8118 SM00862 Transcriptional regulatory protein, C terminal AMED_8118 SM01043 Bacterial transcriptional activator domain AMED_8119 SM00421 helix_turn_helix, Lux Regulon AMED_8119 SM00862 Transcriptional regulatory protein, C terminal AMED_8119 SM01043 Bacterial transcriptional activator domain AMED_8124 SM00421 helix_turn_helix, Lux Regulon AMED_8129 SM00344 helix_turn_helix ASNC type AMED_8133 SM00495 Chitin-binding domain type 3 AMED_8134 SM00824 Thioesterase AMED_8135 SM00495 Chitin-binding domain type 3 AMED_8136 SM00342 helix_turn_helix, arabinose operon control protein AMED_8139 SM00637 AMED_8139 AMED_8140 SM00889 Elongation factor G, domain IV AMED_8142 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_8142 SM00387 Histidine kinase-like ATPases AMED_8142 SM00388 His Kinase A (phosphoacceptor) domain AMED_8143 SM01192 AMED_8143 AMED_8143 SM01193 AMED_8143 AMED_8145 SM00382 ATPases associated with a variety of cellular activities AMED_8149 SM00028 Tetratricopeptide repeats AMED_8151 SM00862 Transcriptional regulatory protein, C terminal AMED_8151 SM01043 Bacterial transcriptional activator domain AMED_8154 SM00382 ATPases associated with a variety of cellular activities AMED_8154 SM00421 helix_turn_helix, Lux Regulon AMED_8159 SM00382 ATPases associated with a variety of cellular activities AMED_8166 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_8187 SM00986 Uracil DNA glycosylase superfamily AMED_8187 SM00987 UreE urease accessory protein, C-terminal domain AMED_8191 SM00382 ATPases associated with a variety of cellular activities AMED_8192 SM00382 ATPases associated with a variety of cellular activities AMED_8200 SM01192 AMED_8200 AMED_8200 SM01193 AMED_8200 AMED_8202 SM00028 Tetratricopeptide repeats AMED_8212 SM00382 ATPases associated with a variety of cellular activities AMED_8219 SM00487 DEAD-like helicases superfamily AMED_8219 SM00490 helicase superfamily c-terminal domain AMED_8219 SM00982 AMED_8219 AMED_8219 SM01058 CarD-like/TRCF domain AMED_8221 SM00530 Helix-turn-helix XRE-family like proteins AMED_8224 SM00387 Histidine kinase-like ATPases AMED_8225 SM00421 helix_turn_helix, Lux Regulon AMED_8225 SM00448 cheY-homologous receiver domain AMED_8233 SM00267 diguanylate cyclase AMED_8235 SM01400 AMED_8235 AMED_8244 SM00382 ATPases associated with a variety of cellular activities AMED_8245 SM01022 AMED_8245 AMED_8247 SM00382 ATPases associated with a variety of cellular activities AMED_8248 SM00650 Ribosomal RNA adenine dimethylases AMED_8249 SM01208 AMED_8249 AMED_8253 SM00382 ATPases associated with a variety of cellular activities AMED_8257 SM00829 Enoylreductase AMED_8261 SM00342 helix_turn_helix, arabinose operon control protein AMED_8263 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_8275 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_8278 SM00052 Putative diguanylate phosphodiesterase AMED_8278 SM00091 PAS domain AMED_8278 SM00267 diguanylate cyclase AMED_8286 SM00448 cheY-homologous receiver domain AMED_8286 SM00862 Transcriptional regulatory protein, C terminal AMED_8287 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_8287 SM00387 Histidine kinase-like ATPases AMED_8287 SM00388 His Kinase A (phosphoacceptor) domain AMED_8294 SM00823 Phosphopantetheine attachment site AMED_8294 SM01294 AMED_8294 AMED_8295 SM00823 Phosphopantetheine attachment site AMED_8296 SM00824 Thioesterase AMED_8299 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_8303 SM00382 ATPases associated with a variety of cellular activities AMED_8307 SM00487 DEAD-like helicases superfamily AMED_8307 SM00490 helicase superfamily c-terminal domain AMED_8310 SM00852 Probable molybdopterin binding domain AMED_8313 SM00834 Putative regulatory protein AMED_8314 SM00858 AMED_8314 AMED_8317 SM00852 Probable molybdopterin binding domain AMED_8321 SM00387 Histidine kinase-like ATPases AMED_8321 SM00388 His Kinase A (phosphoacceptor) domain AMED_8322 SM00448 cheY-homologous receiver domain AMED_8322 SM00862 Transcriptional regulatory protein, C terminal AMED_8329 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMED_8331 SM00420 helix_turn_helix, Deoxyribose operon repressor AMED_8331 SM01134 AMED_8331 AMED_8332 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_8332 SM00387 Histidine kinase-like ATPases AMED_8332 SM00388 His Kinase A (phosphoacceptor) domain AMED_8333 SM00448 cheY-homologous receiver domain AMED_8333 SM00862 Transcriptional regulatory protein, C terminal AMED_8335 SM00421 helix_turn_helix, Lux Regulon AMED_8335 SM00448 cheY-homologous receiver domain AMED_8341 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_8344 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_8360 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_8370 SM00382 ATPases associated with a variety of cellular activities AMED_8373 SM00382 ATPases associated with a variety of cellular activities AMED_8377 SM00458 Ricin-type beta-trefoil AMED_8378 SM00458 Ricin-type beta-trefoil AMED_8379 SM00458 Ricin-type beta-trefoil AMED_8380 SM00458 Ricin-type beta-trefoil AMED_8381 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_8381 SM00895 AMED_8381 AMED_8385 SM00796 Allophanate hydrolase subunit 1 AMED_8386 SM00797 Allophanate hydrolase subunit 2 AMED_8389 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_8391 SM00829 Enoylreductase AMED_8394 SM00529 Helix-turn-helix diphteria tox regulatory element AMED_8394 SM00899 AMED_8394 AMED_8420 SM00530 Helix-turn-helix XRE-family like proteins AMED_8422 SM00382 ATPases associated with a variety of cellular activities AMED_8435 SM00944 Pro-kumamolisin, activation domain AMED_8437 SM00849 Metallo-beta-lactamase superfamily AMED_8438 SM00849 Metallo-beta-lactamase superfamily AMED_8454 SM00382 ATPases associated with a variety of cellular activities AMED_8456 SM00387 Histidine kinase-like ATPases AMED_8457 SM00421 helix_turn_helix, Lux Regulon AMED_8457 SM00448 cheY-homologous receiver domain AMED_8464 SM00382 ATPases associated with a variety of cellular activities AMED_8467 SM00448 cheY-homologous receiver domain AMED_8467 SM00862 Transcriptional regulatory protein, C terminal AMED_8468 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_8468 SM00387 Histidine kinase-like ATPases AMED_8468 SM00388 His Kinase A (phosphoacceptor) domain AMED_8480 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_8489 SM00357 Cold shock protein domain AMED_8498 SM00382 ATPases associated with a variety of cellular activities AMED_8511 SM00382 ATPases associated with a variety of cellular activities AMED_8515 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_8516 SM00729 Elongator protein 3, MiaB family, Radical SAM AMED_8518 SM00257 Lysin motif AMED_8521 SM00852 Probable molybdopterin binding domain AMED_8523 SM00919 Malic enzyme, NAD binding domain AMED_8523 SM01274 AMED_8523 AMED_8528 SM00960 Roadblock/LC7 domain AMED_8531 SM00960 Roadblock/LC7 domain AMED_8532 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_8532 SM00387 Histidine kinase-like ATPases AMED_8533 SM00062 Bacterial periplasmic substrate-binding proteins AMED_8536 SM00382 ATPases associated with a variety of cellular activities AMED_8539 SM00944 Pro-kumamolisin, activation domain AMED_8544 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_8544 SM00387 Histidine kinase-like ATPases AMED_8547 SM00487 DEAD-like helicases superfamily AMED_8547 SM00490 helicase superfamily c-terminal domain AMED_8551 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_8555 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_8556 SM00357 Cold shock protein domain AMED_8559 SM00852 Probable molybdopterin binding domain AMED_8561 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_8565 SM00382 ATPases associated with a variety of cellular activities AMED_8565 SM01072 Cell division protein 48 (CDC48) domain 2 AMED_8565 SM01073 Cell division protein 48 (CDC48) N-terminal domain AMED_8570 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMED_8575 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_8583 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_8583 SM00866 AMED_8583 AMED_8593 SM00862 Transcriptional regulatory protein, C terminal AMED_8593 SM01043 Bacterial transcriptional activator domain AMED_8599 SM00829 Enoylreductase AMED_8606 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_8614 SM01217 AMED_8614 AMED_8619 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_8621 SM00382 ATPases associated with a variety of cellular activities AMED_8626 SM00881 CoA binding domain AMED_8635 SM00448 cheY-homologous receiver domain AMED_8635 SM00862 Transcriptional regulatory protein, C terminal AMED_8636 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_8636 SM00387 Histidine kinase-like ATPases AMED_8636 SM00388 His Kinase A (phosphoacceptor) domain AMED_8639 SM00829 Enoylreductase AMED_8641 SM00346 helix_turn_helix isocitrate lyase regulation AMED_8643 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMED_8649 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_8649 SM00387 Histidine kinase-like ATPases AMED_8649 SM00388 His Kinase A (phosphoacceptor) domain AMED_8652 SM00028 Tetratricopeptide repeats AMED_8659 SM00812 Alpha-L-fucosidase AMED_8665 SM00422 helix_turn_helix, mercury resistance AMED_8672 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_8676 SM00382 ATPases associated with a variety of cellular activities AMED_8678 SM01058 CarD-like/TRCF domain AMED_8684 SM00840 AMED_8684 AMED_8685 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMED_8688 SM00460 Transglutaminase/protease-like homologues AMED_8692 SM01007 Class II Aldolase and Adducin N-terminal domain AMED_8697 SM00382 ATPases associated with a variety of cellular activities AMED_8699 SM00354 helix_turn _helix lactose operon repressor AMED_8700 SM00947 Carbonic anhydrase AMED_8702 SM00478 endonuclease III AMED_8706 SM00382 ATPases associated with a variety of cellular activities AMED_8719 SM00382 ATPases associated with a variety of cellular activities AMED_8721 SM00862 Transcriptional regulatory protein, C terminal AMED_8721 SM01043 Bacterial transcriptional activator domain AMED_8726 SM00530 Helix-turn-helix XRE-family like proteins AMED_8729 SM00382 ATPases associated with a variety of cellular activities AMED_8729 SM01086 C-terminal, D2-small domain, of ClpB protein AMED_8732 SM00342 helix_turn_helix, arabinose operon control protein AMED_8743 SM00422 helix_turn_helix, mercury resistance AMED_8745 SM00905 Dihydroneopterin aldolase AMED_8748 SM00382 ATPases associated with a variety of cellular activities AMED_8760 SM00649 Ribosomal protein L11/L12 AMED_8762 SM00631 AMED_8762 AMED_8768 SM00530 Helix-turn-helix XRE-family like proteins AMED_8777 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_8787 SM00382 ATPases associated with a variety of cellular activities AMED_8794 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMED_8794 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMED_8794 SM00493 AMED_8794 AMED_8799 SM00487 DEAD-like helicases superfamily AMED_8799 SM00490 helicase superfamily c-terminal domain AMED_8800 SM00943 Bifunctional DNA primase/polymerase, N-terminal AMED_8826 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_8830 SM00478 endonuclease III AMED_8830 SM00525 AMED_8830 AMED_8832 SM00100 Cyclic nucleotide-monophosphate binding domain AMED_8832 SM00419 helix_turn_helix, cAMP Regulatory protein AMED_8835 SM00480 DNA polymerase III beta subunit AMED_8843 SM00849 Metallo-beta-lactamase superfamily AMED_8854 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_8882 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMED_8886 SM00917 LeuA allosteric (dimerisation) domain AMED_8898 SM00382 ATPases associated with a variety of cellular activities AMED_8899 SM00382 ATPases associated with a variety of cellular activities AMED_8910 SM00047 Lysozyme subfamily 2 AMED_8911 SM00493 AMED_8911 AMED_8913 SM00646 AMED_8913 AMED_8918 SM00382 ATPases associated with a variety of cellular activities AMED_8923 SM00960 Roadblock/LC7 domain AMED_8924 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_8924 SM00387 Histidine kinase-like ATPases AMED_8925 SM00382 ATPases associated with a variety of cellular activities AMED_8929 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMED_8929 SM00387 Histidine kinase-like ATPases AMED_8929 SM00388 His Kinase A (phosphoacceptor) domain AMED_8930 SM00448 cheY-homologous receiver domain AMED_8930 SM00862 Transcriptional regulatory protein, C terminal AMED_8933 SM00421 helix_turn_helix, Lux Regulon AMED_8933 SM00448 cheY-homologous receiver domain AMED_8938 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AMED_8941 SM00220 Serine/Threonine protein kinases, catalytic domain AMED_8943 SM00331 Sigma factor PP2C-like phosphatases AMED_8943 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMED_8953 SM00854 Bacterial capsule synthesis protein PGA_cap AMED_8969 SM00422 helix_turn_helix, mercury resistance AMED_8972 SM00382 ATPases associated with a variety of cellular activities AMED_8974 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_8974 SM00895 AMED_8974 AMED_8975 SM01130 AMED_8975 AMED_8979 SM00344 helix_turn_helix ASNC type AMED_8990 SM00458 Ricin-type beta-trefoil AMED_8992 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_8992 SM00866 AMED_8992 AMED_8999 SM00267 diguanylate cyclase AMED_9003 SM00382 ATPases associated with a variety of cellular activities AMED_9008 SM00862 Transcriptional regulatory protein, C terminal AMED_9012 SM00450 Rhodanese Homology Domain AMED_9016 SM00796 Allophanate hydrolase subunit 1 AMED_9017 SM00797 Allophanate hydrolase subunit 2 AMED_9027 SM00382 ATPases associated with a variety of cellular activities AMED_9042 SM00641 Glycosyl hydrolases family 25 AMED_9043 SM00641 Glycosyl hydrolases family 25 AMED_9049 SM00382 ATPases associated with a variety of cellular activities AMED_9050 SM01211 AMED_9050 AMED_9055 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMED_9057 SM00849 Metallo-beta-lactamase superfamily AMED_9062 SM00382 ATPases associated with a variety of cellular activities AMED_9064 SM00062 Bacterial periplasmic substrate-binding proteins AMED_9064 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AMED_9065 SM00062 Bacterial periplasmic substrate-binding proteins AMED_9066 SM00062 Bacterial periplasmic substrate-binding proteins AMED_9067 SM00998 Adenylosuccinate lyase C-terminus AMED_9068 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMED_9069 SM00822 AMED_9069 AMED_9071 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMED_9071 SM00895 AMED_9071 AMED_9086 SM01209 AMED_9086 AMED_9086 SM01210 AMED_9086 AMED_9098 SM00788 Adenylosuccinate synthetase AMED_9105 SM00267 diguanylate cyclase AMED_9113 SM00822 AMED_9113 AMED_9127 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_9129 SM00867 YceI-like domain AMED_9136 SM00382 ATPases associated with a variety of cellular activities AMED_9139 SM00354 helix_turn _helix lactose operon repressor AMED_9142 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AMED_9151 SM00382 ATPases associated with a variety of cellular activities AMED_9155 SM00382 ATPases associated with a variety of cellular activities AMED_9155 SM01086 C-terminal, D2-small domain, of ClpB protein AMED_9157 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_9161 SM00495 Chitin-binding domain type 3 AMED_9163 SM00422 helix_turn_helix, mercury resistance AMED_9164 SM00271 DnaJ molecular chaperone homology domain AMED_9169 SM00530 Helix-turn-helix XRE-family like proteins AMED_9178 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_9194 SM00986 Uracil DNA glycosylase superfamily AMED_9194 SM00987 UreE urease accessory protein, C-terminal domain AMED_9195 SM00421 helix_turn_helix, Lux Regulon AMED_9199 SM00530 Helix-turn-helix XRE-family like proteins AMED_9200 SM00364 Leucine-rich repeats, bacterial type AMED_9200 SM00369 Leucine-rich repeats, typical (most populated) subfamily AMED_9202 SM00883 Chaperonin 10 Kd subunit AMED_9207 SM00382 ATPases associated with a variety of cellular activities AMED_9209 SM00062 Bacterial periplasmic substrate-binding proteins AMED_9212 SM00460 Transglutaminase/protease-like homologues AMED_9217 SM00861 Transketolase, pyrimidine binding domain AMED_9220 SM00382 ATPases associated with a variety of cellular activities AMED_9226 SM00487 DEAD-like helicases superfamily AMED_9233 SM00822 AMED_9233 AMED_9236 SM00422 helix_turn_helix, mercury resistance AMED_9240 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_9246 SM00530 Helix-turn-helix XRE-family like proteins AMED_9250 SM00382 ATPases associated with a variety of cellular activities AMED_9260 SM00421 helix_turn_helix, Lux Regulon AMED_9260 SM00448 cheY-homologous receiver domain AMED_9263 SM00382 ATPases associated with a variety of cellular activities AMED_9265 SM00382 ATPases associated with a variety of cellular activities AMED_9270 SM00382 ATPases associated with a variety of cellular activities AMED_9272 SM00421 helix_turn_helix, Lux Regulon AMED_9272 SM00448 cheY-homologous receiver domain AMED_9276 SM00822 AMED_9276 AMED_9280 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_9292 SM00518 AP endonuclease family 2 AMED_9304 SM00382 ATPases associated with a variety of cellular activities AMED_9305 SM00347 helix_turn_helix multiple antibiotic resistance protein AMED_9312 SM00421 helix_turn_helix, Lux Regulon AMED_9312 SM00448 cheY-homologous receiver domain AMED_9329 SM00822 AMED_9329 AMED_9338 SM00954 Region found in RelA / SpoT proteins AMED_9346 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMED_9355 SM00646 AMED_9355 AMED_9359 SM00470 ParB-like nuclease domain AMED_9363 SM00393 Putative single-stranded nucleic acids-binding domain AMED_9365 SM01234 AMED_9365